5,018 Matching Annotations
  1. Jul 2018
    1. On 2013 Oct 31, John Cannell commented:

      The authors stated that markers of oxidative stress are present in autism spectrum disorder (ASD). I wonder if the authors are aware that the genes for the antioxidants superoxide dismutase and thioredoxin reductase are directly up-regulated by the secosteroid 1,25 di-hydroxy vitamin D3 (calcitriol). I believe both genes also harbor a vitamin D response element.

      Peehl DM, Shinghal R, Nonn L, Seto E, Krishnan AV, Brooks JD, Feldman D. Molecular activity of 1,25‐dihydroxyvitamin D3 in primary cultures of human prostatic epithelial cells revealed by cDNA microarray analysis. J. Steroid Biochem Mol. Biol 2004;92:131–141. PMID:15555907>

      Calcitriol also directly up-regulates glutathione reductase and increases glutathione levels.

      Jain SK, et alo. Vitamin D upregulates glutamate cysteine ligase and glutathione reductase, and GSH formation, and decreases ROS and MCP-1 and IL-8 secretion in high-glucose exposed U937 monocytes. Biochem Biophys Res Commun. 2013 Jul 19;437(1):7-11. doi: 10.1016/j.bbrc.2013.06.004. Jain SK, 2013

      Also, supplemental vitamin D significantly reduces oxidative stress in humans.

      Nikooyeh B, et al. Daily intake of vitamin D- or calcium-vitamin D-fortified Persian yogurt drink (doogh) attenuates diabetes-induced oxidative stress: evidence for antioxidative properties of vitamin D.J Hum Nutr Diet. 2013 Jul 5. doi: 10.1111/jhn.12142. Nikooyeh B, 2014

      Asemi Z, et al. Vitamin D supplementation affects serum high-sensitivity C-reactive protein, insulin resistance, and biomarkers of oxidative stress in pregnant women. J Nutr. 2013 Sep;143(9):1432-8. doi: 10.3945/jn.113.177550. Asemi Z, 2013

      Thus the vitamin D theory of ASD (vitamin D deficiency being the environmental risk factor for this highly heritable disorder) is consistent with the authors work. Three recent studies, using community controls, have found 25(OH)D levels are significantly lower in children with ASD. Two of the studies below (Mostafa et al and Gong et al) also found ASD severity, as rated on standard ASD rating scales, is inversely correlated with 25(OH)D levels. Mostafa et al found an R value of -.86 for the association of serum 25(OH)D with ASD severity.

      Gong ZL, Luo CM, Wang L, Shen L, Wei F, Tong RJ, Liu Y. Serum 25-hydroxyvitamin D levels in Chinese children with autism spectrum disorders. Neuroreport. 2013 Oct 1. Gong ZL, 2014

      Meguid NA, Hashish AF, Anwar M, Sidhom G. Reduced serum levels of 25-hydroxy and 1,25-dihydroxy vitamin D in Egyptian children with autism. J Altern Complement Med. 2010 Jun;16(6):641-5. Meguid NA, 2010

      Mostafa GA, Al-Ayadhi LY.Reduced serum concentrations of 25-hydroxy vitamin D in children with autism: relation to autoimmunity. J Neuroinflammation. 2012 Aug 17;9:201. Mostafa GA, 2012

      There is a plethora of basic science explaining why low gestational or early childhood 25(OH)D levels would adversely effect brain development.

      Eyles DW, Feron F, Cui X, Kesby JP, Harms LH, Ko P, McGrath JJ, Burne TH. Developmental vitamin D deficiency causes abnormal brain development. Psychoneuroendocrinology. 2009 Dec;34 Suppl 1:S247-57. doi: 10.1016/j.psyneuen.2009.04.015. Epub . Review. Eyles DW, 2009

      DeLuca GC, Kimball SM, Kolasinski J, Ramagopalan SV, Ebers GC. Review: the role of vitamin D in nervous system health and disease. Neuropathol Appl Neurobiol. 2013 Aug;39(5):458-84. doi: 10.1111/nan.12020. DeLuca GC, 2013

      Eyles DW, Burne TH, McGrath JJ. Vitamin D, effects on brain development, adult brain function and the links between low levels of vitamin D and neuropsychiatric disease. Front Neuroendocrinol. 2013 Jan;34(1):47-64. doi: 10.1016/j.yfrne.2012.07.001. Epub 2012 Jul 11. Review. Eyles DW, 2013

      Furthermore, the vitamin D theory of autism explains most of the epidemiological facts of ASD.

      Cannell JJ. On the aetiology of autism. Acta Paediatr. 2010 Aug;99(8):1128-30. Cannell JJ, 2010

      Cannell JJ. Autism and vitamin D. Med Hypotheses. 2008;70(4):750-9. Cannell JJ, 2008

      70% of American toddlers do not take


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    1. On 2013 Oct 31, John Cannell commented:

      The authors found markers oxidative stress is present in autism spectrum disorder (ASD). I wonder if the authors are aware that the genes for the antioxidants superoxide dismutase and thioredoxin reductase are directly up-regulated by the secosteroid 1,25 di-hydroxy vitamin D3 (calcitriol). I believe both genes also harbor a vitamin D response element.

      Peehl DM, Shinghal R, Nonn L, Seto E, Krishnan AV, Brooks JD, Feldman D. Molecular activity of 1,25‐dihydroxyvitamin D3 in primary cultures of human prostatic epithelial cells revealed by cDNA microarray analysis. J. Steroid Biochem Mol. Biol 2004;92:131–141. PMID:15555907>

      Calcitriol also directly up-regulates glutathione reductase and increases glutathione levels.

      Jain SK, et alo. Vitamin D upregulates glutamate cysteine ligase and glutathione reductase, and GSH formation, and decreases ROS and MCP-1 and IL-8 secretion in high-glucose exposed U937 monocytes. Biochem Biophys Res Commun. 2013 Jul 19;437(1):7-11. doi: 10.1016/j.bbrc.2013.06.004. Jain SK, 2013

      Also, supplemental vitamin D significantly reduces oxidative stress in humans.

      Nikooyeh B, et al. Daily intake of vitamin D- or calcium-vitamin D-fortified Persian yogurt drink (doogh) attenuates diabetes-induced oxidative stress: evidence for antioxidative properties of vitamin D.J Hum Nutr Diet. 2013 Jul 5. doi: 10.1111/jhn.12142. Nikooyeh B, 2014

      Asemi Z, et al. Vitamin D supplementation affects serum high-sensitivity C-reactive protein, insulin resistance, and biomarkers of oxidative stress in pregnant women. J Nutr. 2013 Sep;143(9):1432-8. doi: 10.3945/jn.113.177550. Asemi Z, 2013

      Thus the vitamin D theory of ASD (vitamin D deficiency being the environmental risk factor for this highly heritable disorder) is consistent with the authors work. Three recent studies, using community controls, have found 25(OH)D levels are significantly lower in children with ASD. Two of the studies below (Mostafa et al and Gong et al) also found ASD severity, as rated on standard ASD rating scales, is inversely correlated with 25(OH)D levels. Mostafa et al found an R value of -.86 for the association of serum 25(OH)D with ASD severity.

      Gong ZL, Luo CM, Wang L, Shen L, Wei F, Tong RJ, Liu Y. Serum 25-hydroxyvitamin D levels in Chinese children with autism spectrum disorders. Neuroreport. 2013 Oct 1. Gong ZL, 2014

      Meguid NA, Hashish AF, Anwar M, Sidhom G. Reduced serum levels of 25-hydroxy and 1,25-dihydroxy vitamin D in Egyptian children with autism. J Altern Complement Med. 2010 Jun;16(6):641-5. Meguid NA, 2010

      Mostafa GA, Al-Ayadhi LY.Reduced serum concentrations of 25-hydroxy vitamin D in children with autism: relation to autoimmunity. J Neuroinflammation. 2012 Aug 17;9:201. Mostafa GA, 2012

      There is a plethora of basic science explaining why low gestational or early childhood 25(OH)D levels would adversely effect brain development.

      Eyles DW, Feron F, Cui X, Kesby JP, Harms LH, Ko P, McGrath JJ, Burne TH. Developmental vitamin D deficiency causes abnormal brain development. Psychoneuroendocrinology. 2009 Dec;34 Suppl 1:S247-57. doi: 10.1016/j.psyneuen.2009.04.015. Epub . Review. Eyles DW, 2009

      DeLuca GC, Kimball SM, Kolasinski J, Ramagopalan SV, Ebers GC. Review: the role of vitamin D in nervous system health and disease. Neuropathol Appl Neurobiol. 2013 Aug;39(5):458-84. doi: 10.1111/nan.12020. DeLuca GC, 2013

      Eyles DW, Burne TH, McGrath JJ. Vitamin D, effects on brain development, adult brain function and the links between low levels of vitamin D and neuropsychiatric disease. Front Neuroendocrinol. 2013 Jan;34(1):47-64. doi: 10.1016/j.yfrne.2012.07.001. Epub 2012 Jul 11. Review. Eyles DW, 2013

      Furthermore, the vitamin D theory of autism explains most of the epidemiological facts of ASD.

      Cannell JJ. On the aetiology of autism. Acta Paediatr. 2010 Aug;99(8):1128-30. Cannell JJ, 2010

      Cannell JJ. Autism and vitamin D. Med Hypotheses. 2008;70(4):750-9. Cannell JJ, 2008

      70% of American toddlers do not take the Ameri


      This comment, imported by Hypothesis from PubMed Commons, is licensed under CC BY.

    1. On 2013 Oct 31, John Cannell commented:

      The authors stated that markers of oxidative stress are present in autism spectrum disorder (ASD). I wonder if the authors are aware that the genes for the antioxidants superoxide dismutase and thioredoxin reductase are directly up-regulated by the secosteroid 1,25 di-hydroxy vitamin D3 (calcitriol). I believe both genes also harbor a vitamin D response element.

      Peehl DM, Shinghal R, Nonn L, Seto E, Krishnan AV, Brooks JD, Feldman D. Molecular activity of 1,25‐dihydroxyvitamin D3 in primary cultures of human prostatic epithelial cells revealed by cDNA microarray analysis. J. Steroid Biochem Mol. Biol 2004;92:131–141. PMID:15555907>

      Calcitriol also directly up-regulates glutathione reductase and increases glutathione levels.

      Jain SK, et alo. Vitamin D upregulates glutamate cysteine ligase and glutathione reductase, and GSH formation, and decreases ROS and MCP-1 and IL-8 secretion in high-glucose exposed U937 monocytes. Biochem Biophys Res Commun. 2013 Jul 19;437(1):7-11. doi: 10.1016/j.bbrc.2013.06.004. Jain SK, 2013

      Also, supplemental vitamin D significantly reduces oxidative stress in humans.

      Nikooyeh B, et al. Daily intake of vitamin D- or calcium-vitamin D-fortified Persian yogurt drink (doogh) attenuates diabetes-induced oxidative stress: evidence for antioxidative properties of vitamin D.J Hum Nutr Diet. 2013 Jul 5. doi: 10.1111/jhn.12142. Nikooyeh B, 2014

      Asemi Z, et al. Vitamin D supplementation affects serum high-sensitivity C-reactive protein, insulin resistance, and biomarkers of oxidative stress in pregnant women. J Nutr. 2013 Sep;143(9):1432-8. doi: 10.3945/jn.113.177550. Asemi Z, 2013

      Thus the vitamin D theory of ASD (vitamin D deficiency being the environmental risk factor for this highly heritable disorder) is consistent with the authors work. Three recent studies, using community controls, have found 25(OH)D levels are significantly lower in children with ASD. Two of the studies below (Mostafa et al and Gong et al) also found ASD severity, as rated on standard ASD rating scales, is inversely correlated with 25(OH)D levels. Mostafa et al found an R value of -.86 for the association of serum 25(OH)D with ASD severity.

      Gong ZL, Luo CM, Wang L, Shen L, Wei F, Tong RJ, Liu Y. Serum 25-hydroxyvitamin D levels in Chinese children with autism spectrum disorders. Neuroreport. 2013 Oct 1. Gong ZL, 2014

      Meguid NA, Hashish AF, Anwar M, Sidhom G. Reduced serum levels of 25-hydroxy and 1,25-dihydroxy vitamin D in Egyptian children with autism. J Altern Complement Med. 2010 Jun;16(6):641-5. Meguid NA, 2010

      Mostafa GA, Al-Ayadhi LY.Reduced serum concentrations of 25-hydroxy vitamin D in children with autism: relation to autoimmunity. J Neuroinflammation. 2012 Aug 17;9:201. Mostafa GA, 2012

      There is a plethora of basic science explaining why low gestational or early childhood 25(OH)D levels would adversely effect brain development.

      Eyles DW, Feron F, Cui X, Kesby JP, Harms LH, Ko P, McGrath JJ, Burne TH. Developmental vitamin D deficiency causes abnormal brain development. Psychoneuroendocrinology. 2009 Dec;34 Suppl 1:S247-57. doi: 10.1016/j.psyneuen.2009.04.015. Epub . Review. Eyles DW, 2009

      DeLuca GC, Kimball SM, Kolasinski J, Ramagopalan SV, Ebers GC. Review: the role of vitamin D in nervous system health and disease. Neuropathol Appl Neurobiol. 2013 Aug;39(5):458-84. doi: 10.1111/nan.12020. DeLuca GC, 2013

      Eyles DW, Burne TH, McGrath JJ. Vitamin D, effects on brain development, adult brain function and the links between low levels of vitamin D and neuropsychiatric disease. Front Neuroendocrinol. 2013 Jan;34(1):47-64. doi: 10.1016/j.yfrne.2012.07.001. Epub 2012 Jul 11. Review. Eyles DW, 2013

      Furthermore, the vitamin D theory of autism explains most of the epidemiological facts of ASD.

      Cannell JJ. On the aetiology of autism. Acta Paediatr. 2010 Aug;99(8):1128-30. Cannell JJ, 2010

      Cannell JJ. Autism and vitamin D. Med Hypotheses. 2008;70(4):750-9. Cannell JJ, 2008

      70% of American toddlers do not take


      This comment, imported by Hypothesis from PubMed Commons, is licensed under CC BY.

    1. On 2013 Oct 31, John Cannell commented:

      The authors stated that markers of oxidative stress are present in autism spectrum disorder (ASD). I wonder if the authors are aware that the genes for the antioxidants superoxide dismutase and thioredoxin reductase are directly up-regulated by the secosteroid 1,25 di-hydroxy vitamin D3 (calcitriol). I believe both genes also harbor a vitamin D response element.

      Peehl DM, Shinghal R, Nonn L, Seto E, Krishnan AV, Brooks JD, Feldman D. Molecular activity of 1,25‐dihydroxyvitamin D3 in primary cultures of human prostatic epithelial cells revealed by cDNA microarray analysis. J. Steroid Biochem Mol. Biol 2004;92:131–141. PMID:15555907>

      Calcitriol also directly up-regulates glutathione reductase and increases glutathione levels.

      Jain SK, et alo. Vitamin D upregulates glutamate cysteine ligase and glutathione reductase, and GSH formation, and decreases ROS and MCP-1 and IL-8 secretion in high-glucose exposed U937 monocytes. Biochem Biophys Res Commun. 2013 Jul 19;437(1):7-11. doi: 10.1016/j.bbrc.2013.06.004. Jain SK, 2013

      Also, supplemental vitamin D significantly reduces oxidative stress in humans.

      Nikooyeh B, et al. Daily intake of vitamin D- or calcium-vitamin D-fortified Persian yogurt drink (doogh) attenuates diabetes-induced oxidative stress: evidence for antioxidative properties of vitamin D.J Hum Nutr Diet. 2013 Jul 5. doi: 10.1111/jhn.12142. Nikooyeh B, 2014

      Asemi Z, et al. Vitamin D supplementation affects serum high-sensitivity C-reactive protein, insulin resistance, and biomarkers of oxidative stress in pregnant women. J Nutr. 2013 Sep;143(9):1432-8. doi: 10.3945/jn.113.177550. Asemi Z, 2013

      Thus the vitamin D theory of ASD (vitamin D deficiency being the environmental risk factor for this highly heritable disorder) is consistent with the authors work. Three recent studies, using community controls, have found 25(OH)D levels are significantly lower in children with ASD. Two of the studies below (Mostafa et al and Gong et al) also found ASD severity, as rated on standard ASD rating scales, is inversely correlated with 25(OH)D levels. Mostafa et al found an R value of -.86 for the association of serum 25(OH)D with ASD severity.

      Gong ZL, Luo CM, Wang L, Shen L, Wei F, Tong RJ, Liu Y. Serum 25-hydroxyvitamin D levels in Chinese children with autism spectrum disorders. Neuroreport. 2013 Oct 1. Gong ZL, 2014

      Meguid NA, Hashish AF, Anwar M, Sidhom G. Reduced serum levels of 25-hydroxy and 1,25-dihydroxy vitamin D in Egyptian children with autism. J Altern Complement Med. 2010 Jun;16(6):641-5. Meguid NA, 2010

      Mostafa GA, Al-Ayadhi LY.Reduced serum concentrations of 25-hydroxy vitamin D in children with autism: relation to autoimmunity. J Neuroinflammation. 2012 Aug 17;9:201. Mostafa GA, 2012

      There is a plethora of basic science explaining why low gestational or early childhood 25(OH)D levels would adversely effect brain development.

      Eyles DW, Feron F, Cui X, Kesby JP, Harms LH, Ko P, McGrath JJ, Burne TH. Developmental vitamin D deficiency causes abnormal brain development. Psychoneuroendocrinology. 2009 Dec;34 Suppl 1:S247-57. doi: 10.1016/j.psyneuen.2009.04.015. Epub . Review. Eyles DW, 2009

      DeLuca GC, Kimball SM, Kolasinski J, Ramagopalan SV, Ebers GC. Review: the role of vitamin D in nervous system health and disease. Neuropathol Appl Neurobiol. 2013 Aug;39(5):458-84. doi: 10.1111/nan.12020. DeLuca GC, 2013

      Eyles DW, Burne TH, McGrath JJ. Vitamin D, effects on brain development, adult brain function and the links between low levels of vitamin D and neuropsychiatric disease. Front Neuroendocrinol. 2013 Jan;34(1):47-64. doi: 10.1016/j.yfrne.2012.07.001. Epub 2012 Jul 11. Review. Eyles DW, 2013

      Furthermore, the vitamin D theory of autism explains most of the epidemiological facts of ASD.

      Cannell JJ. On the aetiology of autism. Acta Paediatr. 2010 Aug;99(8):1128-30. Cannell JJ, 2010

      Cannell JJ. Autism and vitamin D. Med Hypotheses. 2008;70(4):750-9. Cannell JJ, 2008

      70% of American toddlers do not take


      This comment, imported by Hypothesis from PubMed Commons, is licensed under CC BY.

    1. On 2016 Jan 08, Tom Kindlon commented:

      This study uses the (so-called) empiric CFS criteria (Reeves et al., 2005)

      Although they don't make it very clear, this study used the Reeves et al. (2005) criteria(1) for defining Chronic Fatigue Syndrome (CFS) (sometimes described by the CDC as an operationalization of the Fukuda et al. (1994) criteria (2)). This can be seen by examining the Reeves et al. (2007) paper on the Georgia cohort (2).

      These (Reeves) criteria greatly increased the prevalence of CFS. The "empirical" definition gives a prevalence rate of 2.54% of the adult population(3) compared to 0.235% (95% confidence interval, 0.142%-0.327%) and 0.422% (95% confidence interval, 0.29%-0.56%) when the Fukuda definition (3) was used in previous population studies in the US(4,5).

      The definition lacks specificity. For example, one research study(6) found that 38% of those with a diagnosis of a Major Depressive Disorder were misclassified as having CFS using the empirical/Reeves definition. A letter of mine discussed my concerns in more detail(7).

      Due to the problems with the criteria, these criteria have not been used by researchers outside those contracted to analyse CDC data (apart from Leonard Jason's research team who studied it and showed problems with it (6)).

      References:

      1 Reeves WC, Wagner D, Nisenbaum R, Jones JF, Gurbaxani B, Solomon L, Papanicolaou DA, Unger ER, Vernon SD, Heim C. Chronic fatigue syndrome – a clinically empirical approach to its definition and study. BMC Med. 2005;3:19.

      2 Reeves WC, Jones JF, Maloney E, Heim C, Hoaglin DC, Boneva RS, Morrissey M, Devlin R. Prevalence of chronic fatigue syndrome in metropolitan, urban, and rural Georgia. Popul Health Metr. 2007 Jun 8;5:5.

      3 Fukuda K, Straus SE, Hickie I, Sharpe MC, Dobbins JG, Komaroff A. The chronic fatigue syndrome; a comprehensive approach to its definition and study. Ann Int Med 1994, 121:953-959.

      4 Reyes M, Nisenbaum R, Hoaglin DC, Unger ER, Emmons C, Randall B, Stewart JA, Abbey S, Jones JF, Gantz N, Minden S, Reeves WC: Prevalence and incidence of chronic fatigue syndrome in Wichita, Kansas. Arch Int Med 2003, 163:1530-1536.

      5 Jason LA, Richman JA, Rademaker AW, Jordan KM, Plioplys AV, Taylor RR, McCready W, Huang CF, Plioplys S. A community-based study of chronic fatigue syndrome. Arch Intern Med. 1999 Oct 11;159(18):2129-37.

      6 Jason, LA, Najar N, Porter N, Reh C. Evaluating the Centers for Disease Control's empirical chronic fatigue syndrome case definition. Journal of Disability Policy Studies 2008, doi:10.1177/1044207308325995.

      7 Kindlon T. Criteria used to define chronic fatigue syndrome questioned. Psychosom Med. 2010 Jun;72(5):506-7


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    1. On 2013 Dec 20, Raphael Stricker commented:

      Fatal Clostridium Difficile Colitis Following Treatment for Lyme Disease: The Wrong Message.

      Raphael B. Stricker, MD* and Lorraine Johnson, JD, MBA*

      *International Lyme and Associated Diseases Society, P.O. Box 341461, Bethesda, MD 20827-1461. www.ILADS.org

      Holzbauer and colleagues (1) describe a case of fatal Clostridium difficile colitis in a patient treated with ten weeks of oral antibiotics for chronic Lyme disease. Rather than focusing on patient-specific risk factors and prevention of antibiotic-related complications, the authors preach about the dangers of treating Lyme disease outside the controversial guidelines of the Infectious Diseases Society of America (IDSA), which were the subject of an antitrust investigation by the Connecticut Attorney General (2,3). In doing so, the authors exaggerate the risks of treating Lyme disease and ignore the risks of failing to treat an ongoing spirochetal infection that may cause disability equivalent to congestive heart failure, and even death (4,5). Consequently the emphasis of the case report is misguided and ultimately detrimental to patient care.

      In the single case described here, no information is given about cellular or humoral immune dysfunction that may have contributed to the rapid demise of the 52-year-old patient. This rapid demise is unusual in patients less than 80 years old with C. difficile colitis (6) and suggests the presence of a hypervirulent C. difficile ribotype that might explain the clinical course. Furthermore, the authors fail to mention whether the patient received probiotic therapy during the extended oral antibiotic treatment. Probiotic therapy appears to be effective in avoiding antibiotic-induced complications, and evidence suggests that certain probiotics may neutralize C. difficile toxin (7,8). The lack of probiotic therapy may have been a significant factor in this patient’s demise.

      As for the appropriateness of antibiotic therapy in a patient with clinical and laboratory evidence of chronic Lyme disease, two points should be considered. First, two approaches to treatment of this tickborne illness have been described in the medical literature. The approach promulgated by IDSA proscribes extended antibiotic therapy for persistent symptoms related to infection with Borrelia burgdorferi, the spirochetal agent of Lyme disease (2). In contrast, the competing approach of the International Lyme and Associated Diseases Society (ILADS) considers this therapy to be appropriate based on evidence of persistent spirochetal infection (4,9,10). Second, the patient described in the report received a course of oral antibiotics that is shorter than the antibiotic courses endorsed or accepted by IDSA for chronic conditions such as tuberculosis, leprosy, complicated actinomycosis, Whipple’s disease, Q fever endocarditis, alveolar echinococcosis, osteomyelitis and asplenia prophylaxis; the risks of prolonged antibiotic therapy are considered acceptable for these conditions (11-18). While several clinical studies have demonstrated the safety of extended oral and intravenous antibiotic therapy for patients diagnosed with Lyme disease (19-22), caution should always be exercised in administering extended antibiotic therapy to any patient with a chronic infectious disease.

      References

      1. Holzbauer SM, Kemperman MM, Lynfield R. Death due to community-associated Clostridium difficile in a woman receiving prolonged antibiotic therapy for suspected Lyme disease. Clin Infect Dis 2010;51:369-70.

      2. Johnson L, Stricker RB. The Infectious Diseases Society of America Lyme guidelines: a cautionary tale about development of clinical practice guidelines. Philos Ethics Humanit Med 2010;5:9.

      3. Johnson L, Stricker RB. Final report of the Lyme Disease Review Panel of the Infectious Diseases Society of America: A Pyrrhic victory? Clin Infect Dis 2010;51:1108-9.

      4. Cameron DJ. Proof that chronic Lyme disease exists. Interdiscip Perspect Infect Dis 2010;2010:876450.

      5. Centers for Disease Control and Prevention (CDC). Three sudden cardiac deaths associated with Lyme carditis - United States, November 2012-July 2013. MMWR Morb Mortal Wkly Rep. 2013;62:993-6.

      6. Kotila SM, Virolainen A, Snellman M, Ibrahem S, Jalava J, Lyytikäinen O. Incidence, case fatality and genotypes causing Clostridium difficile infections, Finland, 2008. Clin Microbiol Infect 2011;17:888-93.

      7. McFarland LV. Meta-analysis of probiotics for the prevention of antibiotic associated diarrhea and the treatment of Clostridium difficile disease. Am J Gastroenterol 2006;101:812-22.

      8. Castagliuolo I, Riegler MF, Valenick L, LaMont JT, Pothoulakis C. Saccharomyces boulardii protease inhibits the effects of Clostridium difficile toxins A and B in human colonic mucosa. Infect Immun 1999;67:302-7.

      9. Stricker RB. Counterpoint: Long-term antibiotic therapy improves persistent symptoms associated with Lyme disease. Clin Infect Dis 2007;45:149-57.

      10. Stricker RB, Johnson L. Lyme disease: The next decade. Infect Drug Resist 2011;4:1–9.

      11. Small PM, Fujiwara PI. Management of tuberculosis in the United States. N Engl J Med 2001;345:189-200.

      12. Cox H, Kebede Y, Allamuratova S, Ismailov G, Davletmuratova Z, Byrnes G, Stone C, Niemann S, Rüsch-Gerdes S, Blok L, Doshetov D. Tuberculosis recurrence and mortality after successful treatment: impact of drug resistance. PLoS Med 2006;3:e384.

      13. Garner JP, Macdonald M, Kumar PK. Abdominal actinomycosis. Int J Surg 2007;5:441-8.

      14. Freeman HJ. Tropheryma whipplei infection. World J Gastroenterol 2009;15:2078-80.

      15. Liu YH, Wang XG, Gao JS, Qingyao Y, Horton J. Continuous albendazole therapy in alveolar echinococcosis: long-term follow-up observation of 20 cases. Trans R Soc Trop Med Hyg 2009;103:768-78.

      16. Lazzarini L, Lipsky BA, Mader JT. Antibiotic treatment of osteomyelitis: what have we learned from 30 years of clinical trials? Int J Infect Dis 2005;9:127-38.

      17. Price VE, Blanchette VS, Ford-Jones EL.The prevention and management of infections in children with asplenia or hyposplenia. Infect Dis Clin North Am 2007;21:697-710, viii-ix.

      18. Beytout J, Tournilhac O, Laurichesse H. Antibiotic prophylaxis in splenectomized adults. Presse Med 2003;32(28 Suppl):S17-9.

      19. Donta ST. Tetracycline therapy for chronic Lyme disease. Clin Infect Dis 1997;25 Suppl 1:S52-6.

      20. Donta ST. Macrolide therapy of chronic Lyme disease. Med Sci Monit 2003;9:PI136-42.

      21. Stricker RB, Green CL, Savely VR, Chamallas SN, Johnson L. Safety of intravenous antibiotic therapy in patients referred for treatment of neurologic Lyme disease. Minerva Med 2010; 101:1–7.

      22. Stricker RB, Delong AK, Green CL, Savely VR, Chamallas SN, Johnson L. Benefit of intravenous antibiotic therapy in patients referred for treatment of neurologic Lyme disease. Int J Gen Med 2011;4:639-46.

      Disclosure: RBS is a member of the International Lyme and Associated Diseases Society (ILADS) and a director of LymeDisease.org. He has no financial or other conflicts to declare.


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    1. On 2016 Sep 19, Morten Oksvold commented:

      Please note that a rather extensive correction was published 7 December 2011: "The wrong images were mistakenly presented for day 3 for the wild-type and the racX ylmE double mutant in figure S4. The original and correct images are now shown. Also, the wrong image was presented for the mixture of L-amino acids in panel B of fig. S13 and has now been removed."

      In 2013, the Losick group published results showing that D-amino acids inhibited bacterial growth and the expression of biofilm matrix genes and that the strain they originally used to study biofilm formation (B. subtilis) has a mutation in the D-tyrosyl-tRNA deacylase gene, an enzyme that prevents the misincorporation of D-amino acids into protein (Leiman et al., 2013). In a B. subtilis strain, which has a working copy of this gene, D–amino acids did not inhibit biofilm formation. The conclusion from their study was that "the susceptibility of B. subtilis to the biofilm-inhibitory effects of D-amino acids is largely, if not entirely, due to their toxic effects on protein synthesis.

      Does that mean that they no longer see D-amino acids as a specific mechanism to disassemble biofilms in B. subtilis but rather as nonspecific inhibitors of growth in some genetic backgrounds?

      Leiman et al. (2013) make no comment on the ability of D-amino acids to inhibit biofilm formation in staphylococcus aureus and Pseudomonas aeruginosa, as claimed in this article. The whole concept of biofilm dissasembly by D-amino acids therefore appears confusing.

      It was recently published an article showing that D-amino acids do not inhibit biofilm formation in Staphylococcus aureus (Sarkar S and Pires MM, 2015).


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    1. On 2014 Jan 06, Tom Kindlon commented:

      Why are we only given information on 3 out of the 8 SF-36 subscales?

      Reading this paper, one could be forgiven for thinking that the SF-36 questionnaire only has 3 subscales: Physical Functioning, Mental Health and Social Functioning as that is all we are given information on. In fact, of course, the SF-36 questionnaire has 8 subscales: Physical function, Role physical, Bodily pain, General health, Vitality, Social function, Role emotional and Mental health[1]. The authors use the empiric definition for CFS[2] which requires at a minimum that the "role physical" and "role emotional" subscales also be measured. We also know that all 8 subscales were measured in this cohort[3]. So why was the information not given?

      If one was not giving the authors the benefit of the doubt, one could speculate that it was because Table 4 would not look as good, as the Chi-squared calculations would not reach statistical significance for the missing data. But that would be speculation - there could be other reasons for the missing information.

      Perhaps the authors could post the relevant data now.

      I am not simply being mischievous - I would be interested in particular to see what are the scores for Classes 1 and 2 which include nearly all of the CFS patients (88/92, 95.7%).

      References:

      [1] Ware JE, Sherbourne CD: The MOS 36-item short form health survey (SF-36): conceptual framework and item selection. Med Care 1992, 30:473-483.

      [2] Reeves WC, Wagner D, Nisenbaum R, Jones JF, Gurbaxani B, Solomon L, Papanicolaou DA, Unger ER, Vernon SD, Heim C: Chronic fatigue syndrome--a clinically empirical approach to its definition and study. BMC Medicine 2005, 3:19.

      [3] An evaluation of exclusionary medical/psychiatric conditions in the definition of chronic fatigue syndrome. Jones JF, Lin JM, Maloney EM, Boneva RS, Nater UM, Unger ER, Reeves WC. BMC Med. 2009 Oct 12;7(1):57. - see Tables 5 and 6.


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    2. On 2014 Jan 06, Tom Kindlon commented:

      There has been criticism of how CFS is defined in this study

      I thought it would be useful to point out that there is controversy [1,2] with regard to the criteria [3] used in this study to define Chronic Fatigue Syndrome (CFS).

      For example, the criteria for CFS used in this study do not even require a patient to have fatigue. The authors say: “We used the Multidimensional Fatigue Inventory (MFI-20) [4] to measure characteristics of fatigue” but they do not give the thresholds. Given the MFI-20 has five subscales: (General fatigue, Physical fatigue, Mental fatigue, Activity reduction and Motivation reduction), one would probably suspect that a patient would have to score poorly on one of the headings which have fatigue in their title. But the actual criteria are: a patient needs to score >=13 on MFI general fatigue or >=10 on reduced activity. Note, one could score >=10 on the MFI reduced activity questions without necessarily being fatigued (one could be depressed or even lazy) (only current major depressive disorder with melancholic features (MDDm) is an exclusion for this definition of CFS).

      This is despite the fact that in the current paper, the authors say: “Chronic fatigue syndrome (CFS) is a common, debilitating illness whose hallmark symptoms involve fatigue and fatigability”. Many other questions have been raised about the criteria for CFS that were used in this study. For example, the authors only considered current MDDm to be exclusionary for CFS while the International CFS Study group recommended that conditions (including MDDm) were considered exclusions unless they had been “resolved for more than 5 years before the onset of the current chronically fatiguing illness”[5].

      Prevalence figures show that the criteria, that were used for this cohort, are selecting a broader group than previous criteria for CFS. Based on the figures derived from this cohort, the prevalence of CFS was estimated at 2.54% [6]. Other studies using similar methodology (but which did not operationalize the criteria [7] for the CFS in the same way as this study) estimated the prevalence of CFS to be 0.235% (95% confidence interval, 0.142%-0.327%) and 0.422% (95% confidence interval, 0.29%-0.56%) [8,9].

      References:

      [1]. Jason LA, & Richman JA. How science can stigmatize: The case of chronic fatigue syndrome. Journal of CFS 2007;14:85-103.

      [2]. Jason LA, Najar N, Porter N, Reh C. Evaluating the Centers for Disease Control's empirical chronic fatigue syndrome case definition. Journal of Disability Policy Studies 2009;20;93.

      [3]. Reeves WC, Wagner D, Nisenbaum R, Jones JF, Gurbaxani B, Solomon L, Papanicolaou DA, Unger ER, Vernon SD, Heim C: Chronic fatigue syndrome--a clinically empirical approach to its definition and study. BMC Medicine 2005, 3:19.

      [4]. Smets EM, Garssen B, Bonke B, De Haes JC. The multidimensional fatigue inventory (MFI) psychometric qualities of an instrument to assess fatigue. J Psychosom Res 1995; 39: 315–25.

      [5]. Reeves WC, Lloyd A, Vernon SD, Klimas N, Jason LA, Bleijenberg G, Evengard B, White PD, Nisenbaum R, Unger ER; International Chronic Fatigue Syndrome Study Group. Identification of ambiguities in the 1994 chronic fatigue syndrome research case definition and recommendations for resolution. BMC Health Serv Res. 2003 Dec 31;3(1):25.

      [6]. Reeves WC, Jones JF, Maloney E, Heim C, Hoaglin DC, Boneva RS, Morrissey M, Devlin R. Prevalence of chronic fatigue syndrome in metropolitan, urban, and rural Georgia. Popul Health Metr. 2007 Jun 8;5:5.

      [7]. Fukuda K, Straus SE, Hickie I, Sharpe MC, Dobbins JG, Komaroff A. The chronic fatigue syndrome; a comprehensive approach to its definition and study. Ann Int Med 1994, 121:953-959.

      [8]. Reyes M, Nisenbaum R, Hoaglin DC, Unger ER, Emmons C, Randall B, Stewart JA, Abbey S, Jones JF, Gantz N, Minden S, Reeves WC: Prevalence and incidence of chronic fatigue syndrome in Wichita, Kansas. Arch Int Med 2003, 163:1530-1536.

      [9]. Jason LA, Richman JA, Rademaker AW, Jordan KM, Plioplys AV, Taylor RR, McCready W, Huang CF, Plioplys S. A community-based study of chronic fatigue syndrome. Arch Intern Med. 1999 Oct 11;159(18):2129-37.


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    3. On 2014 Jan 06, Tom Kindlon commented:

      A more detailed comparison would need to be made before one could say this replicates the previous study

      Part of the aim of this study [1] appears to be to compare the classes that were drawn up with a previous cohort[2-4]. However it does not, to my mind, deal with this in a particularly rigorous fashion. The main quantitative comparisons are the percentages that fall in each class (Tables 6 and 7). However, the percentages will be influenced by the quantity and type of non-CFS controls used which are not the same in each cohort [to explain why this is important using an extreme example: if there were 1000 non-CFS cases for everyone one CFS case in one cohort, the percentages in each class would be different than if there was a 1:1 ratio of CFS to non-CFS cases in the other cohort].

      The first study involved the following[5]: "This population-based case control study enrolled 227 adults identified from the population of Wichita with: (1) CFS (n = 58); (2) non-fatigued controls matched to CFS on sex, race, age and body mass index (n = 55); (3) persons with medically unexplained fatigue not CFS, which we term ISF (n = 59); (4) CFS accompanied by melancholic depression (n = 27); and (5) ISF plus melancholic depression (n = 28)." This was based on the classification in 1997-2000. These were then assessed during 2003. As one can see in Table 2, in 2003, 6 out of the original 58 CFS patients satisfied the CFS definition[6] as originally operationalized, along with 4 out of the controls. 6 more who had previously been excluded because of previous diagnosis of Major Depressive Disorder with melancholic features (MDDm) were also said to satisfy the original CFS diagnosis. The method for operationalizing the CFS definition[6] was then changed so there was then 43 individuals with CFS (see Table 5). Although the same method[5] of operationalizing the CFS definition[6] is used when comparing the Wichita and Georgia cohorts, it is a very different way to select patients and controls than the current study[1]. So it is questionable how interesting it is to compare the percentages in each class.

      A comparison of the percentages of CFS in each class might have been interesting but that was not done.

      Also, apart from the percentages, no tables with quantitative information are presented in the current paper to help the reader compare the class groups to see how valid the comparisons are. This is made more difficult because the original study gave much more detailed data on the six class solution rather than the five class solution [2]: "As the five- and six-class solutions produced practically identical classes, with the exception of the fifth group in the five-class solution being divided into the fifth and sixth classes in the six-class solution, only the six-class solution is presented in Table 2."

      So in that paper, one has classes which have a median BMI of 32, 30 and 30 which are described in the current paper[1] as obese classes while class 5 would be a combination of classes 5 and 6 which have a median BMI of 26 and 27 are classed as non-obese. So numerical comparisons would have been of more use rather than looking at verbal descriptions - describing two groups which have a median BMI of 30 as obese (so approx 50% would have a BMI under 30, one threshold for obesity) and another group which has a median BMI of around 26.5 as non-obese, seems a bit unsatisfactory. There is a 5 class LCA solution in Figure 1 in one of the Wichita papers which gives some verbal descriptions[4]. As one can see, "obese" is only used to describe two of the five LCA groups: - Obese, hypnoea (27.93%) - Obese, hypnoea and stressed (15.32%) - Interoception (16.22%) - Interoception, depression (19.82%) - Well (20.72%)

      However, this does not seem to be the same five class solution for the Wichita cohort as the one described in this paper as the percentages don't match up.

      References:

      [1]. Aslakson E, Vollmer-Conna U, Reeves WC, White PD. Replication of an empirical approach to delineate the heterogeneity of chronic unexplained fatigue. Popul Health Metr. 2009 Oct 5;7:17.

      [2]. Vollmer-Conna U, Aslakson E, White PD: An empirical delineation of the heterogeneity of chronic unexplained fatigue in women. Pharmacogenomics 2006, 7(3):355-364.

      [3]. Aslakson E, Vollmer-Conna U, White PD. The validity of an empirical delineation of heterogeneity in chronic unexplained fatigue. Pharmacogenomics. 2006 Apr;7(3):365-73.

      [4]. Carmel L, Efroni S, White PD, Aslakson E, Vollmer-Conna U, Rajeevan MS. Gene expression profile of empirically delineated classes of unexplained chronic fatigue. Pharmacogenomics. 2006 Apr;7(3):375-86.

      [5]. Reeves WC, Wagner D, Nisenbaum R, Jones JF, Gurbaxani B, Solomon L, Papanicolaou DA, Unger ER, Vernon SD, Heim C. Chronic fatigue syndrome--a clinically empirical approach to its definition and study. BMC Med. 2005 Dec 15;3:19.

      [6]. Fukuda K, Straus SE, Hickie I, Sharpe MC, Dobbins JG, Komaroff A: The chronic fatigue syndrome; a comprehensive approach to its definition and study. Ann Int Med 1994, 121:953-959.


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    1. On 2015 Oct 02, Simon Young commented:

      This is an interesting review but omits some important manuscripts. For example, in the section on the effect of tryptophan loading on mood in healthy volunteers there is no mention of several relevant studies Leathwood PD, 1982, Charney DS, 1982, Greenwood MH, 1974, SMITH B, 1962. The same is true for studies on the effect of tryptophan on sleep Griffiths WJ, 1972, Hartmann E, 1977, Adam K, 1979. The statement in the section 4.1 that “there is little consensus in terms of Trp’s efficacy in treating depression” is not universally accepted. A Cochrane Database Systematic Review concluded that the available evidence suggests that tryptophan is better than placebo at alleviating depression Shaw K, 2002, and tryptophan has been available as a prescription drug for the treatment of depression in a number of countries. The Cochrane Database Systematic Review includes a number of studies not included in the article.


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    1. On 2013 Dec 06, Tom Kindlon commented:

      Differences in medication usage in the Wichita and Georgia cohorts could be due to the different methods of operationalizing the Fukuda criteria that were used

      Medication usage was not the same in the CFS populations found in the Wichita and Georgia populations.

      The authors summarise the similarities and differences in the following paragraph:

      “Our findings confirm those from a previous study of medication use in persons with CFS from Wichita, Kansas. Both studies found significantly higher usage of pain relievers, gastrointestinal drugs, antidepressants and benzodiazepines by persons with CFS compared to Well controls. Unlike the Wichita study, though, persons with CFS in Georgia were not significantly more likely than controls to use hormones and supplements but were significantly more likely than controls to use muscle relaxants and anti-allergy and cold/sinus medications. Overall, compared to persons with CFS from the Wichita study7, a smaller proportion of persons with CFS in Georgia used pain-relievers (65.5% in Georgia vs. 87.8% in Wichita), supplements/vitamins (44.3% vs. 62.2%), antidepressants (36.3% vs. 41.1%), antibiotics (7.1% vs. 16.7%), hormones (43.4% vs. 52.5%. among women only, 11.8% among all CFS), antihypertensive drugs (17.7% vs. 21.1%), muscle relaxants (8.9% vs. 12.2%), anti-asthma medications (7.1% vs. 12.2%), glucose-lowering drugs (0.9% vs. 4.4%.). Use of other prescription drug categories such as lipid-lowering drugs (11.5% vs.12.2%) and benzodiazepines (12.4%, vs. 11.1% respectively) was similar in Georgia and Wichita (Kansas). The relatively lower usage of most prescription drug medications by persons with CFS in Georgia compared to Wichita may reflect lower seeking of, or lower access to, health care.”

      An alternative reason could be that the two sets of criteria for CFS used were not selecting the same type of patients.

      The current study[1] uses the empiric definition for CFS[2]. As one can see from the paper that gives the criteria involved in the empiric definition, although it is also based on the Fukuda definition[3], a different number of patients satisfy the criteria [2] compared to how the authors used the definition in the initial study of the Wichita population.

      This change looks more significant when one looks at the prevalence rates for CFS obtained in the two cohorts. In the Wichita study[4], the prevalence of CFS was 0.235% (95% confidence interval, 0.142%-0.327%). In the Georgia study[5], the prevalence of CFS was 2.54%, 10.8 times the prevalence in the Wichita study!

      Concerns have been raised[6,7] about the newer method[2] of operationalizing the Fukuda definition[3] that were used in the current study[1]. In the only study[7] using the empiric criteria [2] that I am aware of that did not involve the CDC CFS team, 38% of those chosen as patients with Major Depressive Disorder but not CFS, were found to satisfy the new criteria[2] for CFS.

      References

      1] Boneva RS, Lin JM, Maloney EM, Jones JF, Reeves WC. Use of medications by people with chronic fatigue syndrome and healthy persons: a population-based study of fatiguing illness in Georgia. Health Qual Life Outcomes. 2009 Jul 20;7:67.

      [2] Reeves WC, Wagner D, Nisenbaum R, Jones JF, Gurbaxani B, Solomon L, Papanicolaou DA, Unger ER, Vernon SD, Heim C. Chronic fatigue syndrome--a clinically empirical approach to its definition and study. BMC Med. 2005 Dec 15;3:19.

      [3] Fukuda K, Straus SE, Hickie I, Sharpe MC, Dobbins JG, Komaroff A. The chronic fatigue syndrome; a comprehensive approach to its definition and study. Ann Int Med 1994, 121:953-959.

      [4] Reyes M, Nisenbaum R, Hoaglin DC, Unger ER, Emmons C, Randall B, Stewart JA, Abbey S, Jones JF, Gantz N, Minden S, Reeves WC: Prevalence and incidence of chronic fatigue syndrome in Wichita, Kansas. Arch Int Med 2003, 163:1530-1536.

      [5] Reeves WC, Jones JF, Maloney E, Heim C, Hoaglin DC, Boneva RS, Morrissey M, Devlin R. Prevalence of chronic fatigue syndrome in metropolitan, urban, and rural Georgia. Popul Health Metr. 2007 Jun 8;5:5.

      [6] Jason LA, Richman JA. How science can stigmatize: The case of chronic fatigue syndrome. Journal of Chronic Fatigue Syndrome 2008, 14, 85-103.

      [7] Jason LA, Najar N, Porter N, Reh C. Evaluating the Centers for Disease Control’s empirical chronic fatigue syndrome case definition. Journal of Disability Policy Studies 2009, 20, 93-100. doi:10.1177/1044207308325995


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    1. On 2013 Oct 31, John Cannell commented:

      The authors stated that markers of oxidative stress are present in autism spectrum disorder (ASD). I wonder if the authors are aware that the genes for the antioxidants superoxide dismutase and thioredoxin reductase are directly up-regulated by the secosteroid 1,25 di-hydroxy vitamin D3 (calcitriol). I believe both genes also harbor a vitamin D response element.

      Peehl DM, Shinghal R, Nonn L, Seto E, Krishnan AV, Brooks JD, Feldman D. Molecular activity of 1,25‐dihydroxyvitamin D3 in primary cultures of human prostatic epithelial cells revealed by cDNA microarray analysis. J. Steroid Biochem Mol. Biol 2004;92:131–141. PMID:15555907>

      Calcitriol also directly up-regulates glutathione reductase and increases glutathione levels.

      Jain SK, et alo. Vitamin D upregulates glutamate cysteine ligase and glutathione reductase, and GSH formation, and decreases ROS and MCP-1 and IL-8 secretion in high-glucose exposed U937 monocytes. Biochem Biophys Res Commun. 2013 Jul 19;437(1):7-11. doi: 10.1016/j.bbrc.2013.06.004. Jain SK, 2013

      Also, supplemental vitamin D significantly reduces oxidative stress in humans.

      Nikooyeh B, et al. Daily intake of vitamin D- or calcium-vitamin D-fortified Persian yogurt drink (doogh) attenuates diabetes-induced oxidative stress: evidence for antioxidative properties of vitamin D.J Hum Nutr Diet. 2013 Jul 5. doi: 10.1111/jhn.12142. Nikooyeh B, 2014

      Asemi Z, et al. Vitamin D supplementation affects serum high-sensitivity C-reactive protein, insulin resistance, and biomarkers of oxidative stress in pregnant women. J Nutr. 2013 Sep;143(9):1432-8. doi: 10.3945/jn.113.177550. Asemi Z, 2013

      Thus the vitamin D theory of ASD (vitamin D deficiency being the environmental risk factor for this highly heritable disorder) is consistent with the authors work. Three recent studies, using community controls, have found 25(OH)D levels are significantly lower in children with ASD. Two of the studies below (Mostafa et al and Gong et al) also found ASD severity, as rated on standard ASD rating scales, is inversely correlated with 25(OH)D levels. Mostafa et al found an R value of -.86 for the association of serum 25(OH)D with ASD severity.

      Gong ZL, Luo CM, Wang L, Shen L, Wei F, Tong RJ, Liu Y. Serum 25-hydroxyvitamin D levels in Chinese children with autism spectrum disorders. Neuroreport. 2013 Oct 1. Gong ZL, 2014

      Meguid NA, Hashish AF, Anwar M, Sidhom G. Reduced serum levels of 25-hydroxy and 1,25-dihydroxy vitamin D in Egyptian children with autism. J Altern Complement Med. 2010 Jun;16(6):641-5. Meguid NA, 2010

      Mostafa GA, Al-Ayadhi LY.Reduced serum concentrations of 25-hydroxy vitamin D in children with autism: relation to autoimmunity. J Neuroinflammation. 2012 Aug 17;9:201. Mostafa GA, 2012

      There is a plethora of basic science explaining why low gestational or early childhood 25(OH)D levels would adversely effect brain development.

      Eyles DW, Feron F, Cui X, Kesby JP, Harms LH, Ko P, McGrath JJ, Burne TH. Developmental vitamin D deficiency causes abnormal brain development. Psychoneuroendocrinology. 2009 Dec;34 Suppl 1:S247-57. doi: 10.1016/j.psyneuen.2009.04.015. Epub . Review. Eyles DW, 2009

      DeLuca GC, Kimball SM, Kolasinski J, Ramagopalan SV, Ebers GC. Review: the role of vitamin D in nervous system health and disease. Neuropathol Appl Neurobiol. 2013 Aug;39(5):458-84. doi: 10.1111/nan.12020. DeLuca GC, 2013

      Eyles DW, Burne TH, McGrath JJ. Vitamin D, effects on brain development, adult brain function and the links between low levels of vitamin D and neuropsychiatric disease. Front Neuroendocrinol. 2013 Jan;34(1):47-64. doi: 10.1016/j.yfrne.2012.07.001. Epub 2012 Jul 11. Review. Eyles DW, 2013

      Furthermore, the vitamin D theory of autism explains most of the epidemiological facts of ASD.

      Cannell JJ. On the aetiology of autism. Acta Paediatr. 2010 Aug;99(8):1128-30. Cannell JJ, 2010

      Cannell JJ. Autism and vitamin D. Med Hypotheses. 2008;70(4):750-9. Cannell JJ, 2008

      70% of American toddlers do not take


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    1. On 2014 Jan 08, Tom Kindlon commented:

      The references don't show that CFS "affects at least 4 million adults in the United States"

      This is not necessarily a major point to do with the methodology. However given the paper involves CFS medical education, and gives few facts about CFS, one would think that the statements that are made are at least reasonably accurate.

