Massive mining of publicly available RNA-seq data from human and mouse

De novo transcriptome profiling of highly purified human lymphocytes primary cells

Differential analyses for RNA-seq: transcript-level estimates improve gene-level inferences

Limits of Peripheral Blood Mononuclear Cells for Gene Expression-Based Biomarkers

Power analysis and sample size estimation for RNA-Seq differential expression

Polyester: simulating RNA-seq datasets with differential transcript expression

Transcriptomics technologies

High-confidence coding and noncoding transcriptome maps

In RNA-Seq, 2 != 2: Between-sample normalization

Shared molecular neuropathology across major psychiatric disorders parallels polygenic overlap

Combining data from multiple RNASeq experiments: release the Kruskal! (...Wallis test)

A review of RNA-Seq expression units

Direct Competition between hnRNP C and U2AF65 Protects the Transcriptome from the Exonization of Alu Elements

De Novo Prediction of PTBP1 Binding and Splicing Targets Reveals Unexpected Features of Its RNA Recognition and Function

Selecting between-sample RNA-Seq normalization methods from the perspective of their assumptions

Spliced synthetic genes as internal controls in RNA sequencing experiments

Fundamental Need for Spike-In Control for Virtually All Genome-Wide Analyses

RNA-seq analysis is easy as 1-2-3 with limma, Glimma and edgeR [version 2; referees: 3 approved]

novel method developed within the MAQC-III project utilizing the expression distributions, corrected for noise and batch effects, and assisted by random resampling, to compute DEG scores related to the Wilcoxon U test (Magic, see Additional file 1: Supplementary Note 2)

Single-Cell Analysis of Human Pancreas Reveals Transcriptional Signatures of Aging and Somatic Mutation Patterns

How not to perform a differential expression analysis (or science)

Massive Mining of Publicly Available RNA-seq Data from Human and Mouse

Canonical Poly(A) Polymerase Activity Promotes the Decay of a Wide Variety of Mammalian Nuclear RNAs