Nextflow detects configuration files from multiple sources and applies them in the following order (from lowest to highest priority):
3 Matching Annotations
- Last 7 days
-
docs.seqera.io docs.seqera.io
Tags
Annotators
URL
-
- Aug 2025
-
www.nextflow.io www.nextflow.io
-
Since each configuration file may contain conflicting settings, they are applied in the following order (from lowest to highest priority):
Tags
Annotators
URL
-
-
www.nextflow.io www.nextflow.io
-
Parameters are applied in the following order (from lowest to highest priority):
Tags
Annotators
URL
-