      However, this statement clearly isn't: "CFS affects at least 4 million adults in the United States [2-4]." The references given are the first three references below. The second study found a prevalence of 422 per 100,000 adults and the third study found a prevalence of 235 per 100,000 adults. These aren't even close to 4 million adults - the second one suggests a figure of at least 400,000 adults. This study involved one of the authors (William C Reeves). The other study[1], also involved Reeves, did find a prevalence of 2540 per 100,000 adults, which would equate to over 4 million adults. As can be seen, this is much higher than previous estimates of the prevalence of CFS in the US. The reason for the huge discrepancy is largely because it used a different method of defining CFS[4].

      There has been some criticism of this new definition[5]. Unlike previous times when the CDC produced definitions for CFS[6,7], the definition used in this study is generally only being used by the CDC-funded CFS research team [the cohorts from the Wichita 2-day study in 2003 (not to be confused with the Reyes study) and the Georgia prevalence study[3]]. So it's far from clear that most people would accept that CFS "affects at least 4 million adults in the United States". But certainly two of the three studies given to back up this reference did not find anything close to such a prevalence.

      References:

      [1] Reeves WC, et al. Prevalence of chronic fatigue syndrome in metropolitan, urban, and rural Georgia. Population Health Metrics 2007, 5:5.

      [2] Jason LA, Richman JA, Rademaker AW, Jordan KM, Plioplys AV, Taylor RR, McCready W, Huan CF, Plioplys S: A community-based study of chronic fatigue syndrome. Arch Int Med 1999, 159:2129-2137.

      [3] Reyes M, Nisenbaum R, Hoaglin DC, Emmons C, Stewart G, Randall B, Stewart JA, Abbey S, Jones JF, Gantz N, Minden S, Reeves WC: Prevalence and incidence of chronic fatigue syndrome in Wichita, Kansas. Arch Intern Med 2003, 163:1530-1536.

      [4] Reeves WC, Wagner D, Nisenbaum R, Jones JF, Gurbaxani B, Solomon L, Papanicolaou DA, Unger ER, Vernon SD, Heim C: Chronic Fatigue Syndrome – A clinically empirical approach to its definition and study. BMC Medicine 2005, 3:19 (15 December 2005)

      [5] Jason LA, Richman JA: How Science Can Stigmatize: The Case of Chronic Fatigue Syndrome. Journal of Chronic Fatigue Syndrome, Vol. 14(4), 2007

      [6] Fukuda, K., Straus, S.E., Hickie, I., Sharpe, M.C., Dobbins, J.G., & Komaroff, A. (1994). The chronic fatigue syndrome: A comprehensive approach to its definition and study. Annals of Internal Medicine, 121 (12):953-959. http://www.annals.org/cgi/content/full/121/12/953

      [7] Holmes GP, Kaplan JE, Gantz NM, Komaroff AL, Schonberger LB, Straus SE, et al. Chronic fatigue syndrome: a working case definition. Ann Intern Med. 1988; 108:387-9.


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    1. On 2014 Aug 29, Massimo Ciccozzi commented:

      I read with interest the paper by Santosh et al. HIV 2 infections were geographically restricted, affecting West African countries1, 2, whereas in Europe the prevalence of HIV-2 is high in those countries that have socioeconomic relationships with this African region 3-5 . However, increased migration from/to other countries and international travels might increase the risk of spreading of this virus worldwide. We recently published a phylogenetic analysis of HIV2 case series in Italy using sequences isolated from Indian patients try to connect this infection with other from different countries 6. This article is very interesting and give important information on HIV-2 using a complete genome analysis. In Indian country few papers have been written in Phylogenetic analysis and Santosh and coauthors have given a sort of thrust in this way. In my opinion I only suggest the use of Bayesian Methods to have more robust information about the origin of Indian epidemics, moreover I encourage all Indian researchers, that are able to make sequences, to do this. It is also important that the scientific community don't lower the watch and monitor this infection also because to study HIV 2 can be an opportunity to better understand the HIV disease pathogenesis, protein immunity and this have to be taken before it disappears.<br> References

      1. Dougan S, Patel B, Tosswill JH, and Sinka K: Diagnoses of HIV-1 and HIV-2 in England, Wales, and Northern Ireland associated with west Africa. Sex Transm Infect 2005;81:338– 341.
      2. Matheron S, Mendoza-Sassi G, Simon F, Olivares R, Coulaud JP, and Brun-Vezinet F: HIV-1 and HIV-2 AIDS in African patients living in Paris. AIDS 1997;11:934–936.3

      3. Valadas E, Franc¸a L, Sousa S, and Antunes F: 20 years of HIV-2 infection in Portugal: Trends and changes in epidemiology. Clin Infect Dis 2009;48:1166–1167.

      4. Barin F, Cazein F, Lot F, et al.: Prevalence of HIV-2 and HIV-1 group O infections among new HIV diagnoses in France: 2003– 2006. AIDS 2007;21:2351–2353.

      5. Soriano V, Gomes P, Heneine W, et al.: Human immunodeficiency virus type 2 (HIV-2) in Portugal: Clinical spectrum, circulating subtypes, virus isolation, and plasma viral load. J Med Virol 2000;61:111–116.

      6. D’Ettorre,G, Lo Presti A,Gori C, Cella E,Bertoli A,Vullo V,Perno CF, Ciotti M,. Foley Brian T, and Massimo Ciccozzi. An HIV Type 2 Case Series in Italy: A Phylogenetic Analysis.(2013) AIDS Res HUM Retroviruses


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    1. On 2014 Jan 08, Tom Kindlon commented:

      Various comments

      This paper refers to the use of a re-attribution programme. I thought I would highlight the results of a trial[1] published last year on the topic. It involved testing practice-based training of GPs in reattribution. The method to test the hypothesis was a "cluster randomised controlled trial in 16 practices, 74 GPs and 141 patients with medically unexplained symptoms of 6 hours of reattribution training v. treatment as usual." It found that "Practice-based training in reattribution changed doctor-patient communication without improving outcome of patients with medically unexplained symptoms". Hardly a ringing endorsement of the method.

      There has been a lot of hype about the effectiveness of Cognitive Behavioural Therapy (CBT) for Chronic Fatigue Syndrome (CFS). However, a meta-analysis[2] of its efficacy of CBT for CFS published in 2008 might temper some of the enthusiasm. The studies involved a total of 1371 patients. This involved calculating the size of an effect measure, the Cohen's d value. They calculated d using the following method: "Separate mean effect sizes were calculated for each category of outcome variable (e.g., fatigue self-rating) and for each type of outcome variable (mental, physical, and mixed mental and physical). Studies generally included multiple outcome measures. For all analyses except those that compared different categories or types of outcome variables, we used the mean effect size of all the relevant outcome variables of the study."d was calculated to be 0.48. For anyone unfamiliar with Cohen's d values, they are not bounded by 1; also, the higher the score, the bigger the "effect size" i.e. the more "effective" a treatment was found to be. Cohen's d values are considered to be a small effect size at 0.2, a moderate effect size at 0.5, and a large effect size at 0.8[2].

      There are now hundreds of studies that have found "physical" abnormalities of one sort or another in Chronic Fatigue Syndrome. Thus I question the placement of "Chronic Fatigue" (which many/most people would read as referring to Chronic Fatigue Syndrome as it is listed beside Fibromyalgia and Irritable Bowel Syndrome) in figure 1, "Hypothetical scatter plot of dysfunction versus pathology in primary care consultations" where "evidence of pathological change" is said to be "absent". The numerous abnormalities found raise questions about the placement on the scatter plot or else the limitations of the concept. Also how "reversible" the "abnormal functioning, either physiological or psychological" is, remains far from clear given the low recovery rates.

      References:

      [1] Morriss R, Dowrick C, Salmon P, Peters S, Dunn G, Rogers A, Lewis B, Charles-Jones H, Hogg J, Clifford R, Rigby C, Gask L. Cluster randomised controlled trial of training practices in reattribution for medically unexplained symptoms. Br J Psychiatry. 2007 Dec;191:536-42

      [2] Malouff, J. M., et al., Efficacy of cognitive behavioral therapy for chronic fatigue syndrome: A meta-analysis. Clinical Psychology Review (2007), doi:10.1016/j.cpr.2007.10.004

      [3] Cohen J: Statistical power analysis for the behavioural sciences. Edited by: 2. New Jersey: Lawrence Erlbaum; 1988.


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    1. On 2014 Jan 04, Tom Kindlon commented:

      References:

      [1] PD White, MC Sharpe, T Chalder, JC DeCesare, R Walwyn, for the PACE trial management group: Response to comments on "Protocol for the PACE trial" http://www.biomedcentral.com/1471-2377/7/6/comments#306608

      [2] Goudsmit EM, Stouten B, Howes S: Fatigue in Myalgic Encephalomyelitis. Bulletin of the IACFS/ME - Volume 16, Issue 3. http://tinyurl.com/3zcgw8 i.e. http://www.iacfsme.org/BULLETINFALL2008/Fall08GoudsmitFatigueinMyalgicEnceph/tabid/292/Default.aspx

      [3] Bazelmans E, Bleijenberg G, van der Meer JWM, Folgering H. Is physical deconditioning a perpetuating factor in chronic fatigue syndrome? A controlled study on maximal exercise performance and relations with fatigue, impairment and physical activity. Psychol Med 2001; 31: 107–14.

      [4] Black CD, O’Connor PJ, McCully KK. Increased daily physical activity and fatigue symptoms in chronic fatigue syndrome. Dyn Med 2005; 4: 3.

      [5] Sisto SA, Tapp WN, LaManca JJ et al. Physical activity before and after exercise in women with chronic fatigue syndrome. Q J Med 1998; 91:465–73.

      [6] Vercoulen JHMM, Bazelmans E, Swanink CMA et al. Physical activity in chronic fatigue syndrome assessment and its role in fatigue. J Psych Res 1997; 31: 661–73.

      [7] Van der Werf SP, Prins JB, Vercoulen JHM, van der Meer JWM, Bleijenberg G. Identifying physical activity patterns in chronic fatigue syndrome using actigraphic assessment. J Psychosom Res 2000; 49: 373–79.

      [8] Nijs J, Almond F, De Becker P, Truijen S, Paul L. Can exercise limits prevent post-exertional malaise in chronic fatigue syndrome? An uncontrolled clinical trial. Clin Rehabil. 2008 May;22(5):426-35.

      [9] Clapp LL, Richardson MT, Smith JF, Wang M, Clapp AJ, Pieroni RE. Acute effects of thirty minutes of light-intensity, intermittent exercise on patients with chronic fatigue syndrome. Phys Ther 1999; 79: 749-56.

      [10] Lapp, C (1997). Exercise limits in chronic fatigue syndrome. Am J Med, 103: 83-84.

      [11] DL Arnold et al. Excessive intracellular acidosis of skeletal muscles on exercise in the post viral exhaustion / fatigue syndrome: a 31P-NMR Study. Proceedings of third Annual Meeting of the Society for Magnetic Resonance in Medicine, New York, 1984, 12-13.

      [12] Jammes Y, Steinberg JG, Mambrini O, Bregeon F, Delliaux S: Chronic fatigue syndrome: assessment of increased oxidative stress and altered muscle excitability in response to incremental exercise. Journal: J Intern Med., 2005 Mar;257(3):299-310.

      [13] Black CD, McCully KK: Time course of exercise induced alterations in daily activity in chronic fatigue syndrome. Dyn Med. 2005 Oct 28;4:10.


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    1. On 2014 Jan 08, Tom Kindlon commented:

      New or "Unusual" definition for CFS used in this study

      (This was originally posted on the journal's website here: http://www.biomedcentral.com/1471-2377/6/41/comments. However, the formatting has been removed meaning few may read it there)

      People reading this study need to be aware that it uses a new or "unusual" definition of Chronic Fatigue Syndrome (CFS)[1] so the results may not apply to CFS cohorts as usually defined[2].This definition selects a group covering 2.54% of the adult population[3]. This is much higher than previous estimates of the prevalence of CFS. For example, members of the team in this study have previously estimated the prevalence as 0.235%[4] i.e. the prevalence rate using this definition is 10.8 times the rate found using the more usual CFS definition[2].

      There has been some criticism of this new definition[5]. Unlike previous times when the CDC produced definitions for CFS[2,6], the definition used in this study is generally only being used by the CDC-funded CFS research team.

      References:

      [1] Reeves WC, Wagner D, Nisenbaum R, Jones JF, Gurbaxani B, Solomon L, Papanicolaou DA, Unger ER, Vernon SD, Heim C: Chronic Fatigue Syndrome – A clinically empirical approach to its definition and study. BMC Medicine 2005, 3:19 (15 December 2005)

      [2] Fukuda, K., Straus, S.E., Hickie, I., Sharpe, M.C., Dobbins, J.G., & Komaroff, A. (1994). The chronic fatigue syndrome: A comprehensive approach to its definition and study. Annals of Internal Medicine, 121 (12):953-959. http://www.annals.org/cgi/content/full/121/12/953

      [3] Reeves WC, Jones JF, Maloney E, Heim C, Hoaglin DC, Boneva RS, Morrissey M, Devlin RPrevalence of chronic fatigue syndrome in metropolitan, urban, and rural Georgia. Population Health Metrics 2007, 5:5 (8 June 2007)

      [4] Reyes M, Nisenbaum R, Hoaglin DC, Unger ER, Emmons C, Randall B, Stewart JA, Abbey S, Jones JF, Gantz N, Minden S, Reeves WC: Prevalence and incidence of chronic fatigue syndrome in Wichita, Kansas. Arch Int Med 2003, 163:1530-1536.

      [5] Jason Leonard: Issues with CDC Empirical Case Definition and Prevalence of CFS. IACFS website http://tinyurl.com/2qdgu4 i.e. http://www.iacfsme.org/IssueswithCDCEmpiricalCaseDefinitionandPrev/tabid/105/Default.aspx

      [6] Holmes GP, Kaplan JE, Gantz NM, Komaroff AL, Schonberger LB, Straus SE, et al. Chronic fatigue syndrome: a working case definition. Ann Intern Med. 1988; 108:387-9.


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    1. On 2014 Jan 09, Tom Kindlon commented:

      (contd.)

      There are numerous pre-existing instruments out there that measure other symptoms associated with CFS. Off the top of my head, two that come to mind are the Chronic Fatigue Syndrome Symptom List and the CFS CDC Symptom Inventory. It encompasses the 19 most frequently reported symptoms in a sample of 1578 chronic fatigue syndrome patients[8]. In order to assess the severity of the symptoms included in the Chronic Fatigue Syndrome Symptom List, visual analogue scales (100 mm) are used. The Symptom Inventory "collects information about the presence, frequency, and intensity of 19 fatigue and illness-related symptoms" including the 8 CDC criteria symptoms. Perceived frequency of each symptom is rated on a four-point scale (1=a little of the time, 2=some of the time, 3=most of time, 4=all of the time), and severity or intensity of symptoms was measured on a three-point scale (1=mild, 2=moderate, 3=severe). To summarize the degree of distress associated with each symptom, individual symptom scores were calculated by multiplying the frequency score by the intensity score. The scoring would not have to be done like this - for example in the same paper I quoted from for the method of scoring above, the CDC team[8] used the following method: they "transformed the intensity scores into equidistant scores before multiplication (i.e., 0 = symptom not reported 1 = mild, 2.5 = moderate, 4 = severe) resulting in range 0–16 for each symptom." A total score for each person can be calculated by summing the 19 individual symptom scores (possible range from 0 to 304). A Case Definition score can be calculated as the sum of the 8 individual CFS case-definition symptom scores and an Other Symptoms score by considering only the 11 non-CFS symptoms.Calculating levels of various symptoms like this would have given a better overall idea of the health of the patients and how badly affected they were by "CFS/ME".

      They could also have been used before and after the exercise testing.

      In most management strategies these days, whether they're based on a graded exercise/activity model or a pacing model, patients are discouraged from "boom and bust" i.e. doing too much or pushing themselves and then crashing with lots of symptoms. Faced with the exercise testing, a patient who is good at avoiding "booming and busting" may not push themselves as hard as another patient. That does not mean they are not as well or do not manage their illness as well as another patient. One way of measuring whether this occurred with the exercise testing was if measures were used before and after the exercise testing. Given the post-exertional nature of many of the symptoms of "CFS/ME", it can be good not to restrict testing just to the day of exercise testing.

      There are some examples in the literature of patients being followed up after exercise testing. For example, Nijs[10] performed a gentle walking exercise on patients where they walked on average 558m(+/-340) (range: 120-1620) at a speed of 0.9m/s (+/-0.2) (range: 0.6-1.1). This resulted in a statistically significant (p<0.05) worsening of scores in the following areas when comparing pre-exercise, post-exercise and 24 hour post-exercise scores using ANOVA: VAS fatigue, VAS musculoskeletal pain, VAS sore throat, SF-36 bodily pain and SF-36 general health perception. 14 out of 24 subjects experienced a clinically meaningful change (worsening) in bodily pain (i.e. a minimum change of the SF-36 bodily pain subscale score of at least 10).In another study, Lapp [11] reported on the effects of 31 patients to his practice who were asked to monitor their symptoms three weeks before to 12 days after a maximal exercise test. 74% of the patients experienced worsening fatigue and 26% stayed the same. None improved. The average relapse lasted 8.82 days although 22% were still in relapse when the study ended at 12 days. There were similar changes with exercise in lymph pain, depression, abdominal pain, sleep quality, joint and muscle pain and sore throat.

      Actometers could also have been used in the period before and after testing to see whether there was "booming and busting" and so to see whether the exercise testing alone is useful or not.

      I am unsure whether much of what I've written can be used at this stage for this study but it may be useful for people interpreting the results as well as for others designing further trials.* When quoting from the paper's text, I have changed the reference numbers of papers to ones I've used.

      Publications

      1 Whiting P, Bagnall A-M, Sowden A, Cornell J, Mulrow C, Ramirez G: Interventions for the treatment and management of chronic fatigue syndrome. A systematic review. JAMA 2001, 286:1360-1368.

      2 Friedberg, F. Does graded activity increase activity? A case study of chronic fatigue syndrome. Journal of Behavior Therapy and Experimental Psychiatry, 2002, 33, 3-4, 203-215

      3 Prins JB, Bleijenberg G, Bazelmans E, et al. Cognitive behaviour therapy for chronic fatigue syndrome: a multicentre randomised controlled trial. Lancet 2001; 357: 841-47.

      4 Van Essen, M and de Winter, LJM. Cognitieve gedragstherapie by het vermoeidheidssyndroom cognitive behaviour therapy for chronic fatigue syndrome). Report from the College voor Zorgverzekeringen. Amstelveen: Holland. June 27th, 2002. Bijlage B. Table 2.

      5 O'Dowd, H., Gladwell, P., Rogers, CA., Hollinghurst, S and Gregory, A. Cognitive behavioural therapy in chronic fatigue syndrome: a randomised controlled trial of an outpatient group programme. Health Technology Assessment, 2006, 10, 37, 1-140.

      6 Roberts AD, Papadopoulos AS, Wessely S, Chalder T, Cleare AJ. Salivary cortisol output before and after cognitive behavioural therapy for chronic fatigue syndrome. J Affect Disord. 2008 Oct 18.

      7 Priebe S, Fakhoury WK, Henningsen P. Functional incapacity and physical and psychological symptoms: how they interconnect in chronic fatigue syndrome. Psychopathology. 2008;41(6):339-45.

      8 De Becker P, McGregor N, De Meirleir K. A definition-based analysis of symptoms in a large cohort of patients with chronic fatigue syndrome. J Intern Med 2001; 250: 234–40.

      9 Wagner D, Nisenbaum R, Heim C, Jones JF, Unger ER, Reeves WC. Psychometric properties of the CDC Symptom Inventory for assessment of chronic fatigue syndrome. Popul Health Metr. 2005 Jul 22;3:8.

      10 Nijs J, Almond F, De Becker P, Truijen S, Paul L. Can exercise limits prevent post-exertional malaise in chronic fatigue syndrome? An uncontrolled clinical trial. Clin Rehabil. 2008 May;22(5):426-35.

      11 Lapp, C (1997). Exercise limits in chronic fatigue syndrome. Am J Med, 103: 83-84.


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    1. On 2014 Feb 02, Tom Kindlon commented:

      More symptoms could be added to a CFS Symptom Inventory

      (This was originally posted here: http://www.pophealthmetrics.com/content/3/1/8/comments but the formatting has been removed and some people may not read the paper there either).

      Many would feel that the 8 symptoms used in the CDC '94 definition [1] were chosen in a somewhat arbitrary fashion; so it is to be welcomed that the CDC itself has started to look beyond these symptoms with the CDC CFS Symptom Inventory. The idea of a Short Form of the CDC Symptom Inventory is also interesting.

      However, it is not clear to me where the extra symptoms that are on the CDC CFS Symptom Inventory came from. For example, I didn't see some of the symptoms listed in Reeves et al [2].

      In 2001, De Becker et al [3] published data on the symptoms found in over 2500 patients. They tried to improve on the 1988 [4] and 1994 CDC criteria. They suggested a list of symptoms that could be used to strengthen the ability to select ME/CFS patients. Many of the symptoms they mentioned are not in the CDC CFS Symptom Inventory.

      So to claim that the "CDC Symptom Inventory assesses the full range of CFS associated symptoms" seems questionable. It would be interesting if in future these symptoms (that De Becker et al were suggesting) were added before statistical analyses are performed. The fatigue criteria and functional impairment criteria have become much less restrictive [5]. For example, to satisfy the fatigue criteria, the fatigue is required to be greater than or equal to the medians of the MFI general fatigue (≥ 13) or reduced activity (≥ 10) scales. So it now seems particularly important that the symptom criteria have good sensitivity and specificity or one is going to end up with a definition that leads to very heterogeneous samples.

      References:

      [1] Fukuda K, Straus SE, Hickie I, Sharpe MC, Dobbins JG, Komaroff A: The chronic fatigue syndrome; a comprehensive approach to its definition and study.Ann Int Med 1994, 121:953-959.

      [2] Reeves WC, Lloyd A, Vernon SD, Klimas N, Jason LA, Bleijenberg G, Evengard B, White PD, Nisenbaum R, Unger ER, International Chronic Fatigue Syndrome Study Group: Identification of ambiguities in the 1994 chronic fatigue syndrome research case definition and recommendations for resolution.BMC Health Services Research 2003, 3:25.http://dx.doi.org/10.1186/1472-6963-3-25

      [3] A definition-based analysis of symptoms in a large cohort of patients withchronic fatigue syndrome, P. De Becker, N. McGregor, and K. De Meirleir.Journal of Internal Medicine 2001;250:234-240

      [4] Holmes GP, Kaplan JE, Gantz NM, Komaroff AL, Schonberger LB, Straus SE, et al.: Chronic fatigue syndrome: a working case definition. Ann Intern Med 1988, 108:387-389.

      [5] Reeves WC, Wagner D, Nisenbaum R, Jones JF, Gurbaxani B, Solomon L, Papanicolaou DA,Unger ER, Vernon SD, Heim C: Chronic fatigue syndrome — a clinically empirical approachto its definition and study. BMC Medicine 2005, 3:16.


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    1. On 2014 Jul 04, Tom Kindlon commented:

      References:

      1. Collings AD, Newton D. Re: What causes chronic fatigue syndrome? BMJ 2014 (18 June).

      2. Hickie I, Davenport T, Wakefield D, Vollmer-Conna U, Cameron B, Vernon SD, Reeves WC, Lloyd A; Dubbo Infection Outcomes Study Group. Post-infective and chronic fatigue syndromes precipitated by viral and non-viral pathogens: prospective cohort study. BMJ. 2006 Sep 16;333(7568):575.

      3. Bavinton J, Darbishire L, White PD -on behalf of the PACE trial management group. Graded Exercise Therapy for CFS/ME (Therapist manual): http://www.pacetrial.org/docs/get-therapist-manual.pdf (Accessed: June 25, 2014)

      4. Burgess M, Chalder T. PACE manual for therapists. Cognitive behaviour therapy for CFS/ME.http://www.pacetrial.org/docs/cbt-therapist-manual.pdf (Accessed: June 25, 2014)

      5. Twisk FNM, Maes M. A review on Cognitive Behavorial Therapy (CBT) and Graded Exercise Therapy (GET) in Myalgic Encephalomyelitis (ME)/Chronic Fatigue Syndrome (CFS): CBT/GET is not only ineffective and not evidence-based, but also potentially harmful for many patients with ME/CFS. Neuro Endocrinol Lett. 2009;30:284-299.

      6. Kindlon T. Reporting of Harms Associated with Graded Exercise Therapy and Cognitive Behavioural Therapy in Myalgic Encephalomyelitis/Chronic Fatigue Syndrome. Bulletin of the IACFS/ME. 2011;19(2):59-111http://www.iacfsme.org/BULLETINFALL2011/Fall2011KindlonHarmsPaperABSTRACT/tabid/501/Default.aspx

      7. Rapport d’évaluation (2002-2004) portant sur l’exécution des conventions de rééducation entre le Comité de l’assurance soins de santé (INAMI) et les Centres de référence pour le Syndrome de fatigue chronique (SFC). 2006. http://www.inami.fgov.be/care/fr/re...mation/studies/study-sfc-cvs/pdf/rapport.pdf . (French language edition) (Accessed: June 25, 2014)

      8. Evaluatierapport (2002-2004) met betrekking tot de uitvoering van de revalidatieovereenkomsten tussen het Comité van de verzekering voor geneeskundige verzorging (ingesteld bij het Rijksinstituut voor Ziekte- en invaliditeitsverzekering) en de Referentiecentra voor het Chronisch vermoeidheidssyndroom (CVS). 2006. Available online: http://www.inami.fgov.be/care/nl/re...mation/studies/study-sfc-cvs/pdf/rapport.pdf Accessed September 16, 2011 (Dutch language version) (Accessed: June 25, 2014)

      9. Stordeur S, Thiry N, Eyssen M. Chronisch Vermoeidheidssyndroom: diagnose, behandeling en zorgorganisatie. Health Services Research (HSR). Brussel: Federaal Kenniscentrum voor de Gezondheidszorg (KCE); 2008. KCE reports 88A (D/2008/10.273/58)https://kce.fgov.be/sites/default/files/page_documents/d20081027358.pdf (Accessed: June 25, 2014)

      10. Crawley E, Collin SM, White PD, Rimes K, Sterne JA, May MT; CFS/ME National Outcomes Database. Treatment outcome in adults with chronic fatigue syndrome: a prospective study in England based on the CFS/ME National Outcomes Database. QJM. 2013 Jun;106(6):555-65

      11. "How we can help ME sufferers in north Essex" http://www.gazette-news.co.uk/search/4453571.How_we_can_help_ME_sufferers_in_north_Essex/

      12. Walwyn R, Potts L, McCrone P, Johnson AL, DeCesare JC, Baber H, Goldsmith K, Sharpe M, Chalder T, White PD. A randomised trial of adaptive pacing therapy, cognitive behaviour therapy, graded exercise, and specialist medical care for chronic fatigue syndrome (PACE): statistical analysis plan. Trials. 2013 Nov 13;14:386.

      13. White PD, Goldsmith KA, Johnson AL, et al; PACE trial management group. Comparison of adaptive pacing therapy, cognitive behaviour therapy, graded exercise therapy, and specialist medical care for chronic fatigue syndrome (PACE): a randomised trial. Lancet. 2011 Mar 5;377(9768):823-36.

      14. McCrone P, Sharpe M, Chalder T, Knapp M, Johnson AL, Goldsmith KA, White PD. Adaptive pacing, cognitive behaviour therapy, graded exercise, and specialist medical care for chronic fatigue syndrome: a cost-effectiveness analysis. PLoS One. 2012;7(8):e40808.

      15. Wiborg JF, Knoop H, Stulemeijer M, Prins JB, Bleijenberg G. How does cognitive behaviour therapy reduce fatigue in patients with chronic fatigue syndrome? The role of physical activity. Psychol Med. 2010 Aug;40(8):1281-7.

      16. White PD, Sharpe MC, Chalder T, DeCesare JC, Walwyn R; PACE trial group. Protocol for the PACE trial: a randomised controlled trial of adaptive pacing, cognitive behaviour therapy, and graded exercise, as supplements to standardised specialist medical care versus standardised specialist medical care alone for patients with the chronic fatigue syndrome/myalgic encephalomyelitis or encephalopathy. BMC Neurol. 2007 Mar 8;7:6.

      17. White PD, Goldsmith K, Johnson AL, Chalder T, Sharpe M. Recovery from chronic fatigue syndrome after treatments given in the PACE trial. Psychol Med. 2013 Oct;43(10):2227-35.

      18. Adamowicz JL, Caikauskaite I, Friedberg F. Defining recovery in chronic fatigue syndrome: a critical review. Qual Life Res. 2014 May 3.

      19. Shepherd C. Letter to the editor: comments on 'Recovery from chronic fatigue syndrome after treatments given in the PACE trial'. Psychol Med. 2013 Aug;43(8):1790-1.

      20. Maryhew C. Letter to the editor: comments on 'Recovery from chronic fatigue syndrome after treatments given in the PACE trial'. Psychol Med. 2013 Aug;43(8):1789-90.

      21. Cox D. Letter to the editor: 'Recovery from chronic fatigue syndrome after treatments given in the PACE trial': data on the recovery groups as a whole would be useful. Psychol Med. 2013 Aug;43(8):1789.

      22. Courtney R. Letter to the editor: 'Recovery from chronic fatigue syndrome after treatments given in the PACE trial': an appropriate threshold for a recovery? Psychol Med. 2013 Aug;43(8):1788-9.

      23. Carter S. Letter to the editor: 'Recovery from chronic fatigue syndrome after treatments given in the PACE trial': recovery or remission? Psychol Med. 2013 Aug;43(8):1787-8.

      24. Agardy S. Letter to the editor: comments on 'Recovery from chronic fatigue syndrome after treatments given in the PACE trial'. Psychol Med. 2013 Aug;43(8):1787.

      25. Kindlon T. Author's response: Criticisms of the PACE Trial were justified. BMJ. October 16, 2013http://www.bmj.com/content/347/bmj.f5963/rr/667107

      26. Kindlon T. PACE trial: Simply giving a reason why an outcome measure was changed is not necessarily sufficient. BMJ November 2013 http://www.bmj.com/content/347/bmj.f5963/rr/670755.

      27. Clarke D. It is wrong to prevent patients from making informed decisions about their medical care. BMJ November 26, 2013. http://www.bmj.com/content/347/bmj.f5963/rr/674255

      28. McPhee G. A fundamental misuse of statistics. BMJ November 21, 2013http://www.bmj.com/content/347/bmj.f5963/rr/673572

      29. Baldwin A. PACE trial steering group fail to spot error in reasons for protocol changes. BMJ November 21, 2013 http://www.bmj.com/content/347/bmj.f5963/rr/673502

      30. Matthees A. Did PACE make major unapproved protocol changes after seeing outcomes data? BMJ November 29, 2013 http://www.bmj.com/content/347/bmj.f5963/rr/674770

      31. Carter S. Published protocols exist to protect patients. BMJ December 2, 2013http://www.bmj.com/content/347/bmj.f5963/rr/675525

      32. Clifford Couch I. SF-36 Scale for Normal Physical Function, Age Matters. BMJ December 2, 2013http://www.bmj.com/content/347/bmj.f5963/rr/675527

      33. Kirby SBM. Re: PACE trial authors’ reply to letter by Kindlon. BMJ February 1, 2014http://www.bmj.com/content/347/bmj.f5963/rr/684828

      34. "Selected data on PACE Trial participants" request:https://www.whatdotheyknow.com/request/selected_data_on_pace_trial_part


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    1. On 2014 Feb 05, Tom Kindlon commented:

      A CFS study which raises questions about the use of the Role Emotional (RE) subscale of the SF-36 to define CFS

      (This was originally posted here: http://www.biomedcentral.com/1472-6963/3/25/comments but the formatting has been lost and some people may read the paper on PubMed Central)

      As I mentioned in the previous comment, this paper recommends, amongst other questionnaires, the use of the SF-36 questionnaire but does not specify which subscales should be used.

      One group of researchers[1] have decided to use the physical function, role physical, social function and role emotional subscales of the SF-36 to define disability, with a low score on just one of these subscales being sufficient to satisfy the criteria (i.e. there didn't need to be more than one low scores).

      Since then, this definition has gone on to be used in numerous papers (such as [2-5]) as the CDC are using it as the definition they're using for their CFS studies in the US, and they probably have the largest CFS research program in the world. It was used to give the prevalence rate of 2.54% for CFS in the adult population[6]. Most recently, it was used to investigate the prevalence of the reporting of childhoold trauma in this cohort[7].

      A study by Fulcher and White (2000)[8] raises questions about the use of the Role Emotional (RE) subscale of the SF-36 to select patients with CFS. The study involved 66 patients with CFS without a current psychiatric disorder, 30 healthy but sedentary controls, and 15 patients with a current major depressive disorder.

      It found, amongst other things, that "the two patient groups were significantly more incapacitated than the sedentary controls on all SF-36 measures (p<0.001), except that the patients with CFS were not significantly different in emotional or mental function." Also, "the depressed subjects were significantly more incapacitated in emotional and mental functioning than the patients with CFS p<0.001)."

      These results suggest that low scores on the emotional and mental functioning subscales of the SF-36 do not seem to be an intrinsic part of CFS (if they're found, they could be related to comorbid psychiatric issues). They also points out the risks of using the RE subscale alone [especially given CFS shares some characteristics with depression and so some people with depression (but not CFS) could potentially score the required 25 points on the Symptom Inventory] i.e. one could inadvertently include some people who have depression but not CFS, as CFS patients.

      References

      [1] Reeves WC, Wagner D, Nisenbaum R, Jones JF, Gurbaxani B, Solomon L, Papanicolaou DA, Unger ER, Vernon SD, Heim C. Chronic Fatigue Syndrome – A clinically empirical approach to its definition and study. BMC Medicine 2005, 3:19<br><br>

      [2] Raison CL, Lin JM, Reeves WC. Association of peripheral inflammatory markers with chronic fatigue in a population-based sample. Brain Behav Immun. 2008 Dec 11.

      [3] Welberg LA, Capuron L, Miller AH, Pagnoni G, Reeves WC. Neuropsychological performance in persons with chronic fatigue syndrome: results from a population-based study.Majer M, Psychosom Med. 2008 Sep;70(7):829-36.

      [4] Nater UM, Youngblood LS, Jones JF, Unger ER, Miller AH, Reeves WC, Heim C. Alterations in diurnal salivary cortisol rhythm in a population-based sample of cases with chronic fatigue syndrome. Psychosom Med. 2008 Apr;70(3):298-305.

      [5] Nater UM, Maloney E, Boneva RS, Gurbaxani BM, Lin JM, Jones JF, Reeves WC, Heim C. Attenuated morning salivary cortisol concentrations in a population-based study of persons with chronic fatigue syndrome and well controls. J Clin Endocrinol Metab. 2008 Mar;93(3):703-9.

      [6] Reeves WC, Jones JF, Maloney E, Heim C, Hoaglin DC, Boneva RS, Morrissey M, Devlin R. Prevalence of chronic fatigue syndrome in metropolitan, urban, and rural Georgia. Popul Health Metr. 2007 Jun 8;5:5.

      [7] Heim C, Nater UM, Maloney E, Boneva R, Jones JF, Reeves WC. Childhood trauma and risk for chronic fatigue syndrome: association with neuroendocrine dysfunction. Arch Gen Psychiatry. 2009 Jan;66(1):72-80.

      [8] Fulcher KY, White PD. Strength and physiological response to exercise in patients with chronic fatigue syndrome. J Neurol Neurosurg Psychiatry. 2000 Sep;69(3):302-7.


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    2. On 2014 Feb 03, Tom Kindlon commented:

      Which subscales of the SF-36 should be used? Results from a study in Fibromyalgia patients

      (This was originally posted here: http://www.biomedcentral.com/1472-6963/3/25/comments but the formatting has been lost and some people may read the paper on PubMed Central)

      This paper recommends, amongst other questionnaires, the use of the SF-36 questionnaire. But which subscales should be used? One group of researchers[1] decided to use the physical function, role physical, social function and role emotional subscales of the SF-36 to define disability, with a low score on just one of these subscales being sufficient to satisfy the criteria (i.e. there didn't need to be more than one low scores). Since then, this definition[1] has gone on to be used in numerous papers (for example, 2-5).

      But is this a good way of using the SF-36 given the Fukuda definition for CFS[6] requires that there be a "substantial reduction in previous levels of occupational, educational, social, or personal activities".

      Fibromyalgia patients share many similarities with CFS patients and many researchers use CFS and FMS patients together in their studies (for example [7-10]).

      One study[11] recently assessed Fibromyalgia Syndrome (FS) patients using the SF-36 questionnaire. It found that patients could be broken down into two groups using the SF-36 subscales looking at mental well-being (social functioning, role limitation due to emotional health problems, and mental health). "One group demonstrated psychological dysfunction, whereas the other showed normal psychological scores. Physical well-being scores (physical functioning, role limitation due to physical health problems, bodily pain, general health, and vitality) did not differ between FS patients but were altogether below the normal range."

      If this was found to be the same in other populations, it would suggest that perhaps including patients who solely have low scores on subscales assessing mental well-being such as the role emotional and social functioning subscales of SF-36, which is all the CFS definition prepared by Reeves[1] requires, would select a group of people with psychological dysfunction but not necessarily greater physical disability.

      References:

      [1] Reeves WC, Wagner D, Nisenbaum R, Jones JF, Gurbaxani B, Solomon L, Papanicolaou DA, Unger ER, Vernon SD, Heim C. Chronic Fatigue Syndrome – A clinically empirical approach to its definition and study. BMC Medicine 2005, 3:19

      [2] Reeves WC, Heim C, Maloney EM, Youngblood LS, Unger ER, Decker MJ, Jones JF, Rye DB. Sleep characteristics of persons with chronic fatigue syndrome and non-fatigued controls: results from a population-based study. BMC Neurology 2006, 6:41

      [3] Majer M, Jones JF, Unger ER, Youngblood LS, Decker MJ, Gurbaxani B, Heim C, Reeves WC. Perception versus polysomnographic assessment of sleep in CFS and non-fatigued control subjects: results from a population-based study. BMC Neurology 2007, 7:40

      [4] Jones JF, Maloney EM, Boneva RS, Jones AB, Reeves WC. Complementary and alternative medical therapy utilization by people with chronic fatiguing illnesses in the United States. BMC Complementary and Alternative Medicine 2007, 7:12

      [5] Reeves WC, Jones JF, Maloney E, Heim C, Hoaglin DC, Boneva RS, Morrissey M, Devlin R.Prevalence of chronic fatigue syndrome in metropolitan, urban, and rural Georgia. Popul Health Metr. 2007 Jun 8;5:5.

      [6] Fukuda K, Straus SE, Hickie I, Sharpe MC, Dobbins JG, Komaroff A: The chronic fatigue syndrome; a comprehensive approach to its definition and study. Ann Int Med 1994, 121:953-959.

      [7] Teitelbaum JE, Johnson C, St Cyr J. The use of D-ribose in chronic fatigue syndrome and fibromyalgia: a pilot study. J Altern Complement Med. 2006 Nov;12(9):857-62.

      [8] Glass JM. Cognitive dysfunction in fibromyalgia and chronic fatigue syndrome: new trends and future directions. Curr Rheumatol Rep. 2006 Dec;8(6):425-9.

      [9] Zachrisson O, Regland B, Jahreskog M, Jonsson M, Kron M, Gottfries CG. Treatment with staphylococcus toxoid in fibromyalgia/chronic fatigue syndrome--a randomised controlled trial. Eur J Pain. 2002;6(6):455-66.

      [10] Zachrisson O, Regland B, Jahreskog M, Kron M, Gottfries CG. A rating scale for fibromyalgia and chronic fatigue syndrome (the FibroFatigue scale). J Psychosom Res. 2002 Jun;52(6):501-9.

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      This comment, imported by Hypothesis from PubMed Commons, is licensed under CC BY.

  2. May 2018
    1. What questions am I left with? What would I like to know more about?

      There are a two questions that immediately spring to mind upon engaging with this article: First, I wonder, do engineers understand quite how deep the problem goes? Second, while I believe the solution to the problem is really quite simple, I am curious whether most Engineers would be willing to embrace it. I will now address each of these questions in turn.

      Do Engineers understand quite how deep the problem goes?

      There is now an overwhelming body of evidence which indicates that evolution engineered the brain to put analytic and empathic thinking into tension. Scientific and mechanical reasoning, along with calculation (math) and logic, are prototypical types of analytic thinking. When we engage in these types of thinking, we shut down the brain areas we need to understand the perspective of others (Anticevic et al., 2012; Jack et al., 2012) – an absolutely crucial component of ethical awareness and deliberation (Friedman & Jack, 2017; Jack, Dawson, & Norr, 2013).

      My main critique of this discussion article relates to the fact that the authors only touch on the surface of the large body of evidence which not only supports this view of the brain, but which also indicates that it impacts human behavior. First, the authors appear to have overlooked other work from my laboratory which is supportive of this view (e.g. a follow up study of the neural basis of dehumanizing (Jack et al., 2013)My laboratory has focused on this issue and its behavioral consequences for many years now. However, it would be very concerning if such claims about the function of the brain were wholly dependent on work from a single laboratory! Happily, this is not the case. The fact that attention demanding analytic tasks, such as mechanical reasoning, tend to deactivate brain regions essential for social, emotional and moral cognition might be fairly characterized as one of the most clearly established findings in cognitive neuroscience (Anticevic et al., 2012; Buckner, Andrews-Hanna, & Schacter, 2008; Shulman et al., 1997)]. This work is broken down in greater detail in many of my more recent articles. In addition, there are behavioral studies by researchers with no interest in the brain which clearly show that analytic thinking negatively impacts ethical thinking and behavior (Small, Loewenstein, & Slovic, 2007; Wang, Zhong, & Murnighan, 2014; Zhong, 2011)

      These studies provide powerful convergent evidence, since they were in no way motivated or informed by neuroscience – they are observations about patterns of human behavior made by behavioral economists and psychologists without reference to the underlying neural mechanism which explains why they occur. Since the authors do not appear to be aware of much of this literature, large parts of the article are quite tentative in tone. Nonetheless, in the section titled “Reflections on the implications for learning engineering”, the authors provide an excellent and incisive summary of exactly why our understanding of the brain should be a serious cause for concern for those who are concerned about educating ethical engineers.

      In this regard, it is worth mentioning how an emphasis on analytic thinking might increase one’s ability to ‘rationalize away’ the ethical consequences of one’s decision(s). The sorts of problem solving skills that engineers learn might then be applied to social and ethical dilemmas, which in turn removes the social and ethical significance.

      The authors do an excellent job of discussing why an engineering education is likely to reinforce students into predominately relying upon analytic thinking in preference to empathic thinking. They do this using the model shown in Figure 4, which illustrates how doing/behavior (i.e. practice at particular types of task) enables changes in structure (neural network function), and also vice-versa: changes in structure enable changes in doing/behavior. This creates a cycle of reinforcement. As the authors nicely put it: “the ‘doing’ that activates the Physical Stance [i.e. an engineering education] gives rise to the Physical stance as a preferred, low activation cognitive pathway….condition[ing] people to unconsciously apply mechanical reasoning to situations where social or moral reasoning would be a better fit for the purpose.” I believe the authors are exactly on point with this model. In my laboratory we have extended our neuroscience work by also measuring individual tendencies to think analytically and empathically with simple behavioral tests and self-report questionnaires. One way in which we measure analytic thinking is using the Intuitive Physics Test developed by Simon Baron-Cohen and colleagues, which can be easily found online for those who are interested and which is a good measure of everyday aptitude for mechanical thinking (Baron-Cohen, Wheelwright, Spong, Scahill, & Lawson, 2001)

      In these purely behavioral tests, we consistently find evidence for a small trade-off between these two ways of thinking (Friedman & Jack, 2017). That is, individuals who score higher on analytic thinking tend to score very slightly lower on empathic thinking. Some of these findings are reported incidentally in (Jack, Friedman, Boyatzis, & Taylor, 2016). We are currently preparing a manuscript which collates a much larger set of studies and focuses solely on this issue. The small trade-off between empathic and analytic thinking becomes accentuated for cases where it is less clear which way of thinking is best suited to the matter of hand. For instance, we have now performed a number of studies of religious belief. Supernatural claims, such as that God or a universal spirit exists, seem clearly incorrect from a purely mechanical way of thinking. However, we posited that they would seem correct from an empathic way of thinking. Correspondingly, we found that analytic thinking ability is associated with decreased religious belief, whereas empathic thinking is associated with increased religious belief (Jack et al., 2016). Other unpublished work in progress shows an even more robust association between these two ways of thinking and how much individuals care about dehumanized outgroups. Unsurprisingly, people higher in empathy care more about dehumanized outgroups than people lower in empathy. More remarkably, people who score higher on the Intuitive Physics Test care less about dehumanized outgroups than people who score lower on that measure of analytic thinking. I am comfortable informally reporting this finding since we have now replicated it. We aim to extend it with a further study before publication. The important point which emerges from this work is that individuals who have strongly reinforced one way of thinking without seeking to balance that out with another way of thinking show a clear tendency to default to (or prefer) one cognitive strategy over another when faced with any situation which is even remotely ambiguous. In other words, those whose training has focused predominantly on analytic thinking, such as engineers, will tend to overlook the more human perspective. This observation was made anecdotally long before cognitive neuroscience emerged as a discipline, or psychology developed the instruments to assess it quantitatively. The famous Oxford philosopher, P.F. Strawson, wrote in his groundbreaking article on the philosophy of free will “But what is above all interesting is the tension there is, in us, …between our humanity and our intelligence” (Strawson 1962, p.10).

      In the next part of their section titled “Reflections on the implications for learning engineering,” the authors make another insightful and important point. They observe that as we overdevelop one way of thinking, we may distort our whole picture of the world to fit with that way of thinking. They make this point by reference to Lakoff’s notion of frames, which is certainly a useful tool for thinking about how we think. However, I would suggest the basic point is perhaps more simply and more powerfully made by the well-known aphorism they aptly mention: “If one only has a hammer, everything looks like a nail.”

      The distortion of the world to fit with a purely scientific or analytic way of thinking is something I find I am obliged to wrestle with frequently. One label for this phenomenon is ‘scientism’. Since I teach at university dominated by the hard sciences and Engineering, such scientistic attitudes are quite common. They are also quite common in neuroscience and in some branches of psychology. An amusing example of this is a recent book by the very analytically smart psychologist Paul Bloom, who has written many warmly received popular science books. However, he recently published a book titled “Against Empathy” to resounding condemnation from virtually all intellectually informed readers, in particular other psychologists, philosophers, sociologists and anthropologists. In essence, Paul Bloom’s lack of connection to empathy motivated him to form a completely distorted picture of it, and motivated him to write a book which attacks empathy in ridiculous and contrived ways, such that it is barely coherent from an analytic (either scientific or logical) point of view. Such poor judgment is remarkable for such a smart and accomplished individual, both as a scientist and as a popular science author.

      Since the discussion article highlights the tension between mechanistic reasoning and ethics, it is important to note that ethics itself can be split into perspectives that are predominantly analytic (utilitarianism), versus more empathic perspectives that focus more on humanity. This is in itself a topic of some study in cognitive neuroscience. My own published view is that competent ethical thinking requires us to balance analytic and empathic perspectives on a situation (Friedman, Jack, Rochford, & Boyatzis, 2015; Friedman & Jack, 2017; Rochford, Jack, Boyatzis, & French, 2016). In general, the error that is most often made in current society is to tend towards emphasizing an analytic approach and excluding an empathic approach. That a purely analytic way of thinking ethically is problematic is illustrated by the fact it motivates actions without regard for human rights, including acts which would be categorized under current law as unjustified killing. Many of the recent ethical scandals that have plagued major corporations appear to have stemmed from an overemphasis on an analytic way seeing issues. An analytic, performance oriented way of thinking, especially in organizations, can have more subtle ethical consequences, such that those individuals are less likely to engage in helpful behaviors that bolster the social atmosphere at that organization (Bergeron, 2007; Bergeron, Shipp, Rosen, & Furst, 2011).

      While a solution may be straightforward, would most engineers be willing to embrace such a solution?

      There is one way in which the problem may not be quite so bad as the authors fear. They suggest that a focus on mechanical reasoning may actively weaken our social and ethical thinking skills. This is one way of reading what the neuroscience tells us, however I would suggest another way of understanding it. The fact that social, emotional and moral cognition areas are suppressed during mechanical reasoning need not mean they are being weakened. Another way of looking at this suppression is that it is protective – it gets those brain areas out of the way. In any case, there is no reason to suppose the suppression actively weakens the function of those brain areas. It merely fails to develop them. This is a problem which, I suggest, can be overcome by two strategies: (1) training to ensure the empathic, as opposed to the analytic brain network, is deployed during social and ethical decision making and (2) training to develop the empathic brain network. Neither of these strategies need impugn the intention to predominantly train engineering students in mechanical reasoning. They merely require engineering schools to embrace and positively require a modest number of courses which can help stem one side of their students brains’ from withering away. Training of the empathic network may be accomplished by classes on empathic listening, social skills for leadership, art appreciation, history, literature, as well as philosophy classes on happiness and ethics. Such classes are likely to greatly help students to possess more balanced brains and live more balanced lives. As a result they are likely to improve student performance, rather than detract from their engineering skills. My concern, however, is that many professional engineers are likely to be so unfamiliar with these forms of understanding, that they will find it hard to endorse including them in the curriculum. Indeed, some engineering faculty may be so unfamiliar with the value of these types of thinking that they find them threatening, and so react by being dismissive and actively fighting their introduction in the curriculum. In other words, they might be ‘blind’ to the value of such social, ethical and moral insights because they lack they the cognitive ability to perceive them, let alone appreciate them. Hence, while there may be many enlightened Engineering faculty, such as those who have written this discussion piece, I suspect a different voice will triumph in faculty meetings. If psychology has taught us anything, it is that human decision making is rarely guided by passion for the truth as much as by other emotions, especially emotions associated with a sense of threat to self. Hence, while it may be that no reasonable person could deny the brain has been engineered by evolution such that it needs to be educated in different modalities, I rather doubt this truth will guide engineering faculty.

      I'd like to acknowledge Jared Friedman for thoughtful input to the reflections that I offer here.

      Anticevic, A., Cole, M. W., Murray, J. D., Corlett, P. R., Wang, X. J., & Krystal, J. H. (2012). The role of default network deactivation in cognition and disease. Trends Cogn Sci, 16(12), 584-592. doi:10.1016/j.tics.2012.10.008 S1364-6613(12)00244-6 [pii]

      Baron-Cohen, S., Wheelwright, S., Spong, A., Scahill, V., & Lawson, J. (2001). Are intuitive physics and intuitive psychology independent? A test with children with Asperger Syndrome. Journal of Developmental and Learning Disorders, 5(1), 47-78.

      Bergeron, D. M. (2007). The potential paradox of organizational citizenship behavior: Good citizens at what cost? Academy of Management Review, 32(4), 1078-1095. Bergeron, D. M., Shipp, A. J., Rosen, B., & Furst, S. A. (2011). Organizational citizenship behavior and career outcomes the cost of being a good citizen. Journal of Management, 0149206311407508.

      Buckner, R. L., Andrews-Hanna, J. R., & Schacter, D. L. (2008). The Brain's Default Network: Anatomy, Function, and Relevance to Disease. Annals of the New York Academy of Sciences, 1124(1), 1-38. doi:10.1196/annals.1440.011 Cech, E. A. (2014). Culture of disengagement in engineering education? Science, Technology, & Human Values, 39(1), 42-72.

