4 Matching Annotations
  1. Sep 2016
  2. ccb.jhu.edu ccb.jhu.edu
    HISAT2
    4
    1. rschulz 06 Sep 2016
      --novel-splicesite-outfile

      use to collect coordinates of identified IES

      paramecium hisat2
    2. rschulz 06 Sep 2016
      --max-intronlen

      set to 1000: max IES length <1000bp

      paramecium hisat2
    3. rschulz 06 Sep 2016
      --min-intronlen

      default acceptable: 26bp is minimal IES length, 20bp is minimal intron length

      paramecium hisat2
    4. rschulz 06 Sep 2016
      --pen-noncansplice

      set to zero

      paramecium hisat2
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    ccb.jhu.edu/software/hisat2/manual.shtml