- Oct 2022
-
nanoporetech.com nanoporetech.com
-
To perform bacterial genome assembly, we suggest using the third-party de novo assembly tool Flye3. This analysis package represents a complete pipeline, taking raw nanopore reads as input, and producing polished contigs as output. We also recommend one round of polishing with Medaka4. These tools can be found on GitHub
-
- Jul 2017
-
www.napoleome.ch www.napoleome.ch
-
Napoleon oak genome sequencing project web site: example of public engagement in tree genomics
Tags
Annotators
URL
-
-
www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
-
Quercus robur Genome sequencing and assembly
data (not yet live) associated with https://hyp.is/4DerrmIaEeehDPNBqsRcxQ/www.biorxiv.org/content/biorxiv/early/2017/06/13/149203.full.pdf
Tags
Annotators
URL
-
- Apr 2016
-
gigadb.org gigadb.org
-
IsPreviousVersionOf doi:10.5524/100148
This paper was studied in a case study that lead to some corrections. See the paper here: http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0127612
-
-
gigadb.org gigadb.org
-
genomically poorly explored
Poorly studied in some part to its very high degree of heterozygosity. You can get some more insight here, where it was nominated as a "top ten genome" http://www.homolog.us/blogs/blog/2015/05/08/top-ten-genomes-ix-pacific-oyster/
Tags
Annotators
URL
-
-
gigadb.org gigadb.org
-
Long Fragment Read technology
See Nature doi:10.1038/nature11236 for more on how LFR works: http://www.nature.com/nature/journal/v487/n7406/full/nature11236.html
Tags
Annotators
URL
-