      Friedman, J., Jack, A. I., Rochford, K., & Boyatzis, R. (2015). Antagonistic Neural Networks Underlying Organizational Behavior. Organizational Neuroscience (Monographs in Leadership and Management, Volume 7) Emerald Group Publishing Limited, 7, 115-141.

      Friedman, J. P., & Jack, A. I. (2017). Mapping cognitive structure onto the landscape of philosophical debate: An empirical framework with relevance to problems of consciousness, free will and ethics. Review of Philosophy and Psychology.

      Jack, Dawson, A. J., Begany, K. L., Leckie, R. L., Barry, K. P., Ciccia, A. H., & Snyder, A. Z. (2012). fMRI reveals reciprocal inhibition between social and physical cognitive domains. Neuroimage, 66C, 385-401. doi:S1053-8119(12)01064-6 [pii] 10.1016/j.neuroimage.2012.10.061

      Jack, Dawson, A. J., & Norr, M. E. (2013). Seeing human: distinct and overlapping neural signatures associated with two forms of dehumanization. Neuroimage, 79, 313-328. Jack, A. I., Friedman, J. P., Boyatzis, R. E., & Taylor, S. N. (2016). Why do you believe in God? Relationships between religious belief, analytic thinking, mentalizing and moral concern. PloS one, 11(3), e0149989.

      Rochford, K. C., Jack, A. I., Boyatzis, R. E., & French, S. E. (2016). Ethical leadership as a balance between opposing neural networks. Journal of Business Ethics, 1-16.

      Shulman, G. L., Fiez, J. A., Corbetta, M., Buckner, R. L., Miezin, F. M., Raichle, M. E., & Petersen, S. E. (1997). Common Blood Flow Changes across Visual Tasks: II. Decreases in Cerebral Cortex. J Cogn Neurosci, 9(5), 648-663. doi:10.1162/jocn.1997.9.5.648

      Small, D. A., Loewenstein, G., & Slovic, P. (2007). Sympathy and callousness: The impact of deliberative thought on donations to identifiable and statistical victims. Organizational Behavior and Human Decision Processes, 102(2), 143-153. doi:10.1016/j.obhdp.2006.01.005

      Wang, L., Zhong, C.-B., & Murnighan, J. K. (2014). The social and ethical consequences of a calculative mindset. Organizational Behavior and Human Decision Processes, 125(1), 39-49.

      Zhong, C.-B. (2011). The ethical dangers of deliberative decision making. Administrative Science Quarterly, 56(1), 1-25.

    1. Bagnato A, Rosano L, Spinella F, Di Castro V, Tecce R, Natali PG. Endothelin B receptor blockade inhibits dynamics of cell interactions and communications in melanoma cell progression. Cancer Res. 2004;64:1436–43. [PubMed]

      Bagnato investigates the agonists of the endothelin B receptor (ET(B)R), endothelin-1 (ET-1) and ET-3 and the role that they play in tumorigenesis.

      Bagnato states that (ET(B)R) is a marker for tumor progression. This study supported the role of ET-1 and ET-3 to impede the usual interactions between hosts and tumors.

      The ligands also promote development of cutaneous melanoma. Melanoma is a cancer in melanin-producing cells. Cutaneous melanoma is melanoma that occurs on skin.

    1. porque podría perdidas de protección al ser insoluble en agua y soluble en grasas. Al añadirle el terpeno se busca que la estructura del jabón se adhiera al filtro. Una vez realizadas las pruebas in-vitro y determinar la eficiencia del proceso se podrá realizar el diseño de una planta piloto con las condiciones adecuadas a la formulación más estable del jabón. 6AntecedentesSe llaman jabones las sales de sodio o de potasio de los ácidos grasos. Por extensión el ácido puede ser cualquier carboxilato ("tall-oil", "rosin-oil"), y el metal alcalino puede reemplazarse por una amina, amida o etanol amina. Si se usa un metal pesado polivalente se obtiene una substancia liposoluble. El jabón se prepara mediante saponificación de los triglicéridos de origen vegetal o animal por unasolución de hidróxido alcalino. De manera general se puede decir que los carboxilatos de cadena corta (C10-12) son rápidamente soluble en agua, producen espuma y toleran el agua dura. Sin embargo son también irritantes para las pieles sensibles. Por otra parte los carboxilatos en C18 saturados o insaturados no son irritantes y pueden usarse en jabones y cremas fáciles, pero se solubilizan en agua muy lentamenteLos Jabones humectantes poseen elementos que permiten que la piel mantenga su nivel de humedad adecuado.Las leches solares y cremas son emulsiones (toda emulsión es la mezcla de grasa o aceite, agua y tenso activo, donde el tenso activo hace que se junte la parte acuosa con la oleosa). Las emulsiones son buenos vehículos para contener los filtros porque forman una capa sobre la piel de espesor adecuado lo que ayuda a hacer efectivo dicho filtro y a mantener la hidratación de la piel. Los jabones son agentes tensioactivos o surfactantes. Se trata de sustancias que disminuyen la tensión superficial de un líquido o que actúan sobre la superficie de contacto entre dos fases, por ejemplo dos líquidos inmiscibles. Estos se pueden clasificar en:Aniónicos: contienen carga negativa en solución acuosa (jabones, alquilbenceno sulfonatos lineales, alfa olefín sulfonatos, dialquil sulfonatos, entre otros). Catiónicos: contienen carga positiva en solución acuosa (aminas grasas y sales, sales de amonio cuaternarias, entre otros). No iónicos: no se disocian en el agua, carecen de carga (alquil fenoles polietoxilados, alcoholes grasos polietoxilados, entre otros). Anfóteros: dependiendo del pH se comportan como aniónicos o catiónicos (aminoácidos, las betaínas o los fosfolípidos).(Rojas, 2015; Jean, 2002)Se denomina protectores solares o foto protectoresa todos aquellos, que se aplican sobre lapiel con el fin de protegerla de los efectos perjudiciales de las radiaciones solares ultravioleta A (UVA) y/o ultravioleta B (UVB). Esto es posible porque en su composición llevan unas sustancias denominadas filtros, capaces de frenar la acción de uno y/u otro tipo de radiación. Los filtros solares se pueden clasificar en físicos (Actúan por reflexión de la luz) y químicos (Actúan por absorción de la radiación solar ultravioleta). Los filtros químicos u orgánicos son los másusados. Sonsustancias químicas de síntesis que actúan como cromóforos absorbiendo energía. Al incidir un fotón sobre el filtro químico, éste absorbe la energía, y al volver a su estado inicial libera este exceso de energía en forma de radiación fluorescente o transformándose enun isómero o fotoproducto relativamente activoA diferencia de las pantallas físicas, cada filtro químico tiene un espectro deabsorción determinado.Los filtros que absorben UVBmás utilizados son derivados del ácido p-amino-benzoico (PABA), octocrileno homosalato, 4-metilbenciliden alcanfor, etil-hexil-metoxicinamato, fenil-bencimidazol sulfónico.Mientrasque los filtros físicos más utilizados son: el óxido de zinc, el dióxido de titanio y la mica. (Cázares, 2013;Castanedo,2013)La flavonoides son un conjunto de antioxidantes que se encuentran en algunas frutas y vegetales de hoja verde como espinaca, acelgas, lechuga, etc. Estos tipos de antioxidantes se caracterizan por contener en su interior vitamina E, la cual es insoluble en agua.(Popa, 2014)Investigando los trabajos realizados, se encontró que existen productos en el mercado que incluyen el protector solar, pero esos jabones son elaborados de forma casera, y los industrializados tienen un nivel de FPS 15-50, lo cual no brinda la protección que buscamos, se quiere desarrollar un producto con una mayor protección, y que garantice la salud de la piel. Con productos estandarizados. Por otro lado la avobenzona es un compuesto que proviene de los dibenzoilmetano, este tipo de compuesto activoes solo soluble en grasas y acetites.(SUNJIN, 2013)JustificaciónLa investigación consiste en crear un jabón facial que contenga en su fórmula un filtro solar, para ayudar a evitar las quemaduras de la piel provocadas por el sol. Este jabón es del tipo humectante, complementado por la adición de un filtro solar. Para evitar que se desperdicie el producto, y debido a las características aplicación directa se enfocó el proyecto en el área facial. Además de que es la parte más expuesta al sol. La mayor problemática que se podría mencionar seria la solubilidad de nuestro filtro solar en agua, pero para evitar ese tipo de problemas ya contemplados, utilizamos compuestos de filtros solares insolubles en agua.Se busca ampliar el conocimiento de las propiedades físicas y químicas de los jabones con protector solar, con resultados estadísticos experimentales generados con las variables del proceso. Se espera diseñar un proceso que sea rentable. La mejora con respecto de los trabajos anteriores es la búsqueda de una formulación que no se retire de la piel al lavar el jabón.El resultado de la investigación será un diseño de una planta piloto, y la formulación con mejores propiedades fisicoquímicas y reológicas. Metodología propuestaSe realizará el jabón por el método de saponificación,añadiendo un filtro solar.Las variablesdel proceso experimental son: tenso activos, concentración de filtro solar, y tiempo de exposición a los rayos solares. El resultadoestadístico se empleara para elaborar el diseño y presupuesto de la planta piloto, basado en la formulación más estable. Se buscará un proceso con mayor eficiencia, y que no genere impacto ambiental.Se aplicara metodología univariante para el estudio de la formulación, realizando triplicado de las pruebas delAnalito.La investigación conrespectoa la planta piloto solo abarca el diseño, dejando el conocimiento para posterior aplicación.Para obtener una muestra representativa se realizara muestreo en diferentes zonas del jabón, para una posterior homogenización y dilución, las pruebas se realizaran por triplicado. Las pruebas realizadas a la muestra de jabón son las siguientes:1.Estudio de propiedades reológicas2.Análisis espectrofotométrico3.Determinación de pH. 4.Prueba de saponificación5.Pruebas de formulación 6.Pruebas de vida útil7.Fuente de luz8.Pruebas de compuesto activoFactibilidadSe cuenta con la asesoría de expertos en métodos espectrofotométricos para el análisis de los filtros solares y en biotecnología, y es factible conseguir las instalaciones y materiales necesarios, en el CUCEI,o en la Escuela Politécnica de Guadalajara. Los insumos no representan costos elevados. El laboratorio de Reológia del CUCEI cuenta con reómetro rotacional, y el laboratorio de instrumentación cuenta con espectrofotómetro y potenciómetro. Se cuenta con software estadístico.Referencias[1]Castanedo, J., Torres, B. & Valdés, G. (2013). Evaluación in vitro de la protección uva de los bloqueadores solares para prescripción en México. Mayo 16, 2017, de Gaceta Médica de México Sitio web: http://www.anmm.org.mx/GMM/2013/n3/GMM_149_2013_3_292-298.pdf[2]Cázares, J., Álvarez, B., González, G., & Pérez, A. (2013). Evaluación in vitro de la protección uva de los bloqueadores solares para prescripción en México. Gaceta Médica de México, 149(3), 292-298.[3]Rojas, E. (2015). Cambios significativos de la NOM-073-SSA1-2015, Estabilidad de fármacos y medicamentos, así como de remedios herbolarios.Mayo 16, 2017, de Secretaria de Salud Sitio web: http://www.amegi.com.mx/curso_practico/Estabilidades.pdf[4]Jean, L. (2002). Surfactantes, Cuaderno FIRP 300 A Versión # 2Laboratorio FIRP Escuela de Ingeniería Química, universidad de los andes Mérida 5101 Venezuela[5]Mitrinova, Z., Tcholakova, S., Popova, Z., Denkov, N., Dasgupta, B. R., & Ananthapadmanabhan, K. P. (2013). Efficientcontrol of the rheological and surface properties of surfactant solutions containing C8–C18 fatty acids as cosurfactants. Langmuir, 29(26), 8255-8265.[6]Popa, E. (2014). Método para la obtención de flavonoides de hojas de Tamarindus indica Lin.Mayo 16, 2017de MULTIMEDSitio web: http://www.multimedgrm.sld.cu/articulos/2010/v14-3/2.html [7]SUNJIN. (2013). Catálogos de Cosmética. Mayo 14, 2017, de SUNJIN Sitio web: http://www.sunjinbs.com/data/catalog/2013.03%20Part1%20Catalog%20Final%20-%20SPANISH.pdf[8]UANL. (2005). Desarrollan jabones con protección solar y repelente para mosquitos. Abril1, 2017 de Universidad Autónoma de Nuevo LeónSitio web: http://www.uanlmexico.mx/noticias/investigacion/desarrollan-jabones-con-proteccion-solar-y-repelente-para-mosquitos.htmlMostrar barra lateralPágina 1 de 4AlejarAcercarRetroceder páginaAvanzar páginaPantalla completaImprimir

      no entiendo lo que quieres decir con podría perdidas

    1. L. H. Corbit, B. C. Chieng, B. W. Balleine, Neuropsychopharmacology 39, 1893–1901 (2014).

      Corbit et al. were interested in how control can be reestablished after drug abuse.

      The authors assessed whether chronic drug use shifts behavior from a goal-oriented process to a habit learning process, and studied the physiological implications of those changes. In addition, they tested whether N-acetylcystine, a treatment previously shown to prevent relapse into cocaine use, could prevent the rapid formation of habits after drug exposure.

  3. Apr 2018
    1. S. Mallick, H. Li, M. Lipson, I. Mathieson, M. Gymrek, F. Racimo, M. Zhao, N. Chennagiri, S. Nordenfelt, A. Tandon, P.  Skoglund, I. Lazaridis, S. Sankararaman, Q. Fu, N. Rohland, G. Renaud, Y. Erlich, T. Willems, C. Gallo, J. P. Spence, Y. S. Song, G. Poletti, F. Balloux, G. van Driem, P. de Knijff, I. G. Romero, A. R. Jha, D. M. Behar, C. M. Bravi, C. Capelli, T. Hervig, A. Moreno-Estrada, O. L. Posukh, E. Balanovska, O. Balanovsky, S. Karachanak-Yankova, H. Sahakyan, D. Toncheva, L. Yepiskoposyan, C. Tyler-Smith, Y. Xue, M. S.Abdullah, A. Ruiz-Linares, C. M. Beall, A. Di Rienzo,  C. Jeong, E. B. Starikovskaya, E. Metspalu, J. Parik, R.Villems, B. M. Henn, U. Hodoglugil, R. Mahley, A. Sajantila, G. Stamatoyannopoulos, J. T. S. Wee, R.Khusainova, E. Khusnutdinova, S. Litvinov, G. Ayodo, D. Comas, M. F. Hammer, T. Kivisild, W. Klitz, C. A.Winkler, D. Labuda, M. Bamshad, L. B. Jorde, S. A. Tishkoff, W. S. Watkins, M. Metspalu, S. Dryomov, R. Sukernik, L. Singh, K. Thangaraj, S. Pääbo, J. Kelso, N. Patterson, D. Reich, The Simons Genome Diversity Project: 300 genomes from 142 diverse populations. Nature 538, 201–206 (2016). doi:10.1038/nature18964pmid:27654912

      This report describes the data set obtained by the Simons Genome Diversity Project (SGDP), which contains genome data from 300 individuals from 142 diverse populations, and reveals more features of human genetic variation. The SGDP focused on smaller populations than the 1000 Genomes Project.

    2. L. Teng, B. He, J. Wang, K. Tan, 4DGenome: A comprehensive database of chromatin interactions. Bioinformatics 31, 2560–2564 (2015). doi:10.1093/bioinformatics/btv158pmid:25788621

      Teng et al. describe a database they have curated called 4DGenome. They have collected published data related to how chromatin interacts with itself and make it available through a database that other researchers can use as a centralized location for chromatin interaction data.

    1. "#!$.0!L#*$0'!7$4$02!*$!I&(6'!$4S0!0*;.$/!5*66*&#!'&664%2!B0%!/04%!$&!B%&J*'0!I.4$!0'()4$&%2!%0;4%'!42!0P(46!$%04$:0#$!<&%!466!*#!;%4::4%!4#'!.*;.!2).&&6K!

      I wonder what this would be today?

    1. Mahendra et al., 2007

      <br>

      Analytic note: AIDS-related stigma and discrimination remains a pervasive problem in health care institutions worldwide. Previous studies have demonstrated that AIDS-related stigma is a common phenomenon worldwide that occurs in a variety of contexts, including the family, community, workplace, and health care settings. This article discusses the effectiveness of a stigma-reduction intervention, with the goals of reducing discriminatory practices and improving quality of care for people living with HIV/AIDS in India. A mixed-method research is used and the study findings highlight issues peculiar to the health care sector in limited-resource settings. Strikingly, these findings mirrored in our study, done in a resource-rich context, confirm that HIV/AIDS-related stigma and discrimination in healthcare settings persist, despite progress made with various stigma-reduction interventions.

      Source excerpt: The health care setting is a particularly conspicuous context for HIV/AIDS-related stigma and discrimination. In this context people living with HIV or AIDS (PLWHA) often discover their status, and it is where people living with HIV have the potential to gather information about how to care for themselves and prevent transmission to others, as well as get treatment and care. Because of stigma, there have been various reports of HIV positive people receiving inferior care or being denied care altogether (Ogden & Nyblade, 2005). For example, health care workers are influenced by the attitudes of the greater society, and prevailing negative attitudes can result in discrimination. In India, a country with an estimated HIV/AIDS. While AIDS-related stigma in health facilities has become better understood over the years, it is only recently that responses are moving beyond documenting negative experiences to implementing interventions. The findings reported on in this paper highlight that stigmatizing attitudes and discriminatory behaviors towards people living with HIV/AIDS are big challenges in hospitals in India, and that there are particular issues in this limited resource setting that are often not taken into account in global discussions about HIV-related stigma in the health care sector.

      Full Citation: Mahendra, V. S., Gilborn, L., Bharat, S., Mudoi, R., Gupta, I., George, B. et al. (2007) Understanding and measuring AIDS-related stigma in health care settings: a developing country perspective. SAHARA Journal 4(2), 616–625. https://doi.org/10.1080/17290376.2007.9724883

    2. Fear of stigma and being discriminated against has continued to be a companion of the HIV pandemic since its outbreak more than 30 years ago, despite significant efforts at individual, community and institutional levels (Holzemer & Uys, 2004; Pulerwitz et al., 2010; Aggleton et al., 2011)

      <br>

      Analytic Note (Source 1): Stigma is still perceived as a major limiting factor in HIV/AIDS prevention and care. HIV/AIDS stigma and discrimination continue to influence people living with and affected by HIV disease as well as their health care providers, wherever they live. This review article discusses HIV/AIDS stigma, the impact of AIDS stigma and how healthcare providers can help to manage HIV/AIDS stigma in South Africa. In defining stigma, authors look into different definitions of stigma by various authors and make particular allusion to Goffman’s definition of stigma as ‘an attribute that is deeply discrediting within a particular social interaction’, as a ‘spoiled social identity’ and ‘a deviation from the attributes considered normal and acceptable by society. On the impact of AIDS stigma, the article gives an insight into the fear of, and the stigma associated with, HIV were significantly related to the HIV-affected person’s decision to not seek timely healthcare services. This article provided a base for our study.

      Analytic Note (Source 2): According to the late Jonathan Mann, the former WHO Head of Global Program on AIDS recognized stigma, discrimination, blame, and denial as potentially the most difficult aspects of HIV/AIDS to address. This article summarizes the key contributions of the Horizons stigma research portfolio to describing the drivers of stigma, identifying effective interventions and approaches for reducing stigma in different settings, and improving methods for measuring stigma. Horizons developed and implemented a wide range of activities in collaboration with numerous local and international partners in Africa, Asia, and Latin America. This article is cited to corroborate the existence of stigma and discrimination in different settings including healthcare.

      Analytic Note (Source 3): This article reflects on the progress over the last 30 years with respect to older and more emergent forms of education concerning HIV and AIDS. This education includes treatment education, HIV prevention education, and education to encourage positive and supportive community response. The article emphasizes on the careful analysis of different forms of HIV-related education, the consequences, effects and identifying specific effectivity of HIV-related education in order to achieve positive outcomes. The article also discusses new ways of seeing and understanding the need to support processes that “think” ahead of the epidemic. This article does not discuss HIV educational strategies that may reduce stigma and discrimination in healthcare settings in the globalized world. However, this article is relevant, though not the basis of our research, because it highlights the difficulty to provide HIV education to stigmatized and discriminated groups after more than 30 years since the start of the epidemic. Giving the negative social responses to HIV and AIDS, education is vital in contributing to a positive response. Individual and community empowerment are the necessary mechanisms by which social inclusion can be promoted.

      Source Excerpt (Source 1): Other researchers have reported that health care personnel knew very little about the potential for HIV contamination in the workplace. In Kuwait, some family doctors knew less than they should have about HIV and looked upon AIDS patients negatively, even in the third decade of the AIDS pandemic. Similarly, AIDS stigma and discrimination continue to influence people living with and affected by HIV disease as well as their health care providers, particularly in southern Africa where the burden of AIDS is so significant. Stigma is perceived as a major limiting factor in primary and secondary HIV/AIDS prevention and care. Similar to the findings of Adebajo, Bamgbala and Oyediran (2003) in Nigeria, the results in Kuwait showed that nurses and laboratory technicians also had negative attitudes toward AIDS patients. Health care workers’ poor attitudes and inadequate care in these anecdotal reports could be related to stigma. This argument was reaffirmed in our study.

      Source Excerpt (Source 2): Horizons and partners recognized from the outset that to improve the environment for people with HIV in health-care settings, it was important for management and health providers to acknowledge that stigma exists in their facilities. They found that a participatory approach that included ongoing sharing of data about levels and types of stigma in institutions helped build staff and management support for stigma-reduction activities

      Source Excerpt (Source 3): “As we approach the 30th anniversary of the date on which AIDS was first identified, it is salutary to reflect on progress made in tackling the epidemic. This is especially so in relation to education and HIV, a field that is laden with possibilities but one that has in many ways eluded its potential. Despite these difficulties, education in a variety of forms holds the potential to arrest and turn back the three epidemics (Mann, 1987) to which HIV has given rise: (a) the epidemic of AIDS, which has caused untold harm through serious illness and death; (b) the epidemic of HIV, in many ways silent, unseen, and often unknown; and (c) the epidemic of fear, shame and denial that has led people living with HIV to be stigmatized, ostracized, discriminated against, and denied their human rights”.

      Full Citation (Source 1): Holzemer, W. L. & Uys, L. R. (2004) Managing AIDS stigma. SAHARA Journal 1(3), 165–174. doi/pdf/10.1080/17290376.2004.9724839

      Full Citation (Source 2): Pulerwitz, J., Michaelis, A., Weiss, E., Brown, L. & Mahendra, V. (2010) Reducing HIV-related stigma: lessons learned from Horizons research and programs. Public Health Reports 125(2), 272–281. doi: 10.1177/003335491012500218

      Full Citation (Source 3): Aggleton, P., Yankah, E. & Crewe, M. (2011) Education and HIV/AIDS-30 years on. AIDS Education and Prevention 23(6), 495–507DOI: 10.1521/aeap.2011.23.6.495

    3. Discrimination against people living with HIV and AIDS still persists more than three decades into the HIV pandemic (Skinner & Mfecane, 2004; Simbayi et al., 2007; Marsicano et al., 2014).

      <br>

      Analytic Note (Source 1): Stigma and discrimination in healthcare remains a pervasive problem. This review paper argues that stigma has a far more insidious influence, going well beyond the individual and potentially impacting on all sectors of society. As in our study, this article underlines how stigma undermines a person's identity and capacity to cope with the disease at an individual level.

      Analytic Note (Source 2): The study examines internalized AIDS stigmas among people living with HIV/AIDS in Cape Town, South Africa. It demonstrates that discrimination experiences are common and internalized AIDS stigmas were prevalent among people living with HIV/AIDS. Our article confirms the persistence of social stigmas and discrimination and internalized stigma.

      Analytic Note (Source 3): HIV/AIDS has evolved but stigma and discrimination persists. This article measures the frequency of discrimination and assesses its correlates among people living with HIV in France. The survey uses data from a national representative survey, the ANRS-Vespa2 study, conducted in France in 2011 among 3022 male and female HIV-positive patients followed at hospitals. The most striking finding relates to women from sub-Saharan Africa reporting the highest levels of discrimination, whereas heterosexual non-African men reporting the lowest. In this study, HIV-related stigma and gender intertwine. We cited this article because it demonstrates that people living with HIV are exposed to stigma not only because of their HIV-positive status but also because they are blacks or belong to a minority population in France, as is the case in Belgium and most European Union countries.

      Source Excerpt (Source 1): Discrimination has significant impacts on diagnosis and treatment. For the individual it can delay diagnosis and therefore also delay entry into treatment and adoption of a healthy lifestyle. There is no motivation to be tested, as the person sees no benefit when the diagnosis of HV is seen as equivalent to death, and they are likely to experience discrimination.

      Source Excerpt (Source 2): Discrimination experiences were common and internalized AIDS stigmas were prevalent among people living with HIV/AIDS in Cape Town.

      Source Excerpt (Source 3): Since the advent of AIDS, discrimination has remained at the core of the experience of people living with HIV (PLHIV). PLHIV who belong to minority groups are exposed to discrimination not only on the grounds of their HIV infection but also because of rejecting attitudes towards drug users, homosexuals and black people.

      Full Citation (Source 1): Skinner, D. & Mfecane, S. (2004) Stigma, discrimination and the implications for people living with HIV/AIDS in South Africa. SAHARA Journal 1(3), 157–164. DOI: 10.1080/17290376.2004.9724838

      Full Citation (Source 2): Simbayi, L. C., Kalichman, S., Strebel, A., Cloete, A., Henda, N. & Mqeketo, A. (2007) Internalized stigma, discrimination, and depression among men and women living with HIV/AIDS in Cape Town, South Africa. Social Science & Medicine 64(9), 1823–1831. DOI:10.1016/j.socscimed.2007.01.006

      Full Citation (Source 3): Marsicano, E., Dray-Spira, R., Lert, F., Aubriere, C., Spire, B. & Hamelin, C. (2014) Multiple discriminations experienced by people living with HIV in France: results from the ANRS-Vespa2 study. AIDS Care 26 (Supplement 1), S97–S106. DOI: 10.1080/09540121.2014.907385

    4. Stigma and discrimination within health care settings remain a public health challenge across diverse cultural settings (Link & Phelan, 2006; Lin et al., 2012).

      <br>

      Analytic Note (Source 1): Stigma and discrimination has public health implications worldwide. This essay discusses five interrelated components of stigma namely labelling, stereotyping, grouping, discrimination and loss of status and self-esteem and the exercise of power. It also discusses direct, structural, and insidious (labelling) as major forms of discrimination. This essay is vital as it forms a base for our research, whereby stigma and discrimination is experienced by women living with HIV/AIDS.

      Analytic Note (Source 2): HIV-related stigma and discrimination goes beyond borders and culture. This study discusses factors that are associated with the level of empathy among healthcare service providers in China. The authors hypothesize that providers’ empathy levels would be associated with a lower level of avoidance attitudes to PLWHA at work. However, the study finds empathy, as well as stigma and discrimination among healthcare providers towards people living with HIV/AIDS in China, similar to what we found in our study.

      Source Excerpt (Source 1): Stigma processes have a dramatic and probably under recognized effect on the distribution of life chances such as employment opportunities, housing, and access to medical care. We believe that under recognition occurs because attempts to measure the impact of stigma have generally restricted analysis to one circumstance (e.g., AIDS, obesity, race, or mental illness) and examined only one outcome (e.g., earnings, self- esteem, housing, or social interactions). If all stigmatized conditions were considered together and all outcomes examined we believe that stigma would be shown to have an enormous impact on people’s lives. To exemplify one part of this point we analyzed nationally representative data from the USA, in which multiple stigmatizing factors were taken into consideration in relation to self-esteem, and found that stigma could explain a full 20% of the variance beyond the effects of age, sex, and years of education.

      Source Excerpt (Source 2): HIV-related stigma is prevalent worldwide and greatly undermines public health efforts to combat the epidemic. Perceived stigma is associated with stress, depression, and lower perceived quality of life among people living with HIV/AIDS (PLWHA). More directly, health service providers’ stigmatizing attitudes and avoidance behaviours toward PLWHA discourage people from seeking HIV testing and counselling, participating in prevention programs, accessing HIV treatment, and adhering to antiretroviral therapies. To start to address HIV-related stigma in health care settings, researchers have made efforts to understand its multiple origins. Factors contributing to stigmatizing and discriminatory responses among service providers include a lack of appropriate knowledge and training; the perception that HIV/AIDS is incurable; insufficient institutional support and perceived societal discrimination against HIV; lack of knowledge and supply of universal precautions and post exposure prophylaxis and legislative or policy gaps including health controls, quarantine, compulsory internment, and/or segregation in hospital etc.

      Full Citation (Source 1): Link, B. G. & Phelan, J. C. (2006) Stigma and its public health implications. Lancet 367(9509), 528–529. DOI:10.1016/S0140-6736(06)68184-1

      Full Citation (Source 2): Lin, C., Li, L., Wan, D., Wu, Z. & Yan, Z. (2012) Empathy and avoidance in treating patients living with HIV/AIDS (PLWHA) among service providers in China. AIDS Care 24(11), 1341–1348. doi: 10.1080/09540121.2011.648602

    5. and can be a determinant factor in health inequalities (Hatzenbuehler et al., 2013).

      <br>

      Analytic Note: Stigma is pervasive and a fundamental cause of health and social inequalities. This article discusses the persistence of inequality because of certain characteristics of the fundamental causes. It examines how fundamental social cause influences multiple disease outcomes through multiple risk factors among a substantial number of people. It also indicates that fundamental social cause involves access to resources such as knowledge, money, power, prestige, and beneficial social connections. This article was useful in our research as we described the causes of stigma in healthcare settings. Our findings confirmed the existing HIV stigma.

      Source Excerpt: Bodies of research pertaining to specific stigmatized statuses have typically developed in separate domains and have focused on single outcomes at 1 level of analysis, thereby obscuring the full significance of stigma as a fundamental driver of population health. Here we provide illustrative evidence on the health consequences of stigma and present a conceptual framework describing the psychological and structural pathways through which stigma influences health. Because of its pervasiveness, its disruption of multiple life domains (e.g., resources, social relationships, and coping behaviors), and its corrosive impact on the health of populations, stigma should be considered alongside the other major organizing concepts for research on social determinants of population health.

      Full Citation: Hatzenbuehler, M. L., Phelan, J. C. & Link, B. G. (2013) Stigma as a fundamental cause of population health inequalities. American Journal of Public Health 103(5), 813–821. doi: 10.2105/AJPH.2012.301069

    1. Guards restrict access to the facility and prevent escape, but do almost nothing else.

      <br>

      Analytic note: The claim that officials provide little to no governance is surprising, and one that I initially met with skepticism. However, the number of confirming accounts, from a wide range of source (cited here, but also a large literature), provide confidence in the claim. More generally, as one observes the shockingly low quality of official governance in many Latin American prisons, the case in Bolivia becomes less unusual and more plausible.

      Full Citations: Baltimore, B., A. Bastien van der Meer, M. Brennan, M. Burton, M. Castillo, L. Cavise, A. Davis, J. Friedman-Rudovsky, A. Mendoza, D. Oliveira, J. Somberg,V. Spinazola, K. Staskawicz, L. Stern, and L. Tockman, et al. 2007. Report of Delegation to Bolivia. New York: National Lawyers Guild.

      Organization of American States. 2007. Access to Justice and Social Inclusion: The Road Towards Strengthening Democracy in Bolivia. Washington, DC: Inter-American Commission on Human Rights.

    1. Siegel RL, Miller KD, Jemal A. Cancer statistics, 2016. CA Cancer J Clin 2016;66:7-30. 2. Shah RB, Zhou M. Recent advances in prostate cancer pathology: Gleason grading and beyond. Pathol Int 2016;66:260-72. 3. Blute ML, Bergstralh EJ, Iocca A, Scherer B, Zincke H. Use of gleason score, prostate specific antigen, seminal vesicle and margin status to predict biochemical failure after radical prostatectomy. J Urol 2001;165:119-25. 4. Epstein JI, Egevad L, Amin MB, Delahunt B, Srigley JR, Humphrey PA. The 2014 International Society of Urological Pathology (ISUP) consensus conference on Gleason grading of prostate cancer. Definition of grading patterns and proposal for a new grading system. Am J Surg Pathol 2016;40:244-52. 5. Cole AI, Morgan TM, Spratt DE, Palapattu GS, He C, Tomlins SA, et al. Prognostic value of percent Gleason grade 4 at prostate biopsy in predicting prostatectomy pathology and recurrence. J Urol 2016;196:405-11. 6. Amin A, Partin A, Epstein JI. Gleason score 7 prostate cancer on needle biopsy: Relation of primary pattern 3 or 4 to pathological stage and progression after radical prostatectomy. J Urol 2011;186:1286-90. 7. Alenda O, Ploussard G, Mouracade P, Xylinas E, de la Taille A, Allory Y, et al. Impact of the primary Gleason pattern on biochemical recurrence-free survival after radical prostatectomy: A single-center cohort of 1,248 patients with Gleason 7 tumors. World J Urol 2011;29:671-6.

      Research is needed to further this discussion. Evaluate sources and explore further off of ProQuest.

