What Tools/Libraries Do You Use To Visualize Genomic Feature Data?
discussion of tools; recently revived
6 Matching Annotations
- Oct 2017
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www.biostars.org www.biostars.org
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asciigenome.readthedocs.io asciigenome.readthedocs.io
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ASCIIGenome is a command-line genome browser running from terminal window
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www.sanger.ac.uk www.sanger.ac.uk
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Artemis is a free genome browser and annotation tool that allows visualisation of sequence features, next generation data and the results of analyses within the context of the sequence, and also its six-frame translation
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github.com github.com
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Genome Maps is a modern and high-performance web-based HTML5 genome browser
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- Sep 2017
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www.nature.com www.nature.com
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Plot a course through the genome Inspired by Google Maps, a suite of tools is allowing researchers to chart the complex conformations of chromosomes.
mentioned tools are focused on (capture) Hi-C data
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- Sep 2016
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software.broadinstitute.org software.broadinstitute.org
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You must quit IGV and restart for this preference to take effect. The genome should appear in the drop-down list.
restart may be insufficient; had to modify prefs.properties in ~/igv (removing old cached genome values) before i could see my genomes
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