    1. Building capacity between the private emergency food system and the local food movement: Working toward food justice and sovereignty in the global NorthMcEntee, Jesse C; Naumova, Elena N. Journal of Agriculture, Food Systems, and Community Development; Ithaca Vol. 3, Iss. 1,  (Fall 2012): 235-253. Full textFull text - PDFDetailsReferences 74Hide highlighting $j(function($) { //$('.psycArticlesImage, .textPlusGraphicsImageClass').addClass('imageViewerZoom'); jQuery('.psycArticlesImage, .textPlusGraphicsImageClass') .filter(function() { return jQuery(this).closest(".research_topic").length == 0; }) .addClass('imageViewerZoom'); var viewerOptions = { url: 'data-original', hidden: function(e) { //console.log("Closed Image Viewer"); pqga.pushEventToGA('closeImageViewerFullTextView'); } }; var fieldDivId = fulltext_field_MSTAR_1285242266.id; if (jQuery(".research_topic").length == 0) { $('#' + fieldDivId).viewer(viewerOptions); } else { var decodeHtml = function(html) { var txt = document.createElement("textarea"); txt.innerHTML = html; return txt.value; } jQuery(".research_topic .intraDocLink") .each(function(idx, el) { var imgEl = jQuery("img", jQuery(el).parent()); imgEl.wrap(el.outerHTML); imgEl.attr('title', decodeHtml(imgEl.attr('title'))); imgEl.attr('alt', decodeHtml(imgEl.attr('alt'))); }); } }); Translate Full textUndo Translation TranslateUndo Translation Press the Escape key to close FromArabicChinese (Simplified)Chinese (Traditional)EnglishFrenchGerman ItalianJapaneseKoreanPolishPortugueseRussianSpanishTurkishToArabicChinese (Simplified)Chinese (Traditional)FrenchGermanItalianJapaneseKoreanPolishPortugueseRussianSpanishTurkishTranslateTips.images = '/assets/r20181.3.0.390.2236/pqc/javascript/prototip/images/prototip/';Translation in progress... [[missing key: loadingAnimation]]The full text may take 40-60 seconds to translate; larger documents may take longer.Cancel OverlayEndTurn on search term navigationTurn on search term navigationJump to first hitListen   Headnote Abstract One area of food system research that remains overlooked in terms of making urban-rural distinctions explicit is the private emergency food system of food banks, food pantries, soup kitchens, and emergency shelters that exists throughout the United States. This system is an important one for millions of food-insecure individuals and today serves nearly as many individuals as public food assistance. In this article, we present an exploratory case that presents findings from research looking at the private emergency food system of a rural county in northern New England, U.S. Specifically, we examine the history of this national network to contextualize our findings and then discuss possibilities for collaboration between this private system and the local food movement (on behalf of both the public and the state). These collaborations present an opportunity in the short term to improve access to high quality local foods for insecure populations, and in the long term to challenge the systemic income and race-based inequalities that increasingly define the modern food system and are the result of prioritizing market-based reforms that re-create inequality at the local and regional levels. We propose alternatives to these approaches that emphasize the ability to ensure adequate food access for vulnerable populations, as well as the right to define, structure, and control how food is produced beyond food consumerism (i.e., voting with our dollars), but through efforts increasingly aligned with a food sovereignty agenda. Keywords emergency food, food justice, food sovereignty, rural and urban Introduction The rural private emergency food system is an overlooked area of research. The popularity of local food has increased in urban and rural areas alike, yet despite the social and economic capital driving this innovative food movement, foodinsecure populations remain ignored to a large degree. We know that the rural food environment is substantively different than the urban food environment (Sharkey, 2009). People in rural areas generally have less money to spend on food and they live further from markets where local food producers sell their products (Morton & Blanchard, 2007). Producers are predominantly located in rural areas where land and water resources are abundant, yet the most profitable markets for their products more often than not are located in urban centers where they can more easily access a concentrated population center with greater financial capital. These urban-rural distinctions can be made about multiple aspects of food systems research. For instance, early applications of the food desert concept (and the corresponding efforts to identify them) were overwhelmingly situated in urban places. Today, there is recognition that there is not a single food desert definition that can be universally applied. Researchers as well as government authorities have recognized this; for instance, the United States Department of Agriculture (USDA) has adopted different criteria for urban and rural food deserts. In examinations of local food, some have identified key urban-rural distinctions. For example, McEntee's (2010) contemporary and traditional conceptualization has been used to distinguish between a broad base of activities that are local in terms of geographical scale, but potentially exclusive in terms of their social identity and obstacles to adequate access. Access in this sense is not represented by a Cartesian notion of physical proximity, however; it is also indicative of access barriers in terms of financial ability as well as structural and historical (e.g., institutional racism) processes that privilege some, but harm others (McEntee 2011a).1 These concerns are increasingly recognized as part of growing food justice and food sovereignty agendas. The private emergency food system (PEFS) is a national network of food banks, food pantries, soup kitchens, and shelters that operate largely to redistribute food donated by individuals, businesses, and the state. This is a tremendously important system that serves both urban and rural food-insecure populations. Based on a review of this system's functionality, urban-based critiques of this system, and findings from an exploratory qualitative study, we propose that there are key distinctions between the urban and rural PEFSs that have been overlooked (in the same manner that urban and rural local food systems are conflated). The PEFS serves as a safety net for many, yet it struggles financially and lacks access to the high-quality foods (e.g., fresh produce and meat) that clients of this system often prefer. In this article we present emergent opportunities to develop the collaborative capacity between the PEFS and the rural local food system in ways that address the needs of the PEFS and utilize the assets of the burgeoning local food movement. Furthermore, we explain how these synergies potentially contribute to food justice by providing high-quality food to low-income populations. We begin the article with a review of pertinent literatures. This is followed by a depiction of the PEFS, summary of existent critiques, and presentation of our data. We propose that livelihood strategies related to traditional localism (McEntee, 2010) contribute to food justice and food sovereignty agendas by focusing on the natural and social assets of rural communities. We conclude with a discussion of the possibilities for not only remediating the PEFS, but challenging the corporate food regime that currently institutionalizes it. Local Foods, Food Justice, and Food Sovereignty Consumer confidence in the conventional food sector has decreased as a result of food scares (Morgan, Marsden, & Murdoch, 2006), with consumers feeling alienated from modern-day food production (Sims, 2009). From these consumerbased concerns over food safety and a general alienation from modern-day food production, alternative food initiatives and movements have surfaced (including local food initiatives). Feenstra (1997) made the case for local foods as an economically viable alternative to the global industrial system by providing specific steps to be taken by citizens to facilitate the transition between the local and the global; it is these forces that have become the focus of food provisioning studies (Winter, 2003). These efforts include more sustainable farming methods, fair trade, and food and farming education, among others; these have been reviewed extensively elsewhere, such as by Kloppenburg, Lezberg, De Master, Stevenson, and Hendrickson (2000) and Allen, FitzSimmons, Goodman, and Warner (2003). Essentially, all are categorized by a desire to create socially just, economically viable, and environmentally sustainable food systems (Allen et al., 2003) and the majority are now collectively referred to as the dominant food movement narrative (Alkon & Agyeman, 2011). It is from this narrative that the local food movement emerges. Food justice efforts have successfully utilized food localization efforts to improve food access opportunities for low-income and minority communities. These efforts typically occur in urban areas and target low-income minority populations (Alkon & Norgaard, 2009; Gottlieb and Joshi 2010; Wekerle, 2004; Welsh & MacRae, 1998). The concept of food justice supports the notion that people should not be viewed as consumers, but as citizens (Levkoe, 2006); by linking low-income and minority populations with alternative modes of food production and consumption, advocates prioritize human well-being above profit and alongside democratic and social justice values (Welsh & MacRae, 1998). This represents "more than a name change" departure from conventional food security concerns; it is rather a systemic transformation that alters people's involvement in food production and consumption (Wekerle, 2004, p. 379). Increasingly substantiated by racial and income-based exclusion, food justice operates to prioritize just production, distribution, and access to food within the communities being impacted. This is the focus of the food justice movement, though environmental and economic benefits often result from these efforts as well. A recently published volume edited by Alkon and Agyeman (2011) unpacks various forms of food justice, ranging from issues of production (e.g., farmworker rights) to distribution, consumption, and access. In this article we are concerned with the consumption element of the food chain; food justice efforts in this realm often take the form of alternative food initiatives that create new market-based or charity-based solutions to inadequate food access (e.g., farm-to-school programming that link schools and local farmers, slidingscale payment plans for low-income consumers at farmers' markets that are subsidized by wealthier patrons, or agricultural gleaning programs) that stress social equity and solutions that are implemented by and for the people impacted by inadequate access to food. This latter element is a definitive characteristic of food justice initiatives. Most recently, Alkon and Mares (2012) situated food justice in relation to food sovereignty, finding that although food justice and community food security frameworks often challenge conventional agricultural and food marketing systems, the food sovereignty framework is the only one to explicitly underscore "direct opposition to the corporate food regime" (p. 348). This is because both contemporary food justice and (community) food security frameworks often operate within traditional markets that are agents of the industrial agricultural system representative of a neoliberal political economy. This marks a departure between food justice and food sovereignty; La Via Campesina, a major proponent of food sovereignty, defines the concept as: the right of peoples to healthy and culturally appropriate food produced through sustainable methods and their right to define their own food and agriculture systems. It develops a model of small scale sustainable production benefiting communities and their environment. It puts the aspirations, needs and livelihoods of those who produce, distribute and consume food at the heart of food systems and policies rather than the demands of markets and corporations. (La Via Campesina, 2011, para. 2) Whereas food justice often works to create solutions in sync with market structures by filling the gaps in government services, food sovereignty focuses on dismantling the corporate food regime. History and Structure of the PEFS An area of the food system where food justice advocates have increasingly engaged in an urban setting is the PEFS. Operating on a charity basis, emergency food assistance provides food to individuals whose earnings, assets, and social insurance options have not met their needs (Wu & Eamon, 2007). Public government-run assistance programs include welfare, the Supplemental Nutrition Assistance Program (SNAP), Medicaid, and subsidized housing. Private emergency food assistance is provided by nonprofit organizations and includes soup kitchens, food pantries, food banks, food rescue operations (Poppendieck, 1998), and "emergency shelters serving short-term residents" (emphasis added) (Feeding America, 2010a, p. 1). Largely in reaction to dissatisfaction with the federal food stamp program, Congress passed the Omnibus Budget Reconciliation Act in 1982. This act allowed federally owned surplus commodity food to be distributed by the government for free to needy populations. Prior to its passage, the vast majority of food assistance in the U.S. was governmentally provided through the food stamp program (now the Supplemental Nutrition Assistance Program [SNAP]) and the majority of food that food pantries received came from individuals and businesses. The act's success was followed by the Temporary Emergency Food Assistance Act (TEFAP) in 1983, which began the process of routinely distributing excess commodities through private emergency food programs, such as food banks and food pantries (Daponte & Bade, 2006). Food pantries flourished as a result of commoditysourcing, since they now began receiving a reliable stream of food. Businesses that previously did not want to be involved in emergency food provisioning activities could now dispose of unwanted inventory for a much cheaper rate by giving it away (Daponte & Bade, 2006) (see figure 1). In fiscal year 2009, Congress appropriated USD299.5 million for the program, made up of USD250 million for food purchases and USD49.5 million for administrative support (USDA FNS, 2010). In the U.S., companies defined as C corporations by tax code (the majority of U.S. companies) can collect an enhanced tax deduction for donating surplus property, including food. Thus when food businesses donate food to a charity, including food banks and pantries, the businesses can take a deduction equal to 50 percent of the donated food's appreciated value. In addition, the Bill Emerson Good Samaritan Food Donation Act of 1996 provides safeguards for entities donating food and groceries to charitable organizations by minimizing the risk of legal action against donors. Companies are not required to publicly disclose deductions for food donations, though in 2001 corporations wrote offUSD10.7 billion in deductions (Alexander, 2003). Feeding America received USD663,603,071 in charitable donations in 2006. In a 2003 Chicago Tribune article, Delroy Alexander described how America's Second Harvest received USD450 million in donated provisions in 2001, USD210 million of which came from just 10 major food companies, such as Kraft, Coca-Cola, General Mills, ConAgra Foods, Pfizer, and Tropicana (Alexander, 2003). The top five donors each gave more than USD20 million in food, with the top contributor at USD38 million. Current figures are unavailable, though many companies proudly display pounds of food donated on their websites. For instance, Walmart's website states: From November 2008 to November 2009, the Walmart stores and Sam's Club locations have already donated more than 90 million pounds [41,000,000 kg] of food....By giving nutritious produce, meat, and other groceries, we've become Feeding America's largest food donor. (Walmart, 2010) This arrangement allows for unwanted food (food that would otherwise be considered waste) to be utilized; it acts as a vent for unwanted food, allowing large corporate entities to dump surplus product of questionable nutritional quality upon the PEFS. Simultaneously, these corporations are receiving tax breaks and benefiting from policies that minimize their legal risk. Approximately 80 percent of food banks belong to Feeding America, a member organization that acts as an advocate and mediator in soliciting food from major food companies and bulk emergency food providers. This network has 205 food bank members that distribute food and grocery products to charitable organizations. Nationwide, more than 37 million people accessed Feeding America's private food assistance network in 2009 (up 46 percent from 2005), while 127,200 accessed it in New Hampshire (Feeding America, 2010b). Critiques of the PEFS Critical assessments of the PEFS range from those focused on political-economic relations to on-theground implementation of this redistributive system. In the following section we have grouped these appraisals into four main points. First, the PEFS is largely "emergency" in name only. Second, distribution of food in the PEFS is largely unregulated. Third, nutritional content of donated items is frequently overlooked for the sake of its quantity. Fourth, because of their limited budget and foodstorage capacity, the PEFS requests nonperishable, and resultantly, low-nutrition donations. Related to this point, perpetuation of the PEFS as it currently operates supports a short-term food strategy that supports immediate caloric need while sacrificing long-term health (and ignoring its associated costs). A prominent critique of the PEFS is that it is "emergency" in name only, and examples highlight the emergency programmatic emphasis of programs even though their services appear to be operating in a nonemergency manner. The U.S. government describes TEFAP as a program that "helps supplement the diets of low-income needy persons...by providing them with emergency food" (USDA FNS, 2010). Feeding America, "the nation's largest organization of emergency food providers," describes food pantries as "distributing food on a short-term or emergency basis" (the NHFB shares this definition) (Feeding America, 2010a, p. 13). According to Feeding America's Hunger in America 2010 report, approximately 79.2 percent of clients interviewed reported that they had used a pantry in the past year, indicating that they were not new clients. Multiple researchers have observed that many food pantries are being used on a regular, long-term basis (Beggs, 2006; Bhattarai, Duffy, & Raymond, 2005; Daponte, Lewis, Sanders, & Taylor, 1998; Hilton, 1993; Molnar, Duffy, Claxton, & Conner, 2001; Mosley & Tiehen, 2004; Tarasuk & Eakin, 2005; Warshawsky, 2010). Along these lines, others have cited how the PEFS is unregulated to its detriment; for instance, many private donations do not have any federal or state laws regulating their distribution (Bhattarai et al., 2005). The unregulated nature of any charity brings both benefits and burdens, and one benefit to the PEFS has been the ability to utilize the efforts of a large volunteer base. However, it has been proposed that pantries that operate with a largely volunteer workforce employ subjective eligibility criteria and a "they should be satisfied with whatever they get" mindset on behalf of workers (volunteers as well as paid staff) (Tarasuk & Eakin, 2005, p. 182). Food pantry clients may have limited rights and entitlement to the food being distributed, "further reinforcing that people are unable to provide for themselves" (Molnar et al., 2001, p. 189) in this redistributive system. In fact, it has been shown that workers "routinely eschew the aesthetic values that dominate our retail system" where "distribution of visibly substandard or otherwise undesirable products is achieved because clients have few if any rights" and "are in desperate need of food" (Tarasuk & Eakin, 2005, p. 184). The belief of some workers that clients should be satisfied with whatever items they receive underlies the non-nutritional focus threaded throughout the private emergency food system. This is especially evident from the supply side. Government commodities serve as a major source of food for the PEFS. Commodity foods are provided to food banks, directly to independent agencies, and to Feeding America (Feeding America, 2012c). The original intents of this commodity program were to distribute surplus agricultural commodities and reduce federal food inventories and storage costs, while simultaneously helping food-insecure populations. In 1988, however, much of the federal government's surplus had been exhausted, and as a result the Hunger Prevention Act of 1988 appropriated funds for the purchase of commodities for TEFAP (USDA FNS, 2010). The PEFS's other major contributor, private corporations, do not explicitly concentrate on the nutritional content of their donations. Corporations benefit from considerable tax incentives along with liability protection; they can donate food that would otherwise be wasted, forgoing dumping costs while engaging in what many of these entities now call "corporate social responsibility." For instance, pounds of donated food are showcased and used as progress markers to show how successfully hunger is being combated. Feeding America states that it distributes 3 billion pounds (1.4 billion kg) of food every year (Feeding America, 2012a). Clicking on a few of Feeding America's "Leadership Partners" on its homepage website (Feeding America, 2012b) yields similar language. For instance, ConAgra states that, "In the last dozen years, ConAgra Foods has provided more than 166 million pounds of food to families in need" (ConAgra, 2009, para. 5), Food Lion (part of the Delhaize Group) has "donated more than 21 million pounds of food" (Food Lion, 2010), and "just last year, Procter & Gamble contributed nearly 30 million pounds of product" (Procter & Gamble, 2010). These figures provide no indication of nutritional content, although one pound of naturally flavored drink boxes has different nutritional composition than one pound of fresh produce. If success is measured in terms of quantity, then this will be the criterion that drives emergency food provisioning. Charities are easy targets for critique; they often operate on a shoestring, use labor with different levels of knowledge and experience, and much of the time are put in a financially and socially powerless position, at the whims of donors. One result is that nonperishable or lowperishability items are preferred (Tiehen, 2002; Verpy, Smith, & Reicks, 2003); these last longer and do not require refrigeration. Their long shelf life means handling and transport is not timesensitive. These products cost less and are more likely to be donated. Nutrient-poor foods are less healthy overall (Monsivais & Drewnowski, 2007); previous food pantry investigations discovered the poor nutrient composition of donated items, especially in regards to adequate levels of calcium, vitamin A, and vitamin C (Akobundu, Cohen, Laus, Schulte, & Soussloff, 2004; Irwin, Ng, Rush, Nguyen & He, 2007). Donating large amounts is important since donation quantity is prioritized by agency recipients. Rock, McIntyre, and Rondeau (2009) found a misalignment between donor intent and client preference indicative of the "ignorance among food-secure people of what it is like to be food-insecure" (p. 167). Food banks and food pantries are pressured to accept foods on unfair grounds, just as clients are pressured to accept whatever food is handed to them. In at least one other case, food pantry donors "did not consciously consider nutrition when deciding which foods to donate" (Verpy et al., 2003, p.12). A demand-side perspective of private emergency food provisioning reveals somewhat complementary conditions that support the acquisition and distribution of low-quality foods. The longterm health consequences associated with the consumption of low-quality foods can be overlooked to satisfy immediate food needs, thereby reinforcing the value placed on the low-quality supply being donated. While expenses like shelter, heat, and medical expenses are relatively inelastic, food is flexible and can be adjusted based on these demands. On a limited budget, it is often the case that whatever money is leftover is used for food (Furst, Connors, & Bisogni, 1996; McEntee, 2010). As reported by McEntee, a homeless shelter resident commented: It's likes this, your oil's almost out, your electricity's high and they're going to shut it off, what are going to do? Well, we're going to have to cut down on our food budget. Do what you gotta do. . . you can buy your family packs and suck it up and eat ramen noodles. (McEntee, 2010, p. 795) Sometimes these types of food are chosen out of necessity (that is the only type of food offered) and other times it is out of habit (they are used to eating it).2 With the recent recession in the U.S. economy, purchases of cheap, ready-to-eat processed foods have increased. An Associated Press article entitled, "ConAgra Foods 3Q profit rises, maintains outlook" (Associated Press, 2010, para. 1) states: Strong sales of low-priced meals such as Banquet and Chef Boyardee and lower costs pushed ConAgra Foods Inc.'s third-quarter profit up 19 percent. Cheap prepared foods like those that ConAgra offers have appealed to customers during the recession as they look for ways to save money and eat at home more. Methods and Research Setting Approximately 7.7 percent of New Hampshire's population is food-insecure (Nord, Andrews & Carlson, 2008); 8 percent of the state's population lives in poverty, while 9.4 percent of Grafton County's population lives in poverty (U.S. Census Bureau, 2008). Grafton County was selected as the research site based on proximity to researchers as well as the existence of food insecurity. Grafton County (figure 2) has a population of 81,743 and a population density of 47.7 people per square mile (18.4 people per square kilometer) (U.S. Census Bureau, 2008). Unlike the other two primarily rural northern counties of New Hampshire (Carroll and Coos counties), Grafton County contains two universities that serve as educational and cultural centers (Dartmouth University in Hanover and Plymouth State University in Plymouth). Accordingly these areas attract residents with above-average educational attainment and income, thus offering a variegated set of social and economic conditions which are differentiated from the rest of the county. There are 14 registered food pantries in Grafton County (of a total of 165 in New Hampshire) (New Hampshire Food Bank, 2010). In 2012, there were 92 SNAP-authorized stores within the county, marking a 13 percent increase from 2008 (USDA FNS, 2012a). Approximately 16 percent of students were free lunch eligible in 2008 (USDA FNS, 2012b). In terms of local food potential, there were 10 farmers' markets in 2010 (USDA AMS, 2012) with 3.3 percent of farm sales attributable to direct to consumer sales ; U.S. Census of Agriculture, 2012). A purposive sampling method (Light, Singer, & Willett, 1990) was used to identify respondents (N = 16) who work regularly in Grafton County's PEFS. This included state employees, although the majority were workers and volunteers at food banks, soup kitchens, food pantries, and homeless shelters. These respondents were selected based on their above-average knowledge about hunger, food insecurity, and private emergency food provisioning in Grafton County (beyond their personal experience). Although some questions were specific to the respondent's area of expertise, the same general open-ended question template was used to facilitate informative discussion on topics related to food access, such as affordability, nutrition, and food provisioning (see table 1). The one-on-one semistructured interviews (Morgan & Krueger, 1998) with this group of respondents lasted between 60 and 90 minutes and took place in an office setting, community center, or over the phone (when in-person meetings were difficult to arrange). All interviews were recorded, transcribed, and coded. Participant observation (Flowerdew & Martin, 1997) was conducted at a Plymouth-area soup kitchen that served weekly hot meals for free to attendees. Data from interviews as well as field notes were coded and analyzed using NVivo, qualitative analysis software ( QSR International, 2010). After data was cleaned, data was examined as a whole to gain a general sense of overall meaning and depth. Open coding was undertaken, where material was organized into groups or segments of related information (Rossman & Rallis, 1998). We developed a qualitative codebook for efficient and consistent code assignment. Codes were examined, as well as the overall corpus of information. We identified underlying themes based primarily on respondent narratives. Over time, themes and trends emerged. Overlaps and differences between themes were identified, thus allowing their properties to be refined, ultimately resulting in progressively clear theme categories. Following theme assessment, interconnections and relations between themes were identified through concept mapping and triangulation (Fielding & Fielding, 1986). The authors conducted all interviews and observation, processed all data, and conducted all analysis. Institutional Review Board approval was obtained and all standard research protocols used. Findings from Grafton County Some of the data emerging out of the Grafton County case echoes previous observations about the PEFS. The preliminary data we present in this article is the product of field work, policy evaluation, and literature review. We do not claim that these findings are externally generalizable, although we do see similarities between our observations and those of other researchers, indicating that our data may be indicative of trends elsewhere, especially in rural areas of the northeastern United States where similar demographic and cultural traits exist. In this way, we also see potential in terms of research trajectories and policy reforms for those looking to build capacity between the PEFS and the local food system. Reliance upon Volunteers In relation to the existing criticisms that the PEFS is actually serving a long-term and sustained need and not a short-term or emergency one, many food pantry workers indicated that longterm usage by clients was common. For instance, one pantry worker explained that "most of the people that come in here are...I don't know if I would say chronic, but regulars" (0607).3 In these pantries, representatives talked about getting to know clients over the course of months and years of use; some clients stay and talk with pantry workers for emotional support during food pickups. This long-term usage has been critiqued and connected to the fact that the PEFS is so heavily reliant upon volunteer labor that resultantly there are opportunities for inconsistencies to develop (Lipsky, 1985; Molnar et al., 2001). Ad hoc administration of private emergency food distribution has consequences, such as inconsistent eligibility requirements and quality control (Daponte & Bade, 2006). In Grafton County pantries, eligibility was determined through a combination of criteria, such as pantry worker's personal judgment and preset income criteria. In one large pantry, more refined conditions were followed by staffand volunteers. In this pantry, if it was a client's first visit, then they were allowed to get food no matter what. However, in order to get food on subsequent visits they would need to bring proof of income (their income had to be below a certain amount based on number of household members). The director of this pantry explained, "the only time I turn them away is if they're using the other food pantries....Most of the time they trip themselves up" (0505). When asked about the consequences of using more than one pantry, the same respondent said, "I turn them offfor a whole year....To me, that's stealing food because that's government food involved in both places" (0505). This was not a set rule or policy of the pantry, but a guideline created by the director. Another worker explained that clients needed to fill out a TEFAP form (which determines eligibility under the rubrics of "Program" (already receiving a form of public assistance) and "Income" (one-person weekly income at or below USD370)), but that "it [the form] doesn't turn anybody away" (1215). The downside of a more subjective, informal system is that pantries can be run in a potentially inequitable manner (Daponte & Bade, 2006). In addition, a client who offended a staffmember or volunteer in the past will not be safeguarded against as they would be in a government-run system. A pantry director from a small church-run pantry was asked about assistance eligibility and replied that: We don't ask a lot of questions...We don't take any financial information and you don't need to qualify. I just tell people, "if you need it, you can use it."...You can tell by looking at them, you know? The car they drive, their clothes, you could tell they're not living high offthe hog, so to speak. (0607, emphasis added) In New Hampshire, 92 percent of food pantries and 100 percent of soup kitchens use volunteer labor, while 64 percent of pantries and 46 percent of soup kitchens rely completely on volunteer labor (Feeding America, 2010b). Volunteers partnered with pantry staffto perform tasks. Food has to be inspected, sorted, organized, and in some cases cleaned before it is handed out; how these tasks are carried out varies by pantry. In all pantries visited as part of this research, clients waited in line with other recipients (visible to each other) where nonpantry visitors to the agency could see them openly. In one venue, while pantry clients picked their food from a closet in a church, people working to set up a church dinner worked in the same room; these individuals and the pantry clients were visible openly to each other. These patterns show that by engaging in this private form of food assistance, clients give up any right to confidentiality they may be afforded through other forms of assistance, such as those offered by federal or state forms of food assistance. Another consequence of reliance on volunteer labor is that food standards are frequently disregarded. A set of pantry workers explained how they went to great lengths to utilize some squash donated from a nearby farm: We discovered a couple years ago that he can't keep it here [the pantry] because it will spoil...and then I said I'll take it, I got a place....So now I've got squashes and I keep an eye on them to make sure they aren't spoiling....So I have a room downstairs [in her house] that has no windows and it's about 55 [degrees]. And I put them down in the basement and then I bring them up into the garage and they're stored in the garage where it doesn't freeze. (0506) Pantry and food bank workers often clean and repackage food that is inconveniently packaged (e.g., in bulk) or has been broken open.4 These findings not only underscore the role of volunteer subjectivity, but they more broadly illustrate the negative externalities that can emerge in this unregulated system. Food Preferences: "Change Your Taste Buds" Depending on the agency, food preferences of clients may have minimal influence over foods received. Nutritional, cultural, or taste preferences can be disregarded, while pantry staffbeliefs dictate allotments. A volunteer who worked at a pantry and soup kitchen and also served on the board of the pantry said, "the younger ones [clients] are very, very fussy, they are turning their nose up at different things....Whereas if you're hungry, you accept and you learn to do it and change your taste buds" (0506, emphasis added). In the same interview as the one quoted above, this respondent reflected that "we're a spoiled society" and "there's a lot of honest need, but I think there's also those that are needy who don't help themselves" (0506). This respondent seems to believe that clients should be thankful for whatever they get, no matter what, since it is better than nothing. This is similar in a sense to how pantries are pressured into being thankful for all donations out of fear that refusal of items would jeopardize future giving (for an example, see Winne (2005)). Believing that clients should "change their taste buds" to accommodate the food available at the pantry food represents a misalignment between clients' nutritional well-being and the pantry objective of efficiently distributing all donated food. This respondent held a position of power within the pantry and was able to make managerial-level decisions. Following through on her sentiments means that clients should adjust their personal taste preferences to whatever donors decide to donate. Client preferences are interpreted by pantry staffin number of ways; consider the experience of this employee who worked at a smaller pantry in a northern part of the county: I had a guy call me today and wanted me to take his name offthe list here and I said "OK." I said "did you get a job?" I know he was looking for a job, "no, but I can't eat that crap." He said, "I like to eat organic now, natural food." He said, "I can't eat this stuff, processed kind of food." He said, "not that I don't appreciate what you're doing for me, but I just can't eat that kind of food." I said, "well, get a job" or that's what I felt like saying....Do you know how much that stuffcosts? We're not the end all, we're just supplemental here, we can't provide food for you for the week. I mean its just not going to happen. (0607) This employee appeared offended by this man's decision to stop accessing the pantry. By participating in the PEFS, these individuals relinquish rights and standards they may have in the public retail sphere (i.e., where federally and state enforced food safety regulations are upheld) and as a result are forced to gamble on the whims of the largely unregulated PEFS . This removal of food rights places food-insecure individuals in an even more food-precarious state, disempowering them beyond that which is accomplished through retail markets. One pantry worker explained that when individuals donate food, "lots of times it's ramen noodles because you can donate a lot at a low price" (0709). Food-pantry representatives working with a food-insecure population indicated that this group prefers quick and easy meals in the form of processed products, and also lacks adequate knowledge about nutrition and cooking to make informed food selections. Simultaneously, those accessing pantries revealed that food was a flexible budget item that could be adjusted according to the demands of other expenses. This often leads to trading down of items purchased - from more expensive, healthy items to cheaper, less healthy items. Food pantry representatives commented on how clients, especially young ones, prefer quick and easy products because "it's so much easier to open a can...things that are quick" (0506). Another pantry worker commented that "it's great when they say they cook....It just makes it so much easier to give them bags of nutritional food, but sometimes they'll just want the canned spaghetti, macaroni and cheese, hot dogs...foods that are easy to prepare for families," which she acknowledged as "a problem" (0709). Efforts to reform these eating habits were evident; one pantry worker reflected on how they had tried to switch from white to wheat bread, but found that "the wheat bread was not a hit" (1215). A nutrition professional working at a nonprofit described an attempt to change her clients' eating habits. She explained that her efforts were aimed at making people more nutritionally informed by showing them that eating healthier can be more affordable: We will do a comparison and we will make a meal with Hamburger Helper and we'll make basically homemade Hamburger Helper....I'll do a comparison of what Hamburger Helper costs and what it costs to make it from scratch. It's always of course cheaper to make it from scratch and then we do a taste test. And unfortunately many of the people have grown up with Hamburger Helper so that's what they like....They don't see the difference; how salty and awful it tastes....We'll do a whole cost analysis and they'll see it's about 59 cents a serving if you make it from scratch compared to about 79 cents a serving for Hamburger Helper. (1013) Another pantry worker explained: I think it's pricing, but then we have people, you know I believe it comes from how you grew up. You know, a lot of people shop the way their moms or dads shopped. And some people were just brought up on frozen boxed food and not cooked homemade meals and so that's all they know how to purchase. (0303) This may explain why pantries experience a demand for these easy-to-cook processed foods. While some pantries might push more nutritional options, others send contradictory nutritional messages. Not far from where the abovementioned nutritional professional worked, another pantry worker at the same agency remarked that "the stuffthat's easy for us to get is pasta, canned stuff, pasta mixes, and it's not highly nutritional....Tuna or some kind of a tinned meat, you know, with a Tuna Helper, that's the kind of stuffwe get here because we don't have any way to give them fresh meat" (0607). The food being donated is free for the pantry and free for the clients, made possible through private, often corporate donors. This represents a seemingly collaborative alignment between the need to dispose of unwanted food on behalf of corporate donors and the need for foodinsecure clients to consume food, yet this arrangement is rooted in a short-term outlook and power imbalance where corporate food entities are able to dump unwanted food for free upon a foodinsecure population, thereby realizing short-term profit gains (for the business) at the cost of longterm health of food-insecure individuals and its effect on governments. Assessing Collaborative Potential The rural PEFS appears to be similar to the urban PEFS in a number of ways. It is heavily reliant upon volunteer labor and it serves a significant proportion of the population, often on a regular basis. In the rural context there is a dispersed population. While centralized population centers like cities provide efficient and short-distance transportation networks, rural networks are decentralized with people living in remote areas, often requiring automobile access. This has a few practical consequences. A dispersed population also means that community food-growing opportunities like neighborhood gardens are more difficult to organize and implement when compared to a city where a group of neighbors can have a small vegetable plot within walking distance. Contrastingly, in many rural places the transportation cost of getting to a community space where a garden may be located represents another financial and logistical barrier. Cities are also places where people can more easily congregate to meet and organize reactive and proactive responses to inadequate food access (for example, to grow a neighborhood garden in response to being located in a "food desert"). In urban areas for instance, these have manifested in food justice efforts. In rural areas, the PEFS is the chief response to hunger and food insecurity (in addition to federal and state mandated programs). However, the rural PEFS operates on a smaller scale with fewer numbers of people accessing it and a high degree of malleability. As described earlier in this essay, this informality has been criticized; however, this ability to adapt means that individuals who operate PEFS entities (like food pantries) can take advantage of opportunities without having to obtain approval from higher levels of bureaucracy. In addition, the rural PEFS is often located where the land, soil, water, and air resource base for growing food is abundant. In contrast to the literature that supports the claims that low-income populations prefer processed foods (Drewnowski & Specter, 2004), data from the Grafton County case shows that in the pantries that were able to obtain small amounts of fresh, perishable foods (meats and fresh fruits and vegetables), these quickly became the most popular items. As one pantry worker explained: Most people know that an apple is healthier than a hot dog, but those [hot dogs] are way cheaper, you know, not that they're the same in any way....Here [at the food pantry] they would go for the things that they don't normally get their hands on, which is why those dairy products go fast and those veggies go fast. But I think in general when they are shopping they go for the cheapest, easiest thing to get through to the next week. (1215) In another study of Grafton County, a food pantry employee described how a local hunter donated moose meat: Interviewer: What are the most popular items that you have here in the pantry? Respondent 1: Meat. It's the most expensive... Respondent 2: Oh, was it last year we got the moose meat? We got 500 pounds [230 kg]. And we're thinking, what are we gonna do with all this moose meat? And it flew out of here. I mean, people were calling us and asking us for some. (McEntee, 2011b, p. 251) A key question emerging from this research is, "how do we harness the assets of both the PEFS and local food system to better serve the needs of food-insecure populations?" There is a demand for locally produced produce and meat on behalf of food-insecure individuals (as others have shown; see Hinrichs and Kremer (2002)). The desires of low-income consumers to eat fresh meat and produce (which often is locally produced) as well as to participate in some local food production activities (whether it be hunting or growing vegetables) have been overlooked by researchers. People accessing the PEFS in rural areas are accessing pantries, but also growing their food because it is an affordable way to obtain high-quality food they may otherwise not be able to afford (McEntee, 2011b). Based on the information provided in this article, potential synergies between the PEFS and the local food system in the rural context exist. Specifically, a traditional localism engages "participants through non-capitalist, decommodified means that are affordable and accessible" where "food is grown/raised/hunted, not with the intention to gain profit, but to obtain fresh and affordable food" (McEntee, 2011, pp. 254-255). Traditional localism allows for local food to become an asset for many food-insecure and poor communities that are focusing on the need to address inadequate food access. How could the rural PEFS source more food locally, thereby strengthening the local economy? How could private emergency food entities like food pantries and local food advocates promote food-growing, food-raising, and hunting activities as a means to increase grassroots, local, and affordable access to food? Like many places throughout the U.S., Grafton County is home to small-scale local agriculture operations supported by an enthusiastic public and sympathetic state. Simultaneously, there is the presence of food insecurity and a PEFS seeking to remediate this persistent problem. The actual structure of the PEFS could be thoroughly assessed (beyond the borders of Grafton County). If warranted, this system could be redesigned to prioritize privacy and formalize procedures in terms of ensuring that client food choices are respected. A crucial next step in reforming this system to benefit lowincome and minority clients is to emphasize the ability to grow, raise, and hunt food for their own needs5 through the traditional local concept. This would represent a transformation in which these activities could not only be supported by the PEFS, but also draw upon the social capital of communities in the form of memories and practices of rural people from the near past, all while reducing reliance upon corporate waste. If traditional local efforts were organized on a cooperative model, based on community need and not only the needs of individuals, it would benefit all those participating, drawing on collective community resources, such as food-growing knowledges and skills, access to land, and tools, thereby enhancing the range of rural livelihood strategies. In this sense, these activities are receptive to racial and economic diversity as well as alliance-formation across social groups and movements, all of which are characteristic of the food sovereignty movement (Holt- Giménez & Wang, 2011). In moving forward additional research is needed. While our findings highlight potential shortcomings, there is a lack of data exploring the rural PEFS experience. Specifically, from the demand side, we need more data about the users of this system, specifically in regard to their satisfaction with food being given to them. Are they happy with it? Do they want something different that is not available? Do they lack the ability to cook certain foods being handed out by the pantry? Feeding America's Hunger in America survey asks about client satisfaction; in its 2010 report, only 62.7 percent of surveyed clients were "very satisfied" with the overall quality of the food provided.6 Additionally, the fact that this survey is administered by the same personnel who are distributing food donations raises methodological biases. More needs to be discovered about why such a large proportion of users is not "very satisfied." From the supply side, we need to know more about food being distributed and its nutritional value. Currently, the food being donated and distributed is unregulated to a large degree, especially in rural pantries. Also on the supply side, the source of food provided to Feeding America as well as individual state food banks and food pantries needs to be inventoried with more information beyond just its weight. Knowing the quantity of specific donated products as well as the financial benefit (in terms of tax write-offs) afforded to donors would add transparency. Conclusion: Neoliberal Considerations and Future Directions The findings we have presented in this article are intended to reveal important policy questions about the PEFS and local food movement; we do acknowledge, however, that it also has raised some important questions. In summary, we see opportunities to move forward in enacting a food sovereignty agenda with both local and global scales in mind. First, value-added, market-based local solutions used to address the inadequacies of the current food system are immediately beneficial. However, these should not be accepted as the endall solution. Looking beyond them to determine what else can be accomplished to change the structure of the food system to shiftpower away from oligarchic food structures of the corporate food regime to food citizens, not only food consumers, would result in systemic change. A key consideration in realizing any reform in the PEFS, and simultaneously challenging and transforming the unsustainable global food regime, is recognizing the neoliberal paradigm in which government and economic structures exist. Neoliberalism can be defined as a political philosophy that promotes market-based rather than state-based solutions to social problems, while masking social problems as personal deficiencies. The PEFS is essentially acting as a vent for unwanted food in this system that also provides a financial benefit to the governing food entities (i.e., food businesses). Too often alternatives are hailed as opposing the profit-driven industrial food system simply because they are geographically localized; in reality, they may re-create the classist and racist structures that permeate the larger global system.7 The PEFS is an embedded neoliberal response to food insecurity; while public-assistance enrollment is on the rise, so is participation in the PEFS. This is a shiftin responsibility in who is providing assistance to food-insecure populations from the government to the private sector. In this sense it is a market-based approach to addressing food insecurity (i.e., by dumping food on the private charity sector, market retailers cut their own waste disposal costs), and the result is continual scarcity and the establishment of a system that reinforces the idea that healthy food is a privilege, only accessible to those with adequate financial and social capital. Along these same lines, a form of food localism exists that is arguably detrimental to those without financial and social capital; these efforts have and continue to frame food access solely as an issue of personal responsibility related to economic status and nutritional knowledge (a narrative thoroughly discussed by Guthman (2007, 2008)). This prioritizes market-based solutions to developing local food systems as well as universal forms of food education that emphasize individual health. As Alkon and Mares (2012) explain, Neoliberalism creates subjectivities privileging not only the primacy of the market, but individual responsibility for our own wellbeing. Within U.S. food movements, this refers to an emphasis on citizen empowerment, which, while of course beneficial in many ways, reinforces the notion that individuals and community groups are responsible for addressing problems that were not of their own making. Many U.S. community food security and food justice organizations focus on developing support for local food entrepreneurs, positing such enterprises as key to the creation of a more sustainable and just food system. The belief that the market can address social problems is a key aspect of neoliberal subjectivities. (p. 349) Though elements of both the PEFS and the local food system have arguably been folded into neoliberalization processes through market-based mechanisms, incremental steps to change these dynamics are possible. Reframing issues of food accessibility (including food insecurity, hunger, food deserts, etc.) as issues of food justice moves us beyond an absolute spatial understanding of food issues. For instance, when we only look at physical access to food, we often disregard the more important considerations of class, race, gender (see Alkon and Agyeman, 2011), and sexual orientation that define a person's present position (and over which they often have no control) and which dictate how they engage with the food system. These considerations are present in current food-justice efforts, which seek to ensure that communities have control over the food grown, sold, and consumed there. Rural food justice has been defined using the traditional localism concept: Traditional localism in rural areas engages participants through non-capitalist, decommodified means that are affordable and accessible. Food is grown/raised/hunted, not with the intention to gain profit, but to obtain fresh and affordable food. A traditional localism disengages from the profit-driven food system and illustrates grassroots food production where people have direct control over the quality of the food they consume - a principal goal of food justice. (McEntee, 2011b, pp. 254-255) Utilizing this rural form of food justice involves more than promoting individual food acquiring techniques; it involves developing organizational and institutional strategies that improve the quality of food available to PEFS entities. This is currently accomplished by some, such as when pantries obtain fresh produce through farmer donations or when a food bank develops food-growing capacity. 8 But these types of entities are in the minority. The next stage of realizing food justice, we posit, is to determine how a food sovereignty approach can be utilized in a global North context. Food justice predominantly operates to find solutions within a capitalist framework (and it has been criticized as such) while food sovereignty is explicitly geared toward the dismantling of this system in order to achieve food justice. Regime change and transformation requires more than recognition and control over food-growing resources; it requires alliance and partnership-building between groups to "to address ownership and redistribution over the means of production and reproduction" (Holt- Giménez & Wang, 2011, p.98). Adopted by organizations predominantly located in the global South, food sovereignty is focused on the causes of food system failures and subsequently looks toward "local and international engagement that proposes dismantling the monopoly power of corporations in the food system and redistributing land and the rights to water, seed, and food producing sources" (Holt-Giménez, 2011, p. 324). There is an opportunity for people in the global North not only to learn from the global South food sovereignty movements, but to form connections and alliances between North and South iterations of these movements.9 As discussed above, the dominant food movement narrative is in sync with the economic and development goals of government (e.g., state-sanctioned buy-local campaigns) as well as marketing prerogatives of global food corporations (e.g., "local" being used as marketing label). Building a social movement powerful enough to place meaningful political pressure upon government to support a food system that prioritizes human wellbeing, not profit, is an immediate challenge. Incremental solutions are necessary in order to improve the lives of people now. However, these local solutions, such as innovative farm-to-school programming and other viable models between the local food environment and the PEFS that we have discussed in this article, would be more effective at affecting long-term systemic change if they were coupled with collective approaches to acknowledge and limit the power of the corporate food regime to prevent injustice, while also holding the state accountable for its responsibility to citizens, which it has successfully "relegated to voluntary and/or market-based mechanisms" (Alkon and Mares, 2012, p. 348). Food sovereignty offers more than an oppositional view of neoliberalism, however. The food sovereignty movement advances a model of food citizenship that asserts food as a nutritional and cultural right and the importance of democratic on-the-ground control over one's food. These qualities resonate with food-insecure and disenfranchised communities, urban and rural, in both the global North and South. Sidebar Citation: McEntee, J. C., & Naumova, E. N. (2012). Building capacity between the private emergency food system and the local food movement: Working toward food justice and sovereignty in the global North. Journal of Agriculture, Food Systems, and Community Development, 3(1), 235-253. http://dx.doi.org/10.5304/jafscd.2012.031.012 Copyright © 2012 by New Leaf Associates, Inc. Footnote 1 Cartesian understandings of space utilize a grid-based measurement of physical proximity. These types of proximitybased understandings of food access (i.e., food access is primarily a matter of bringing people physically closer to food retailers, as is promoted by the USDA Food Desert Locator) tend to overlook other nuanced forms of food access based on knowledge, culture, race, and class. 2 The amount of processed food, especially in the form of prepared meals and meals eaten outside the home, is steadily increasing in the United States (Stewart, Blisard, & Jolliffe, 2006). 3 The four-digit number indicates interview location and respondent IDs. 4 A leading antihunger effort in New Hampshire is the New Hampshire Food Bank (NHFB), the state's only food bank and a member of Feeding America. In 2008 the NHFB "distributed over 5 million pounds of donated, surplus food to 386 food pantries, soup kitchens, shelters, day care centers and senior citizen homes" (N.H. Food Bank, 2010). In total N.H. has 441 agencies registered with NHFB that provide food to 71,417 people annually. Grafton County has 18 food pantries, which "distribute non-prepared foods and other grocery products to needy clients, who then prepare and use these items where they live" and where "[F]ood is distributed on a short-term or emergency basis until clients are able to meet their food needs" (N.H. Food Bank, 2010). 5 A noteworthy example of an organization that has begun to accomplish these objectives is The Stop Community Food Centre in Toronto, which was recently described by Levkoe and Wakefield (2012). 6 The remaining categories are: "Somewhat satisfied" (31.3 percent), "Somewhat dissatisfied" (4.8 percent), and "Very dissatisfied" (1.3 percent). 7 For additional discussion of the political economic transition from government to governance, such as the transfer of state functions to nonstate and quasistate entities, see Purcell (2002). 8 An example of this type of effort is that of the Vermont Food Bank, which purchased a farm in 2008 in order to supply the food bank with fresh, high-quality produce as well as to sell the produce. 9 The U.S. Food Sovereignty Alliance has recognized the importance of building these coalitions: "As a US-based alliance of food justice, anti-hunger, labor, environmental, faith-based, and food producer groups, we uphold the right to food as a basic human right and work to connect our local and national struggles to the international movement for food sovereignty" (US Food Sovereignty Alliance, n.d., para. 1). 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Naumova b Department of Civil and Environmental Engineering, Tufts University, and Tufts Initiative for the Forecasting and Modeling of Infectious Diseases Submitted 2 May 2012 / Revised 28 June and 26 July 2012 / Accepted 27 July 2012 / Published online 4 December 2012 aCorresponding author: Jesse C. McEntee, PhD, Managing Partner, Food Systems Research Institute LLC; P.O. Box 1141; Shelburne, Vermont 05482 USA; +1-802-448-2403; www.foodsystemsresearchinstitute.com; jmcentee@foodsri.com b Elena N. Naumova, PhD, Associate Dean for Research, School of Engineering; Professor, Department of Civil and Environmental Engineering, Tufts University; also Tufts Initiative for the Forecasting and Modeling of Infectious Diseases (InForMID) (http://informid.tufts.edu/); elena.naumova@tufts.edu Acknowledgments: The authors are grateful to the Economic and Social Research Council's Centre for Business Relationships, Accountability, Sustainability and Society at CardiffUniversity as well as the Center for Rural Partnerships at Plymouth State University for financial support during this research. The authors are also grateful to the three anonymous reviewers who provided constructive feedback on earlier drafts of this article. Word count: 11055Show lessYou have requested "on-the-fly" machine translation of selected content from our databases. This functionality is provided solely for your convenience and is in no way intended to replace human translation. 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    2. More like this Building capacity between the private emergency food system and the local food movement: Working toward food justice and sovereignty in the global NorthMcEntee, Jesse C; Naumova, Elena N. Journal of Agriculture, Food Systems, and Community Development; Ithaca Vol. 3, Iss. 1,  (Fall 2012): 235-253. 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[[missing key: loadingAnimation]]The full text may take 40-60 seconds to translate; larger documents may take longer.Cancel OverlayEndTurn on search term navigationTurn on search term navigationJump to first hitListen   Headnote Abstract One area of food system research that remains overlooked in terms of making urban-rural distinctions explicit is the private emergency food system of food banks, food pantries, soup kitchens, and emergency shelters that exists throughout the United States. This system is an important one for millions of food-insecure individuals and today serves nearly as many individuals as public food assistance. In this article, we present an exploratory case that presents findings from research looking at the private emergency food system of a rural county in northern New England, U.S. Specifically, we examine the history of this national network to contextualize our findings and then discuss possibilities for collaboration between this private system and the local food movement (on behalf of both the public and the state). These collaborations present an opportunity in the short term to improve access to high quality local foods for insecure populations, and in the long term to challenge the systemic income and race-based inequalities that increasingly define the modern food system and are the result of prioritizing market-based reforms that re-create inequality at the local and regional levels. We propose alternatives to these approaches that emphasize the ability to ensure adequate food access for vulnerable populations, as well as the right to define, structure, and control how food is produced beyond food consumerism (i.e., voting with our dollars), but through efforts increasingly aligned with a food sovereignty agenda. Keywords emergency food, food justice, food sovereignty, rural and urban Introduction The rural private emergency food system is an overlooked area of research. The popularity of local food has increased in urban and rural areas alike, yet despite the social and economic capital driving this innovative food movement, foodinsecure populations remain ignored to a large degree. We know that the rural food environment is substantively different than the urban food environment (Sharkey, 2009). People in rural areas generally have less money to spend on food and they live further from markets where local food producers sell their products (Morton & Blanchard, 2007). Producers are predominantly located in rural areas where land and water resources are abundant, yet the most profitable markets for their products more often than not are located in urban centers where they can more easily access a concentrated population center with greater financial capital. These urban-rural distinctions can be made about multiple aspects of food systems research. For instance, early applications of the food desert concept (and the corresponding efforts to identify them) were overwhelmingly situated in urban places. Today, there is recognition that there is not a single food desert definition that can be universally applied. Researchers as well as government authorities have recognized this; for instance, the United States Department of Agriculture (USDA) has adopted different criteria for urban and rural food deserts. In examinations of local food, some have identified key urban-rural distinctions. For example, McEntee's (2010) contemporary and traditional conceptualization has been used to distinguish between a broad base of activities that are local in terms of geographical scale, but potentially exclusive in terms of their social identity and obstacles to adequate access. Access in this sense is not represented by a Cartesian notion of physical proximity, however; it is also indicative of access barriers in terms of financial ability as well as structural and historical (e.g., institutional racism) processes that privilege some, but harm others (McEntee 2011a).1 These concerns are increasingly recognized as part of growing food justice and food sovereignty agendas. The private emergency food system (PEFS) is a national network of food banks, food pantries, soup kitchens, and shelters that operate largely to redistribute food donated by individuals, businesses, and the state. This is a tremendously important system that serves both urban and rural food-insecure populations. Based on a review of this system's functionality, urban-based critiques of this system, and findings from an exploratory qualitative study, we propose that there are key distinctions between the urban and rural PEFSs that have been overlooked (in the same manner that urban and rural local food systems are conflated). The PEFS serves as a safety net for many, yet it struggles financially and lacks access to the high-quality foods (e.g., fresh produce and meat) that clients of this system often prefer. In this article we present emergent opportunities to develop the collaborative capacity between the PEFS and the rural local food system in ways that address the needs of the PEFS and utilize the assets of the burgeoning local food movement. Furthermore, we explain how these synergies potentially contribute to food justice by providing high-quality food to low-income populations. We begin the article with a review of pertinent literatures. This is followed by a depiction of the PEFS, summary of existent critiques, and presentation of our data. We propose that livelihood strategies related to traditional localism (McEntee, 2010) contribute to food justice and food sovereignty agendas by focusing on the natural and social assets of rural communities. We conclude with a discussion of the possibilities for not only remediating the PEFS, but challenging the corporate food regime that currently institutionalizes it. Local Foods, Food Justice, and Food Sovereignty Consumer confidence in the conventional food sector has decreased as a result of food scares (Morgan, Marsden, & Murdoch, 2006), with consumers feeling alienated from modern-day food production (Sims, 2009). From these consumerbased concerns over food safety and a general alienation from modern-day food production, alternative food initiatives and movements have surfaced (including local food initiatives). Feenstra (1997) made the case for local foods as an economically viable alternative to the global industrial system by providing specific steps to be taken by citizens to facilitate the transition between the local and the global; it is these forces that have become the focus of food provisioning studies (Winter, 2003). These efforts include more sustainable farming methods, fair trade, and food and farming education, among others; these have been reviewed extensively elsewhere, such as by Kloppenburg, Lezberg, De Master, Stevenson, and Hendrickson (2000) and Allen, FitzSimmons, Goodman, and Warner (2003). Essentially, all are categorized by a desire to create socially just, economically viable, and environmentally sustainable food systems (Allen et al., 2003) and the majority are now collectively referred to as the dominant food movement narrative (Alkon & Agyeman, 2011). It is from this narrative that the local food movement emerges. Food justice efforts have successfully utilized food localization efforts to improve food access opportunities for low-income and minority communities. These efforts typically occur in urban areas and target low-income minority populations (Alkon & Norgaard, 2009; Gottlieb and Joshi 2010; Wekerle, 2004; Welsh & MacRae, 1998). The concept of food justice supports the notion that people should not be viewed as consumers, but as citizens (Levkoe, 2006); by linking low-income and minority populations with alternative modes of food production and consumption, advocates prioritize human well-being above profit and alongside democratic and social justice values (Welsh & MacRae, 1998). This represents "more than a name change" departure from conventional food security concerns; it is rather a systemic transformation that alters people's involvement in food production and consumption (Wekerle, 2004, p. 379). Increasingly substantiated by racial and income-based exclusion, food justice operates to prioritize just production, distribution, and access to food within the communities being impacted. This is the focus of the food justice movement, though environmental and economic benefits often result from these efforts as well. A recently published volume edited by Alkon and Agyeman (2011) unpacks various forms of food justice, ranging from issues of production (e.g., farmworker rights) to distribution, consumption, and access. In this article we are concerned with the consumption element of the food chain; food justice efforts in this realm often take the form of alternative food initiatives that create new market-based or charity-based solutions to inadequate food access (e.g., farm-to-school programming that link schools and local farmers, slidingscale payment plans for low-income consumers at farmers' markets that are subsidized by wealthier patrons, or agricultural gleaning programs) that stress social equity and solutions that are implemented by and for the people impacted by inadequate access to food. This latter element is a definitive characteristic of food justice initiatives. Most recently, Alkon and Mares (2012) situated food justice in relation to food sovereignty, finding that although food justice and community food security frameworks often challenge conventional agricultural and food marketing systems, the food sovereignty framework is the only one to explicitly underscore "direct opposition to the corporate food regime" (p. 348). This is because both contemporary food justice and (community) food security frameworks often operate within traditional markets that are agents of the industrial agricultural system representative of a neoliberal political economy. This marks a departure between food justice and food sovereignty; La Via Campesina, a major proponent of food sovereignty, defines the concept as: the right of peoples to healthy and culturally appropriate food produced through sustainable methods and their right to define their own food and agriculture systems. It develops a model of small scale sustainable production benefiting communities and their environment. It puts the aspirations, needs and livelihoods of those who produce, distribute and consume food at the heart of food systems and policies rather than the demands of markets and corporations. (La Via Campesina, 2011, para. 2) Whereas food justice often works to create solutions in sync with market structures by filling the gaps in government services, food sovereignty focuses on dismantling the corporate food regime. History and Structure of the PEFS An area of the food system where food justice advocates have increasingly engaged in an urban setting is the PEFS. Operating on a charity basis, emergency food assistance provides food to individuals whose earnings, assets, and social insurance options have not met their needs (Wu & Eamon, 2007). Public government-run assistance programs include welfare, the Supplemental Nutrition Assistance Program (SNAP), Medicaid, and subsidized housing. Private emergency food assistance is provided by nonprofit organizations and includes soup kitchens, food pantries, food banks, food rescue operations (Poppendieck, 1998), and "emergency shelters serving short-term residents" (emphasis added) (Feeding America, 2010a, p. 1). Largely in reaction to dissatisfaction with the federal food stamp program, Congress passed the Omnibus Budget Reconciliation Act in 1982. This act allowed federally owned surplus commodity food to be distributed by the government for free to needy populations. Prior to its passage, the vast majority of food assistance in the U.S. was governmentally provided through the food stamp program (now the Supplemental Nutrition Assistance Program [SNAP]) and the majority of food that food pantries received came from individuals and businesses. The act's success was followed by the Temporary Emergency Food Assistance Act (TEFAP) in 1983, which began the process of routinely distributing excess commodities through private emergency food programs, such as food banks and food pantries (Daponte & Bade, 2006). Food pantries flourished as a result of commoditysourcing, since they now began receiving a reliable stream of food. Businesses that previously did not want to be involved in emergency food provisioning activities could now dispose of unwanted inventory for a much cheaper rate by giving it away (Daponte & Bade, 2006) (see figure 1). In fiscal year 2009, Congress appropriated USD299.5 million for the program, made up of USD250 million for food purchases and USD49.5 million for administrative support (USDA FNS, 2010). In the U.S., companies defined as C corporations by tax code (the majority of U.S. companies) can collect an enhanced tax deduction for donating surplus property, including food. Thus when food businesses donate food to a charity, including food banks and pantries, the businesses can take a deduction equal to 50 percent of the donated food's appreciated value. In addition, the Bill Emerson Good Samaritan Food Donation Act of 1996 provides safeguards for entities donating food and groceries to charitable organizations by minimizing the risk of legal action against donors. Companies are not required to publicly disclose deductions for food donations, though in 2001 corporations wrote offUSD10.7 billion in deductions (Alexander, 2003). Feeding America received USD663,603,071 in charitable donations in 2006. In a 2003 Chicago Tribune article, Delroy Alexander described how America's Second Harvest received USD450 million in donated provisions in 2001, USD210 million of which came from just 10 major food companies, such as Kraft, Coca-Cola, General Mills, ConAgra Foods, Pfizer, and Tropicana (Alexander, 2003). The top five donors each gave more than USD20 million in food, with the top contributor at USD38 million. Current figures are unavailable, though many companies proudly display pounds of food donated on their websites. For instance, Walmart's website states: From November 2008 to November 2009, the Walmart stores and Sam's Club locations have already donated more than 90 million pounds [41,000,000 kg] of food....By giving nutritious produce, meat, and other groceries, we've become Feeding America's largest food donor. (Walmart, 2010) This arrangement allows for unwanted food (food that would otherwise be considered waste) to be utilized; it acts as a vent for unwanted food, allowing large corporate entities to dump surplus product of questionable nutritional quality upon the PEFS. Simultaneously, these corporations are receiving tax breaks and benefiting from policies that minimize their legal risk. Approximately 80 percent of food banks belong to Feeding America, a member organization that acts as an advocate and mediator in soliciting food from major food companies and bulk emergency food providers. This network has 205 food bank members that distribute food and grocery products to charitable organizations. Nationwide, more than 37 million people accessed Feeding America's private food assistance network in 2009 (up 46 percent from 2005), while 127,200 accessed it in New Hampshire (Feeding America, 2010b). Critiques of the PEFS Critical assessments of the PEFS range from those focused on political-economic relations to on-theground implementation of this redistributive system. In the following section we have grouped these appraisals into four main points. First, the PEFS is largely "emergency" in name only. Second, distribution of food in the PEFS is largely unregulated. Third, nutritional content of donated items is frequently overlooked for the sake of its quantity. Fourth, because of their limited budget and foodstorage capacity, the PEFS requests nonperishable, and resultantly, low-nutrition donations. Related to this point, perpetuation of the PEFS as it currently operates supports a short-term food strategy that supports immediate caloric need while sacrificing long-term health (and ignoring its associated costs). A prominent critique of the PEFS is that it is "emergency" in name only, and examples highlight the emergency programmatic emphasis of programs even though their services appear to be operating in a nonemergency manner. The U.S. government describes TEFAP as a program that "helps supplement the diets of low-income needy persons...by providing them with emergency food" (USDA FNS, 2010). Feeding America, "the nation's largest organization of emergency food providers," describes food pantries as "distributing food on a short-term or emergency basis" (the NHFB shares this definition) (Feeding America, 2010a, p. 13). According to Feeding America's Hunger in America 2010 report, approximately 79.2 percent of clients interviewed reported that they had used a pantry in the past year, indicating that they were not new clients. Multiple researchers have observed that many food pantries are being used on a regular, long-term basis (Beggs, 2006; Bhattarai, Duffy, & Raymond, 2005; Daponte, Lewis, Sanders, & Taylor, 1998; Hilton, 1993; Molnar, Duffy, Claxton, & Conner, 2001; Mosley & Tiehen, 2004; Tarasuk & Eakin, 2005; Warshawsky, 2010). Along these lines, others have cited how the PEFS is unregulated to its detriment; for instance, many private donations do not have any federal or state laws regulating their distribution (Bhattarai et al., 2005). The unregulated nature of any charity brings both benefits and burdens, and one benefit to the PEFS has been the ability to utilize the efforts of a large volunteer base. However, it has been proposed that pantries that operate with a largely volunteer workforce employ subjective eligibility criteria and a "they should be satisfied with whatever they get" mindset on behalf of workers (volunteers as well as paid staff) (Tarasuk & Eakin, 2005, p. 182). Food pantry clients may have limited rights and entitlement to the food being distributed, "further reinforcing that people are unable to provide for themselves" (Molnar et al., 2001, p. 189) in this redistributive system. In fact, it has been shown that workers "routinely eschew the aesthetic values that dominate our retail system" where "distribution of visibly substandard or otherwise undesirable products is achieved because clients have few if any rights" and "are in desperate need of food" (Tarasuk & Eakin, 2005, p. 184). The belief of some workers that clients should be satisfied with whatever items they receive underlies the non-nutritional focus threaded throughout the private emergency food system. This is especially evident from the supply side. Government commodities serve as a major source of food for the PEFS. Commodity foods are provided to food banks, directly to independent agencies, and to Feeding America (Feeding America, 2012c). The original intents of this commodity program were to distribute surplus agricultural commodities and reduce federal food inventories and storage costs, while simultaneously helping food-insecure populations. In 1988, however, much of the federal government's surplus had been exhausted, and as a result the Hunger Prevention Act of 1988 appropriated funds for the purchase of commodities for TEFAP (USDA FNS, 2010). The PEFS's other major contributor, private corporations, do not explicitly concentrate on the nutritional content of their donations. Corporations benefit from considerable tax incentives along with liability protection; they can donate food that would otherwise be wasted, forgoing dumping costs while engaging in what many of these entities now call "corporate social responsibility." For instance, pounds of donated food are showcased and used as progress markers to show how successfully hunger is being combated. Feeding America states that it distributes 3 billion pounds (1.4 billion kg) of food every year (Feeding America, 2012a). Clicking on a few of Feeding America's "Leadership Partners" on its homepage website (Feeding America, 2012b) yields similar language. For instance, ConAgra states that, "In the last dozen years, ConAgra Foods has provided more than 166 million pounds of food to families in need" (ConAgra, 2009, para. 5), Food Lion (part of the Delhaize Group) has "donated more than 21 million pounds of food" (Food Lion, 2010), and "just last year, Procter & Gamble contributed nearly 30 million pounds of product" (Procter & Gamble, 2010). These figures provide no indication of nutritional content, although one pound of naturally flavored drink boxes has different nutritional composition than one pound of fresh produce. If success is measured in terms of quantity, then this will be the criterion that drives emergency food provisioning. Charities are easy targets for critique; they often operate on a shoestring, use labor with different levels of knowledge and experience, and much of the time are put in a financially and socially powerless position, at the whims of donors. One result is that nonperishable or lowperishability items are preferred (Tiehen, 2002; Verpy, Smith, & Reicks, 2003); these last longer and do not require refrigeration. Their long shelf life means handling and transport is not timesensitive. These products cost less and are more likely to be donated. Nutrient-poor foods are less healthy overall (Monsivais & Drewnowski, 2007); previous food pantry investigations discovered the poor nutrient composition of donated items, especially in regards to adequate levels of calcium, vitamin A, and vitamin C (Akobundu, Cohen, Laus, Schulte, & Soussloff, 2004; Irwin, Ng, Rush, Nguyen & He, 2007). Donating large amounts is important since donation quantity is prioritized by agency recipients. Rock, McIntyre, and Rondeau (2009) found a misalignment between donor intent and client preference indicative of the "ignorance among food-secure people of what it is like to be food-insecure" (p. 167). Food banks and food pantries are pressured to accept foods on unfair grounds, just as clients are pressured to accept whatever food is handed to them. In at least one other case, food pantry donors "did not consciously consider nutrition when deciding which foods to donate" (Verpy et al., 2003, p.12). A demand-side perspective of private emergency food provisioning reveals somewhat complementary conditions that support the acquisition and distribution of low-quality foods. The longterm health consequences associated with the consumption of low-quality foods can be overlooked to satisfy immediate food needs, thereby reinforcing the value placed on the low-quality supply being donated. While expenses like shelter, heat, and medical expenses are relatively inelastic, food is flexible and can be adjusted based on these demands. On a limited budget, it is often the case that whatever money is leftover is used for food (Furst, Connors, & Bisogni, 1996; McEntee, 2010). As reported by McEntee, a homeless shelter resident commented: It's likes this, your oil's almost out, your electricity's high and they're going to shut it off, what are going to do? Well, we're going to have to cut down on our food budget. Do what you gotta do. . . you can buy your family packs and suck it up and eat ramen noodles. (McEntee, 2010, p. 795) Sometimes these types of food are chosen out of necessity (that is the only type of food offered) and other times it is out of habit (they are used to eating it).2 With the recent recession in the U.S. economy, purchases of cheap, ready-to-eat processed foods have increased. An Associated Press article entitled, "ConAgra Foods 3Q profit rises, maintains outlook" (Associated Press, 2010, para. 1) states: Strong sales of low-priced meals such as Banquet and Chef Boyardee and lower costs pushed ConAgra Foods Inc.'s third-quarter profit up 19 percent. Cheap prepared foods like those that ConAgra offers have appealed to customers during the recession as they look for ways to save money and eat at home more. Methods and Research Setting Approximately 7.7 percent of New Hampshire's population is food-insecure (Nord, Andrews & Carlson, 2008); 8 percent of the state's population lives in poverty, while 9.4 percent of Grafton County's population lives in poverty (U.S. Census Bureau, 2008). Grafton County was selected as the research site based on proximity to researchers as well as the existence of food insecurity. Grafton County (figure 2) has a population of 81,743 and a population density of 47.7 people per square mile (18.4 people per square kilometer) (U.S. Census Bureau, 2008). Unlike the other two primarily rural northern counties of New Hampshire (Carroll and Coos counties), Grafton County contains two universities that serve as educational and cultural centers (Dartmouth University in Hanover and Plymouth State University in Plymouth). Accordingly these areas attract residents with above-average educational attainment and income, thus offering a variegated set of social and economic conditions which are differentiated from the rest of the county. There are 14 registered food pantries in Grafton County (of a total of 165 in New Hampshire) (New Hampshire Food Bank, 2010). In 2012, there were 92 SNAP-authorized stores within the county, marking a 13 percent increase from 2008 (USDA FNS, 2012a). Approximately 16 percent of students were free lunch eligible in 2008 (USDA FNS, 2012b). In terms of local food potential, there were 10 farmers' markets in 2010 (USDA AMS, 2012) with 3.3 percent of farm sales attributable to direct to consumer sales ; U.S. Census of Agriculture, 2012). A purposive sampling method (Light, Singer, & Willett, 1990) was used to identify respondents (N = 16) who work regularly in Grafton County's PEFS. This included state employees, although the majority were workers and volunteers at food banks, soup kitchens, food pantries, and homeless shelters. These respondents were selected based on their above-average knowledge about hunger, food insecurity, and private emergency food provisioning in Grafton County (beyond their personal experience). Although some questions were specific to the respondent's area of expertise, the same general open-ended question template was used to facilitate informative discussion on topics related to food access, such as affordability, nutrition, and food provisioning (see table 1). The one-on-one semistructured interviews (Morgan & Krueger, 1998) with this group of respondents lasted between 60 and 90 minutes and took place in an office setting, community center, or over the phone (when in-person meetings were difficult to arrange). All interviews were recorded, transcribed, and coded. Participant observation (Flowerdew & Martin, 1997) was conducted at a Plymouth-area soup kitchen that served weekly hot meals for free to attendees. Data from interviews as well as field notes were coded and analyzed using NVivo, qualitative analysis software ( QSR International, 2010). After data was cleaned, data was examined as a whole to gain a general sense of overall meaning and depth. Open coding was undertaken, where material was organized into groups or segments of related information (Rossman & Rallis, 1998). We developed a qualitative codebook for efficient and consistent code assignment. Codes were examined, as well as the overall corpus of information. We identified underlying themes based primarily on respondent narratives. Over time, themes and trends emerged. Overlaps and differences between themes were identified, thus allowing their properties to be refined, ultimately resulting in progressively clear theme categories. Following theme assessment, interconnections and relations between themes were identified through concept mapping and triangulation (Fielding & Fielding, 1986). The authors conducted all interviews and observation, processed all data, and conducted all analysis. Institutional Review Board approval was obtained and all standard research protocols used. Findings from Grafton County Some of the data emerging out of the Grafton County case echoes previous observations about the PEFS. The preliminary data we present in this article is the product of field work, policy evaluation, and literature review. We do not claim that these findings are externally generalizable, although we do see similarities between our observations and those of other researchers, indicating that our data may be indicative of trends elsewhere, especially in rural areas of the northeastern United States where similar demographic and cultural traits exist. In this way, we also see potential in terms of research trajectories and policy reforms for those looking to build capacity between the PEFS and the local food system. Reliance upon Volunteers In relation to the existing criticisms that the PEFS is actually serving a long-term and sustained need and not a short-term or emergency one, many food pantry workers indicated that longterm usage by clients was common. For instance, one pantry worker explained that "most of the people that come in here are...I don't know if I would say chronic, but regulars" (0607).3 In these pantries, representatives talked about getting to know clients over the course of months and years of use; some clients stay and talk with pantry workers for emotional support during food pickups. This long-term usage has been critiqued and connected to the fact that the PEFS is so heavily reliant upon volunteer labor that resultantly there are opportunities for inconsistencies to develop (Lipsky, 1985; Molnar et al., 2001). Ad hoc administration of private emergency food distribution has consequences, such as inconsistent eligibility requirements and quality control (Daponte & Bade, 2006). In Grafton County pantries, eligibility was determined through a combination of criteria, such as pantry worker's personal judgment and preset income criteria. In one large pantry, more refined conditions were followed by staffand volunteers. In this pantry, if it was a client's first visit, then they were allowed to get food no matter what. However, in order to get food on subsequent visits they would need to bring proof of income (their income had to be below a certain amount based on number of household members). The director of this pantry explained, "the only time I turn them away is if they're using the other food pantries....Most of the time they trip themselves up" (0505). When asked about the consequences of using more than one pantry, the same respondent said, "I turn them offfor a whole year....To me, that's stealing food because that's government food involved in both places" (0505). This was not a set rule or policy of the pantry, but a guideline created by the director. Another worker explained that clients needed to fill out a TEFAP form (which determines eligibility under the rubrics of "Program" (already receiving a form of public assistance) and "Income" (one-person weekly income at or below USD370)), but that "it [the form] doesn't turn anybody away" (1215). The downside of a more subjective, informal system is that pantries can be run in a potentially inequitable manner (Daponte & Bade, 2006). In addition, a client who offended a staffmember or volunteer in the past will not be safeguarded against as they would be in a government-run system. A pantry director from a small church-run pantry was asked about assistance eligibility and replied that: We don't ask a lot of questions...We don't take any financial information and you don't need to qualify. I just tell people, "if you need it, you can use it."...You can tell by looking at them, you know? The car they drive, their clothes, you could tell they're not living high offthe hog, so to speak. (0607, emphasis added) In New Hampshire, 92 percent of food pantries and 100 percent of soup kitchens use volunteer labor, while 64 percent of pantries and 46 percent of soup kitchens rely completely on volunteer labor (Feeding America, 2010b). Volunteers partnered with pantry staffto perform tasks. Food has to be inspected, sorted, organized, and in some cases cleaned before it is handed out; how these tasks are carried out varies by pantry. In all pantries visited as part of this research, clients waited in line with other recipients (visible to each other) where nonpantry visitors to the agency could see them openly. In one venue, while pantry clients picked their food from a closet in a church, people working to set up a church dinner worked in the same room; these individuals and the pantry clients were visible openly to each other. These patterns show that by engaging in this private form of food assistance, clients give up any right to confidentiality they may be afforded through other forms of assistance, such as those offered by federal or state forms of food assistance. Another consequence of reliance on volunteer labor is that food standards are frequently disregarded. A set of pantry workers explained how they went to great lengths to utilize some squash donated from a nearby farm: We discovered a couple years ago that he can't keep it here [the pantry] because it will spoil...and then I said I'll take it, I got a place....So now I've got squashes and I keep an eye on them to make sure they aren't spoiling....So I have a room downstairs [in her house] that has no windows and it's about 55 [degrees]. And I put them down in the basement and then I bring them up into the garage and they're stored in the garage where it doesn't freeze. (0506) Pantry and food bank workers often clean and repackage food that is inconveniently packaged (e.g., in bulk) or has been broken open.4 These findings not only underscore the role of volunteer subjectivity, but they more broadly illustrate the negative externalities that can emerge in this unregulated system. Food Preferences: "Change Your Taste Buds" Depending on the agency, food preferences of clients may have minimal influence over foods received. Nutritional, cultural, or taste preferences can be disregarded, while pantry staffbeliefs dictate allotments. A volunteer who worked at a pantry and soup kitchen and also served on the board of the pantry said, "the younger ones [clients] are very, very fussy, they are turning their nose up at different things....Whereas if you're hungry, you accept and you learn to do it and change your taste buds" (0506, emphasis added). In the same interview as the one quoted above, this respondent reflected that "we're a spoiled society" and "there's a lot of honest need, but I think there's also those that are needy who don't help themselves" (0506). This respondent seems to believe that clients should be thankful for whatever they get, no matter what, since it is better than nothing. This is similar in a sense to how pantries are pressured into being thankful for all donations out of fear that refusal of items would jeopardize future giving (for an example, see Winne (2005)). Believing that clients should "change their taste buds" to accommodate the food available at the pantry food represents a misalignment between clients' nutritional well-being and the pantry objective of efficiently distributing all donated food. This respondent held a position of power within the pantry and was able to make managerial-level decisions. Following through on her sentiments means that clients should adjust their personal taste preferences to whatever donors decide to donate. Client preferences are interpreted by pantry staffin number of ways; consider the experience of this employee who worked at a smaller pantry in a northern part of the county: I had a guy call me today and wanted me to take his name offthe list here and I said "OK." I said "did you get a job?" I know he was looking for a job, "no, but I can't eat that crap." He said, "I like to eat organic now, natural food." He said, "I can't eat this stuff, processed kind of food." He said, "not that I don't appreciate what you're doing for me, but I just can't eat that kind of food." I said, "well, get a job" or that's what I felt like saying....Do you know how much that stuffcosts? We're not the end all, we're just supplemental here, we can't provide food for you for the week. I mean its just not going to happen. (0607) This employee appeared offended by this man's decision to stop accessing the pantry. By participating in the PEFS, these individuals relinquish rights and standards they may have in the public retail sphere (i.e., where federally and state enforced food safety regulations are upheld) and as a result are forced to gamble on the whims of the largely unregulated PEFS . This removal of food rights places food-insecure individuals in an even more food-precarious state, disempowering them beyond that which is accomplished through retail markets. One pantry worker explained that when individuals donate food, "lots of times it's ramen noodles because you can donate a lot at a low price" (0709). Food-pantry representatives working with a food-insecure population indicated that this group prefers quick and easy meals in the form of processed products, and also lacks adequate knowledge about nutrition and cooking to make informed food selections. Simultaneously, those accessing pantries revealed that food was a flexible budget item that could be adjusted according to the demands of other expenses. This often leads to trading down of items purchased - from more expensive, healthy items to cheaper, less healthy items. Food pantry representatives commented on how clients, especially young ones, prefer quick and easy products because "it's so much easier to open a can...things that are quick" (0506). Another pantry worker commented that "it's great when they say they cook....It just makes it so much easier to give them bags of nutritional food, but sometimes they'll just want the canned spaghetti, macaroni and cheese, hot dogs...foods that are easy to prepare for families," which she acknowledged as "a problem" (0709). Efforts to reform these eating habits were evident; one pantry worker reflected on how they had tried to switch from white to wheat bread, but found that "the wheat bread was not a hit" (1215). A nutrition professional working at a nonprofit described an attempt to change her clients' eating habits. She explained that her efforts were aimed at making people more nutritionally informed by showing them that eating healthier can be more affordable: We will do a comparison and we will make a meal with Hamburger Helper and we'll make basically homemade Hamburger Helper....I'll do a comparison of what Hamburger Helper costs and what it costs to make it from scratch. It's always of course cheaper to make it from scratch and then we do a taste test. And unfortunately many of the people have grown up with Hamburger Helper so that's what they like....They don't see the difference; how salty and awful it tastes....We'll do a whole cost analysis and they'll see it's about 59 cents a serving if you make it from scratch compared to about 79 cents a serving for Hamburger Helper. (1013) Another pantry worker explained: I think it's pricing, but then we have people, you know I believe it comes from how you grew up. You know, a lot of people shop the way their moms or dads shopped. And some people were just brought up on frozen boxed food and not cooked homemade meals and so that's all they know how to purchase. (0303) This may explain why pantries experience a demand for these easy-to-cook processed foods. While some pantries might push more nutritional options, others send contradictory nutritional messages. Not far from where the abovementioned nutritional professional worked, another pantry worker at the same agency remarked that "the stuffthat's easy for us to get is pasta, canned stuff, pasta mixes, and it's not highly nutritional....Tuna or some kind of a tinned meat, you know, with a Tuna Helper, that's the kind of stuffwe get here because we don't have any way to give them fresh meat" (0607). The food being donated is free for the pantry and free for the clients, made possible through private, often corporate donors. This represents a seemingly collaborative alignment between the need to dispose of unwanted food on behalf of corporate donors and the need for foodinsecure clients to consume food, yet this arrangement is rooted in a short-term outlook and power imbalance where corporate food entities are able to dump unwanted food for free upon a foodinsecure population, thereby realizing short-term profit gains (for the business) at the cost of longterm health of food-insecure individuals and its effect on governments. Assessing Collaborative Potential The rural PEFS appears to be similar to the urban PEFS in a number of ways. It is heavily reliant upon volunteer labor and it serves a significant proportion of the population, often on a regular basis. In the rural context there is a dispersed population. While centralized population centers like cities provide efficient and short-distance transportation networks, rural networks are decentralized with people living in remote areas, often requiring automobile access. This has a few practical consequences. A dispersed population also means that community food-growing opportunities like neighborhood gardens are more difficult to organize and implement when compared to a city where a group of neighbors can have a small vegetable plot within walking distance. Contrastingly, in many rural places the transportation cost of getting to a community space where a garden may be located represents another financial and logistical barrier. Cities are also places where people can more easily congregate to meet and organize reactive and proactive responses to inadequate food access (for example, to grow a neighborhood garden in response to being located in a "food desert"). In urban areas for instance, these have manifested in food justice efforts. In rural areas, the PEFS is the chief response to hunger and food insecurity (in addition to federal and state mandated programs). However, the rural PEFS operates on a smaller scale with fewer numbers of people accessing it and a high degree of malleability. As described earlier in this essay, this informality has been criticized; however, this ability to adapt means that individuals who operate PEFS entities (like food pantries) can take advantage of opportunities without having to obtain approval from higher levels of bureaucracy. In addition, the rural PEFS is often located where the land, soil, water, and air resource base for growing food is abundant. In contrast to the literature that supports the claims that low-income populations prefer processed foods (Drewnowski & Specter, 2004), data from the Grafton County case shows that in the pantries that were able to obtain small amounts of fresh, perishable foods (meats and fresh fruits and vegetables), these quickly became the most popular items. As one pantry worker explained: Most people know that an apple is healthier than a hot dog, but those [hot dogs] are way cheaper, you know, not that they're the same in any way....Here [at the food pantry] they would go for the things that they don't normally get their hands on, which is why those dairy products go fast and those veggies go fast. But I think in general when they are shopping they go for the cheapest, easiest thing to get through to the next week. (1215) In another study of Grafton County, a food pantry employee described how a local hunter donated moose meat: Interviewer: What are the most popular items that you have here in the pantry? Respondent 1: Meat. It's the most expensive... Respondent 2: Oh, was it last year we got the moose meat? We got 500 pounds [230 kg]. And we're thinking, what are we gonna do with all this moose meat? And it flew out of here. I mean, people were calling us and asking us for some. (McEntee, 2011b, p. 251) A key question emerging from this research is, "how do we harness the assets of both the PEFS and local food system to better serve the needs of food-insecure populations?" There is a demand for locally produced produce and meat on behalf of food-insecure individuals (as others have shown; see Hinrichs and Kremer (2002)). The desires of low-income consumers to eat fresh meat and produce (which often is locally produced) as well as to participate in some local food production activities (whether it be hunting or growing vegetables) have been overlooked by researchers. People accessing the PEFS in rural areas are accessing pantries, but also growing their food because it is an affordable way to obtain high-quality food they may otherwise not be able to afford (McEntee, 2011b). Based on the information provided in this article, potential synergies between the PEFS and the local food system in the rural context exist. Specifically, a traditional localism engages "participants through non-capitalist, decommodified means that are affordable and accessible" where "food is grown/raised/hunted, not with the intention to gain profit, but to obtain fresh and affordable food" (McEntee, 2011, pp. 254-255). Traditional localism allows for local food to become an asset for many food-insecure and poor communities that are focusing on the need to address inadequate food access. How could the rural PEFS source more food locally, thereby strengthening the local economy? How could private emergency food entities like food pantries and local food advocates promote food-growing, food-raising, and hunting activities as a means to increase grassroots, local, and affordable access to food? Like many places throughout the U.S., Grafton County is home to small-scale local agriculture operations supported by an enthusiastic public and sympathetic state. Simultaneously, there is the presence of food insecurity and a PEFS seeking to remediate this persistent problem. The actual structure of the PEFS could be thoroughly assessed (beyond the borders of Grafton County). If warranted, this system could be redesigned to prioritize privacy and formalize procedures in terms of ensuring that client food choices are respected. A crucial next step in reforming this system to benefit lowincome and minority clients is to emphasize the ability to grow, raise, and hunt food for their own needs5 through the traditional local concept. This would represent a transformation in which these activities could not only be supported by the PEFS, but also draw upon the social capital of communities in the form of memories and practices of rural people from the near past, all while reducing reliance upon corporate waste. If traditional local efforts were organized on a cooperative model, based on community need and not only the needs of individuals, it would benefit all those participating, drawing on collective community resources, such as food-growing knowledges and skills, access to land, and tools, thereby enhancing the range of rural livelihood strategies. In this sense, these activities are receptive to racial and economic diversity as well as alliance-formation across social groups and movements, all of which are characteristic of the food sovereignty movement (Holt- Giménez & Wang, 2011). In moving forward additional research is needed. While our findings highlight potential shortcomings, there is a lack of data exploring the rural PEFS experience. Specifically, from the demand side, we need more data about the users of this system, specifically in regard to their satisfaction with food being given to them. Are they happy with it? Do they want something different that is not available? Do they lack the ability to cook certain foods being handed out by the pantry? Feeding America's Hunger in America survey asks about client satisfaction; in its 2010 report, only 62.7 percent of surveyed clients were "very satisfied" with the overall quality of the food provided.6 Additionally, the fact that this survey is administered by the same personnel who are distributing food donations raises methodological biases. More needs to be discovered about why such a large proportion of users is not "very satisfied." From the supply side, we need to know more about food being distributed and its nutritional value. Currently, the food being donated and distributed is unregulated to a large degree, especially in rural pantries. Also on the supply side, the source of food provided to Feeding America as well as individual state food banks and food pantries needs to be inventoried with more information beyond just its weight. Knowing the quantity of specific donated products as well as the financial benefit (in terms of tax write-offs) afforded to donors would add transparency. Conclusion: Neoliberal Considerations and Future Directions The findings we have presented in this article are intended to reveal important policy questions about the PEFS and local food movement; we do acknowledge, however, that it also has raised some important questions. In summary, we see opportunities to move forward in enacting a food sovereignty agenda with both local and global scales in mind. First, value-added, market-based local solutions used to address the inadequacies of the current food system are immediately beneficial. However, these should not be accepted as the endall solution. Looking beyond them to determine what else can be accomplished to change the structure of the food system to shiftpower away from oligarchic food structures of the corporate food regime to food citizens, not only food consumers, would result in systemic change. A key consideration in realizing any reform in the PEFS, and simultaneously challenging and transforming the unsustainable global food regime, is recognizing the neoliberal paradigm in which government and economic structures exist. Neoliberalism can be defined as a political philosophy that promotes market-based rather than state-based solutions to social problems, while masking social problems as personal deficiencies. The PEFS is essentially acting as a vent for unwanted food in this system that also provides a financial benefit to the governing food entities (i.e., food businesses). Too often alternatives are hailed as opposing the profit-driven industrial food system simply because they are geographically localized; in reality, they may re-create the classist and racist structures that permeate the larger global system.7 The PEFS is an embedded neoliberal response to food insecurity; while public-assistance enrollment is on the rise, so is participation in the PEFS. This is a shiftin responsibility in who is providing assistance to food-insecure populations from the government to the private sector. In this sense it is a market-based approach to addressing food insecurity (i.e., by dumping food on the private charity sector, market retailers cut their own waste disposal costs), and the result is continual scarcity and the establishment of a system that reinforces the idea that healthy food is a privilege, only accessible to those with adequate financial and social capital. Along these same lines, a form of food localism exists that is arguably detrimental to those without financial and social capital; these efforts have and continue to frame food access solely as an issue of personal responsibility related to economic status and nutritional knowledge (a narrative thoroughly discussed by Guthman (2007, 2008)). This prioritizes market-based solutions to developing local food systems as well as universal forms of food education that emphasize individual health. As Alkon and Mares (2012) explain, Neoliberalism creates subjectivities privileging not only the primacy of the market, but individual responsibility for our own wellbeing. Within U.S. food movements, this refers to an emphasis on citizen empowerment, which, while of course beneficial in many ways, reinforces the notion that individuals and community groups are responsible for addressing problems that were not of their own making. Many U.S. community food security and food justice organizations focus on developing support for local food entrepreneurs, positing such enterprises as key to the creation of a more sustainable and just food system. The belief that the market can address social problems is a key aspect of neoliberal subjectivities. (p. 349) Though elements of both the PEFS and the local food system have arguably been folded into neoliberalization processes through market-based mechanisms, incremental steps to change these dynamics are possible. Reframing issues of food accessibility (including food insecurity, hunger, food deserts, etc.) as issues of food justice moves us beyond an absolute spatial understanding of food issues. For instance, when we only look at physical access to food, we often disregard the more important considerations of class, race, gender (see Alkon and Agyeman, 2011), and sexual orientation that define a person's present position (and over which they often have no control) and which dictate how they engage with the food system. These considerations are present in current food-justice efforts, which seek to ensure that communities have control over the food grown, sold, and consumed there. Rural food justice has been defined using the traditional localism concept: Traditional localism in rural areas engages participants through non-capitalist, decommodified means that are affordable and accessible. Food is grown/raised/hunted, not with the intention to gain profit, but to obtain fresh and affordable food. A traditional localism disengages from the profit-driven food system and illustrates grassroots food production where people have direct control over the quality of the food they consume - a principal goal of food justice. (McEntee, 2011b, pp. 254-255) Utilizing this rural form of food justice involves more than promoting individual food acquiring techniques; it involves developing organizational and institutional strategies that improve the quality of food available to PEFS entities. This is currently accomplished by some, such as when pantries obtain fresh produce through farmer donations or when a food bank develops food-growing capacity. 8 But these types of entities are in the minority. The next stage of realizing food justice, we posit, is to determine how a food sovereignty approach can be utilized in a global North context. Food justice predominantly operates to find solutions within a capitalist framework (and it has been criticized as such) while food sovereignty is explicitly geared toward the dismantling of this system in order to achieve food justice. Regime change and transformation requires more than recognition and control over food-growing resources; it requires alliance and partnership-building between groups to "to address ownership and redistribution over the means of production and reproduction" (Holt- Giménez & Wang, 2011, p.98). Adopted by organizations predominantly located in the global South, food sovereignty is focused on the causes of food system failures and subsequently looks toward "local and international engagement that proposes dismantling the monopoly power of corporations in the food system and redistributing land and the rights to water, seed, and food producing sources" (Holt-Giménez, 2011, p. 324). There is an opportunity for people in the global North not only to learn from the global South food sovereignty movements, but to form connections and alliances between North and South iterations of these movements.9 As discussed above, the dominant food movement narrative is in sync with the economic and development goals of government (e.g., state-sanctioned buy-local campaigns) as well as marketing prerogatives of global food corporations (e.g., "local" being used as marketing label). Building a social movement powerful enough to place meaningful political pressure upon government to support a food system that prioritizes human wellbeing, not profit, is an immediate challenge. Incremental solutions are necessary in order to improve the lives of people now. However, these local solutions, such as innovative farm-to-school programming and other viable models between the local food environment and the PEFS that we have discussed in this article, would be more effective at affecting long-term systemic change if they were coupled with collective approaches to acknowledge and limit the power of the corporate food regime to prevent injustice, while also holding the state accountable for its responsibility to citizens, which it has successfully "relegated to voluntary and/or market-based mechanisms" (Alkon and Mares, 2012, p. 348). Food sovereignty offers more than an oppositional view of neoliberalism, however. The food sovereignty movement advances a model of food citizenship that asserts food as a nutritional and cultural right and the importance of democratic on-the-ground control over one's food. These qualities resonate with food-insecure and disenfranchised communities, urban and rural, in both the global North and South. Sidebar Citation: McEntee, J. C., & Naumova, E. N. (2012). Building capacity between the private emergency food system and the local food movement: Working toward food justice and sovereignty in the global North. Journal of Agriculture, Food Systems, and Community Development, 3(1), 235-253. http://dx.doi.org/10.5304/jafscd.2012.031.012 Copyright © 2012 by New Leaf Associates, Inc. Footnote 1 Cartesian understandings of space utilize a grid-based measurement of physical proximity. These types of proximitybased understandings of food access (i.e., food access is primarily a matter of bringing people physically closer to food retailers, as is promoted by the USDA Food Desert Locator) tend to overlook other nuanced forms of food access based on knowledge, culture, race, and class. 2 The amount of processed food, especially in the form of prepared meals and meals eaten outside the home, is steadily increasing in the United States (Stewart, Blisard, & Jolliffe, 2006). 3 The four-digit number indicates interview location and respondent IDs. 4 A leading antihunger effort in New Hampshire is the New Hampshire Food Bank (NHFB), the state's only food bank and a member of Feeding America. In 2008 the NHFB "distributed over 5 million pounds of donated, surplus food to 386 food pantries, soup kitchens, shelters, day care centers and senior citizen homes" (N.H. Food Bank, 2010). In total N.H. has 441 agencies registered with NHFB that provide food to 71,417 people annually. Grafton County has 18 food pantries, which "distribute non-prepared foods and other grocery products to needy clients, who then prepare and use these items where they live" and where "[F]ood is distributed on a short-term or emergency basis until clients are able to meet their food needs" (N.H. Food Bank, 2010). 5 A noteworthy example of an organization that has begun to accomplish these objectives is The Stop Community Food Centre in Toronto, which was recently described by Levkoe and Wakefield (2012). 6 The remaining categories are: "Somewhat satisfied" (31.3 percent), "Somewhat dissatisfied" (4.8 percent), and "Very dissatisfied" (1.3 percent). 7 For additional discussion of the political economic transition from government to governance, such as the transfer of state functions to nonstate and quasistate entities, see Purcell (2002). 8 An example of this type of effort is that of the Vermont Food Bank, which purchased a farm in 2008 in order to supply the food bank with fresh, high-quality produce as well as to sell the produce. 9 The U.S. Food Sovereignty Alliance has recognized the importance of building these coalitions: "As a US-based alliance of food justice, anti-hunger, labor, environmental, faith-based, and food producer groups, we uphold the right to food as a basic human right and work to connect our local and national struggles to the international movement for food sovereignty" (US Food Sovereignty Alliance, n.d., para. 1). 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Retrieved from http://www.snapretailerlocator.com/ USDA FNS. (2012b). Program data. Retrieved from http://www.fns.usda.gov/pd/cnpmain.htm/ U.S. Food Sovereignty Alliance. (n.d.). About the Alliance. Retrieved 1 June 2012 from http://www.usfoodsovereigntyalliance.org/about Verpy, H., Smith, C., & Reicks, M. (2003). Attitudes and behaviors of food donors and perceived needs and wants of food shelf clients. Journal of Nutrition Education and Behavior, 35(1), 6-15. http://dx.doi.org/10.1016/S1499-4046(06)60321-7 Walmart. (2010). Walmart Corporate: Feeding America. Retrieved 1 March 2010 from http://walmartstores.com/CommunityGiving/ 8803.aspx Warshawsky, D. N. (2010). New power relations served here: The growth of food banking in Chicago. Geoforum, 41(5), 763-775. http://dx.doi.org/10.1016/j.geoforum.2010.04.008 Wekerle, G. R. (2004). Food justice movements: Policy, planning, and networks. Journal of Planning Education and Research, 23(4), 378-386. http://dx.doi.org/10.1177/0739456X04264886 Welsh, J., & MacRae, R. (1998). Food citizenship and community food security. Canadian Journal of Development Studies, 19, 237-55. http://dx.doi.org/10.1080/02255189.1998.9669786 Winne, M. (2005). Waste not, want not? Agriculture and Human Values, 22(2), 203-205. http://dx.doi.org/10.1007/s10460-004-8279-8 Winter, M. (2003). Embeddedness, the new food economy and defensive localism. Journal of Rural Studies, 19(1), 23-32. http://dx.doi.org/10.1016/S0743-0167(02)00053-0 Wu, C., & Eamon, M. K. (2007). Public and private sources of assistance for low-income households. Journal of Sociology & Social Welfare, 34(4), 121-149. AuthorAffiliation Jesse C. McEntee a Food Systems Research Institute and Tufts Initiative for the Forecasting and Modeling of Infectious Diseases Elena N. Naumova b Department of Civil and Environmental Engineering, Tufts University, and Tufts Initiative for the Forecasting and Modeling of Infectious Diseases Submitted 2 May 2012 / Revised 28 June and 26 July 2012 / Accepted 27 July 2012 / Published online 4 December 2012 aCorresponding author: Jesse C. McEntee, PhD, Managing Partner, Food Systems Research Institute LLC; P.O. Box 1141; Shelburne, Vermont 05482 USA; +1-802-448-2403; www.foodsystemsresearchinstitute.com; jmcentee@foodsri.com b Elena N. Naumova, PhD, Associate Dean for Research, School of Engineering; Professor, Department of Civil and Environmental Engineering, Tufts University; also Tufts Initiative for the Forecasting and Modeling of Infectious Diseases (InForMID) (http://informid.tufts.edu/); elena.naumova@tufts.edu Acknowledgments: The authors are grateful to the Economic and Social Research Council's Centre for Business Relationships, Accountability, Sustainability and Society at CardiffUniversity as well as the Center for Rural Partnerships at Plymouth State University for financial support during this research. The authors are also grateful to the three anonymous reviewers who provided constructive feedback on earlier drafts of this article. Word count: 11055Show lessYou have requested "on-the-fly" machine translation of selected content from our databases. This functionality is provided solely for your convenience and is in no way intended to replace human translation. Show full disclaimerNeither ProQuest nor its licensors make any representations or warranties with respect to the translations. The translations are automatically generated "AS IS" and "AS AVAILABLE" and are not retained in our systems. PROQUEST AND ITS LICENSORS SPECIFICALLY DISCLAIM ANY AND ALL EXPRESS OR IMPLIED WARRANTIES, INCLUDING WITHOUT LIMITATION, ANY WARRANTIES FOR AVAILABILITY, ACCURACY, TIMELINESS, COMPLETENESS, NON-INFRINGMENT, MERCHANTABILITY OR FITNESS FOR A PARTICULAR PURPOSE. Your use of the translations is subject to all use restrictions contained in your Electronic Products License Agreement and by using the translation functionality you agree to forgo any and all claims against ProQuest or its licensors for your use of the translation functionality and any output derived there from. Hide full disclaimer Translations powered by LEC.Translations powered by LEC. Copyright New Leaf Associates, Inc. Fall 2012More like this 
    1. THIRDREPORTONTHESTATEOFEDUCATIONINBENGAL;INCLUDINGSOMEACCOUNT OFTHESTATEOFEDUCATIONINBEHAR,ANDACONSIDERATIONOFTHEMEANSADAPTEDTOTHEIMPROVEMENT ANDEXTENSIONOFPUBLICINSTRUCTIONINBYWILLIAMADAM."Thedispositiontomaintainandtheskilltoimproveare thetwoelements,theunionofwhichforms thegreatstatesman."BURKE."Nosystemforanypartofthemunicipaladministration"(ofIndia)"caneveranswer thatisnotdrawnfrom itsancient institutionsorassimilated withthem.1'SIR.THOMASMUNRO.PUBLISHED BYTHEORDEROFGOVERNMENT.CALCUTTA:G.H.HUTTMANN,BENGALMILITARYORPHANPRESS.1838.K--TH IR D R E P O R T ON THE STATE OF EDUCATION IN BERG.&L; INCLUD G SOME ACCOU T OF THE STATE OF EDUCATION I BEHAR, A D A CO SIDERATIO OF THE XEA S ADAPTED TO THE IMPROVEIIENT A D EXTENSION OF PUBLIC I STRUCTIO IN Bv WILLIA ADAM. "The di position to maintain and the kill to improve are tbe two elements, the union of hicb forms the great late man."-BuaK E. " o y tem for any p rt of th«: municipal admini tration" (of India) "can ever an er that i not dra n from it ancient in titution or a imilated with them."-S1a Teo a 11 ao. PUBLISHED BY THE ORDER OF GO ER MENT. CALCUTTA: G. B. HUTTMANN, BE GAL MILITARY ORPHAN PRESS. 1838.

      British government officials of a wide range of positions, such as William Adam, were often sent to the British colonies to report on the status, progress, and areas of improvement of their communities. This excerpt by William Adam, The Third Report on The State of Education in Bengal; Including Some Account of The State of Education in Behar, and A Consideration of The Means Adapted to The Improvement and Extension of Public Instruction in Both Provinces, outlines and contextualizes the ideas in which the British government was approaching education in India. It establishes their commonly thought ideas surrounding the natives, their communities, and how they believe their education is lacking. It is also of importance because it shows how imperialism finds its way in to education and how the British want to perpetuate their colonial and imperialist ideologies through education and teaching the english language. With this we can see commonly held British government sentiment towards education in India.

  4. Mar 2018
    1. Aceite de orégano (origanum vulgare):efecto antifúgnico sofre a. flavus.FACTIBILIDADEl equipo debe ser económicamente viable, así como tener un diseño muy parecido a uno industrial, que este no altere la composición química de la muestra, con la capacidad adecuada para distintos tipos de muestras (diseño optimo), asegurando así que el rendimiento de este sea el mejor posible ajustando los distintos factores que afectaran la eficiencia de obtención de producto.REFERENCIASMatiz, G., Osorio, M. R., Camacho, F., Atencia, M., & Herazo, J. (2012). Diseño y evaluación in vivo de fórmulas para acné basadas en aceites esenciales de naranja (Citrus sinensis), albahaca (Ocimum basilicum L) y ácido acético.Biomédica,32(1), 125-133.ARANGO B, O. S. C. A. R., Bolaños, F., Villota, O., HURTADO B, A. N. D. R. É. S., & Toro, I. (2012). Optimización del rendimiento y contenido de timol de aceite esencial de orégano silvestre obtenido por arrastre con vapor.Biotecnología en el sector agropecuario y agroindustrial,10(2), 217-226.García-Camarillo, E. A., Quezada-Viay, M. Y., Moreno-Lara, J., Sánchez-Hernández, G., Moreno-Martínez, E., & Pérez-Reyes, M. C. J. (2006). Actividad antifúngica de aceites esenciales de canela (Cinnamomum zeylanicum Blume) y orégano (Origanum vulgare L.) y su efecto sobre la producción de aflatoxinas en nuez pecanera [Carya illinoensis (FA Wangenh) K. Koch].Revista Mexicana de Fitopatología,24(1).Ribeiro, O. V., Alva, A., & Valles, J. M. (2001). Extracción y caracterización del aceite esencial de jengibre (Zingiber officinale).Alimentaria,1(1), 38-42.

      APA no alfabético.

      Bueno

    1. Siembra El medio de cultivo utilizado durante el proceso de siembra, fue realizado con un abono comercial de marca fert plant. El cual se preparó colocando en un 1000 ml de agua de la llave 5ml de medio. Los compuestos del medio se observan en la Tabla 2. Table 2 Medio de cultivo. COMPUESTO CONCENTRACION nitrógeno total (n) 6.0 g/l nitrógeno ureico (n) 6.0 g/l fosforo (P2O2) 4.0 g/l potasio soluble en agua 3.0 g/l boro (b) 1.0 g/l cobre (cu) 1.5 g/l hierro (fe) 1.3 g/l manganeso (mn) 0.7 g/l zinc (zn) 2.4 g/l

      Ejemplo para poder empezar con las condiciones del cultivo

  5. Feb 2018
    1. NATIONAL ASSOCIATION OFFICERS WILLIAM G. BRAMHAM, President-Treasurer Office-I I I Corcoran St., Durham, N. C. T elephone-F-0 I 11 EXECUTIVE COMMITTEE THOMAS H. RICHARDSON, Preddant, Eastern League, Chairman Williamsport. Pa. CLARENCE H. ROWLAND, President, Pacific Coast League Los Angeles, Calif. DR. E. M. Wl~OER, President, South Atlantic League, Augusta, Ga. ELMER M. DAILEY, Promotional Director, Ebensburg, Pa. L H. ADDINGTON, Director of Publicity, Durham, N. C. WILLIAM B. CARPENTER, Umpire Advisor, Cincinnati, 0.

      In a rare departure from the normal format for the rules publications, the 1945 edition included significant minor league representation, from the National Association president to minor league presidents.

    1. OFFICIAL PLAYING RULES COMMITIEE -Charleo M. Segar, Chairman, Fred G. Fleig, Secrelary, Charles S. Feeney, Richard B. Ferrell, Dick Butler, Calvin Griffith, John J. McHnle, Joe L, Brown, George MacDonald. Vincent McNamara, and W. D. Ryan.

      Dick Butler, president of the South Atlantic minor league, and Vincent McNamara, president of the New York-Penn minor league, were the only minor league representatives on the rules committee.

    1. OFFICIAL PLAYING RULES COMMITIEE -John H. Johnson, Chairman, Fred G. Fleig, Secretary, Charles S. Feeney, Richard B. Ferrell, John Allyn, Calvin Gr1fhth, John J. McHale, Joe L. Brown. Bobby Bragan, Vincent McNamara. and George Sisle

      Vincent McNamara, president of the New York-Penn minor league, was the only minor league representative on the rules committee.

    1. OFFICIAL PLAYING RULES COMMITTEE -John H. Johnaon, Chairman, Fred G. Fleig, Secretary, Charles S. Feeney, Richard B. Ferrell, Dick Butler, Calvin Griffith, John J. McHale, Joe L. Brown, George MacDonald, Vincent McNnmara, and W. D. Ryan.

      Dick Butler, president of the South Atlantic minor league, and Vincent McNamara, president of the New York-Penn minor league, were the only minor league representatices on the rules committee.

    1. T h e m ech an i cal p a r a d i gm p r o v ed t o b e i r r es i s t i b l e. It w as simple, it was predictable,and above all it worked.

      In what sense did it work and what were the limits within which it worked?

    1. B. J. Cardinale, K. L. Matulich, D. U. Hooper, J. E. Byrnes, E. Duffy, L. Gamfeldt, P. Balvanera, M. I. O'Connor, A. Gonzalez, The functional role of producer diversity in ecosystems. Am. J. Bot. 98, 572–592 (2011).

      Cardinale reviews the roles of "primary producer" biodiversity with respect to ecological processes critical to the functionality and health of terrestrial and marine ecosystems.

    2. J. E. K. Byrnes, L. Gamfeldt, F. Isbell, J. S. Lefcheck, J. N. Griffin, A. Hector, B. J. Cardinale, D. U. Hooper, L. E. Dee, J. E. Duffy, Investigating the relationship between biodiversity and ecosystem multifunctionality: Challenges and solutions. Methods Ecol. Evol. 5, 111–124 (2014).

      Byrne's review focuses on the impacts of assemblage diversity on ecosystem functions.

      This study acknowledges the impact of diversity on resource utilization and thus productivity, however the focus is on the characterization of multi-functionality.

    3. A. D. Barnosky, N. Matzke, S. Tomiya, G. O. U. Wogan, B. Swartz, T. B. Quental, C. Marshall, J. L. McGuire, E. L. Lindsey, K. C. Maguire, B. Mersey, E. A. Ferrer, Has the Earth's sixth mass extinction already arrived? Nature 471, 51–57 (2011).

      Barnosky discusses the events known as mass extinctions and compares the rates of extinction for these events to modern rates of extinction.

    4. (3)

      Has the Earth's sixth mass extinction already arrived? A. D. Barnosky, N. Matzke, S. Tomiya, G. O. U. Wogan, B. Swartz, T. B. Quental, C. Marshall, J. L. McGuire, E. L. Lindsey, K. C. Maguire, B. Mersey, E. A. Ferrer

      This article suggests that the current rate of species extinction is higher than what has been expected in the past (compared against fossil records). The authors propose that this elevated rate of extinction may possibly be the beginning of the 6th known mass extinction event on earth.

      This extinction would drastically lower biodiversity by killing off many species that would otherwise function as carbon sinks. The release of such massive amounts of carbon might have dramatic effects upon the environment.

    1. On 2014 Feb 03, Tom Kindlon commented:

      Which subscales of the SF-36 should be used? Results from a study in Fibromyalgia patients

      (This was originally posted here: http://www.biomedcentral.com/1472-6963/3/25/comments but the formatting has been lost and some people may read the paper on PubMed Central)

      This paper recommends, amongst other questionnaires, the use of the SF-36 questionnaire. But which subscales should be used? One group of researchers[1] decided to use the physical function, role physical, social function and role emotional subscales of the SF-36 to define disability, with a low score on just one of these subscales being sufficient to satisfy the criteria (i.e. there didn't need to be more than one low scores). Since then, this definition[1] has gone on to be used in numerous papers (for example, 2-5).

      But is this a good way of using the SF-36 given the Fukuda definition for CFS[6] requires that there be a "substantial reduction in previous levels of occupational, educational, social, or personal activities".

      Fibromyalgia patients share many similarities with CFS patients and many researchers use CFS and FMS patients together in their studies (for example [7-10]).

      One study[11] recently assessed Fibromyalgia Syndrome (FS) patients using the SF-36 questionnaire. It found that patients could be broken down into two groups using the SF-36 subscales looking at mental well-being (social functioning, role limitation due to emotional health problems, and mental health). "One group demonstrated psychological dysfunction, whereas the other showed normal psychological scores. Physical well-being scores (physical functioning, role limitation due to physical health problems, bodily pain, general health, and vitality) did not differ between FS patients but were altogether below the normal range."

      If this was found to be the same in other populations, it would suggest that perhaps including patients who solely have low scores on subscales assessing mental well-being such as the role emotional and social functioning subscales of SF-36, which is all the CFS definition prepared by Reeves[1] requires, would select a group of people with psychological dysfunction but not necessarily greater physical disability.

      References:

      [1] Reeves WC, Wagner D, Nisenbaum R, Jones JF, Gurbaxani B, Solomon L, Papanicolaou DA, Unger ER, Vernon SD, Heim C. Chronic Fatigue Syndrome – A clinically empirical approach to its definition and study. BMC Medicine 2005, 3:19

      [2] Reeves WC, Heim C, Maloney EM, Youngblood LS, Unger ER, Decker MJ, Jones JF, Rye DB. Sleep characteristics of persons with chronic fatigue syndrome and non-fatigued controls: results from a population-based study. BMC Neurology 2006, 6:41

      [3] Majer M, Jones JF, Unger ER, Youngblood LS, Decker MJ, Gurbaxani B, Heim C, Reeves WC. Perception versus polysomnographic assessment of sleep in CFS and non-fatigued control subjects: results from a population-based study. BMC Neurology 2007, 7:40

      [4] Jones JF, Maloney EM, Boneva RS, Jones AB, Reeves WC. Complementary and alternative medical therapy utilization by people with chronic fatiguing illnesses in the United States. BMC Complementary and Alternative Medicine 2007, 7:12

      [5] Reeves WC, Jones JF, Maloney E, Heim C, Hoaglin DC, Boneva RS, Morrissey M, Devlin R.Prevalence of chronic fatigue syndrome in metropolitan, urban, and rural Georgia. Popul Health Metr. 2007 Jun 8;5:5.

      [6] Fukuda K, Straus SE, Hickie I, Sharpe MC, Dobbins JG, Komaroff A: The chronic fatigue syndrome; a comprehensive approach to its definition and study. Ann Int Med 1994, 121:953-959.

      [7] Teitelbaum JE, Johnson C, St Cyr J. The use of D-ribose in chronic fatigue syndrome and fibromyalgia: a pilot study. J Altern Complement Med. 2006 Nov;12(9):857-62.

      [8] Glass JM. Cognitive dysfunction in fibromyalgia and chronic fatigue syndrome: new trends and future directions. Curr Rheumatol Rep. 2006 Dec;8(6):425-9.

      [9] Zachrisson O, Regland B, Jahreskog M, Jonsson M, Kron M, Gottfries CG. Treatment with staphylococcus toxoid in fibromyalgia/chronic fatigue syndrome--a randomised controlled trial. Eur J Pain. 2002;6(6):455-66.

      [10] Zachrisson O, Regland B, Jahreskog M, Kron M, Gottfries CG. A rating scale for fibromyalgia and chronic fatigue syndrome (the FibroFatigue scale). J Psychosom Res. 2002 Jun;52(6):501-9.

      [11] Oswald J, Salemi S, Michel BA, Sprott H. Use of the Short-Form-36 Health Survey to detect a subgroup of fibromyalgia patients with psychological dysfunction. Clin Rheumatol. 2008 Apr 1


      This comment, imported by Hypothesis from PubMed Commons, is licensed under CC BY.

    2. On 2014 Feb 05, Tom Kindlon commented:

      A CFS study which raises questions about the use of the Role Emotional (RE) subscale of the SF-36 to define CFS

      (This was originally posted here: http://www.biomedcentral.com/1472-6963/3/25/comments but the formatting has been lost and some people may read the paper on PubMed Central)

      As I mentioned in the previous comment, this paper recommends, amongst other questionnaires, the use of the SF-36 questionnaire but does not specify which subscales should be used.

      One group of researchers[1] have decided to use the physical function, role physical, social function and role emotional subscales of the SF-36 to define disability, with a low score on just one of these subscales being sufficient to satisfy the criteria (i.e. there didn't need to be more than one low scores).

      Since then, this definition has gone on to be used in numerous papers (such as [2-5]) as the CDC are using it as the definition they're using for their CFS studies in the US, and they probably have the largest CFS research program in the world. It was used to give the prevalence rate of 2.54% for CFS in the adult population[6]. Most recently, it was used to investigate the prevalence of the reporting of childhoold trauma in this cohort[7].

      A study by Fulcher and White (2000)[8] raises questions about the use of the Role Emotional (RE) subscale of the SF-36 to select patients with CFS. The study involved 66 patients with CFS without a current psychiatric disorder, 30 healthy but sedentary controls, and 15 patients with a current major depressive disorder.

      It found, amongst other things, that "the two patient groups were significantly more incapacitated than the sedentary controls on all SF-36 measures (p<0.001), except that the patients with CFS were not significantly different in emotional or mental function." Also, "the depressed subjects were significantly more incapacitated in emotional and mental functioning than the patients with CFS p<0.001)."

      These results suggest that low scores on the emotional and mental functioning subscales of the SF-36 do not seem to be an intrinsic part of CFS (if they're found, they could be related to comorbid psychiatric issues). They also points out the risks of using the RE subscale alone [especially given CFS shares some characteristics with depression and so some people with depression (but not CFS) could potentially score the required 25 points on the Symptom Inventory] i.e. one could inadvertently include some people who have depression but not CFS, as CFS patients.

      References

      [1] Reeves WC, Wagner D, Nisenbaum R, Jones JF, Gurbaxani B, Solomon L, Papanicolaou DA, Unger ER, Vernon SD, Heim C. Chronic Fatigue Syndrome – A clinically empirical approach to its definition and study. BMC Medicine 2005, 3:19<br><br>

      [2] Raison CL, Lin JM, Reeves WC. Association of peripheral inflammatory markers with chronic fatigue in a population-based sample. Brain Behav Immun. 2008 Dec 11.

      [3] Welberg LA, Capuron L, Miller AH, Pagnoni G, Reeves WC. Neuropsychological performance in persons with chronic fatigue syndrome: results from a population-based study.Majer M, Psychosom Med. 2008 Sep;70(7):829-36.

      [4] Nater UM, Youngblood LS, Jones JF, Unger ER, Miller AH, Reeves WC, Heim C. Alterations in diurnal salivary cortisol rhythm in a population-based sample of cases with chronic fatigue syndrome. Psychosom Med. 2008 Apr;70(3):298-305.

      [5] Nater UM, Maloney E, Boneva RS, Gurbaxani BM, Lin JM, Jones JF, Reeves WC, Heim C. Attenuated morning salivary cortisol concentrations in a population-based study of persons with chronic fatigue syndrome and well controls. J Clin Endocrinol Metab. 2008 Mar;93(3):703-9.

      [6] Reeves WC, Jones JF, Maloney E, Heim C, Hoaglin DC, Boneva RS, Morrissey M, Devlin R. Prevalence of chronic fatigue syndrome in metropolitan, urban, and rural Georgia. Popul Health Metr. 2007 Jun 8;5:5.

      [7] Heim C, Nater UM, Maloney E, Boneva R, Jones JF, Reeves WC. Childhood trauma and risk for chronic fatigue syndrome: association with neuroendocrine dysfunction. Arch Gen Psychiatry. 2009 Jan;66(1):72-80.

      [8] Fulcher KY, White PD. Strength and physiological response to exercise in patients with chronic fatigue syndrome. J Neurol Neurosurg Psychiatry. 2000 Sep;69(3):302-7.


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    1. On 2014 Feb 02, Tom Kindlon commented:

      More symptoms could be added to a CFS Symptom Inventory

      (This was originally posted here: http://www.pophealthmetrics.com/content/3/1/8/comments but the formatting has been removed and some people may not read the paper there either).

      Many would feel that the 8 symptoms used in the CDC '94 definition [1] were chosen in a somewhat arbitrary fashion; so it is to be welcomed that the CDC itself has started to look beyond these symptoms with the CDC CFS Symptom Inventory. The idea of a Short Form of the CDC Symptom Inventory is also interesting.

      However, it is not clear to me where the extra symptoms that are on the CDC CFS Symptom Inventory came from. For example, I didn't see some of the symptoms listed in Reeves et al [2].

      In 2001, De Becker et al [3] published data on the symptoms found in over 2500 patients. They tried to improve on the 1988 [4] and 1994 CDC criteria. They suggested a list of symptoms that could be used to strengthen the ability to select ME/CFS patients. Many of the symptoms they mentioned are not in the CDC CFS Symptom Inventory.

      So to claim that the "CDC Symptom Inventory assesses the full range of CFS associated symptoms" seems questionable. It would be interesting if in future these symptoms (that De Becker et al were suggesting) were added before statistical analyses are performed. The fatigue criteria and functional impairment criteria have become much less restrictive [5]. For example, to satisfy the fatigue criteria, the fatigue is required to be greater than or equal to the medians of the MFI general fatigue (≥ 13) or reduced activity (≥ 10) scales. So it now seems particularly important that the symptom criteria have good sensitivity and specificity or one is going to end up with a definition that leads to very heterogeneous samples.

      References:

      [1] Fukuda K, Straus SE, Hickie I, Sharpe MC, Dobbins JG, Komaroff A: The chronic fatigue syndrome; a comprehensive approach to its definition and study.Ann Int Med 1994, 121:953-959.

      [2] Reeves WC, Lloyd A, Vernon SD, Klimas N, Jason LA, Bleijenberg G, Evengard B, White PD, Nisenbaum R, Unger ER, International Chronic Fatigue Syndrome Study Group: Identification of ambiguities in the 1994 chronic fatigue syndrome research case definition and recommendations for resolution.BMC Health Services Research 2003, 3:25.http://dx.doi.org/10.1186/1472-6963-3-25

      [3] A definition-based analysis of symptoms in a large cohort of patients withchronic fatigue syndrome, P. De Becker, N. McGregor, and K. De Meirleir.Journal of Internal Medicine 2001;250:234-240

      [4] Holmes GP, Kaplan JE, Gantz NM, Komaroff AL, Schonberger LB, Straus SE, et al.: Chronic fatigue syndrome: a working case definition. Ann Intern Med 1988, 108:387-389.

      [5] Reeves WC, Wagner D, Nisenbaum R, Jones JF, Gurbaxani B, Solomon L, Papanicolaou DA,Unger ER, Vernon SD, Heim C: Chronic fatigue syndrome — a clinically empirical approachto its definition and study. BMC Medicine 2005, 3:16.


      This comment, imported by Hypothesis from PubMed Commons, is licensed under CC BY.

    1. On 2014 Jan 08, Tom Kindlon commented:

      New or "Unusual" definition for CFS used in this study

      (This was originally posted on the journal's website here: http://www.biomedcentral.com/1471-2377/6/41/comments. However, the formatting has been removed meaning few may read it there)

      People reading this study need to be aware that it uses a new or "unusual" definition of Chronic Fatigue Syndrome (CFS)[1] so the results may not apply to CFS cohorts as usually defined[2].This definition selects a group covering 2.54% of the adult population[3]. This is much higher than previous estimates of the prevalence of CFS. For example, members of the team in this study have previously estimated the prevalence as 0.235%[4] i.e. the prevalence rate using this definition is 10.8 times the rate found using the more usual CFS definition[2].

      There has been some criticism of this new definition[5]. Unlike previous times when the CDC produced definitions for CFS[2,6], the definition used in this study is generally only being used by the CDC-funded CFS research team.

      References:

      [1] Reeves WC, Wagner D, Nisenbaum R, Jones JF, Gurbaxani B, Solomon L, Papanicolaou DA, Unger ER, Vernon SD, Heim C: Chronic Fatigue Syndrome – A clinically empirical approach to its definition and study. BMC Medicine 2005, 3:19 (15 December 2005)

      [2] Fukuda, K., Straus, S.E., Hickie, I., Sharpe, M.C., Dobbins, J.G., & Komaroff, A. (1994). The chronic fatigue syndrome: A comprehensive approach to its definition and study. Annals of Internal Medicine, 121 (12):953-959. http://www.annals.org/cgi/content/full/121/12/953

      [3] Reeves WC, Jones JF, Maloney E, Heim C, Hoaglin DC, Boneva RS, Morrissey M, Devlin RPrevalence of chronic fatigue syndrome in metropolitan, urban, and rural Georgia. Population Health Metrics 2007, 5:5 (8 June 2007)

      [4] Reyes M, Nisenbaum R, Hoaglin DC, Unger ER, Emmons C, Randall B, Stewart JA, Abbey S, Jones JF, Gantz N, Minden S, Reeves WC: Prevalence and incidence of chronic fatigue syndrome in Wichita, Kansas. Arch Int Med 2003, 163:1530-1536.

      [5] Jason Leonard: Issues with CDC Empirical Case Definition and Prevalence of CFS. IACFS website http://tinyurl.com/2qdgu4 i.e. http://www.iacfsme.org/IssueswithCDCEmpiricalCaseDefinitionandPrev/tabid/105/Default.aspx

      [6] Holmes GP, Kaplan JE, Gantz NM, Komaroff AL, Schonberger LB, Straus SE, et al. Chronic fatigue syndrome: a working case definition. Ann Intern Med. 1988; 108:387-9.


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    1. On 2014 Jan 08, Tom Kindlon commented:

      Various comments

      This paper refers to the use of a re-attribution programme. I thought I would highlight the results of a trial[1] published last year on the topic. It involved testing practice-based training of GPs in reattribution. The method to test the hypothesis was a "cluster randomised controlled trial in 16 practices, 74 GPs and 141 patients with medically unexplained symptoms of 6 hours of reattribution training v. treatment as usual." It found that "Practice-based training in reattribution changed doctor-patient communication without improving outcome of patients with medically unexplained symptoms". Hardly a ringing endorsement of the method.

      There has been a lot of hype about the effectiveness of Cognitive Behavioural Therapy (CBT) for Chronic Fatigue Syndrome (CFS). However, a meta-analysis[2] of its efficacy of CBT for CFS published in 2008 might temper some of the enthusiasm. The studies involved a total of 1371 patients. This involved calculating the size of an effect measure, the Cohen's d value. They calculated d using the following method: "Separate mean effect sizes were calculated for each category of outcome variable (e.g., fatigue self-rating) and for each type of outcome variable (mental, physical, and mixed mental and physical). Studies generally included multiple outcome measures. For all analyses except those that compared different categories or types of outcome variables, we used the mean effect size of all the relevant outcome variables of the study."d was calculated to be 0.48. For anyone unfamiliar with Cohen's d values, they are not bounded by 1; also, the higher the score, the bigger the "effect size" i.e. the more "effective" a treatment was found to be. Cohen's d values are considered to be a small effect size at 0.2, a moderate effect size at 0.5, and a large effect size at 0.8[2].

      There are now hundreds of studies that have found "physical" abnormalities of one sort or another in Chronic Fatigue Syndrome. Thus I question the placement of "Chronic Fatigue" (which many/most people would read as referring to Chronic Fatigue Syndrome as it is listed beside Fibromyalgia and Irritable Bowel Syndrome) in figure 1, "Hypothetical scatter plot of dysfunction versus pathology in primary care consultations" where "evidence of pathological change" is said to be "absent". The numerous abnormalities found raise questions about the placement on the scatter plot or else the limitations of the concept. Also how "reversible" the "abnormal functioning, either physiological or psychological" is, remains far from clear given the low recovery rates.

      References:

      [1] Morriss R, Dowrick C, Salmon P, Peters S, Dunn G, Rogers A, Lewis B, Charles-Jones H, Hogg J, Clifford R, Rigby C, Gask L. Cluster randomised controlled trial of training practices in reattribution for medically unexplained symptoms. Br J Psychiatry. 2007 Dec;191:536-42

      [2] Malouff, J. M., et al., Efficacy of cognitive behavioral therapy for chronic fatigue syndrome: A meta-analysis. Clinical Psychology Review (2007), doi:10.1016/j.cpr.2007.10.004

      [3] Cohen J: Statistical power analysis for the behavioural sciences. Edited by: 2. New Jersey: Lawrence Erlbaum; 1988.


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    1. On 2014 Aug 29, Massimo Ciccozzi commented:

      I read with interest the paper by Santosh et al. HIV 2 infections were geographically restricted, affecting West African countries1, 2, whereas in Europe the prevalence of HIV-2 is high in those countries that have socioeconomic relationships with this African region 3-5 . However, increased migration from/to other countries and international travels might increase the risk of spreading of this virus worldwide. We recently published a phylogenetic analysis of HIV2 case series in Italy using sequences isolated from Indian patients try to connect this infection with other from different countries 6. This article is very interesting and give important information on HIV-2 using a complete genome analysis. In Indian country few papers have been written in Phylogenetic analysis and Santosh and coauthors have given a sort of thrust in this way. In my opinion I only suggest the use of Bayesian Methods to have more robust information about the origin of Indian epidemics, moreover I encourage all Indian researchers, that are able to make sequences, to do this. It is also important that the scientific community don't lower the watch and monitor this infection also because to study HIV 2 can be an opportunity to better understand the HIV disease pathogenesis, protein immunity and this have to be taken before it disappears.<br> References

      1. Dougan S, Patel B, Tosswill JH, and Sinka K: Diagnoses of HIV-1 and HIV-2 in England, Wales, and Northern Ireland associated with west Africa. Sex Transm Infect 2005;81:338– 341.
      2. Matheron S, Mendoza-Sassi G, Simon F, Olivares R, Coulaud JP, and Brun-Vezinet F: HIV-1 and HIV-2 AIDS in African patients living in Paris. AIDS 1997;11:934–936.3

      3. Valadas E, Franc¸a L, Sousa S, and Antunes F: 20 years of HIV-2 infection in Portugal: Trends and changes in epidemiology. Clin Infect Dis 2009;48:1166–1167.

      4. Barin F, Cazein F, Lot F, et al.: Prevalence of HIV-2 and HIV-1 group O infections among new HIV diagnoses in France: 2003– 2006. AIDS 2007;21:2351–2353.

      5. Soriano V, Gomes P, Heneine W, et al.: Human immunodeficiency virus type 2 (HIV-2) in Portugal: Clinical spectrum, circulating subtypes, virus isolation, and plasma viral load. J Med Virol 2000;61:111–116.

      6. D’Ettorre,G, Lo Presti A,Gori C, Cella E,Bertoli A,Vullo V,Perno CF, Ciotti M,. Foley Brian T, and Massimo Ciccozzi. An HIV Type 2 Case Series in Italy: A Phylogenetic Analysis.(2013) AIDS Res HUM Retroviruses


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    1. On 2014 Jan 08, Tom Kindlon commented:

      The references don't show that CFS "affects at least 4 million adults in the United States"

      This is not necessarily a major point to do with the methodology. However given the paper involves CFS medical education, and gives few facts about CFS, one would think that the statements that are made are at least reasonably accurate.

      However, this statement clearly isn't: "CFS affects at least 4 million adults in the United States [2-4]." The references given are the first three references below. The second study found a prevalence of 422 per 100,000 adults and the third study found a prevalence of 235 per 100,000 adults. These aren't even close to 4 million adults - the second one suggests a figure of at least 400,000 adults. This study involved one of the authors (William C Reeves). The other study[1], also involved Reeves, did find a prevalence of 2540 per 100,000 adults, which would equate to over 4 million adults. As can be seen, this is much higher than previous estimates of the prevalence of CFS in the US. The reason for the huge discrepancy is largely because it used a different method of defining CFS[4].

      There has been some criticism of this new definition[5]. Unlike previous times when the CDC produced definitions for CFS[6,7], the definition used in this study is generally only being used by the CDC-funded CFS research team [the cohorts from the Wichita 2-day study in 2003 (not to be confused with the Reyes study) and the Georgia prevalence study[3]]. So it's far from clear that most people would accept that CFS "affects at least 4 million adults in the United States". But certainly two of the three studies given to back up this reference did not find anything close to such a prevalence.

      References:

      [1] Reeves WC, et al. Prevalence of chronic fatigue syndrome in metropolitan, urban, and rural Georgia. Population Health Metrics 2007, 5:5.

      [2] Jason LA, Richman JA, Rademaker AW, Jordan KM, Plioplys AV, Taylor RR, McCready W, Huan CF, Plioplys S: A community-based study of chronic fatigue syndrome. Arch Int Med 1999, 159:2129-2137.

      [3] Reyes M, Nisenbaum R, Hoaglin DC, Emmons C, Stewart G, Randall B, Stewart JA, Abbey S, Jones JF, Gantz N, Minden S, Reeves WC: Prevalence and incidence of chronic fatigue syndrome in Wichita, Kansas. Arch Intern Med 2003, 163:1530-1536.

      [4] Reeves WC, Wagner D, Nisenbaum R, Jones JF, Gurbaxani B, Solomon L, Papanicolaou DA, Unger ER, Vernon SD, Heim C: Chronic Fatigue Syndrome – A clinically empirical approach to its definition and study. BMC Medicine 2005, 3:19 (15 December 2005)

      [5] Jason LA, Richman JA: How Science Can Stigmatize: The Case of Chronic Fatigue Syndrome. Journal of Chronic Fatigue Syndrome, Vol. 14(4), 2007

      [6] Fukuda, K., Straus, S.E., Hickie, I., Sharpe, M.C., Dobbins, J.G., & Komaroff, A. (1994). The chronic fatigue syndrome: A comprehensive approach to its definition and study. Annals of Internal Medicine, 121 (12):953-959. http://www.annals.org/cgi/content/full/121/12/953

      [7] Holmes GP, Kaplan JE, Gantz NM, Komaroff AL, Schonberger LB, Straus SE, et al. Chronic fatigue syndrome: a working case definition. Ann Intern Med. 1988; 108:387-9.


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    1. On 2013 Oct 31, John Cannell commented:

      The authors stated that markers of oxidative stress are present in autism spectrum disorder (ASD). I wonder if the authors are aware that the genes for the antioxidants superoxide dismutase and thioredoxin reductase are directly up-regulated by the secosteroid 1,25 di-hydroxy vitamin D3 (calcitriol). I believe both genes also harbor a vitamin D response element.

      Peehl DM, Shinghal R, Nonn L, Seto E, Krishnan AV, Brooks JD, Feldman D. Molecular activity of 1,25‐dihydroxyvitamin D3 in primary cultures of human prostatic epithelial cells revealed by cDNA microarray analysis. J. Steroid Biochem Mol. Biol 2004;92:131–141. PMID:15555907>

      Calcitriol also directly up-regulates glutathione reductase and increases glutathione levels.

      Jain SK, et alo. Vitamin D upregulates glutamate cysteine ligase and glutathione reductase, and GSH formation, and decreases ROS and MCP-1 and IL-8 secretion in high-glucose exposed U937 monocytes. Biochem Biophys Res Commun. 2013 Jul 19;437(1):7-11. doi: 10.1016/j.bbrc.2013.06.004. Jain SK, 2013

      Also, supplemental vitamin D significantly reduces oxidative stress in humans.

      Nikooyeh B, et al. Daily intake of vitamin D- or calcium-vitamin D-fortified Persian yogurt drink (doogh) attenuates diabetes-induced oxidative stress: evidence for antioxidative properties of vitamin D.J Hum Nutr Diet. 2013 Jul 5. doi: 10.1111/jhn.12142. Nikooyeh B, 2014

      Asemi Z, et al. Vitamin D supplementation affects serum high-sensitivity C-reactive protein, insulin resistance, and biomarkers of oxidative stress in pregnant women. J Nutr. 2013 Sep;143(9):1432-8. doi: 10.3945/jn.113.177550. Asemi Z, 2013

      Thus the vitamin D theory of ASD (vitamin D deficiency being the environmental risk factor for this highly heritable disorder) is consistent with the authors work. Three recent studies, using community controls, have found 25(OH)D levels are significantly lower in children with ASD. Two of the studies below (Mostafa et al and Gong et al) also found ASD severity, as rated on standard ASD rating scales, is inversely correlated with 25(OH)D levels. Mostafa et al found an R value of -.86 for the association of serum 25(OH)D with ASD severity.

      Gong ZL, Luo CM, Wang L, Shen L, Wei F, Tong RJ, Liu Y. Serum 25-hydroxyvitamin D levels in Chinese children with autism spectrum disorders. Neuroreport. 2013 Oct 1. Gong ZL, 2014

      Meguid NA, Hashish AF, Anwar M, Sidhom G. Reduced serum levels of 25-hydroxy and 1,25-dihydroxy vitamin D in Egyptian children with autism. J Altern Complement Med. 2010 Jun;16(6):641-5. Meguid NA, 2010

      Mostafa GA, Al-Ayadhi LY.Reduced serum concentrations of 25-hydroxy vitamin D in children with autism: relation to autoimmunity. J Neuroinflammation. 2012 Aug 17;9:201. Mostafa GA, 2012

      There is a plethora of basic science explaining why low gestational or early childhood 25(OH)D levels would adversely effect brain development.

      Eyles DW, Feron F, Cui X, Kesby JP, Harms LH, Ko P, McGrath JJ, Burne TH. Developmental vitamin D deficiency causes abnormal brain development. Psychoneuroendocrinology. 2009 Dec;34 Suppl 1:S247-57. doi: 10.1016/j.psyneuen.2009.04.015. Epub . Review. Eyles DW, 2009

      DeLuca GC, Kimball SM, Kolasinski J, Ramagopalan SV, Ebers GC. Review: the role of vitamin D in nervous system health and disease. Neuropathol Appl Neurobiol. 2013 Aug;39(5):458-84. doi: 10.1111/nan.12020. DeLuca GC, 2013

      Eyles DW, Burne TH, McGrath JJ. Vitamin D, effects on brain development, adult brain function and the links between low levels of vitamin D and neuropsychiatric disease. Front Neuroendocrinol. 2013 Jan;34(1):47-64. doi: 10.1016/j.yfrne.2012.07.001. Epub 2012 Jul 11. Review. Eyles DW, 2013

      Furthermore, the vitamin D theory of autism explains most of the epidemiological facts of ASD.

      Cannell JJ. On the aetiology of autism. Acta Paediatr. 2010 Aug;99(8):1128-30. Cannell JJ, 2010

      Cannell JJ. Autism and vitamin D. Med Hypotheses. 2008;70(4):750-9. Cannell JJ, 2008

      70% of American toddlers do not take


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    1. On 2013 Dec 06, Tom Kindlon commented:

      Differences in medication usage in the Wichita and Georgia cohorts could be due to the different methods of operationalizing the Fukuda criteria that were used

      Medication usage was not the same in the CFS populations found in the Wichita and Georgia populations.

      The authors summarise the similarities and differences in the following paragraph:

      “Our findings confirm those from a previous study of medication use in persons with CFS from Wichita, Kansas. Both studies found significantly higher usage of pain relievers, gastrointestinal drugs, antidepressants and benzodiazepines by persons with CFS compared to Well controls. Unlike the Wichita study, though, persons with CFS in Georgia were not significantly more likely than controls to use hormones and supplements but were significantly more likely than controls to use muscle relaxants and anti-allergy and cold/sinus medications. Overall, compared to persons with CFS from the Wichita study7, a smaller proportion of persons with CFS in Georgia used pain-relievers (65.5% in Georgia vs. 87.8% in Wichita), supplements/vitamins (44.3% vs. 62.2%), antidepressants (36.3% vs. 41.1%), antibiotics (7.1% vs. 16.7%), hormones (43.4% vs. 52.5%. among women only, 11.8% among all CFS), antihypertensive drugs (17.7% vs. 21.1%), muscle relaxants (8.9% vs. 12.2%), anti-asthma medications (7.1% vs. 12.2%), glucose-lowering drugs (0.9% vs. 4.4%.). Use of other prescription drug categories such as lipid-lowering drugs (11.5% vs.12.2%) and benzodiazepines (12.4%, vs. 11.1% respectively) was similar in Georgia and Wichita (Kansas). The relatively lower usage of most prescription drug medications by persons with CFS in Georgia compared to Wichita may reflect lower seeking of, or lower access to, health care.”

      An alternative reason could be that the two sets of criteria for CFS used were not selecting the same type of patients.

      The current study[1] uses the empiric definition for CFS[2]. As one can see from the paper that gives the criteria involved in the empiric definition, although it is also based on the Fukuda definition[3], a different number of patients satisfy the criteria [2] compared to how the authors used the definition in the initial study of the Wichita population.

      This change looks more significant when one looks at the prevalence rates for CFS obtained in the two cohorts. In the Wichita study[4], the prevalence of CFS was 0.235% (95% confidence interval, 0.142%-0.327%). In the Georgia study[5], the prevalence of CFS was 2.54%, 10.8 times the prevalence in the Wichita study!

      Concerns have been raised[6,7] about the newer method[2] of operationalizing the Fukuda definition[3] that were used in the current study[1]. In the only study[7] using the empiric criteria [2] that I am aware of that did not involve the CDC CFS team, 38% of those chosen as patients with Major Depressive Disorder but not CFS, were found to satisfy the new criteria[2] for CFS.

      References

      1] Boneva RS, Lin JM, Maloney EM, Jones JF, Reeves WC. Use of medications by people with chronic fatigue syndrome and healthy persons: a population-based study of fatiguing illness in Georgia. Health Qual Life Outcomes. 2009 Jul 20;7:67.

      [2] Reeves WC, Wagner D, Nisenbaum R, Jones JF, Gurbaxani B, Solomon L, Papanicolaou DA, Unger ER, Vernon SD, Heim C. Chronic fatigue syndrome--a clinically empirical approach to its definition and study. BMC Med. 2005 Dec 15;3:19.

      [3] Fukuda K, Straus SE, Hickie I, Sharpe MC, Dobbins JG, Komaroff A. The chronic fatigue syndrome; a comprehensive approach to its definition and study. Ann Int Med 1994, 121:953-959.

      [4] Reyes M, Nisenbaum R, Hoaglin DC, Unger ER, Emmons C, Randall B, Stewart JA, Abbey S, Jones JF, Gantz N, Minden S, Reeves WC: Prevalence and incidence of chronic fatigue syndrome in Wichita, Kansas. Arch Int Med 2003, 163:1530-1536.

      [5] Reeves WC, Jones JF, Maloney E, Heim C, Hoaglin DC, Boneva RS, Morrissey M, Devlin R. Prevalence of chronic fatigue syndrome in metropolitan, urban, and rural Georgia. Popul Health Metr. 2007 Jun 8;5:5.

      [6] Jason LA, Richman JA. How science can stigmatize: The case of chronic fatigue syndrome. Journal of Chronic Fatigue Syndrome 2008, 14, 85-103.

      [7] Jason LA, Najar N, Porter N, Reh C. Evaluating the Centers for Disease Control’s empirical chronic fatigue syndrome case definition. Journal of Disability Policy Studies 2009, 20, 93-100. doi:10.1177/1044207308325995


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    1. On 2015 Oct 02, Simon Young commented:

      This is an interesting review but omits some important manuscripts. For example, in the section on the effect of tryptophan loading on mood in healthy volunteers there is no mention of several relevant studies Leathwood PD, 1982, Charney DS, 1982, Greenwood MH, 1974, SMITH B, 1962. The same is true for studies on the effect of tryptophan on sleep Griffiths WJ, 1972, Hartmann E, 1977, Adam K, 1979. The statement in the section 4.1 that “there is little consensus in terms of Trp’s efficacy in treating depression” is not universally accepted. A Cochrane Database Systematic Review concluded that the available evidence suggests that tryptophan is better than placebo at alleviating depression Shaw K, 2002, and tryptophan has been available as a prescription drug for the treatment of depression in a number of countries. The Cochrane Database Systematic Review includes a number of studies not included in the article.


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    1. On 2014 Jan 06, Tom Kindlon commented:

      A more detailed comparison would need to be made before one could say this replicates the previous study

      Part of the aim of this study [1] appears to be to compare the classes that were drawn up with a previous cohort[2-4]. However it does not, to my mind, deal with this in a particularly rigorous fashion. The main quantitative comparisons are the percentages that fall in each class (Tables 6 and 7). However, the percentages will be influenced by the quantity and type of non-CFS controls used which are not the same in each cohort [to explain why this is important using an extreme example: if there were 1000 non-CFS cases for everyone one CFS case in one cohort, the percentages in each class would be different than if there was a 1:1 ratio of CFS to non-CFS cases in the other cohort].

      The first study involved the following[5]: "This population-based case control study enrolled 227 adults identified from the population of Wichita with: (1) CFS (n = 58); (2) non-fatigued controls matched to CFS on sex, race, age and body mass index (n = 55); (3) persons with medically unexplained fatigue not CFS, which we term ISF (n = 59); (4) CFS accompanied by melancholic depression (n = 27); and (5) ISF plus melancholic depression (n = 28)." This was based on the classification in 1997-2000. These were then assessed during 2003. As one can see in Table 2, in 2003, 6 out of the original 58 CFS patients satisfied the CFS definition[6] as originally operationalized, along with 4 out of the controls. 6 more who had previously been excluded because of previous diagnosis of Major Depressive Disorder with melancholic features (MDDm) were also said to satisfy the original CFS diagnosis. The method for operationalizing the CFS definition[6] was then changed so there was then 43 individuals with CFS (see Table 5). Although the same method[5] of operationalizing the CFS definition[6] is used when comparing the Wichita and Georgia cohorts, it is a very different way to select patients and controls than the current study[1]. So it is questionable how interesting it is to compare the percentages in each class.

      A comparison of the percentages of CFS in each class might have been interesting but that was not done.

      Also, apart from the percentages, no tables with quantitative information are presented in the current paper to help the reader compare the class groups to see how valid the comparisons are. This is made more difficult because the original study gave much more detailed data on the six class solution rather than the five class solution [2]: "As the five- and six-class solutions produced practically identical classes, with the exception of the fifth group in the five-class solution being divided into the fifth and sixth classes in the six-class solution, only the six-class solution is presented in Table 2."

      So in that paper, one has classes which have a median BMI of 32, 30 and 30 which are described in the current paper[1] as obese classes while class 5 would be a combination of classes 5 and 6 which have a median BMI of 26 and 27 are classed as non-obese. So numerical comparisons would have been of more use rather than looking at verbal descriptions - describing two groups which have a median BMI of 30 as obese (so approx 50% would have a BMI under 30, one threshold for obesity) and another group which has a median BMI of around 26.5 as non-obese, seems a bit unsatisfactory. There is a 5 class LCA solution in Figure 1 in one of the Wichita papers which gives some verbal descriptions[4]. As one can see, "obese" is only used to describe two of the five LCA groups: - Obese, hypnoea (27.93%) - Obese, hypnoea and stressed (15.32%) - Interoception (16.22%) - Interoception, depression (19.82%) - Well (20.72%)

      However, this does not seem to be the same five class solution for the Wichita cohort as the one described in this paper as the percentages don't match up.

      References:

      [1]. Aslakson E, Vollmer-Conna U, Reeves WC, White PD. Replication of an empirical approach to delineate the heterogeneity of chronic unexplained fatigue. Popul Health Metr. 2009 Oct 5;7:17.

      [2]. Vollmer-Conna U, Aslakson E, White PD: An empirical delineation of the heterogeneity of chronic unexplained fatigue in women. Pharmacogenomics 2006, 7(3):355-364.

      [3]. Aslakson E, Vollmer-Conna U, White PD. The validity of an empirical delineation of heterogeneity in chronic unexplained fatigue. Pharmacogenomics. 2006 Apr;7(3):365-73.

      [4]. Carmel L, Efroni S, White PD, Aslakson E, Vollmer-Conna U, Rajeevan MS. Gene expression profile of empirically delineated classes of unexplained chronic fatigue. Pharmacogenomics. 2006 Apr;7(3):375-86.

      [5]. Reeves WC, Wagner D, Nisenbaum R, Jones JF, Gurbaxani B, Solomon L, Papanicolaou DA, Unger ER, Vernon SD, Heim C. Chronic fatigue syndrome--a clinically empirical approach to its definition and study. BMC Med. 2005 Dec 15;3:19.

      [6]. Fukuda K, Straus SE, Hickie I, Sharpe MC, Dobbins JG, Komaroff A: The chronic fatigue syndrome; a comprehensive approach to its definition and study. Ann Int Med 1994, 121:953-959.


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    2. On 2014 Jan 06, Tom Kindlon commented:

      There has been criticism of how CFS is defined in this study

      I thought it would be useful to point out that there is controversy [1,2] with regard to the criteria [3] used in this study to define Chronic Fatigue Syndrome (CFS).

      For example, the criteria for CFS used in this study do not even require a patient to have fatigue. The authors say: “We used the Multidimensional Fatigue Inventory (MFI-20) [4] to measure characteristics of fatigue” but they do not give the thresholds. Given the MFI-20 has five subscales: (General fatigue, Physical fatigue, Mental fatigue, Activity reduction and Motivation reduction), one would probably suspect that a patient would have to score poorly on one of the headings which have fatigue in their title. But the actual criteria are: a patient needs to score >=13 on MFI general fatigue or >=10 on reduced activity. Note, one could score >=10 on the MFI reduced activity questions without necessarily being fatigued (one could be depressed or even lazy) (only current major depressive disorder with melancholic features (MDDm) is an exclusion for this definition of CFS).

      This is despite the fact that in the current paper, the authors say: “Chronic fatigue syndrome (CFS) is a common, debilitating illness whose hallmark symptoms involve fatigue and fatigability”. Many other questions have been raised about the criteria for CFS that were used in this study. For example, the authors only considered current MDDm to be exclusionary for CFS while the International CFS Study group recommended that conditions (including MDDm) were considered exclusions unless they had been “resolved for more than 5 years before the onset of the current chronically fatiguing illness”[5].

      Prevalence figures show that the criteria, that were used for this cohort, are selecting a broader group than previous criteria for CFS. Based on the figures derived from this cohort, the prevalence of CFS was estimated at 2.54% [6]. Other studies using similar methodology (but which did not operationalize the criteria [7] for the CFS in the same way as this study) estimated the prevalence of CFS to be 0.235% (95% confidence interval, 0.142%-0.327%) and 0.422% (95% confidence interval, 0.29%-0.56%) [8,9].

      References:

      [1]. Jason LA, & Richman JA. How science can stigmatize: The case of chronic fatigue syndrome. Journal of CFS 2007;14:85-103.

      [2]. Jason LA, Najar N, Porter N, Reh C. Evaluating the Centers for Disease Control's empirical chronic fatigue syndrome case definition. Journal of Disability Policy Studies 2009;20;93.

      [3]. Reeves WC, Wagner D, Nisenbaum R, Jones JF, Gurbaxani B, Solomon L, Papanicolaou DA, Unger ER, Vernon SD, Heim C: Chronic fatigue syndrome--a clinically empirical approach to its definition and study. BMC Medicine 2005, 3:19.

      [4]. Smets EM, Garssen B, Bonke B, De Haes JC. The multidimensional fatigue inventory (MFI) psychometric qualities of an instrument to assess fatigue. J Psychosom Res 1995; 39: 315–25.

      [5]. Reeves WC, Lloyd A, Vernon SD, Klimas N, Jason LA, Bleijenberg G, Evengard B, White PD, Nisenbaum R, Unger ER; International Chronic Fatigue Syndrome Study Group. Identification of ambiguities in the 1994 chronic fatigue syndrome research case definition and recommendations for resolution. BMC Health Serv Res. 2003 Dec 31;3(1):25.

      [6]. Reeves WC, Jones JF, Maloney E, Heim C, Hoaglin DC, Boneva RS, Morrissey M, Devlin R. Prevalence of chronic fatigue syndrome in metropolitan, urban, and rural Georgia. Popul Health Metr. 2007 Jun 8;5:5.

      [7]. Fukuda K, Straus SE, Hickie I, Sharpe MC, Dobbins JG, Komaroff A. The chronic fatigue syndrome; a comprehensive approach to its definition and study. Ann Int Med 1994, 121:953-959.

      [8]. Reyes M, Nisenbaum R, Hoaglin DC, Unger ER, Emmons C, Randall B, Stewart JA, Abbey S, Jones JF, Gantz N, Minden S, Reeves WC: Prevalence and incidence of chronic fatigue syndrome in Wichita, Kansas. Arch Int Med 2003, 163:1530-1536.

      [9]. Jason LA, Richman JA, Rademaker AW, Jordan KM, Plioplys AV, Taylor RR, McCready W, Huang CF, Plioplys S. A community-based study of chronic fatigue syndrome. Arch Intern Med. 1999 Oct 11;159(18):2129-37.


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    3. On 2014 Jan 06, Tom Kindlon commented:

      Why are we only given information on 3 out of the 8 SF-36 subscales?

      Reading this paper, one could be forgiven for thinking that the SF-36 questionnaire only has 3 subscales: Physical Functioning, Mental Health and Social Functioning as that is all we are given information on. In fact, of course, the SF-36 questionnaire has 8 subscales: Physical function, Role physical, Bodily pain, General health, Vitality, Social function, Role emotional and Mental health[1]. The authors use the empiric definition for CFS[2] which requires at a minimum that the "role physical" and "role emotional" subscales also be measured. We also know that all 8 subscales were measured in this cohort[3]. So why was the information not given?

      If one was not giving the authors the benefit of the doubt, one could speculate that it was because Table 4 would not look as good, as the Chi-squared calculations would not reach statistical significance for the missing data. But that would be speculation - there could be other reasons for the missing information.

      Perhaps the authors could post the relevant data now.

      I am not simply being mischievous - I would be interested in particular to see what are the scores for Classes 1 and 2 which include nearly all of the CFS patients (88/92, 95.7%).

      References:

      [1] Ware JE, Sherbourne CD: The MOS 36-item short form health survey (SF-36): conceptual framework and item selection. Med Care 1992, 30:473-483.

      [2] Reeves WC, Wagner D, Nisenbaum R, Jones JF, Gurbaxani B, Solomon L, Papanicolaou DA, Unger ER, Vernon SD, Heim C: Chronic fatigue syndrome--a clinically empirical approach to its definition and study. BMC Medicine 2005, 3:19.

      [3] An evaluation of exclusionary medical/psychiatric conditions in the definition of chronic fatigue syndrome. Jones JF, Lin JM, Maloney EM, Boneva RS, Nater UM, Unger ER, Reeves WC. BMC Med. 2009 Oct 12;7(1):57. - see Tables 5 and 6.


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    1. On 2016 Sep 19, Morten Oksvold commented:

      Please note that a rather extensive correction was published 7 December 2011: "The wrong images were mistakenly presented for day 3 for the wild-type and the racX ylmE double mutant in figure S4. The original and correct images are now shown. Also, the wrong image was presented for the mixture of L-amino acids in panel B of fig. S13 and has now been removed."

      In 2013, the Losick group published results showing that D-amino acids inhibited bacterial growth and the expression of biofilm matrix genes and that the strain they originally used to study biofilm formation (B. subtilis) has a mutation in the D-tyrosyl-tRNA deacylase gene, an enzyme that prevents the misincorporation of D-amino acids into protein (Leiman et al., 2013). In a B. subtilis strain, which has a working copy of this gene, D–amino acids did not inhibit biofilm formation. The conclusion from their study was that "the susceptibility of B. subtilis to the biofilm-inhibitory effects of D-amino acids is largely, if not entirely, due to their toxic effects on protein synthesis.

      Does that mean that they no longer see D-amino acids as a specific mechanism to disassemble biofilms in B. subtilis but rather as nonspecific inhibitors of growth in some genetic backgrounds?

      Leiman et al. (2013) make no comment on the ability of D-amino acids to inhibit biofilm formation in staphylococcus aureus and Pseudomonas aeruginosa, as claimed in this article. The whole concept of biofilm dissasembly by D-amino acids therefore appears confusing.

      It was recently published an article showing that D-amino acids do not inhibit biofilm formation in Staphylococcus aureus (Sarkar S and Pires MM, 2015).


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    1. On 2013 Dec 20, Raphael Stricker commented:

      Fatal Clostridium Difficile Colitis Following Treatment for Lyme Disease: The Wrong Message.

      Raphael B. Stricker, MD* and Lorraine Johnson, JD, MBA*

      *International Lyme and Associated Diseases Society, P.O. Box 341461, Bethesda, MD 20827-1461. www.ILADS.org

      Holzbauer and colleagues (1) describe a case of fatal Clostridium difficile colitis in a patient treated with ten weeks of oral antibiotics for chronic Lyme disease. Rather than focusing on patient-specific risk factors and prevention of antibiotic-related complications, the authors preach about the dangers of treating Lyme disease outside the controversial guidelines of the Infectious Diseases Society of America (IDSA), which were the subject of an antitrust investigation by the Connecticut Attorney General (2,3). In doing so, the authors exaggerate the risks of treating Lyme disease and ignore the risks of failing to treat an ongoing spirochetal infection that may cause disability equivalent to congestive heart failure, and even death (4,5). Consequently the emphasis of the case report is misguided and ultimately detrimental to patient care.

      In the single case described here, no information is given about cellular or humoral immune dysfunction that may have contributed to the rapid demise of the 52-year-old patient. This rapid demise is unusual in patients less than 80 years old with C. difficile colitis (6) and suggests the presence of a hypervirulent C. difficile ribotype that might explain the clinical course. Furthermore, the authors fail to mention whether the patient received probiotic therapy during the extended oral antibiotic treatment. Probiotic therapy appears to be effective in avoiding antibiotic-induced complications, and evidence suggests that certain probiotics may neutralize C. difficile toxin (7,8). The lack of probiotic therapy may have been a significant factor in this patient’s demise.

      As for the appropriateness of antibiotic therapy in a patient with clinical and laboratory evidence of chronic Lyme disease, two points should be considered. First, two approaches to treatment of this tickborne illness have been described in the medical literature. The approach promulgated by IDSA proscribes extended antibiotic therapy for persistent symptoms related to infection with Borrelia burgdorferi, the spirochetal agent of Lyme disease (2). In contrast, the competing approach of the International Lyme and Associated Diseases Society (ILADS) considers this therapy to be appropriate based on evidence of persistent spirochetal infection (4,9,10). Second, the patient described in the report received a course of oral antibiotics that is shorter than the antibiotic courses endorsed or accepted by IDSA for chronic conditions such as tuberculosis, leprosy, complicated actinomycosis, Whipple’s disease, Q fever endocarditis, alveolar echinococcosis, osteomyelitis and asplenia prophylaxis; the risks of prolonged antibiotic therapy are considered acceptable for these conditions (11-18). While several clinical studies have demonstrated the safety of extended oral and intravenous antibiotic therapy for patients diagnosed with Lyme disease (19-22), caution should always be exercised in administering extended antibiotic therapy to any patient with a chronic infectious disease.

      References

      1. Holzbauer SM, Kemperman MM, Lynfield R. Death due to community-associated Clostridium difficile in a woman receiving prolonged antibiotic therapy for suspected Lyme disease. Clin Infect Dis 2010;51:369-70.

      2. Johnson L, Stricker RB. The Infectious Diseases Society of America Lyme guidelines: a cautionary tale about development of clinical practice guidelines. Philos Ethics Humanit Med 2010;5:9.

      3. Johnson L, Stricker RB. Final report of the Lyme Disease Review Panel of the Infectious Diseases Society of America: A Pyrrhic victory? Clin Infect Dis 2010;51:1108-9.

      4. Cameron DJ. Proof that chronic Lyme disease exists. Interdiscip Perspect Infect Dis 2010;2010:876450.

      5. Centers for Disease Control and Prevention (CDC). Three sudden cardiac deaths associated with Lyme carditis - United States, November 2012-July 2013. MMWR Morb Mortal Wkly Rep. 2013;62:993-6.

      6. Kotila SM, Virolainen A, Snellman M, Ibrahem S, Jalava J, Lyytikäinen O. Incidence, case fatality and genotypes causing Clostridium difficile infections, Finland, 2008. Clin Microbiol Infect 2011;17:888-93.

      7. McFarland LV. Meta-analysis of probiotics for the prevention of antibiotic associated diarrhea and the treatment of Clostridium difficile disease. Am J Gastroenterol 2006;101:812-22.

      8. Castagliuolo I, Riegler MF, Valenick L, LaMont JT, Pothoulakis C. Saccharomyces boulardii protease inhibits the effects of Clostridium difficile toxins A and B in human colonic mucosa. Infect Immun 1999;67:302-7.

      9. Stricker RB. Counterpoint: Long-term antibiotic therapy improves persistent symptoms associated with Lyme disease. Clin Infect Dis 2007;45:149-57.

      10. Stricker RB, Johnson L. Lyme disease: The next decade. Infect Drug Resist 2011;4:1–9.

      11. Small PM, Fujiwara PI. Management of tuberculosis in the United States. N Engl J Med 2001;345:189-200.

      12. Cox H, Kebede Y, Allamuratova S, Ismailov G, Davletmuratova Z, Byrnes G, Stone C, Niemann S, Rüsch-Gerdes S, Blok L, Doshetov D. Tuberculosis recurrence and mortality after successful treatment: impact of drug resistance. PLoS Med 2006;3:e384.

      13. Garner JP, Macdonald M, Kumar PK. Abdominal actinomycosis. Int J Surg 2007;5:441-8.

      14. Freeman HJ. Tropheryma whipplei infection. World J Gastroenterol 2009;15:2078-80.

      15. Liu YH, Wang XG, Gao JS, Qingyao Y, Horton J. Continuous albendazole therapy in alveolar echinococcosis: long-term follow-up observation of 20 cases. Trans R Soc Trop Med Hyg 2009;103:768-78.

      16. Lazzarini L, Lipsky BA, Mader JT. Antibiotic treatment of osteomyelitis: what have we learned from 30 years of clinical trials? Int J Infect Dis 2005;9:127-38.

      17. Price VE, Blanchette VS, Ford-Jones EL.The prevention and management of infections in children with asplenia or hyposplenia. Infect Dis Clin North Am 2007;21:697-710, viii-ix.

      18. Beytout J, Tournilhac O, Laurichesse H. Antibiotic prophylaxis in splenectomized adults. Presse Med 2003;32(28 Suppl):S17-9.

      19. Donta ST. Tetracycline therapy for chronic Lyme disease. Clin Infect Dis 1997;25 Suppl 1:S52-6.

      20. Donta ST. Macrolide therapy of chronic Lyme disease. Med Sci Monit 2003;9:PI136-42.

      21. Stricker RB, Green CL, Savely VR, Chamallas SN, Johnson L. Safety of intravenous antibiotic therapy in patients referred for treatment of neurologic Lyme disease. Minerva Med 2010; 101:1–7.

      22. Stricker RB, Delong AK, Green CL, Savely VR, Chamallas SN, Johnson L. Benefit of intravenous antibiotic therapy in patients referred for treatment of neurologic Lyme disease. Int J Gen Med 2011;4:639-46.

      Disclosure: RBS is a member of the International Lyme and Associated Diseases Society (ILADS) and a director of LymeDisease.org. He has no financial or other conflicts to declare.


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    1. On 2016 Jan 08, Tom Kindlon commented:

      This study uses the (so-called) empiric CFS criteria (Reeves et al., 2005)

      Although they don't make it very clear, this study used the Reeves et al. (2005) criteria(1) for defining Chronic Fatigue Syndrome (CFS) (sometimes described by the CDC as an operationalization of the Fukuda et al. (1994) criteria (2)). This can be seen by examining the Reeves et al. (2007) paper on the Georgia cohort (2).

      These (Reeves) criteria greatly increased the prevalence of CFS. The "empirical" definition gives a prevalence rate of 2.54% of the adult population(3) compared to 0.235% (95% confidence interval, 0.142%-0.327%) and 0.422% (95% confidence interval, 0.29%-0.56%) when the Fukuda definition (3) was used in previous population studies in the US(4,5).

      The definition lacks specificity. For example, one research study(6) found that 38% of those with a diagnosis of a Major Depressive Disorder were misclassified as having CFS using the empirical/Reeves definition. A letter of mine discussed my concerns in more detail(7).

      Due to the problems with the criteria, these criteria have not been used by researchers outside those contracted to analyse CDC data (apart from Leonard Jason's research team who studied it and showed problems with it (6)).

      References:

      1 Reeves WC, Wagner D, Nisenbaum R, Jones JF, Gurbaxani B, Solomon L, Papanicolaou DA, Unger ER, Vernon SD, Heim C. Chronic fatigue syndrome – a clinically empirical approach to its definition and study. BMC Med. 2005;3:19.

      2 Reeves WC, Jones JF, Maloney E, Heim C, Hoaglin DC, Boneva RS, Morrissey M, Devlin R. Prevalence of chronic fatigue syndrome in metropolitan, urban, and rural Georgia. Popul Health Metr. 2007 Jun 8;5:5.

      3 Fukuda K, Straus SE, Hickie I, Sharpe MC, Dobbins JG, Komaroff A. The chronic fatigue syndrome; a comprehensive approach to its definition and study. Ann Int Med 1994, 121:953-959.

      4 Reyes M, Nisenbaum R, Hoaglin DC, Unger ER, Emmons C, Randall B, Stewart JA, Abbey S, Jones JF, Gantz N, Minden S, Reeves WC: Prevalence and incidence of chronic fatigue syndrome in Wichita, Kansas. Arch Int Med 2003, 163:1530-1536.

      5 Jason LA, Richman JA, Rademaker AW, Jordan KM, Plioplys AV, Taylor RR, McCready W, Huang CF, Plioplys S. A community-based study of chronic fatigue syndrome. Arch Intern Med. 1999 Oct 11;159(18):2129-37.

      6 Jason, LA, Najar N, Porter N, Reh C. Evaluating the Centers for Disease Control's empirical chronic fatigue syndrome case definition. Journal of Disability Policy Studies 2008, doi:10.1177/1044207308325995.

      7 Kindlon T. Criteria used to define chronic fatigue syndrome questioned. Psychosom Med. 2010 Jun;72(5):506-7


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    1. On 2013 Oct 31, John Cannell commented:

      The authors stated that markers of oxidative stress are present in autism spectrum disorder (ASD). I wonder if the authors are aware that the genes for the antioxidants superoxide dismutase and thioredoxin reductase are directly up-regulated by the secosteroid 1,25 di-hydroxy vitamin D3 (calcitriol). I believe both genes also harbor a vitamin D response element.

      Peehl DM, Shinghal R, Nonn L, Seto E, Krishnan AV, Brooks JD, Feldman D. Molecular activity of 1,25‐dihydroxyvitamin D3 in primary cultures of human prostatic epithelial cells revealed by cDNA microarray analysis. J. Steroid Biochem Mol. Biol 2004;92:131–141. PMID:15555907>

      Calcitriol also directly up-regulates glutathione reductase and increases glutathione levels.

      Jain SK, et alo. Vitamin D upregulates glutamate cysteine ligase and glutathione reductase, and GSH formation, and decreases ROS and MCP-1 and IL-8 secretion in high-glucose exposed U937 monocytes. Biochem Biophys Res Commun. 2013 Jul 19;437(1):7-11. doi: 10.1016/j.bbrc.2013.06.004. Jain SK, 2013

      Also, supplemental vitamin D significantly reduces oxidative stress in humans.

      Nikooyeh B, et al. Daily intake of vitamin D- or calcium-vitamin D-fortified Persian yogurt drink (doogh) attenuates diabetes-induced oxidative stress: evidence for antioxidative properties of vitamin D.J Hum Nutr Diet. 2013 Jul 5. doi: 10.1111/jhn.12142. Nikooyeh B, 2014

      Asemi Z, et al. Vitamin D supplementation affects serum high-sensitivity C-reactive protein, insulin resistance, and biomarkers of oxidative stress in pregnant women. J Nutr. 2013 Sep;143(9):1432-8. doi: 10.3945/jn.113.177550. Asemi Z, 2013

      Thus the vitamin D theory of ASD (vitamin D deficiency being the environmental risk factor for this highly heritable disorder) is consistent with the authors work. Three recent studies, using community controls, have found 25(OH)D levels are significantly lower in children with ASD. Two of the studies below (Mostafa et al and Gong et al) also found ASD severity, as rated on standard ASD rating scales, is inversely correlated with 25(OH)D levels. Mostafa et al found an R value of -.86 for the association of serum 25(OH)D with ASD severity.

      Gong ZL, Luo CM, Wang L, Shen L, Wei F, Tong RJ, Liu Y. Serum 25-hydroxyvitamin D levels in Chinese children with autism spectrum disorders. Neuroreport. 2013 Oct 1. Gong ZL, 2014

      Meguid NA, Hashish AF, Anwar M, Sidhom G. Reduced serum levels of 25-hydroxy and 1,25-dihydroxy vitamin D in Egyptian children with autism. J Altern Complement Med. 2010 Jun;16(6):641-5. Meguid NA, 2010

      Mostafa GA, Al-Ayadhi LY.Reduced serum concentrations of 25-hydroxy vitamin D in children with autism: relation to autoimmunity. J Neuroinflammation. 2012 Aug 17;9:201. Mostafa GA, 2012

      There is a plethora of basic science explaining why low gestational or early childhood 25(OH)D levels would adversely effect brain development.

      Eyles DW, Feron F, Cui X, Kesby JP, Harms LH, Ko P, McGrath JJ, Burne TH. Developmental vitamin D deficiency causes abnormal brain development. Psychoneuroendocrinology. 2009 Dec;34 Suppl 1:S247-57. doi: 10.1016/j.psyneuen.2009.04.015. Epub . Review. Eyles DW, 2009

      DeLuca GC, Kimball SM, Kolasinski J, Ramagopalan SV, Ebers GC. Review: the role of vitamin D in nervous system health and disease. Neuropathol Appl Neurobiol. 2013 Aug;39(5):458-84. doi: 10.1111/nan.12020. DeLuca GC, 2013

      Eyles DW, Burne TH, McGrath JJ. Vitamin D, effects on brain development, adult brain function and the links between low levels of vitamin D and neuropsychiatric disease. Front Neuroendocrinol. 2013 Jan;34(1):47-64. doi: 10.1016/j.yfrne.2012.07.001. Epub 2012 Jul 11. Review. Eyles DW, 2013

      Furthermore, the vitamin D theory of autism explains most of the epidemiological facts of ASD.

      Cannell JJ. On the aetiology of autism. Acta Paediatr. 2010 Aug;99(8):1128-30. Cannell JJ, 2010

      Cannell JJ. Autism and vitamin D. Med Hypotheses. 2008;70(4):750-9. Cannell JJ, 2008

      70% of American toddlers do not take


      This comment, imported by Hypothesis from PubMed Commons, is licensed under CC BY.

    1. On 2013 Oct 31, John Cannell commented:

      The authors stated that markers of oxidative stress are present in autism spectrum disorder (ASD). I wonder if the authors are aware that the genes for the antioxidants superoxide dismutase and thioredoxin reductase are directly up-regulated by the secosteroid 1,25 di-hydroxy vitamin D3 (calcitriol). I believe both genes also harbor a vitamin D response element.

      Peehl DM, Shinghal R, Nonn L, Seto E, Krishnan AV, Brooks JD, Feldman D. Molecular activity of 1,25‐dihydroxyvitamin D3 in primary cultures of human prostatic epithelial cells revealed by cDNA microarray analysis. J. Steroid Biochem Mol. Biol 2004;92:131–141. PMID:15555907>

      Calcitriol also directly up-regulates glutathione reductase and increases glutathione levels.

      Jain SK, et alo. Vitamin D upregulates glutamate cysteine ligase and glutathione reductase, and GSH formation, and decreases ROS and MCP-1 and IL-8 secretion in high-glucose exposed U937 monocytes. Biochem Biophys Res Commun. 2013 Jul 19;437(1):7-11. doi: 10.1016/j.bbrc.2013.06.004. Jain SK, 2013

      Also, supplemental vitamin D significantly reduces oxidative stress in humans.

      Nikooyeh B, et al. Daily intake of vitamin D- or calcium-vitamin D-fortified Persian yogurt drink (doogh) attenuates diabetes-induced oxidative stress: evidence for antioxidative properties of vitamin D.J Hum Nutr Diet. 2013 Jul 5. doi: 10.1111/jhn.12142. Nikooyeh B, 2014

      Asemi Z, et al. Vitamin D supplementation affects serum high-sensitivity C-reactive protein, insulin resistance, and biomarkers of oxidative stress in pregnant women. J Nutr. 2013 Sep;143(9):1432-8. doi: 10.3945/jn.113.177550. Asemi Z, 2013

      Thus the vitamin D theory of ASD (vitamin D deficiency being the environmental risk factor for this highly heritable disorder) is consistent with the authors work. Three recent studies, using community controls, have found 25(OH)D levels are significantly lower in children with ASD. Two of the studies below (Mostafa et al and Gong et al) also found ASD severity, as rated on standard ASD rating scales, is inversely correlated with 25(OH)D levels. Mostafa et al found an R value of -.86 for the association of serum 25(OH)D with ASD severity.

      Gong ZL, Luo CM, Wang L, Shen L, Wei F, Tong RJ, Liu Y. Serum 25-hydroxyvitamin D levels in Chinese children with autism spectrum disorders. Neuroreport. 2013 Oct 1. Gong ZL, 2014

      Meguid NA, Hashish AF, Anwar M, Sidhom G. Reduced serum levels of 25-hydroxy and 1,25-dihydroxy vitamin D in Egyptian children with autism. J Altern Complement Med. 2010 Jun;16(6):641-5. Meguid NA, 2010

      Mostafa GA, Al-Ayadhi LY.Reduced serum concentrations of 25-hydroxy vitamin D in children with autism: relation to autoimmunity. J Neuroinflammation. 2012 Aug 17;9:201. Mostafa GA, 2012

      There is a plethora of basic science explaining why low gestational or early childhood 25(OH)D levels would adversely effect brain development.

      Eyles DW, Feron F, Cui X, Kesby JP, Harms LH, Ko P, McGrath JJ, Burne TH. Developmental vitamin D deficiency causes abnormal brain development. Psychoneuroendocrinology. 2009 Dec;34 Suppl 1:S247-57. doi: 10.1016/j.psyneuen.2009.04.015. Epub . Review. Eyles DW, 2009

      DeLuca GC, Kimball SM, Kolasinski J, Ramagopalan SV, Ebers GC. Review: the role of vitamin D in nervous system health and disease. Neuropathol Appl Neurobiol. 2013 Aug;39(5):458-84. doi: 10.1111/nan.12020. DeLuca GC, 2013

      Eyles DW, Burne TH, McGrath JJ. Vitamin D, effects on brain development, adult brain function and the links between low levels of vitamin D and neuropsychiatric disease. Front Neuroendocrinol. 2013 Jan;34(1):47-64. doi: 10.1016/j.yfrne.2012.07.001. Epub 2012 Jul 11. Review. Eyles DW, 2013

      Furthermore, the vitamin D theory of autism explains most of the epidemiological facts of ASD.

      Cannell JJ. On the aetiology of autism. Acta Paediatr. 2010 Aug;99(8):1128-30. Cannell JJ, 2010

      Cannell JJ. Autism and vitamin D. Med Hypotheses. 2008;70(4):750-9. Cannell JJ, 2008

      70% of American toddlers do not take


      This comment, imported by Hypothesis from PubMed Commons, is licensed under CC BY.

    1. On 2013 Oct 31, John Cannell commented:

      The authors found markers oxidative stress is present in autism spectrum disorder (ASD). I wonder if the authors are aware that the genes for the antioxidants superoxide dismutase and thioredoxin reductase are directly up-regulated by the secosteroid 1,25 di-hydroxy vitamin D3 (calcitriol). I believe both genes also harbor a vitamin D response element.

      Peehl DM, Shinghal R, Nonn L, Seto E, Krishnan AV, Brooks JD, Feldman D. Molecular activity of 1,25‐dihydroxyvitamin D3 in primary cultures of human prostatic epithelial cells revealed by cDNA microarray analysis. J. Steroid Biochem Mol. Biol 2004;92:131–141. PMID:15555907>

      Calcitriol also directly up-regulates glutathione reductase and increases glutathione levels.

      Jain SK, et alo. Vitamin D upregulates glutamate cysteine ligase and glutathione reductase, and GSH formation, and decreases ROS and MCP-1 and IL-8 secretion in high-glucose exposed U937 monocytes. Biochem Biophys Res Commun. 2013 Jul 19;437(1):7-11. doi: 10.1016/j.bbrc.2013.06.004. Jain SK, 2013

      Also, supplemental vitamin D significantly reduces oxidative stress in humans.

      Nikooyeh B, et al. Daily intake of vitamin D- or calcium-vitamin D-fortified Persian yogurt drink (doogh) attenuates diabetes-induced oxidative stress: evidence for antioxidative properties of vitamin D.J Hum Nutr Diet. 2013 Jul 5. doi: 10.1111/jhn.12142. Nikooyeh B, 2014

      Asemi Z, et al. Vitamin D supplementation affects serum high-sensitivity C-reactive protein, insulin resistance, and biomarkers of oxidative stress in pregnant women. J Nutr. 2013 Sep;143(9):1432-8. doi: 10.3945/jn.113.177550. Asemi Z, 2013

      Thus the vitamin D theory of ASD (vitamin D deficiency being the environmental risk factor for this highly heritable disorder) is consistent with the authors work. Three recent studies, using community controls, have found 25(OH)D levels are significantly lower in children with ASD. Two of the studies below (Mostafa et al and Gong et al) also found ASD severity, as rated on standard ASD rating scales, is inversely correlated with 25(OH)D levels. Mostafa et al found an R value of -.86 for the association of serum 25(OH)D with ASD severity.

      Gong ZL, Luo CM, Wang L, Shen L, Wei F, Tong RJ, Liu Y. Serum 25-hydroxyvitamin D levels in Chinese children with autism spectrum disorders. Neuroreport. 2013 Oct 1. Gong ZL, 2014

      Meguid NA, Hashish AF, Anwar M, Sidhom G. Reduced serum levels of 25-hydroxy and 1,25-dihydroxy vitamin D in Egyptian children with autism. J Altern Complement Med. 2010 Jun;16(6):641-5. Meguid NA, 2010

      Mostafa GA, Al-Ayadhi LY.Reduced serum concentrations of 25-hydroxy vitamin D in children with autism: relation to autoimmunity. J Neuroinflammation. 2012 Aug 17;9:201. Mostafa GA, 2012

      There is a plethora of basic science explaining why low gestational or early childhood 25(OH)D levels would adversely effect brain development.

      Eyles DW, Feron F, Cui X, Kesby JP, Harms LH, Ko P, McGrath JJ, Burne TH. Developmental vitamin D deficiency causes abnormal brain development. Psychoneuroendocrinology. 2009 Dec;34 Suppl 1:S247-57. doi: 10.1016/j.psyneuen.2009.04.015. Epub . Review. Eyles DW, 2009

      DeLuca GC, Kimball SM, Kolasinski J, Ramagopalan SV, Ebers GC. Review: the role of vitamin D in nervous system health and disease. Neuropathol Appl Neurobiol. 2013 Aug;39(5):458-84. doi: 10.1111/nan.12020. DeLuca GC, 2013

      Eyles DW, Burne TH, McGrath JJ. Vitamin D, effects on brain development, adult brain function and the links between low levels of vitamin D and neuropsychiatric disease. Front Neuroendocrinol. 2013 Jan;34(1):47-64. doi: 10.1016/j.yfrne.2012.07.001. Epub 2012 Jul 11. Review. Eyles DW, 2013

      Furthermore, the vitamin D theory of autism explains most of the epidemiological facts of ASD.

      Cannell JJ. On the aetiology of autism. Acta Paediatr. 2010 Aug;99(8):1128-30. Cannell JJ, 2010

      Cannell JJ. Autism and vitamin D. Med Hypotheses. 2008;70(4):750-9. Cannell JJ, 2008

      70% of American toddlers do not take the Ameri


      This comment, imported by Hypothesis from PubMed Commons, is licensed under CC BY.

    1. On 2013 Oct 31, John Cannell commented:

      The authors stated that markers of oxidative stress are present in autism spectrum disorder (ASD). I wonder if the authors are aware that the genes for the antioxidants superoxide dismutase and thioredoxin reductase are directly up-regulated by the secosteroid 1,25 di-hydroxy vitamin D3 (calcitriol). I believe both genes also harbor a vitamin D response element.

      Peehl DM, Shinghal R, Nonn L, Seto E, Krishnan AV, Brooks JD, Feldman D. Molecular activity of 1,25‐dihydroxyvitamin D3 in primary cultures of human prostatic epithelial cells revealed by cDNA microarray analysis. J. Steroid Biochem Mol. Biol 2004;92:131–141. PMID:15555907>

      Calcitriol also directly up-regulates glutathione reductase and increases glutathione levels.

      Jain SK, et alo. Vitamin D upregulates glutamate cysteine ligase and glutathione reductase, and GSH formation, and decreases ROS and MCP-1 and IL-8 secretion in high-glucose exposed U937 monocytes. Biochem Biophys Res Commun. 2013 Jul 19;437(1):7-11. doi: 10.1016/j.bbrc.2013.06.004. Jain SK, 2013

      Also, supplemental vitamin D significantly reduces oxidative stress in humans.

      Nikooyeh B, et al. Daily intake of vitamin D- or calcium-vitamin D-fortified Persian yogurt drink (doogh) attenuates diabetes-induced oxidative stress: evidence for antioxidative properties of vitamin D.J Hum Nutr Diet. 2013 Jul 5. doi: 10.1111/jhn.12142. Nikooyeh B, 2014

      Asemi Z, et al. Vitamin D supplementation affects serum high-sensitivity C-reactive protein, insulin resistance, and biomarkers of oxidative stress in pregnant women. J Nutr. 2013 Sep;143(9):1432-8. doi: 10.3945/jn.113.177550. Asemi Z, 2013

      Thus the vitamin D theory of ASD (vitamin D deficiency being the environmental risk factor for this highly heritable disorder) is consistent with the authors work. Three recent studies, using community controls, have found 25(OH)D levels are significantly lower in children with ASD. Two of the studies below (Mostafa et al and Gong et al) also found ASD severity, as rated on standard ASD rating scales, is inversely correlated with 25(OH)D levels. Mostafa et al found an R value of -.86 for the association of serum 25(OH)D with ASD severity.

      Gong ZL, Luo CM, Wang L, Shen L, Wei F, Tong RJ, Liu Y. Serum 25-hydroxyvitamin D levels in Chinese children with autism spectrum disorders. Neuroreport. 2013 Oct 1. Gong ZL, 2014

      Meguid NA, Hashish AF, Anwar M, Sidhom G. Reduced serum levels of 25-hydroxy and 1,25-dihydroxy vitamin D in Egyptian children with autism. J Altern Complement Med. 2010 Jun;16(6):641-5. Meguid NA, 2010

      Mostafa GA, Al-Ayadhi LY.Reduced serum concentrations of 25-hydroxy vitamin D in children with autism: relation to autoimmunity. J Neuroinflammation. 2012 Aug 17;9:201. Mostafa GA, 2012

      There is a plethora of basic science explaining why low gestational or early childhood 25(OH)D levels would adversely effect brain development.

      Eyles DW, Feron F, Cui X, Kesby JP, Harms LH, Ko P, McGrath JJ, Burne TH. Developmental vitamin D deficiency causes abnormal brain development. Psychoneuroendocrinology. 2009 Dec;34 Suppl 1:S247-57. doi: 10.1016/j.psyneuen.2009.04.015. Epub . Review. Eyles DW, 2009

      DeLuca GC, Kimball SM, Kolasinski J, Ramagopalan SV, Ebers GC. Review: the role of vitamin D in nervous system health and disease. Neuropathol Appl Neurobiol. 2013 Aug;39(5):458-84. doi: 10.1111/nan.12020. DeLuca GC, 2013

      Eyles DW, Burne TH, McGrath JJ. Vitamin D, effects on brain development, adult brain function and the links between low levels of vitamin D and neuropsychiatric disease. Front Neuroendocrinol. 2013 Jan;34(1):47-64. doi: 10.1016/j.yfrne.2012.07.001. Epub 2012 Jul 11. Review. Eyles DW, 2013

      Furthermore, the vitamin D theory of autism explains most of the epidemiological facts of ASD.

      Cannell JJ. On the aetiology of autism. Acta Paediatr. 2010 Aug;99(8):1128-30. Cannell JJ, 2010

      Cannell JJ. Autism and vitamin D. Med Hypotheses. 2008;70(4):750-9. Cannell JJ, 2008

      70% of American toddlers do not take


      This comment, imported by Hypothesis from PubMed Commons, is licensed under CC BY.

    1. On 2015 Aug 12, Tom Kindlon commented:

      This study uses the (so-called) empiric CFS criteria (Reeves et al., 2005)

      This study used the Reeves et al. (2005) criteria(1) for defining Chronic Fatigue Syndrome (CFS) (sometimes described by the CDC as an operationalization of the Fukuda et al. (1994) criteria (2)).

      These (Reeves) criteria greatly increased the prevalence of CFS. The "empirical" definition gives a prevalence rate of 2.54% of the adult population(3) compared to 0.235% (95% confidence interval, 0.142%-0.327%) and 0.422% (95% confidence interval, 0.29%-0.56%) when the Fukuda definition was used in previous population studies in the US(4,5).

      The definition lacks specificity. For example, one research study(6) found that 38% of those with a diagnosis of a Major Depressive Disorder were misclassified as having CFS using the empirical/Reeves definition. A letter of mine discussed my concerns in more detail(7).

      Due to the problems with the criteria, these criteria have not been used by researchers outside those contracted to analyse CDC data (apart from Leonard Jason's research team who studied it and showed problems with it (6)).

      References:

      1 Reeves WC, Wagner D, Nisenbaum R, Jones JF, Gurbaxani B, Solomon L, Papanicolaou DA, Unger ER, Vernon SD, Heim C. Chronic fatigue syndrome – a clinically empirical approach to its definition and study. BMC Med. 2005;3:19.

      2 Fukuda K, Straus SE, Hickie I, Sharpe MC, Dobbins JG, Komaroff A. The chronic fatigue syndrome; a comprehensive approach to its definition and study. Ann Int Med 1994, 121:953-959.

      3 Reeves WC, Jones JF, Maloney E, Heim C, Hoaglin DC, Boneva RS, Morrissey M, Devlin R. Prevalence of chronic fatigue syndrome in metropolitan, urban, and rural Georgia. Popul Health Metr. 2007 Jun 8;5:5.

      4 Reyes M, Nisenbaum R, Hoaglin DC, Unger ER, Emmons C, Randall B, Stewart JA, Abbey S, Jones JF, Gantz N, Minden S, Reeves WC: Prevalence and incidence of chronic fatigue syndrome in Wichita, Kansas. Arch Int Med 2003, 163:1530-1536.

      5 Jason LA, Richman JA, Rademaker AW, Jordan KM, Plioplys AV, Taylor RR, McCready W, Huang CF, Plioplys S. A community-based study of chronic fatigue syndrome. Arch Intern Med. 1999 Oct 11;159(18):2129-37.

      6 Jason, LA, Najar N, Porter N, Reh C. Evaluating the Centers for Disease Control's empirical chronic fatigue syndrome case definition. Journal of Disability Policy Studies 2008, doi:10.1177/1044207308325995.

      7 Kindlon T. Criteria used to define chronic fatigue syndrome questioned. Psychosom Med. 2010 Jun;72(5):506-7


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    1. On 2016 Sep 27, Alem Matthees commented:

      The 'normal range' was not a strict criterion for recovery nor was it based on healthy scores

      The editorial by Bleijenberg & Knoop (2011) contains a misleading statement: “PACE used a strict criterion for recovery: a score on both fatigue and physical function within the range of the mean plus (or minus) one standard deviation of a healthy person’s score. In accordance with this criterion, the recovery rate of cognitive behavioural and graded exercise therapy was about 30%—although not very high, the rate is significantly higher than that with both other interventions.” [1]

      However, the PACE publication did not report on "recovery" [2] and the PACE authors issued a statement to that effect [3] despite previously approving the editorial before it was published [4,5]. The normal range overlapped with trial eligibility criteria for severe disabling fatigue [2]. The largest overlap was with SF-36 physical function, where 13% of participants simultaneously met the normal range on this measure and the entry criteria for "significant disability" [6]. The individual participant data recently released from the PACE trial reveals that 45% (60/134) of those within the normal range at 52-week follow-up still met Oxford CFS criteria [7].

      It is disappointing that the Lancet and Bleijenberg & Knoop stand by the comment on recovery despite being alerted of the problems [5]. The Press Complaints Commission ruled that the editorial was misleading [4,5]. Oddly enough, both Bleijenberg & Knoop have previously co-authored papers where a score of 60 (the threshold for normal physical function) was regarded as severe impairment [8-11].

      The normal range was not based on healthy people of working age only. For example, the normal range for physical function was based on a general population that included the elderly and chronically disabled [3]. If the normal range was based on a healthy population as asserted, the threshold for normal physical function would be 85 points or more, not 60 or more [6]. A preliminary re-analysis of recovery in the PACE trial, based on the protocol-specified recovery criteria, shows that the recovery rates in the CBT and GET groups were 6.8% and 4.4% respectively, and not significantly higher than with specialist medical care alone [7].

      References

      1) Bleijenberg G, Knoop H. Chronic fatigue syndrome: where to PACE from here? Lancet. 2011 Mar 5;377(9768):786-8. doi: 10.1016/S0140-6736(11)60172-4. Epub 2011 Feb 18. PMID: 21334060. http://www.thelancet.com/journals/lancet/article/PIIS0140-6736(11)60172-4/fulltext

      2) White PD, Goldsmith KA, Johnson AL, Potts L, Walwyn R, DeCesare JC, Baber HL, Burgess M, Clark LV, Cox DL, Bavinton J, Angus BJ, Murphy G, Murphy M, O'Dowd H, Wilks D, McCrone P, Chalder T, Sharpe M; PACE trial management group. Comparison of adaptive pacing therapy, cognitive behaviour therapy, graded exercise therapy, and specialist medical care for chronic fatigue syndrome (PACE): a randomised trial. Lancet. 2011 Mar 5;377(9768):823-36. doi: 10.1016/S0140-6736(11)60096-2. Epub 2011 Feb 18. PMID: 21334061. https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3065633/

      3) White PD, Goldsmith KA, Johnson AL, Walwyn R, Baber HL, Chalder T, Sharpe M, [on behalf of the coauthors]. The PACE trial in chronic fatigue syndrome — Authors' reply. The Lancet, Volume 377, Issue 9780, Pages 1834 - 1835, 28 May 2011 (Published Online: 17 May 2011). doi:10.1016/S0140-6736(11)60651-X http://www.thelancet.com/journals/lancet/article/PIIS0140-6736(11)60651-X/fulltext

      4) http://www.pcc.org.uk/cases/adjudicated.html?article=ODQwOQ

      5) Continuing Correspondence Between Countess of Mar and Professor Peter White and Professor Sir Simon Wessely. 26 January 2013. http://forums.phoenixrising.me/index.php?threads/continuing-correspondence-countess-of-mar-and-prof-white-and-prof-sir-s-wessely.21545/

      6) Matthees A. Re: Tackling fears about exercise is important for ME treatment, analysis indicates. BMJ Rapid Response. 21 January 2015. http://www.bmj.com/content/350/bmj.h227/rr-16

      7) Matthees A, Kindlon T, Maryhew C, Stark P, Levin B. A preliminary analysis of ‘recovery’ from chronic fatigue syndrome in the PACE trial using individual participant data. Virology Blog. 21 September 2016. http://www.virology.ws/wp-content/uploads/2016/09/preliminary-analysis.pdf

      8) van't Leven M, Zielhuis GA, van der Meer JW, Verbeek AL, Bleijenberg G. Fatigue and chronic fatigue syndrome-like complaints in the general population. Eur J Public Health. 2010 Jun;20(3):251-7. Epub 2009 Aug 18. PMID: 19689970. http://eurpub.oxfordjournals.org/content/20/3/251.long

      9) Tummers M, Knoop H, van Dam A, Bleijenberg G. Implementing a minimal intervention for chronic fatigue syndrome in a mental health centre: a randomized controlled trial. Psychol Med. 2012 Oct;42(10):2205-15. doi: 10.1017/S0033291712000232. Epub 2012 Feb 21. PMID: 22354999. http://www.ncbi.nlm.nih.gov/pubmed/22354999

      10) Stulemeijer M, de Jong LW, Fiselier TJ, Hoogveld SW, Bleijenberg G. Cognitive behaviour therapy for adolescents with chronic fatigue syndrome: randomised controlled trial. BMJ. 2005 Jan 1;330(7481):14. Epub 2004 Dec 7. doi: 10.1136/bmj.38301.587106.63. PMID: 15585538. http://www.ncbi.nlm.nih.gov/pmc/articles/PMC539840

      11) Heins M, Knoop H, Nijs J, Feskens R, Meeus M, Moorkens G, Bleijenberg G. Influence of symptom expectancies on stair-climbing performance in chronic fatigue syndrome: effect of study context. Int J Behav Med. 2013 Jun;20(2):213-8. doi: 10.1007/s12529-012-9253-2. PMID: 22865100. http://www.ncbi.nlm.nih.gov/pubmed/22865100


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    1. On 2016 Sep 27, Alem Matthees commented:

      Post-hoc outcome switching inflated clinical response rates by several times

      The primary outcomes as pre-specified in the published PACE trial protocol [1] were abandoned after the trial was over but before the unmasking of data [2] (although the trial was already open-label). While the new primary outcomes are useful, they were group-level and therefore not a direct replacement of the original primary outcomes, which were individual-level i.e. the proportion of participants meeting thresholds for fatigue and physical function.

      The thresholds for individual-level improvement on the measures of fatigue and physical function were eventually replaced with post-hoc analyses after the unmasking of data [3], and it is unclear whether these changes were independently approved. The new thresholds have been criticised for being too lax, much less stringent than the pre-specified version, poorly calculated, and a possible example of "outcome reporting bias" [4,5].

      On 8 September 2016, Queen Mary University of London (QMUL) released the PACE trial primary outcome results as defined in the published trial protocol [6]. This happened one day before the deadline to appeal the Information Tribunal’s ruling that QMUL must disclose a selection of de-identified participant-level data under the Freedom of Information Act (see EA/2015/0269).

      Here is a comparison of the different rates: the clinically useful difference in both fatigue and physical function (Lancet 2011) [3] was 45% for SMC, 59% for CBT, and 61% for GET; the overall improvers or positive outcomes for both fatigue and physical function (QMUL 2016) [6] were 10% for SMC, 20% for CBT, and 21% for GET.

      Without going into the issues with the nature and generalisability of the reported benefits, these new results provide a more realistic estimation of the clinical response rates of CBT and GET. However it also indicates that post-hoc outcome switching had inflated the estimated response rates in the PACE trial by several times. This exaggeration allowed proponents of CBT and GET to claim that 60% improved after these therapies (often without mentioning the SMC control rate of 45%). Outcome switching is recognised as a major problem in the research community [7].

      There is also evidence that the PACE trial investigators changed the primary outcome measures in the trial registration entry (ISRCTN54285094 [8]). Using web.archive.org shows that an earlier version dated May 2005 [9] describes the primary outcomes with details about the pre-specified thresholds for improvement, but the current version only describes the primary hypotheses being tested or general objectives, without those additional details, allowing the investigators to change their primary outcomes without appearing to be deviating from the trial registration details.

      References

      1) White PD, Sharpe MC, Chalder T, DeCesare JC, Walwyn R; PACE trial group. Protocol for the PACE trial: a randomised controlled trial of adaptive pacing, cognitive behaviour therapy, and graded exercise, as supplements to standardised specialist medical care versus standardised specialist medical care alone for patients with the chronic fatigue syndrome/myalgic encephalomyelitis or encephalopathy. BMC Neurol. 2007 Mar 8;7:6. PMID: 17397525. https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2147058/

      2) Walwyn R, Potts L, McCrone P, Johnson AL, DeCesare JC, Baber H, Goldsmith K, Sharpe M, Chalder T, White PD. A randomised trial of adaptive pacing therapy, cognitive behaviour therapy, graded exercise, and specialist medical care for chronic fatigue syndrome (PACE): statistical analysis plan. Trials. 2013 Nov 13;14:386. doi: 10.1186/1745-6215-14-386. PMID: 24225069. https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4226009/

      3) White PD, Goldsmith KA, Johnson AL, Potts L, Walwyn R, DeCesare JC, Baber HL, Burgess M, Clark LV, Cox DL, Bavinton J, Angus BJ, Murphy G, Murphy M, O'Dowd H, Wilks D, McCrone P, Chalder T, Sharpe M; PACE trial management group. Comparison of adaptive pacing therapy, cognitive behaviour therapy, graded exercise therapy, and specialist medical care for chronic fatigue syndrome (PACE): a randomised trial. Lancet. 2011 Mar 5;377(9768):823-36. doi: 10.1016/S0140-6736(11)60096-2. Epub 2011 Feb 18. PMID: 21334061. https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3065633/

      4) Giakoumakis J. The PACE trial in chronic fatigue syndrome. Lancet. 2011 May 28;377(9780):1831; author reply 1834-5. doi: 10.1016/S0140-6736(11)60689-2. Epub 2011 May 16. PMID: 21592554. http://www.thelancet.com/journals/lancet/article/PIIS0140-6736(11)60689-2/fulltext

      5) Stouten B, Goudsmit EM, Riley N. The PACE trial in chronic fatigue syndrome. Lancet. 2011 May 28;377(9780):1832-3; author reply 1834-5. doi: 10.1016/S0140-6736(11)60685-5. Epub 2011 May 16. PMID: 21592558. http://www.thelancet.com/journals/lancet/article/PIIS0140-6736(11)60685-5/fulltext

      6) Goldsmith KA, White PD, Chalder T, Johnson AL, Sharpe M. The PACE trial: analysis of primary outcomes using composite measures of improvement. 8 September 2016. http://www.wolfson.qmul.ac.uk/images/pdfs/pace/PACE_published_protocol_based_analysis_final_8th_Sept_2016.pdf

      7) http://compare-trials.org/

      8) http://www.controlled-trials.com/ISRCTN54285094

      9) <http://web.archive.org/web/20050524130106/http://www.controlled-trials.com/mrct/trial/CHRONIC FATIGUE SYNDROME/1042/40645.html>


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    1. On 2014 Feb 06, Anastasia L Bodnar commented:

      This comment focuses on the claim by Aris and Leblanc that CryAb1 toxin was detected. In short, they used an incorrect method and an incorrect standard.

      The ELISA kit used by Aris and Leblanc to detect Bt was made by a company called Agdia (as described in section 2.4. of the paper). The kit was created and tested to detect Bt in plant tissues (Agdia doesn’t make any kits for animal tissues). This is potentially a problem because a kit that is not tested on mammalian tissues might cross-react with proteins found in mammals that aren’t found in plants, giving a false positive result. ELISA methods have been developed for Cry proteins in mammalian blood, but these methods have had varying success.

      German researchers developed an ELISA method for cows’ blood, which was able to detect Cry proteins in blood that was spiked with the protein. They did not find any significant difference between cows that had been fed Bt and conventional maize for a two month period, and all values detected in all cows’ blood were less than 1.5 ng/mL. Paul V, 2008

      Aris and Leblanc did cite a paper that showed fragments and intact Bt protein could be detected with ELISA in the gastrointestinal tract (not in blood). Aris and Leblanc did not mention that the researchers found that Bt was probably digested in cattle, and suggested that a different method besides ELISA should be used to confirm presence of Cry protein. Lutz B, 2005

      Aris and Leblanc also cited a paper that used ELISA to detect Cry protein in pigs. ELISA, immunochromatography, and immunoblot were sucessful in detecting Cry protein fragments in the gastrointestinal tract. Aris and Leblanc did not mention that the researchers did not detect any Cry protein in blood with any of these methods. Chowdhury EH, 2003

      In addition to using an incorrect method to detect Cry proteins in blood, Aris and Leblanc also used an incorrect standard. Aris and LeBlanc created Cry protein solutions of 0.1 to 10 ng/mL. In Table 2, they report that a a range of 0 to 1.50 ng/mL was detected in maternal blood and 0 to 0.14 was detected in fetal cord blood. The mean and SD for maternal was 0.19 ng/mL ± 0.30 and for fetal was 0.04 ± 0.04 ng/mL. Ideally, test values will be in the middle of a standard curve. Any values outside or at the edges of of the standard curve may be false positives. Aris and Leblanc could have confirmed their results with a Western blot or any number of other methods, but they did not.


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    1. On 2016 Dec 20, Alessandro Rasman commented:

      Anatomical stenosis of the internal jugular veins : supportive evidence of chronic cerebrospinal venous insufficiency ?

      Andrea Baiocchini, MD Raffaele Toscano, Wilfredo von Lorch and Franca Del Nonno National Institute for Infectious Diseases "L. Spallanzani", Via Portuense 292, 00149 Rome, Italy, +390655170277, Fax +390655170430

      We write in relation to the editorial commentary from Khan et Tselis (1) who rightly suggest caution to consider chronic cerebrospinal venous insufficiency (CCSVI) as a pathological entity and cast serious doubt on its relevance to multiple sclerosis (MS); they forecast properly designed studies to investigate the relevance of CCSVI to MS, in order to carry out interventional procedures.

      The absence of extracranial venous stenosis at the earliest stage of MS makes it an unlikely cause of the disease (2). The idea of venous congestion as a possible contributor to the pathogenesis of MS has been discussed for the past 40 years, but remained widely unappreciated by the scientific community.

      In contrast with other authors, Zamboni et al (3) defined CCSVI as a vascular condition associated with MS; it is characterized by multiple intraluminal stenosing malformations of the principal pathways of extracranial venous drainage, particularly in the internal jugular veins (IJVs) and the azygous vein (AZY), that restrict the normal outflow of blood from the brain. In the study of Zamboni et al there was significant extracranial venous stenosis localised at the principal level of the cerebrospinal venous segments as detected by selective venography and anomalies of venous outflow at color Doppler high resolution examination. The pathological consequences of CCSVI have been hypothesised to emanate from chronic venous reflux and hypertension leading to increased iron deposition in the brain and subsequent MS pathology, including inflammation and neurodegeneration.

      Other recent reports found no differences in cerebrospinal venous drainage using transcranial and extracranial Doppler imaging (4-5). The discrepancies in the results may be explained with the absence of standardized internationally accepted criteria for normal Doppler venous flow parameters (2).

      We performed complete post-mortem examination of two patients with MS, died for different causes. One patient, a 74 year-old-woman, was hospitalized for acute respiratory illness and died because of bacterial pneumonia; the other one, a 35 year-old-woman, died for otogenic bacterial meningitis complicated with internal jugular thrombosis as demonstrated on MR venography.

      Postmortem examination demonstrated in both patients a marked stenosis of left internal jugular vein at the apex of the angle formed by the two heads of the sternocleidomastoid muscle where the IJV overlie the carotid artery with ectasia and congestion of the intracranial veins. Venous flow slowing, caused by the stenosis, had predisposed to IJV thrombosis, histologically demonstrated in the second case.

      Severe inflammatory disease may be a risk factor for deep venous thrombosis but also chronic cerebrospinal venous insufficiency. We demonstrate, for the first time as far as we are aware, the presence of anatomical alteration in the veins of the neck with impaired venous drainage from the central nervous system in two patients with multiple sclerosis who died from other causes.

      We do not know the exact implications in MS pathology and certainly there is no doubt that this area warrants a great deal more study. Clinical trials for evaluating new therapeutic agents and other clinical experimental protocols may be required.

      References: 1. Khan O, Tselis A. Chronic cerebrospinal venous insufficiency and multiple sclerosis: science or science fiction? J Neurol Neurosurg Psychiatry 2011;82:355. 2. Yamout B, Herlopian A, Issa Z Extracranial venous stenosis is an unlikely cause of multiple sclerosis Mult Scler 2010 16: 1341-9 3. Zamboni P, Galeotti R, Menegatti E, et al Chronic cerebrospinal venous insuffiency in patients with multiple sclerosis. J Neurol Neurosurg Psychiatry 2009;80:392-9. 4. Doepp F, Paul F, Valdueza JM, et al No cerebrocervical venous congestion in patients with multiple sclerosis. Ann Neurol 2010, 68:173-183. 5. Sundstrom P, Wahlin A, Ambarki K, et al Venous and cerebrospinal fluid flow in multiple sclerosis: a case-control study. Ann Neurol 2010, 68:255-259.

      Conflict of Interest: None declared

      Published 28 April 2011


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    1. On 2013 Oct 31, John Cannell commented:

      The authors stated that markers of oxidative stress are present in autism spectrum disorder (ASD). I wonder if the authors are aware that the genes for the antioxidants superoxide dismutase and thioredoxin reductase are directly up-regulated by the secosteroid 1,25 di-hydroxy vitamin D3 (calcitriol). I believe both genes also harbor a vitamin D response element.

      Peehl DM, Shinghal R, Nonn L, Seto E, Krishnan AV, Brooks JD, Feldman D. Molecular activity of 1,25‐dihydroxyvitamin D3 in primary cultures of human prostatic epithelial cells revealed by cDNA microarray analysis. J. Steroid Biochem Mol. Biol 2004;92:131–141. PMID:15555907>

      Calcitriol also directly up-regulates glutathione reductase and increases glutathione levels.

      Jain SK, et alo. Vitamin D upregulates glutamate cysteine ligase and glutathione reductase, and GSH formation, and decreases ROS and MCP-1 and IL-8 secretion in high-glucose exposed U937 monocytes. Biochem Biophys Res Commun. 2013 Jul 19;437(1):7-11. doi: 10.1016/j.bbrc.2013.06.004. Jain SK, 2013

      Also, supplemental vitamin D significantly reduces oxidative stress in humans.

      Nikooyeh B, et al. Daily intake of vitamin D- or calcium-vitamin D-fortified Persian yogurt drink (doogh) attenuates diabetes-induced oxidative stress: evidence for antioxidative properties of vitamin D.J Hum Nutr Diet. 2013 Jul 5. doi: 10.1111/jhn.12142. Nikooyeh B, 2014

      Asemi Z, et al. Vitamin D supplementation affects serum high-sensitivity C-reactive protein, insulin resistance, and biomarkers of oxidative stress in pregnant women. J Nutr. 2013 Sep;143(9):1432-8. doi: 10.3945/jn.113.177550. Asemi Z, 2013

      Thus the vitamin D theory of ASD (vitamin D deficiency being the environmental risk factor for this highly heritable disorder) is consistent with the authors work. Three recent studies, using community controls, have found 25(OH)D levels are significantly lower in children with ASD. Two of the studies below (Mostafa et al and Gong et al) also found ASD severity, as rated on standard ASD rating scales, is inversely correlated with 25(OH)D levels. Mostafa et al found an R value of -.86 for the association of serum 25(OH)D with ASD severity.

      Gong ZL, Luo CM, Wang L, Shen L, Wei F, Tong RJ, Liu Y. Serum 25-hydroxyvitamin D levels in Chinese children with autism spectrum disorders. Neuroreport. 2013 Oct 1. Gong ZL, 2014

      Meguid NA, Hashish AF, Anwar M, Sidhom G. Reduced serum levels of 25-hydroxy and 1,25-dihydroxy vitamin D in Egyptian children with autism. J Altern Complement Med. 2010 Jun;16(6):641-5. Meguid NA, 2010

      Mostafa GA, Al-Ayadhi LY.Reduced serum concentrations of 25-hydroxy vitamin D in children with autism: relation to autoimmunity. J Neuroinflammation. 2012 Aug 17;9:201. Mostafa GA, 2012

      There is a plethora of basic science explaining why low gestational or early childhood 25(OH)D levels would adversely effect brain development.

      Eyles DW, Feron F, Cui X, Kesby JP, Harms LH, Ko P, McGrath JJ, Burne TH. Developmental vitamin D deficiency causes abnormal brain development. Psychoneuroendocrinology. 2009 Dec;34 Suppl 1:S247-57. doi: 10.1016/j.psyneuen.2009.04.015. Epub . Review. Eyles DW, 2009

      DeLuca GC, Kimball SM, Kolasinski J, Ramagopalan SV, Ebers GC. Review: the role of vitamin D in nervous system health and disease. Neuropathol Appl Neurobiol. 2013 Aug;39(5):458-84. doi: 10.1111/nan.12020. DeLuca GC, 2013

      Eyles DW, Burne TH, McGrath JJ. Vitamin D, effects on brain development, adult brain function and the links between low levels of vitamin D and neuropsychiatric disease. Front Neuroendocrinol. 2013 Jan;34(1):47-64. doi: 10.1016/j.yfrne.2012.07.001. Epub 2012 Jul 11. Review. Eyles DW, 2013

      Furthermore, the vitamin D theory of autism explains most of the epidemiological facts of ASD.

      Cannell JJ. On the aetiology of autism. Acta Paediatr. 2010 Aug;99(8):1128-30. Cannell JJ, 2010

      Cannell JJ. Autism and vitamin D. Med Hypotheses. 2008;70(4):750-9. Cannell JJ, 2008

      70% of American toddlers do not take


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    1. On 2015 Sep 17, Tom Kindlon commented:

      This study uses the (so-called) empiric CFS criteria (Reeves et al., 2005)

      Although they don't make it very clear, this study used the Reeves et al. (2005) criteria(1) for defining Chronic Fatigue Syndrome (CFS) (sometimes described by the CDC as an operationalization of the Fukuda et al. (1994) criteria (2)). This can be seen by examining the Reeves et al. (2005) paper which shows that 43 people from the two-day study satisfied the Reeves et al. (2005) operationalization of the criteria which the number satisfying how they operationalized the Fukuda et al. criteria was considering less(1,2).

      These (Reeves) criteria greatly increased the prevalence of CFS. The "empirical" definition gives a prevalence rate of 2.54% of the adult population(3) compared to 0.235% (95% confidence interval, 0.142%-0.327%) and 0.422% (95% confidence interval, 0.29%-0.56%) when the Fukuda definition was used in previous population studies in the US(4,5).

      The definition lacks specificity. For example, one research study(6) found that 38% of those with a diagnosis of a Major Depressive Disorder were misclassified as having CFS using the empirical/Reeves definition. A letter of mine discussed my concerns in more detail(7).

      Due to the problems with the criteria, these criteria have not been used by researchers outside those contracted to analyse CDC data (apart from Leonard Jason's research team who studied it and showed problems with it (6)).

      References:

      1 Reeves WC, Wagner D, Nisenbaum R, Jones JF, Gurbaxani B, Solomon L, Papanicolaou DA, Unger ER, Vernon SD, Heim C. Chronic fatigue syndrome – a clinically empirical approach to its definition and study. BMC Med. 2005;3:19.

      2 Fukuda K, Straus SE, Hickie I, Sharpe MC, Dobbins JG, Komaroff A. The chronic fatigue syndrome; a comprehensive approach to its definition and study. Ann Int Med 1994, 121:953-959.

      3 Reeves WC, Jones JF, Maloney E, Heim C, Hoaglin DC, Boneva RS, Morrissey M, Devlin R. Prevalence of chronic fatigue syndrome in metropolitan, urban, and rural Georgia. Popul Health Metr. 2007 Jun 8;5:5.

      4 Reyes M, Nisenbaum R, Hoaglin DC, Unger ER, Emmons C, Randall B, Stewart JA, Abbey S, Jones JF, Gantz N, Minden S, Reeves WC: Prevalence and incidence of chronic fatigue syndrome in Wichita, Kansas. Arch Int Med 2003, 163:1530-1536.

      5 Jason LA, Richman JA, Rademaker AW, Jordan KM, Plioplys AV, Taylor RR, McCready W, Huang CF, Plioplys S. A community-based study of chronic fatigue syndrome. Arch Intern Med. 1999 Oct 11;159(18):2129-37.

      6 Jason, LA, Najar N, Porter N, Reh C. Evaluating the Centers for Disease Control's empirical chronic fatigue syndrome case definition. Journal of Disability Policy Studies 2008, doi:10.1177/1044207308325995.

      7 Kindlon T. Criteria used to define chronic fatigue syndrome questioned. Psychosom Med. 2010 Jun;72(5):506-7


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    1. On 2015 Aug 12, Tom Kindlon commented:

      This study uses the (so-called) empiric CFS criteria (Reeves et al., 2005)

      This study used the Reeves et al. (2005) criteria(1) for defining Chronic Fatigue Syndrome (CFS) (sometimes described by the CDC as an operationalization of the Fukuda et al. (1994) criteria (2)).

      These (Reeves) criteria greatly increased the prevalence of CFS. The "empirical" definition gives a prevalence rate of 2.54% of the adult population(3) compared to 0.235% (95% confidence interval, 0.142%-0.327%) and 0.422% (95% confidence interval, 0.29%-0.56%) when the Fukuda definition was used in previous population studies in the US(4,5).

      The definition lacks specificity. For example, one research study(6) found that 38% of those with a diagnosis of a Major Depressive Disorder were misclassified as having CFS using the empirical/Reeves definition. A letter of mine discussed my concerns in more detail(7).

      Due to the problems with the criteria, these criteria have not been used by researchers outside those contracted to analyse CDC data (apart from Leonard Jason's research team who studied it and showed problems with it (6)).

      References:

      1 Reeves WC, Wagner D, Nisenbaum R, Jones JF, Gurbaxani B, Solomon L, Papanicolaou DA, Unger ER, Vernon SD, Heim C. Chronic fatigue syndrome – a clinically empirical approach to its definition and study. BMC Med. 2005;3:19.

      2 Fukuda K, Straus SE, Hickie I, Sharpe MC, Dobbins JG, Komaroff A. The chronic fatigue syndrome; a comprehensive approach to its definition and study. Ann Int Med 1994, 121:953-959.

      3 Reeves WC, Jones JF, Maloney E, Heim C, Hoaglin DC, Boneva RS, Morrissey M, Devlin R. Prevalence of chronic fatigue syndrome in metropolitan, urban, and rural Georgia. Popul Health Metr. 2007 Jun 8;5:5.

      4 Reyes M, Nisenbaum R, Hoaglin DC, Unger ER, Emmons C, Randall B, Stewart JA, Abbey S, Jones JF, Gantz N, Minden S, Reeves WC: Prevalence and incidence of chronic fatigue syndrome in Wichita, Kansas. Arch Int Med 2003, 163:1530-1536.

      5 Jason LA, Richman JA, Rademaker AW, Jordan KM, Plioplys AV, Taylor RR, McCready W, Huang CF, Plioplys S. A community-based study of chronic fatigue syndrome. Arch Intern Med. 1999 Oct 11;159(18):2129-37.

      6 Jason, LA, Najar N, Porter N, Reh C. Evaluating the Centers for Disease Control's empirical chronic fatigue syndrome case definition. Journal of Disability Policy Studies 2008, doi:10.1177/1044207308325995.

      7 Kindlon T. Criteria used to define chronic fatigue syndrome questioned. Psychosom Med. 2010 Jun;72(5):506-7


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    1. On 2013 Oct 31, John Cannell commented:

      The authors stated that markers of oxidative stress are present in autism spectrum disorder (ASD). I wonder if the authors are aware that the genes for the antioxidants superoxide dismutase and thioredoxin reductase are directly up-regulated by the secosteroid 1,25 di-hydroxy vitamin D3 (calcitriol). I believe both genes also harbor a vitamin D response element.

      Peehl DM, Shinghal R, Nonn L, Seto E, Krishnan AV, Brooks JD, Feldman D. Molecular activity of 1,25‐dihydroxyvitamin D3 in primary cultures of human prostatic epithelial cells revealed by cDNA microarray analysis. J. Steroid Biochem Mol. Biol 2004;92:131–141. PMID:15555907>

      Calcitriol also directly up-regulates glutathione reductase and increases glutathione levels.

      Jain SK, et alo. Vitamin D upregulates glutamate cysteine ligase and glutathione reductase, and GSH formation, and decreases ROS and MCP-1 and IL-8 secretion in high-glucose exposed U937 monocytes. Biochem Biophys Res Commun. 2013 Jul 19;437(1):7-11. doi: 10.1016/j.bbrc.2013.06.004. Jain SK, 2013

      Also, supplemental vitamin D significantly reduces oxidative stress in humans.

      Nikooyeh B, et al. Daily intake of vitamin D- or calcium-vitamin D-fortified Persian yogurt drink (doogh) attenuates diabetes-induced oxidative stress: evidence for antioxidative properties of vitamin D.J Hum Nutr Diet. 2013 Jul 5. doi: 10.1111/jhn.12142. Nikooyeh B, 2014

      Asemi Z, et al. Vitamin D supplementation affects serum high-sensitivity C-reactive protein, insulin resistance, and biomarkers of oxidative stress in pregnant women. J Nutr. 2013 Sep;143(9):1432-8. doi: 10.3945/jn.113.177550. Asemi Z, 2013

      Thus the vitamin D theory of ASD (vitamin D deficiency being the environmental risk factor for this highly heritable disorder) is consistent with the authors work. Three recent studies, using community controls, have found 25(OH)D levels are significantly lower in children with ASD. Two of the studies below (Mostafa et al and Gong et al) also found ASD severity, as rated on standard ASD rating scales, is inversely correlated with 25(OH)D levels. Mostafa et al found an R value of -.86 for the association of serum 25(OH)D with ASD severity.

      Gong ZL, Luo CM, Wang L, Shen L, Wei F, Tong RJ, Liu Y. Serum 25-hydroxyvitamin D levels in Chinese children with autism spectrum disorders. Neuroreport. 2013 Oct 1. Gong ZL, 2014

      Meguid NA, Hashish AF, Anwar M, Sidhom G. Reduced serum levels of 25-hydroxy and 1,25-dihydroxy vitamin D in Egyptian children with autism. J Altern Complement Med. 2010 Jun;16(6):641-5. Meguid NA, 2010

      Mostafa GA, Al-Ayadhi LY.Reduced serum concentrations of 25-hydroxy vitamin D in children with autism: relation to autoimmunity. J Neuroinflammation. 2012 Aug 17;9:201. Mostafa GA, 2012

      There is a plethora of basic science explaining why low gestational or early childhood 25(OH)D levels would adversely effect brain development.

      Eyles DW, Feron F, Cui X, Kesby JP, Harms LH, Ko P, McGrath JJ, Burne TH. Developmental vitamin D deficiency causes abnormal brain development. Psychoneuroendocrinology. 2009 Dec;34 Suppl 1:S247-57. doi: 10.1016/j.psyneuen.2009.04.015. Epub . Review. Eyles DW, 2009

      DeLuca GC, Kimball SM, Kolasinski J, Ramagopalan SV, Ebers GC. Review: the role of vitamin D in nervous system health and disease. Neuropathol Appl Neurobiol. 2013 Aug;39(5):458-84. doi: 10.1111/nan.12020. DeLuca GC, 2013

      Eyles DW, Burne TH, McGrath JJ. Vitamin D, effects on brain development, adult brain function and the links between low levels of vitamin D and neuropsychiatric disease. Front Neuroendocrinol. 2013 Jan;34(1):47-64. doi: 10.1016/j.yfrne.2012.07.001. Epub 2012 Jul 11. Review. Eyles DW, 2013

      Furthermore, the vitamin D theory of autism explains most of the epidemiological facts of ASD.

      Cannell JJ. On the aetiology of autism. Acta Paediatr. 2010 Aug;99(8):1128-30. Cannell JJ, 2010

      Cannell JJ. Autism and vitamin D. Med Hypotheses. 2008;70(4):750-9. Cannell JJ, 2008

      70% of American toddlers do not take


      This comment, imported by Hypothesis from PubMed Commons, is licensed under CC BY.

    1. On 2013 Oct 31, John Cannell commented:

      The authors found markers oxidative stress is present in autism spectrum disorder (ASD). I wonder if the authors are aware that the genes for the antioxidants superoxide dismutase and thioredoxin reductase are directly up-regulated by the secosteroid 1,25 di-hydroxy vitamin D3 (calcitriol). I believe both genes also harbor a vitamin D response element.

      Peehl DM, Shinghal R, Nonn L, Seto E, Krishnan AV, Brooks JD, Feldman D. Molecular activity of 1,25‐dihydroxyvitamin D3 in primary cultures of human prostatic epithelial cells revealed by cDNA microarray analysis. J. Steroid Biochem Mol. Biol 2004;92:131–141. PMID:15555907>

      Calcitriol also directly up-regulates glutathione reductase and increases glutathione levels.

      Jain SK, et alo. Vitamin D upregulates glutamate cysteine ligase and glutathione reductase, and GSH formation, and decreases ROS and MCP-1 and IL-8 secretion in high-glucose exposed U937 monocytes. Biochem Biophys Res Commun. 2013 Jul 19;437(1):7-11. doi: 10.1016/j.bbrc.2013.06.004. Jain SK, 2013

      Also, supplemental vitamin D significantly reduces oxidative stress in humans.

      Nikooyeh B, et al. Daily intake of vitamin D- or calcium-vitamin D-fortified Persian yogurt drink (doogh) attenuates diabetes-induced oxidative stress: evidence for antioxidative properties of vitamin D.J Hum Nutr Diet. 2013 Jul 5. doi: 10.1111/jhn.12142. Nikooyeh B, 2014

      Asemi Z, et al. Vitamin D supplementation affects serum high-sensitivity C-reactive protein, insulin resistance, and biomarkers of oxidative stress in pregnant women. J Nutr. 2013 Sep;143(9):1432-8. doi: 10.3945/jn.113.177550. Asemi Z, 2013

      Thus the vitamin D theory of ASD (vitamin D deficiency being the environmental risk factor for this highly heritable disorder) is consistent with the authors work. Three recent studies, using community controls, have found 25(OH)D levels are significantly lower in children with ASD. Two of the studies below (Mostafa et al and Gong et al) also found ASD severity, as rated on standard ASD rating scales, is inversely correlated with 25(OH)D levels. Mostafa et al found an R value of -.86 for the association of serum 25(OH)D with ASD severity.

      Gong ZL, Luo CM, Wang L, Shen L, Wei F, Tong RJ, Liu Y. Serum 25-hydroxyvitamin D levels in Chinese children with autism spectrum disorders. Neuroreport. 2013 Oct 1. Gong ZL, 2014

      Meguid NA, Hashish AF, Anwar M, Sidhom G. Reduced serum levels of 25-hydroxy and 1,25-dihydroxy vitamin D in Egyptian children with autism. J Altern Complement Med. 2010 Jun;16(6):641-5. Meguid NA, 2010

      Mostafa GA, Al-Ayadhi LY.Reduced serum concentrations of 25-hydroxy vitamin D in children with autism: relation to autoimmunity. J Neuroinflammation. 2012 Aug 17;9:201. Mostafa GA, 2012

      There is a plethora of basic science explaining why low gestational or early childhood 25(OH)D levels would adversely effect brain development.

      Eyles DW, Feron F, Cui X, Kesby JP, Harms LH, Ko P, McGrath JJ, Burne TH. Developmental vitamin D deficiency causes abnormal brain development. Psychoneuroendocrinology. 2009 Dec;34 Suppl 1:S247-57. doi: 10.1016/j.psyneuen.2009.04.015. Epub . Review. Eyles DW, 2009

      DeLuca GC, Kimball SM, Kolasinski J, Ramagopalan SV, Ebers GC. Review: the role of vitamin D in nervous system health and disease. Neuropathol Appl Neurobiol. 2013 Aug;39(5):458-84. doi: 10.1111/nan.12020. DeLuca GC, 2013

      Eyles DW, Burne TH, McGrath JJ. Vitamin D, effects on brain development, adult brain function and the links between low levels of vitamin D and neuropsychiatric disease. Front Neuroendocrinol. 2013 Jan;34(1):47-64. doi: 10.1016/j.yfrne.2012.07.001. Epub 2012 Jul 11. Review. Eyles DW, 2013

      Furthermore, the vitamin D theory of autism explains most of the epidemiological facts of ASD.

      Cannell JJ. On the aetiology of autism. Acta Paediatr. 2010 Aug;99(8):1128-30. Cannell JJ, 2010

      Cannell JJ. Autism and vitamin D. Med Hypotheses. 2008;70(4):750-9. Cannell JJ, 2008

      70% of American toddlers do not take the Ameri


      This comment, imported by Hypothesis from PubMed Commons, is licensed under CC BY.

    1. On 2013 Oct 31, John Cannell commented:

      The authors found markers oxidative stress is present in autism spectrum disorder (ASD). I wonder if the authors are aware that the genes for the antioxidants superoxide dismutase and thioredoxin reductase are directly up-regulated by the secosteroid 1,25 di-hydroxy vitamin D3 (calcitriol). I believe both genes also harbor a vitamin D response element.

      Peehl DM, Shinghal R, Nonn L, Seto E, Krishnan AV, Brooks JD, Feldman D. Molecular activity of 1,25‐dihydroxyvitamin D3 in primary cultures of human prostatic epithelial cells revealed by cDNA microarray analysis. J. Steroid Biochem Mol. Biol 2004;92:131–141. PMID:15555907>

      Calcitriol also directly up-regulates glutathione reductase and increases glutathione levels.

      Jain SK, et alo. Vitamin D upregulates glutamate cysteine ligase and glutathione reductase, and GSH formation, and decreases ROS and MCP-1 and IL-8 secretion in high-glucose exposed U937 monocytes. Biochem Biophys Res Commun. 2013 Jul 19;437(1):7-11. doi: 10.1016/j.bbrc.2013.06.004. Jain SK, 2013

      Also, supplemental vitamin D significantly reduces oxidative stress in humans.

      Nikooyeh B, et al. Daily intake of vitamin D- or calcium-vitamin D-fortified Persian yogurt drink (doogh) attenuates diabetes-induced oxidative stress: evidence for antioxidative properties of vitamin D.J Hum Nutr Diet. 2013 Jul 5. doi: 10.1111/jhn.12142. Nikooyeh B, 2014

      Asemi Z, et al. Vitamin D supplementation affects serum high-sensitivity C-reactive protein, insulin resistance, and biomarkers of oxidative stress in pregnant women. J Nutr. 2013 Sep;143(9):1432-8. doi: 10.3945/jn.113.177550. Asemi Z, 2013

      Thus the vitamin D theory of ASD (vitamin D deficiency being the environmental risk factor for this highly heritable disorder) is consistent with the authors work. Three recent studies, using community controls, have found 25(OH)D levels are significantly lower in children with ASD. Two of the studies below (Mostafa et al and Gong et al) also found ASD severity, as rated on standard ASD rating scales, is inversely correlated with 25(OH)D levels. Mostafa et al found an R value of -.86 for the association of serum 25(OH)D with ASD severity.

      Gong ZL, Luo CM, Wang L, Shen L, Wei F, Tong RJ, Liu Y. Serum 25-hydroxyvitamin D levels in Chinese children with autism spectrum disorders. Neuroreport. 2013 Oct 1. Gong ZL, 2014

      Meguid NA, Hashish AF, Anwar M, Sidhom G. Reduced serum levels of 25-hydroxy and 1,25-dihydroxy vitamin D in Egyptian children with autism. J Altern Complement Med. 2010 Jun;16(6):641-5. Meguid NA, 2010

      Mostafa GA, Al-Ayadhi LY.Reduced serum concentrations of 25-hydroxy vitamin D in children with autism: relation to autoimmunity. J Neuroinflammation. 2012 Aug 17;9:201. Mostafa GA, 2012

      There is a plethora of basic science explaining why low gestational or early childhood 25(OH)D levels would adversely effect brain development.

      Eyles DW, Feron F, Cui X, Kesby JP, Harms LH, Ko P, McGrath JJ, Burne TH. Developmental vitamin D deficiency causes abnormal brain development. Psychoneuroendocrinology. 2009 Dec;34 Suppl 1:S247-57. doi: 10.1016/j.psyneuen.2009.04.015. Epub . Review. Eyles DW, 2009

      DeLuca GC, Kimball SM, Kolasinski J, Ramagopalan SV, Ebers GC. Review: the role of vitamin D in nervous system health and disease. Neuropathol Appl Neurobiol. 2013 Aug;39(5):458-84. doi: 10.1111/nan.12020. DeLuca GC, 2013

      Eyles DW, Burne TH, McGrath JJ. Vitamin D, effects on brain development, adult brain function and the links between low levels of vitamin D and neuropsychiatric disease. Front Neuroendocrinol. 2013 Jan;34(1):47-64. doi: 10.1016/j.yfrne.2012.07.001. Epub 2012 Jul 11. Review. Eyles DW, 2013

      Furthermore, the vitamin D theory of autism explains most of the epidemiological facts of ASD.

      Cannell JJ. On the aetiology of autism. Acta Paediatr. 2010 Aug;99(8):1128-30. Cannell JJ, 2010

      Cannell JJ. Autism and vitamin D. Med Hypotheses. 2008;70(4):750-9. Cannell JJ, 2008

      70% of American toddlers do not take the Ameri


      This comment, imported by Hypothesis from PubMed Commons, is licensed under CC BY.

    1. On 2017 Aug 15, Andrea Messori commented:

      Pearl-I trial: incremental benefit between patients treated with ulipristal 5 mg/day and those receiving placebo

      Andrea Messori, HTA Unit, Regional Health Service, 50100 Firenze, Italy

      In the Pearl-I trial [1], women with symptomatic fibroids, excessive uterine bleeding (PBAC score>100) and anemia were randomized to receive oral ulipristal (dose: 5 mg/day for 13 weeks) or placebo (48 women). A third arm received 10 mg/day of ulipristal. In the comparison between ulipristal 5 mg/day and placebo, the end point of controlled uterine bleeding (PBAC score<75) was achieved by 91% of the patients in the treatment group vs 19% in the controls receiving placebo. Figure 2 (Panel A) of the article by Donnez et al.[1] shows the time-to-event curve for treated patients and controls. Nagy et al.[2] have estimated that the value of utility is around 0.83 for patients with mild-to-moderate bleeding vs 0.72 for patients with severe bleeding (see Table 3 of Nagy’s article). We have carried out an analysis of the results of the Pearl-I trial in order to estimate the magnitude of the incremental benefit between patients treated with ulipristal 5 mg/day and those receiving placebo by expressing this benefit in quality-adjusted life years (QALYs). For this purpose, we employed a statistical tool (WebPlotDigitizer program) with which we analyzed the time-to-event curves reported in Figure 2 Panel A of the Pearl-I trial (time interval: from 0 to 100 days). As regards the ulipristal group, this statistical program estimated an average of 77.38 days per patient after achievement of the end-point vs 22.62 days per patient without achievement of the end-point. Likewise, in the control group there were on average 13.30 days per patient after achievement of the end-point vs 86.70 days per patient without achievement of the end-point. Using the two values of utility previously mentioned, these figures generated the following estimates of quality-adjusted survival: 80.51 quality adjusted days per patient in the treatment group (i.e. 0.22058 QALYs) and 73.46 quality adjusted days per patient in the control group (i.e. 0.20127 QALYs). The difference between these two QALY values yields 0.01931 QALYs per patient (around 7 quality-adjusted days per patient), which represents the incremental benefit between patients treated with ulipristal 5 mg/day and those receiving placebo.

      References

      [1] Donnez J, Tatarchuk TF, Bouchard P, Puscasiu L, Zakharenko NF, Ivanova T, Ugocsai G, Mara M, Jilla MP, Bestel E, Terrill P, Osterloh I, Loumaye E; PEARL I Study Group. Ulipristal acetate versus placebo for fibroid treatment before surgery. N Engl J Med. 2012 Feb 2;366(5):409-20.

      [2] Nagy B, Timár G, Józwiak-Hagymásy J, Kovács G, Merész G, Vámossy I, Ágh T, László Á, Vokó Z, Kaló Z. The cost-effectiveness of ulipristal acetate tablets in treating patients with moderate to severe symptoms of uterine fibroids. Eur J Obstet Gynecol Reprod Biol. 2014 Apr;175:75-81.

      [3] Rohatgi A. WebPlotDigitizer, Version: 3.12, Austin, Texas, available at http://arohatgi.info/WebPlotDigitizer, last accessed 15 August 2017


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    1. On 2015 Sep 17, Tom Kindlon commented:

      This study uses the (so-called) empiric CFS criteria (Reeves et al., 2005)

      This study used the Reeves et al. (2005) criteria(1) for defining Chronic Fatigue Syndrome (CFS) (sometimes described by the CDC as an operationalization of the Fukuda et al. (1994) criteria (2)).

      These (Reeves) criteria greatly increased the prevalence of CFS. The "empirical" definition gives a prevalence rate of 2.54% of the adult population(3) compared to 0.235% (95% confidence interval, 0.142%-0.327%) and 0.422% (95% confidence interval, 0.29%-0.56%) when the Fukuda definition was used in previous population studies in the US(4,5).

      The definition lacks specificity. For example, one research study(6) found that 38% of those with a diagnosis of a Major Depressive Disorder were misclassified as having CFS using the empirical/Reeves definition. A letter of mine discussed my concerns in more detail(7).

      Due to the problems with the criteria, these criteria have not been used by researchers outside those contracted to analyse CDC data (apart from Leonard Jason's research team who studied it and showed problems with it (6)).

      References:

      1 Reeves WC, Wagner D, Nisenbaum R, Jones JF, Gurbaxani B, Solomon L, Papanicolaou DA, Unger ER, Vernon SD, Heim C. Chronic fatigue syndrome – a clinically empirical approach to its definition and study. BMC Med. 2005;3:19.

      2 Fukuda K, Straus SE, Hickie I, Sharpe MC, Dobbins JG, Komaroff A. The chronic fatigue syndrome; a comprehensive approach to its definition and study. Ann Int Med 1994, 121:953-959.

      3 Reeves WC, Jones JF, Maloney E, Heim C, Hoaglin DC, Boneva RS, Morrissey M, Devlin R. Prevalence of chronic fatigue syndrome in metropolitan, urban, and rural Georgia. Popul Health Metr. 2007 Jun 8;5:5.

      4 Reyes M, Nisenbaum R, Hoaglin DC, Unger ER, Emmons C, Randall B, Stewart JA, Abbey S, Jones JF, Gantz N, Minden S, Reeves WC: Prevalence and incidence of chronic fatigue syndrome in Wichita, Kansas. Arch Int Med 2003, 163:1530-1536.

      5 Jason LA, Richman JA, Rademaker AW, Jordan KM, Plioplys AV, Taylor RR, McCready W, Huang CF, Plioplys S. A community-based study of chronic fatigue syndrome. Arch Intern Med. 1999 Oct 11;159(18):2129-37.

      6 Jason, LA, Najar N, Porter N, Reh C. Evaluating the Centers for Disease Control's empirical chronic fatigue syndrome case definition. Journal of Disability Policy Studies 2008, doi:10.1177/1044207308325995.

      7 Kindlon T. Criteria used to define chronic fatigue syndrome questioned. Psychosom Med. 2010 Jun;72(5):506-7


      This comment, imported by Hypothesis from PubMed Commons, is licensed under CC BY.

    1. On 2013 Oct 29, Tom Kindlon commented:

      Findings may be relevant for some patients diagnosed with myalgic encephalomyelitis or chronic fatigue syndrome

      I would like to thank the authors for taking the time to write up this case report, as well as thanking the patient for giving permission for the use of her story.

      I thought it was worth pointing out that the symptoms described by the authors and the patient would be quite similar to the symptoms patients with myalgic encephalomyelitis (ME) or chronic fatigue syndrome (CFS) would report.<sup>1-7</sup> I don't believe patients with an ME or CFS diagnosis are often assessed for a mitochondrial myopathy using the tests mentioned although a novel test did find evidence for mitochondrial dysfunction.<sup>8</sup> At least two studies have found carnitine supplementation to be of benefit in patients diagnosed with CFS.<sup>9,10</sup>

      Excessive acidosis on exercise has been found in patients.<sup>11,12</sup> One study, looking for an association with enterovirus infection, found that 58% of CFS patients had an abnormal lactate response to subanaerobic threshold exercise test.<sup>13</sup>

      CFS is increasingly recoognized as being heterogeneous.<sup>14</sup> Despite its name, more symptoms than fatigue are generally associated with it.<sup>15</sup> Mitochondrial problems could relevant for some patients even if they may not be relevant for all patients.

      References:

      (1) Fukuda K, Straus SE, Hickie I, Sharpe MC, Dobbins JG, Komaroff A. The chronic fatigue syndrome: A comprehensive approach to its definition and study. Annals of Internal Medicine. 1994;121:953-959.

      (2) Sharpe MC, Archard LC, Banatvala JE, et al. A report--chronic fatigue syndrome: guidelines for research. J R Soc Med. 1991 Feb;84(2):118-21.

      (3) Carruthers B, Jain A, de Meirleir K, Peterson D, Klimas N, Lemer A, et al.: Myalgic encephalomyelitis/chronic fatigue syndrome: clinical working case definition, diagnostic and treatment protocols. J Chronic Fatigue Syndrome 2003;11(1):7-33

      (4) Holmes GP, Kaplan JE, Gantz NM, et al. Chronic fatigue syndrome: a working case definition. Ann Intern Med. 1988 Mar;108(3):387-9.

      (5) Jason LA, Evans M, Porter N, et al. The development of a revised Canadian Myalgic Encephalomyelitis-Chronic Fatigue Syndrome case definition. American Journal of Biochemistry and Biotechnology. 2010:6;120–135. Retrieved from http://www.scipub.org/fulltext/ajbb/ajbb62120-135.pdf

      (6) Carruthers BM, van de Sande MI, De Meirleir KL, et al. Myalgic Encephalomyelitis: International Consensus Criteria. J Intern Med. 2011 Jul 20. doi: 10.1111/j.1365- 2796.2011.02428.x. [Epub ahead of print]

      (7) Goudsmit EM, Shepherd C, Dancey CP, Howes S. ME: Chronic fatigue syndrome or a distinct clinical entity? Health Psychology Update, 2009, 18, 1, 26-33.

      (8) Myhill S, Booth NE, McLaren-Howard J. Chronic fatigue syndrome and mitochondrial dysfunction. Int J Clin Exp Med. 2009;2(1):1-16. Epub 2009 Jan 15.

      (9) Vermeulen RC, Scholte HR. Exploratory open label, randomized study of acetyl- and propionylcarnitine in chronic fatigue syndrome. Psychosom Med. 2004 Mar-Apr;66(2):276-82.

      (10) Plioplys AV, Plioplys S. Amantadine and L-carnitine treatment of Chronic Fatigue Syndrome. Neuropsychobiology. 1997;35(1):16-23.

      (11) Arnold DL, Bore PJ, Radda GK, Styles P, Taylor DJ. Excessive intracellular acidosis of skeletal muscle on exercise in a patient with a post-viral exhaustion/fatigue syndrome. A 31P nuclear magnetic resonance study. Lancet. 1984 Jun 23;1(8391):1367-9.

      (12) Jones DE, Hollingsworth KG, Jakovljevic DG, Fattakhova G, Pairman J, Blamire AM, Trenell MI, Newton JL. Loss of capacity to recover from acidosis on repeat exercise in chronic fatigue syndrome: a case-control study. Eur J Clin Invest. 2012 Feb;42(2):186-94.

      (13) Lane RJ, Soteriou BA, Zhang H, Archard LC. Enterovirus related metabolic myopathy: a postviral fatigue syndrome. J Neurol Neurosurg Psychiatry. 2003 Oct;74(10):1382-6.

      (14) Jason, L.A., Corradi, K., Torres-Harding, S., Tay


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    1. On 2013 Oct 31, John Cannell commented:

      The authors stated that markers of oxidative stress are present in autism spectrum disorder (ASD). I wonder if the authors are aware that the genes for the antioxidants superoxide dismutase and thioredoxin reductase are directly up-regulated by the secosteroid 1,25 di-hydroxy vitamin D3 (calcitriol). I believe both genes also harbor a vitamin D response element.

      Peehl DM, Shinghal R, Nonn L, Seto E, Krishnan AV, Brooks JD, Feldman D. Molecular activity of 1,25‐dihydroxyvitamin D3 in primary cultures of human prostatic epithelial cells revealed by cDNA microarray analysis. J. Steroid Biochem Mol. Biol 2004;92:131–141. PMID:15555907>

      Calcitriol also directly up-regulates glutathione reductase and increases glutathione levels.

      Jain SK, et alo. Vitamin D upregulates glutamate cysteine ligase and glutathione reductase, and GSH formation, and decreases ROS and MCP-1 and IL-8 secretion in high-glucose exposed U937 monocytes. Biochem Biophys Res Commun. 2013 Jul 19;437(1):7-11. doi: 10.1016/j.bbrc.2013.06.004. Jain SK, 2013

      Also, supplemental vitamin D significantly reduces oxidative stress in humans.

      Nikooyeh B, et al. Daily intake of vitamin D- or calcium-vitamin D-fortified Persian yogurt drink (doogh) attenuates diabetes-induced oxidative stress: evidence for antioxidative properties of vitamin D.J Hum Nutr Diet. 2013 Jul 5. doi: 10.1111/jhn.12142. Nikooyeh B, 2014

      Asemi Z, et al. Vitamin D supplementation affects serum high-sensitivity C-reactive protein, insulin resistance, and biomarkers of oxidative stress in pregnant women. J Nutr. 2013 Sep;143(9):1432-8. doi: 10.3945/jn.113.177550. Asemi Z, 2013

      Thus the vitamin D theory of ASD (vitamin D deficiency being the environmental risk factor for this highly heritable disorder) is consistent with the authors work. Three recent studies, using community controls, have found 25(OH)D levels are significantly lower in children with ASD. Two of the studies below (Mostafa et al and Gong et al) also found ASD severity, as rated on standard ASD rating scales, is inversely correlated with 25(OH)D levels. Mostafa et al found an R value of -.86 for the association of serum 25(OH)D with ASD severity.

      Gong ZL, Luo CM, Wang L, Shen L, Wei F, Tong RJ, Liu Y. Serum 25-hydroxyvitamin D levels in Chinese children with autism spectrum disorders. Neuroreport. 2013 Oct 1. Gong ZL, 2014

      Meguid NA, Hashish AF, Anwar M, Sidhom G. Reduced serum levels of 25-hydroxy and 1,25-dihydroxy vitamin D in Egyptian children with autism. J Altern Complement Med. 2010 Jun;16(6):641-5. Meguid NA, 2010

      Mostafa GA, Al-Ayadhi LY.Reduced serum concentrations of 25-hydroxy vitamin D in children with autism: relation to autoimmunity. J Neuroinflammation. 2012 Aug 17;9:201. Mostafa GA, 2012

      There is a plethora of basic science explaining why low gestational or early childhood 25(OH)D levels would adversely effect brain development.

      Eyles DW, Feron F, Cui X, Kesby JP, Harms LH, Ko P, McGrath JJ, Burne TH. Developmental vitamin D deficiency causes abnormal brain development. Psychoneuroendocrinology. 2009 Dec;34 Suppl 1:S247-57. doi: 10.1016/j.psyneuen.2009.04.015. Epub . Review. Eyles DW, 2009

      DeLuca GC, Kimball SM, Kolasinski J, Ramagopalan SV, Ebers GC. Review: the role of vitamin D in nervous system health and disease. Neuropathol Appl Neurobiol. 2013 Aug;39(5):458-84. doi: 10.1111/nan.12020. DeLuca GC, 2013

      Eyles DW, Burne TH, McGrath JJ. Vitamin D, effects on brain development, adult brain function and the links between low levels of vitamin D and neuropsychiatric disease. Front Neuroendocrinol. 2013 Jan;34(1):47-64. doi: 10.1016/j.yfrne.2012.07.001. Epub 2012 Jul 11. Review. Eyles DW, 2013

      Furthermore, the vitamin D theory of autism explains most of the epidemiological facts of ASD.

      Cannell JJ. On the aetiology of autism. Acta Paediatr. 2010 Aug;99(8):1128-30. Cannell JJ, 2010

      Cannell JJ. Autism and vitamin D. Med Hypotheses. 2008;70(4):750-9. Cannell JJ, 2008

      70% of American toddlers do not take


      This comment, imported by Hypothesis from PubMed Commons, is licensed under CC BY.

    1. On 2013 Oct 31, John Cannell commented:

      The authors stated that markers of oxidative stress are present in autism spectrum disorder (ASD). I wonder if the authors are aware that the genes for the antioxidants superoxide dismutase and thioredoxin reductase are directly up-regulated by the secosteroid 1,25 di-hydroxy vitamin D3 (calcitriol). I believe both genes also harbor a vitamin D response element.

      Peehl DM, Shinghal R, Nonn L, Seto E, Krishnan AV, Brooks JD, Feldman D. Molecular activity of 1,25‐dihydroxyvitamin D3 in primary cultures of human prostatic epithelial cells revealed by cDNA microarray analysis. J. Steroid Biochem Mol. Biol 2004;92:131–141. PMID:15555907>

      Calcitriol also directly up-regulates glutathione reductase and increases glutathione levels.

      Jain SK, et alo. Vitamin D upregulates glutamate cysteine ligase and glutathione reductase, and GSH formation, and decreases ROS and MCP-1 and IL-8 secretion in high-glucose exposed U937 monocytes. Biochem Biophys Res Commun. 2013 Jul 19;437(1):7-11. doi: 10.1016/j.bbrc.2013.06.004. Jain SK, 2013

      Also, supplemental vitamin D significantly reduces oxidative stress in humans.

      Nikooyeh B, et al. Daily intake of vitamin D- or calcium-vitamin D-fortified Persian yogurt drink (doogh) attenuates diabetes-induced oxidative stress: evidence for antioxidative properties of vitamin D.J Hum Nutr Diet. 2013 Jul 5. doi: 10.1111/jhn.12142. Nikooyeh B, 2014

      Asemi Z, et al. Vitamin D supplementation affects serum high-sensitivity C-reactive protein, insulin resistance, and biomarkers of oxidative stress in pregnant women. J Nutr. 2013 Sep;143(9):1432-8. doi: 10.3945/jn.113.177550. Asemi Z, 2013

      Thus the vitamin D theory of ASD (vitamin D deficiency being the environmental risk factor for this highly heritable disorder) is consistent with the authors work. Three recent studies, using community controls, have found 25(OH)D levels are significantly lower in children with ASD. Two of the studies below (Mostafa et al and Gong et al) also found ASD severity, as rated on standard ASD rating scales, is inversely correlated with 25(OH)D levels. Mostafa et al found an R value of -.86 for the association of serum 25(OH)D with ASD severity.

      Gong ZL, Luo CM, Wang L, Shen L, Wei F, Tong RJ, Liu Y. Serum 25-hydroxyvitamin D levels in Chinese children with autism spectrum disorders. Neuroreport. 2013 Oct 1. Gong ZL, 2014

      Meguid NA, Hashish AF, Anwar M, Sidhom G. Reduced serum levels of 25-hydroxy and 1,25-dihydroxy vitamin D in Egyptian children with autism. J Altern Complement Med. 2010 Jun;16(6):641-5. Meguid NA, 2010

      Mostafa GA, Al-Ayadhi LY.Reduced serum concentrations of 25-hydroxy vitamin D in children with autism: relation to autoimmunity. J Neuroinflammation. 2012 Aug 17;9:201. Mostafa GA, 2012

      There is a plethora of basic science explaining why low gestational or early childhood 25(OH)D levels would adversely effect brain development.

      Eyles DW, Feron F, Cui X, Kesby JP, Harms LH, Ko P, McGrath JJ, Burne TH. Developmental vitamin D deficiency causes abnormal brain development. Psychoneuroendocrinology. 2009 Dec;34 Suppl 1:S247-57. doi: 10.1016/j.psyneuen.2009.04.015. Epub . Review. Eyles DW, 2009

      DeLuca GC, Kimball SM, Kolasinski J, Ramagopalan SV, Ebers GC. Review: the role of vitamin D in nervous system health and disease. Neuropathol Appl Neurobiol. 2013 Aug;39(5):458-84. doi: 10.1111/nan.12020. DeLuca GC, 2013

      Eyles DW, Burne TH, McGrath JJ. Vitamin D, effects on brain development, adult brain function and the links between low levels of vitamin D and neuropsychiatric disease. Front Neuroendocrinol. 2013 Jan;34(1):47-64. doi: 10.1016/j.yfrne.2012.07.001. Epub 2012 Jul 11. Review. Eyles DW, 2013

      Furthermore, the vitamin D theory of autism explains most of the epidemiological facts of ASD.

      Cannell JJ. On the aetiology of autism. Acta Paediatr. 2010 Aug;99(8):1128-30. Cannell JJ, 2010

      Cannell JJ. Autism and vitamin D. Med Hypotheses. 2008;70(4):750-9. Cannell JJ, 2008

      70% of American toddlers do not take


      This comment, imported by Hypothesis from PubMed Commons, is licensed under CC BY.

    1. On 2013 Oct 31, John Cannell commented:

      The authors found markers oxidative stress is present in autism spectrum disorder (ASD). I wonder if the authors are aware that the genes for the antioxidants superoxide dismutase and thioredoxin reductase are directly up-regulated by the secosteroid 1,25 di-hydroxy vitamin D3 (calcitriol). I believe both genes also harbor a vitamin D response element.

      Peehl DM, Shinghal R, Nonn L, Seto E, Krishnan AV, Brooks JD, Feldman D. Molecular activity of 1,25‐dihydroxyvitamin D3 in primary cultures of human prostatic epithelial cells revealed by cDNA microarray analysis. J. Steroid Biochem Mol. Biol 2004;92:131–141. PMID:15555907>

      Calcitriol also directly up-regulates glutathione reductase and increases glutathione levels.

      Jain SK, et alo. Vitamin D upregulates glutamate cysteine ligase and glutathione reductase, and GSH formation, and decreases ROS and MCP-1 and IL-8 secretion in high-glucose exposed U937 monocytes. Biochem Biophys Res Commun. 2013 Jul 19;437(1):7-11. doi: 10.1016/j.bbrc.2013.06.004. Jain SK, 2013

      Also, supplemental vitamin D significantly reduces oxidative stress in humans.

      Nikooyeh B, et al. Daily intake of vitamin D- or calcium-vitamin D-fortified Persian yogurt drink (doogh) attenuates diabetes-induced oxidative stress: evidence for antioxidative properties of vitamin D.J Hum Nutr Diet. 2013 Jul 5. doi: 10.1111/jhn.12142. Nikooyeh B, 2014

      Asemi Z, et al. Vitamin D supplementation affects serum high-sensitivity C-reactive protein, insulin resistance, and biomarkers of oxidative stress in pregnant women. J Nutr. 2013 Sep;143(9):1432-8. doi: 10.3945/jn.113.177550. Asemi Z, 2013

      Thus the vitamin D theory of ASD (vitamin D deficiency being the environmental risk factor for this highly heritable disorder) is consistent with the authors work. Three recent studies, using community controls, have found 25(OH)D levels are significantly lower in children with ASD. Two of the studies below (Mostafa et al and Gong et al) also found ASD severity, as rated on standard ASD rating scales, is inversely correlated with 25(OH)D levels. Mostafa et al found an R value of -.86 for the association of serum 25(OH)D with ASD severity.

      Gong ZL, Luo CM, Wang L, Shen L, Wei F, Tong RJ, Liu Y. Serum 25-hydroxyvitamin D levels in Chinese children with autism spectrum disorders. Neuroreport. 2013 Oct 1. Gong ZL, 2014

      Meguid NA, Hashish AF, Anwar M, Sidhom G. Reduced serum levels of 25-hydroxy and 1,25-dihydroxy vitamin D in Egyptian children with autism. J Altern Complement Med. 2010 Jun;16(6):641-5. Meguid NA, 2010

      Mostafa GA, Al-Ayadhi LY.Reduced serum concentrations of 25-hydroxy vitamin D in children with autism: relation to autoimmunity. J Neuroinflammation. 2012 Aug 17;9:201. Mostafa GA, 2012

      There is a plethora of basic science explaining why low gestational or early childhood 25(OH)D levels would adversely effect brain development.

      Eyles DW, Feron F, Cui X, Kesby JP, Harms LH, Ko P, McGrath JJ, Burne TH. Developmental vitamin D deficiency causes abnormal brain development. Psychoneuroendocrinology. 2009 Dec;34 Suppl 1:S247-57. doi: 10.1016/j.psyneuen.2009.04.015. Epub . Review. Eyles DW, 2009

      DeLuca GC, Kimball SM, Kolasinski J, Ramagopalan SV, Ebers GC. Review: the role of vitamin D in nervous system health and disease. Neuropathol Appl Neurobiol. 2013 Aug;39(5):458-84. doi: 10.1111/nan.12020. DeLuca GC, 2013

      Eyles DW, Burne TH, McGrath JJ. Vitamin D, effects on brain development, adult brain function and the links between low levels of vitamin D and neuropsychiatric disease. Front Neuroendocrinol. 2013 Jan;34(1):47-64. doi: 10.1016/j.yfrne.2012.07.001. Epub 2012 Jul 11. Review. Eyles DW, 2013

      Furthermore, the vitamin D theory of autism explains most of the epidemiological facts of ASD.

      Cannell JJ. On the aetiology of autism. Acta Paediatr. 2010 Aug;99(8):1128-30. Cannell JJ, 2010

      Cannell JJ. Autism and vitamin D. Med Hypotheses. 2008;70(4):750-9. Cannell JJ, 2008

      70% of American toddlers do not take the Ameri


      This comment, imported by Hypothesis from PubMed Commons, is licensed under CC BY.

    1. On 2013 Dec 19, Raphael Stricker commented:

      Clinical Evidence for Rapid Transmission of Lyme Disease Following a Tickbite: Response to Binnicker et al.

      Raphael B. Stricker, MD,* Eleanor D. Hynote, MD,* and Phyllis C. Mervine, EdM.*

      *International Lyme and Associated Diseases Society, P.O. Box 341461, Bethesda, MD 20827-1461. www.ILADS.org

      Binnicker et al. dispute the clinical diagnosis of Lyme disease in our patients based on three factors: (1) a “physician-diagnosed target lesion” was not present at the site of the tickbite; (2) although an IgM antibody response was present, conversion to an IgG response was not documented; and (3) recovery of Borrelia burgdorferi, the spirochetal agent of Lyme disease, was not demonstrated by culture or molecular techniques.

      First, it is important to recall that Lyme disease is a clinical diagnosis according to the Centers for Disease Control and Prevention (CDC), which states that “general symptoms” such as fatigue, chills, fever, headache, muscle and joint aches, and swollen lymph nodes “may be the only evidence of infection” in early Lyme disease (CDC, 2012). In addition, the erythema migrans (EM) rash manifests as a “target lesion” in only 9% of cases (Stonehouse et al, 2010), may take up to 30 days to develop (CDC, 2012) and may be completely absent in up to 50% of patients with Lyme disease, as it was in our three patients (Steinberg et al, 1996; Stricker et al, 2006; Kudish et al, 2007). Second, in the setting of a tickbite and clinical symptoms of acute Lyme disease, the prompt administration of antibiotics may abort the typical serological response, as acknowledged by Binnicker et al. and others (Dattwyler et al. 1988; Aguero-Rosenfeld et al, 1996). Few studies have evaluated the serological evolution in Lyme disease patients treated as promptly as ours were (see below). Third, culture and molecular testing is highly insensitive in blood samples and even in tissue or synovial fluid from Lyme disease patients (Coulter et al, 2005; Stricker, 2007; Babady et al, 2008). Thus from a symptom-based and serological perspective, our patients met the CDC case definition of acute Lyme disease even in the absence of a target-shaped EM rash and insensitive laboratory procedures.

      Binnicker et al. also mention the CDC “recommendation” that Lyme serology should be performed using a two-tier algorithm. This serological analysis involves a screening enzyme immunoassay or immunofluorescence assay and confirmatory Western blot performed with kits approved by the Food and Drug Administration (FDA) for commercial sale. However the CDC states that this algorithm was developed “for the purposes of surveillance” and was not intended for diagnosis of Lyme disease (CDC, 2011). Furthermore, the FDA-approved commercial two-tier test system has a sensitivity of only 46% and yields results that appear to be biased against women (Binnicker et al, 2008; Stricker and Johnson, 2011). Our patients were tested using a “gender neutral” system that has a sensitivity and specificity of >90% (Shah et al, 2010). Thus our patients had laboratory evaluation that was appropriate for the diagnosis of Lyme disease.

      Our report confirms studies in both animals and humans that document transmission of Lyme disease within 24 hours of a tickbite (Piesman et al, 1987; Patmas and Remorca, 1994; Strle et al, 1996a, 1996b; Angelov, 1996; Sood et al, 1997). When animal and human studies produce apparently conflicting results, the contradictory findings should be given serious consideration, even if they contravene existing clinical dogma.

      References

      1. Aguero-Rosenfeld ME, Nowakowski J, Bittker S, Cooper D, Nadelman RB, Wormser GP. Evolution of the serologic response to Borrelia burgdorferi in treated patients with culture-confirmed erythema migrans. J Clin Microbiol. 1996;34:1-9.
      2. Angelov L. Unusual features in the epidemiology of Lyme borreliosis. Eur J Epidemiol. 1996;12:9-11.
      3. Babady NE, Sloan LM, Vetter EA, Patel R, Binnicker MJ. Percent positive rate of Lyme real-time polymerase chain reaction in blood, cerebrospinal fluid, synovial fluid, and tissue. Diagn Microbiol Infect Dis. 2008 ;62:464-6.
      4. Binnicker MJ, Jespersen DJ, Harring JA, Rollins LO, Bryant SC, Beito EM. Evaluation of two commercial systems for automated processing, reading, and interpretation of Lyme borreliosis Western blots. J Clin Microbiol. 2008;46:2216-21.
      5. Binnicker MJ, Theel ES, Pritt BS. Lack of evidence for rapid transmission of Lyme disease following a tick bite. Diagn Microbiol Infect Dis. 2012;73:102-3.
      6. Centers for Disease Control and Prevention (CDC, 2011). Lyme disease (Borrelia burgdorferi) 2011 case definition. Available at http://wwwn.cdc.gov/NNDSS/script/casedef.aspx?CondYrID=752&DatePub=1/1/2011 12:00:00 AM. Accessed December 4, 2013.
      7. Centers for Disease Control and Prevention (CDC, 2012). Signs and symptoms of Lyme disease. Available at http://www.cdc.gov/lyme/signs_symptoms/index.html. Accessed December 4, 2013.
      8. Coulter P, Lema C, Flayhart D, Linhardt AS, Aucott JN, Auwaerter PG, Dumler JS. Two-year evaluation of Borrelia burgdorferi culture and supplemental tests for definitive diagnosis of Lyme disease. J Clin Microbiol. 2005;43:5080-4.
      9. Dattwyler RJ, Volkman DJ, Luft BJ, Halperin JJ, Thomas J, Golightly MG. Seronegative Lyme disease. Dissociation of specific T- and B-lymphocyte responses to Borrelia burgdorferi. N Engl J Med. 1988;319:1441-6.
      10. Hynote ED, Mervine PC, Stricker RB. Clinical evidence for rapid transmission of Lyme disease following a tickbite. Diagn Microbiol Infect Dis. 2012;72:188-92.
      11. Kudish K, Sleavin W, Hathcock L. Lyme disease trends: Delaware, 2000 - 2004. Del Med J. 2007;79:51-8.
      12. Patmas MA, Remorca C. Disseminated Lyme disease after short-duration tick bite. J Spiro Tick Dis. 1994;1:77-78.
      13. Piesman J, Mather TN, Sinsky RJ, Spielman A. Duration of tick attachment and Borrelia burgdorferi transmission. J Clin Microbiol. 1987;25:557-8.
      14. Shah JS, Du Cruz I., Narciso W, Lo W, Harris NS. Improved clinical sensitivity for detection of antibodies to Borrelia burgdorferi by Western blots prepared from a mixture of two strains of B. burgdorferi, 297 and B31, and interpreted by in-house criteria. European Infect Dis. 2010;4:56–60.
      15. Sood SK, Salzman MB, Johnson BJ, Happ CM, Feig K, Carmody L, Rubin LG, Hilton E, Piesman J. Duration of tick attachment as a predictor of the risk of Lyme disease in an area in which Lyme disease is endemic. J Infect Dis. 1997;175:996-9.
      16. Steinberg SH, Strickland GT, Pena C, Israel E. Lyme disease surveillance in Maryland, 1992. Ann Epidemiol. 1996;6:24-9.
      17. Stonehouse A, Studdiford JS, Henry CA. An update on the diagnosis and treatment of early Lyme disease: "focusing on the bull's eye, you may miss the mark". J Emerg Med. 2010;39:e147-51.
      18. Stricker RB, Lautin A, Burrascano JJ. Lyme disease: the quest for magic bullets. Chemotherapy. 2006;52:53-9.
      19. Stricker RB. Counterpoint: long-term antibiotic therapy improves persistent symptoms associated with lyme disease. Clin Infect Dis. 2007;45:149-57.
      20. Stricker RB, Johnson L. The pain of chronic Lyme disease: moving the discourse backward? FASEB J. 2011;25:4085-7.
      21. Stricker RB, Hynote ED, Mervine PC. Clinical evidence for rapid transmission of Lyme disease following a tickbite: response to Piesman and Gray. Diagn Microbiol Infect Dis. 2012;73:104-5.
      22. Strle F, Nelson JA, Ruzic-Sabljic E, Cimperman J, Maraspin V, Lotric-Furlan S, Cheng Y, Picken MM, Trenholme GM, Picken RN. European Lyme borreliosis: 231 culture-confirmed cases involving patients with erythema migrans. Clin Infect Dis. 1996a;23:61-5.
      23. Strle F, Maraspin V, Furlan-Lotric S, Cimperman J. Epidemiological study of a cohort of adult patients with Erythema migrans registered in Slovenia in 1993. Eur J Epidemiol. 1996b ;12:503-7.


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    1. On 2013 Oct 31, John Cannell commented:

      The authors stated that markers of oxidative stress are present in autism spectrum disorder (ASD). I wonder if the authors are aware that the genes for the antioxidants superoxide dismutase and thioredoxin reductase are directly up-regulated by the secosteroid 1,25 di-hydroxy vitamin D3 (calcitriol). I believe both genes also harbor a vitamin D response element.

      Peehl DM, Shinghal R, Nonn L, Seto E, Krishnan AV, Brooks JD, Feldman D. Molecular activity of 1,25‐dihydroxyvitamin D3 in primary cultures of human prostatic epithelial cells revealed by cDNA microarray analysis. J. Steroid Biochem Mol. Biol 2004;92:131–141. PMID:15555907>

      Calcitriol also directly up-regulates glutathione reductase and increases glutathione levels.

      Jain SK, et alo. Vitamin D upregulates glutamate cysteine ligase and glutathione reductase, and GSH formation, and decreases ROS and MCP-1 and IL-8 secretion in high-glucose exposed U937 monocytes. Biochem Biophys Res Commun. 2013 Jul 19;437(1):7-11. doi: 10.1016/j.bbrc.2013.06.004. Jain SK, 2013

      Also, supplemental vitamin D significantly reduces oxidative stress in humans.

      Nikooyeh B, et al. Daily intake of vitamin D- or calcium-vitamin D-fortified Persian yogurt drink (doogh) attenuates diabetes-induced oxidative stress: evidence for antioxidative properties of vitamin D.J Hum Nutr Diet. 2013 Jul 5. doi: 10.1111/jhn.12142. Nikooyeh B, 2014

      Asemi Z, et al. Vitamin D supplementation affects serum high-sensitivity C-reactive protein, insulin resistance, and biomarkers of oxidative stress in pregnant women. J Nutr. 2013 Sep;143(9):1432-8. doi: 10.3945/jn.113.177550. Asemi Z, 2013

      Thus the vitamin D theory of ASD (vitamin D deficiency being the environmental risk factor for this highly heritable disorder) is consistent with the authors work. Three recent studies, using community controls, have found 25(OH)D levels are significantly lower in children with ASD. Two of the studies below (Mostafa et al and Gong et al) also found ASD severity, as rated on standard ASD rating scales, is inversely correlated with 25(OH)D levels. Mostafa et al found an R value of -.86 for the association of serum 25(OH)D with ASD severity.

      Gong ZL, Luo CM, Wang L, Shen L, Wei F, Tong RJ, Liu Y. Serum 25-hydroxyvitamin D levels in Chinese children with autism spectrum disorders. Neuroreport. 2013 Oct 1. Gong ZL, 2014

      Meguid NA, Hashish AF, Anwar M, Sidhom G. Reduced serum levels of 25-hydroxy and 1,25-dihydroxy vitamin D in Egyptian children with autism. J Altern Complement Med. 2010 Jun;16(6):641-5. Meguid NA, 2010

      Mostafa GA, Al-Ayadhi LY.Reduced serum concentrations of 25-hydroxy vitamin D in children with autism: relation to autoimmunity. J Neuroinflammation. 2012 Aug 17;9:201. Mostafa GA, 2012

      There is a plethora of basic science explaining why low gestational or early childhood 25(OH)D levels would adversely effect brain development.

      Eyles DW, Feron F, Cui X, Kesby JP, Harms LH, Ko P, McGrath JJ, Burne TH. Developmental vitamin D deficiency causes abnormal brain development. Psychoneuroendocrinology. 2009 Dec;34 Suppl 1:S247-57. doi: 10.1016/j.psyneuen.2009.04.015. Epub . Review. Eyles DW, 2009

      DeLuca GC, Kimball SM, Kolasinski J, Ramagopalan SV, Ebers GC. Review: the role of vitamin D in nervous system health and disease. Neuropathol Appl Neurobiol. 2013 Aug;39(5):458-84. doi: 10.1111/nan.12020. DeLuca GC, 2013

      Eyles DW, Burne TH, McGrath JJ. Vitamin D, effects on brain development, adult brain function and the links between low levels of vitamin D and neuropsychiatric disease. Front Neuroendocrinol. 2013 Jan;34(1):47-64. doi: 10.1016/j.yfrne.2012.07.001. Epub 2012 Jul 11. Review. Eyles DW, 2013

      Furthermore, the vitamin D theory of autism explains most of the epidemiological facts of ASD.

      Cannell JJ. On the aetiology of autism. Acta Paediatr. 2010 Aug;99(8):1128-30. Cannell JJ, 2010

      Cannell JJ. Autism and vitamin D. Med Hypotheses. 2008;70(4):750-9. Cannell JJ, 2008

      70% of American toddlers do not take


      This comment, imported by Hypothesis from PubMed Commons, is licensed under CC BY.

    1. On 2017 Aug 22, Raphael Stricker commented:

      Another LYMErix Whitewash.

      Raphael B. Stricker, MD

      Union Square Medical Associates, San Francisco, CA, USA. rstricker@usmamed.com

      The Aronowitz article presents an unsatisfactory analysis of the LYMErix vaccine debacle. The spin in the article is a classic example of blaming the victims for their misfortune while ignoring the problems leading to that misfortune.

      The spin in the article is that the science underlying the LYMErix vaccine was sound and beyond question, that the vaccine was proven to be safe beyond a shadow of a doubt, and that the antiscience lobbying of misguided Lyme activists brought down the vaccine. Considering that the LYMErix vaccine was the object of a class-action lawsuit brought by patients who claimed to have been harmed by the vaccine (1), and in view of the safety concerns described below, the article spin is impossible to defend.

      The premise of the article is that the LYMErix vaccine was proven to be safe. This ignores substantial reports of LYMErix-induced patient harm in the peer-reviewed medical literature (2-6), and studies using animal models and in vitro systems support these safety concerns (7,8). The vaccine-induced rheumatological and neurological complications are what alarmed the Lyme community and ultimately led to rejection of the vaccine as unsafe. An intriguing and disturbing scientific aspect of the LYMErix vaccine is that, although it was made from a subunit protein, the vaccine elicited all manner of immune responses in vaccinees, and these remain unexplained (9,10). Thus there was significant clinical and laboratory evidence underlying doubts about the safety of this ill-fated vaccine.

      Another curious spin is that the author blames Lyme activists for spreading fear about the vaccine that ultimately diminished its use and prevented an adequate assessment of its clinical value. In reality, the vaccine was pulled off the market to avoid disclosure of Phase IV data that would have shown limited efficacy and significant safety concerns related to LYMErix (11-13).

      Aronowitz divides the Lyme universe into "orthodox" and "heterodox" camps. The "orthodox" camp defines Lyme disease in a narrow fashion that excludes various clinical manifestations and chronic forms of the disease despite growing evidence to the contrary (14). Thus a patient who develops fibromyalgia or fatigue symptoms after receiving the Lyme vaccine would not have complications related to the vaccine because fibromyalgia and fatigue are separate entities unrelated to Lyme disease. This narrow definition serves to enhance the benefit of the vaccine (ie, no Lyme symptoms) while dismissing potential complications of the vaccine (ie, fibromyalgia and fatigue are separate and unrelated problems). It is easy to see why the Lyme community would be reluctant to go along with this selective view of the vaccine.

      In contrast, Aronowitz defines the "heterodox" camp as having a broad view of Lyme disease that requires prolonged treatment with antibiotics rather than any attempt to prevent the disease. The implication that this patient group is opposed to a Lyme vaccine because its members are invested in being chronically ill and taking prolonged courses of antibiotics strains credibility. The recognition that numerous patients fail the "orthodox" approach to Lyme disease and remain chronically ill is what drives these patients to seek better treatment, and certainly a vaccine that is safe and effective would be welcome (15). Unfortunately as outlined above, LYMErix was not it.

      References 1. LDA website: Vaccine lawsuit. Available at: https://www.lymediseaseassociation.org/about-lyme/controversy/vaccine/1157-vaccine-suit-lda-ltr-a-judgement. Accessed July 22, 2017. 2. Rose et al, J Rheumatol. 2001;28:2555-7. 3. Latov et al, Periph Nerv Syst. 2004;9:165-7. 4. Souayah et al, Vaccine 2009;27:7322-5. 5. Nardelli et al, Future Microbiol. 2009;4:457-69. 6. Marks DH, Int J Risk Saf Med. 2011;23:89-96. 7. Croke et al, Infect Immun. 2000;68:658-63. 8. Alaedini & Latov, J Neuroimmunol. 2005;159:192-5. 9. Molloy et al, Clin Infect Dis. 2000;31:42-7. 10. Fawcett et al, Clin Diagn Lab Immunol. 2001;8:79-84. 11. Hanson & Edelman, Expert Rev Vaccines 2003;2:683-703. 11. Nigrovic & Thompson, Epidemiol Infect. 2007;135:1-8. 13. LDA website: LYMERIX Meeting; LDA Meets with FDA. Available at https://www.lymediseaseassociation.org/about-lyme/controversy/vaccine/261-lymerix-meeting. Accessed July 22, 2017. 14. Stricker RB, Fesler MC. Chronic Dis Int 2017;4:1025. 15. Stricker RB, Johnson L. Lancet Infect Dis 2014;14:12.

      Disclosure: RBS is a member of the International Lyme and Associated Diseases Society (ILADS) and a director of LymeDisease.org. He has no financial or other conflicts to declare.


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    1. On 2013 Dec 20, Raphael Stricker commented:

      Clinical Evidence for Rapid Transmission of Lyme Disease Following a Tickbite: Response to Sugar.

      Raphael B. Stricker, MD,* Eleanor D. Hynote, MD,* and Phyllis C. Mervine, EdM.*

      *International Lyme and Associated Diseases Society, P.O. Box 341461, Bethesda, MD 20827-1461. www.ILADS.org

      Sugar complains about the lack of seroconvesion from IgM to IgG in our promptly treated patients, but then acknowledges that the IgM response may be persistent, as seen in our patient with acute Lyme disease and Babesia duncani coinfection. Although the IgM response may persist for long periods in some patients with Lyme disease (Craft et al, 1986; Aguero-Rosenfeld et al, 1996; Kalish et al, 2001; Porwancher et al, 2011), reversion to seronegative status has been associated with response to treatment in other patients with acute infection (Engstrom et al, 1995; Trevejo et al, 1999). Contrary to the statement by Sugar, serological testing appears to have adequate sensitivity and specificity to establish a diagnosis of Babesia infection (Abrams, 2008; Prince et al, 2010). Thus the clinical and laboratory features of our cases comply with standards for the diagnosis of tickborne diseases.

      Our report confirms studies in both animals and humans that document transmission of Lyme disease within 24 hours of a tickbite (Piesman et al, 1987; Patmas and Remorca, 1994; Strle et al, 1996a, 1996b; Angelov, 1996; Sood et al, 1997). When animal and human studies produce apparently conflicting results, the contradictory findings should be given serious consideration, even if they contravene existing clinical dogma.

      References

      1. Abrams Y. Complications of coinfection with Babesia and Lyme disease after splenectomy. J Am Board Fam Med. 2008;21:75-7.
      2. Aguero-Rosenfeld ME, Nowakowski J, Bittker S, Cooper D, Nadelman RB, Wormser GP. Evolution of the serologic response to Borrelia burgdorferi in treated patients with culture-confirmed erythema migrans. J Clin Microbiol. 1996;34:1-9.
      3. Angelov L. Unusual features in the epidemiology of Lyme borreliosis. Eur J Epidemiol. 1996;12:9-11.
      4. Craft JE, Fischer DK, Shimamoto GT, Steere AC. Antigens of Borrelia burgdorferi recognized during Lyme disease. Appearance of a new immunoglobulin M response and expansion of the immunoglobulin G response late in the illness. J Clin Invest. 1986;78:934-9.
      5. Engstrom SM, Shoop E, Johnson RC. Immunoblot interpretation criteria for serodiagnosis of early Lyme disease. J Clin Microbiol. 1995;33:419-27.
      6. Hynote ED, Mervine PC, Stricker RB. Clinical evidence for rapid transmission of Lyme disease following a tickbite. Diagn Microbiol Infect Dis. 2012;72:188-92.
      7. Kalish RA, McHugh G, Granquist J, Shea B, Ruthazer R, Steere AC. Persistence of immunoglobulin M or immunoglobulin G antibody responses to Borrelia burgdorferi 10–20 years after active Lyme disease. Clin Infect Dis 2001;33:780–5.
      8. Patmas MA, Remorca C. Disseminated Lyme disease after short-duration tick bite. J Spiro Tick Dis. 1994;1:77-78.
      9. Piesman J, Mather TN, Sinsky RJ, Spielman A. Duration of tick attachment and Borrelia burgdorferi transmission. J Clin Microbiol. 1987;25:557-8.
      10. Porwancher RB, Hagerty CG, Fan J, Landsberg L, Johnson BJ, Kopnitsky M, Steere AC, Kulas K, Wong SJ. Multiplex immunoassay for Lyme disease using VlsE1-IgG and pepC10-IgM antibodies: improving test performance through bioinformatics. Clin Vaccine Immunol. 2011;18:851-9.
      11. Prince HE, Lapé-Nixon M, Patel H, Yeh C. Comparison of the Babesia duncani (WA1) IgG detection rates among clinical sera submitted to a reference laboratory for WA1 IgG testing and blood donor specimens from diverse geographic areas of the United States. Clin Vaccine Immunol. 2010;17:1729-33.
      12. Sood SK, Salzman MB, Johnson BJ, Happ CM, Feig K, Carmody L, Rubin LG, Hilton E, Piesman J. Duration of tick attachment as a predictor of the risk of Lyme disease in an area in which Lyme disease is endemic. J Infect Dis. 1997;175:996-9.
      13. Stricker RB, Hynote ED, Mervine PC. Clinical evidence for rapid transmission of Lyme disease following a tickbite: response to Piesman and Gray. Diagn Microbiol Infect Dis. 2012;73:104-5.
      14. Strle F, Nelson JA, Ruzic-Sabljic E, Cimperman J, Maraspin V, Lotric-Furlan S, Cheng Y, Picken MM, Trenholme GM, Picken RN. European Lyme borreliosis: 231 culture-confirmed cases involving patients with erythema migrans. Clin Infect Dis. 1996a;23:61-5.
      15. Strle F, Maraspin V, Furlan-Lotric S, Cimperman J. Epidemiological study of a cohort of adult patients with Erythema migrans registered in Slovenia in 1993. Eur J Epidemiol. 1996b ;12:503-7.
      16. Trevejo RT, Krause PJ, Sikand VK, Schriefer ME, Ryan R, Lepore T, Porter W, Dennis DT. Evaluation of two-test serodiagnostic method for early Lyme disease in clinical practice. J Infect Dis. 1999;179:931-8.

      Disclosure: RBS is a member of the International Lyme and Associated Diseases Society (ILADS) and a director of LymeDisease.org. He has no financial or other conflicts to declare.


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    1. On 2016 Apr 18, PAMELA RONALD commented:

      Following the publication of this Article, we discovered that Xanthomonas oryzae pv. oryzae (Xoo) lacking the peptide Ax21 is still able to trigger XA21-mediated immunity<sup>1.</sup> Furthermore, we were unable to consistently reproduce experiments demonstrating that synthetic AxYS22 triggers XA21-mediated immunity<sup>2,3,4.</sup>

      In light of these results, we repeated the experiments reported in this Article. We found that neither AxYS22 nor Xoo enhance accumulation of the XA21-GFP protein beyond that observed following mock treatment. Shredding of leaf tissue (mock), with or without treatment, induces higher levels of XA21-GFP protein and correspondingly higher levels of the cleavage product as compared with the unshredded control. The presence of higher levels of cleavage product after wounding or Xoo treatment facilitates detection. Based on these results, we can no longer ascribe a role for Xoo or AxYs22 in XA21-GFP cleavage.

      These findings do not alter the main conclusion of this Article that XA21-GFP is cleaved and translocates to the nucleus of protoplasts when transiently overexpressed and that the putative nuclear localization sequence (NLS) is required for localization. We are currently investigating the in vivo biological relevance of the putative NLS in the rice immune response. This notice of correction was first submitted to the editors April 7, 2014.

      1. Bahar, O. P., Pruitt, R., Luu, D. D., Schwessinger, B., Daudi, A., Liu, F., Ruan, R., Fontaine-Bodin, L., Koebnik, R. & Ronald, P. C. The Xanthomonas Ax21 protein is processed by the general secretory system and is secreted in association with outer membrane vesicles. PeerJ 2, e242 (2014).
      2. Lee, S. W., Han, S. W., Sririyanum, M., Park, C. J., Seo, Y. S. & Ronald, P. C. A type I-secreted, sulfated peptide triggers XA21-mediated innate immunity. Science 326, 850–853 (2009).
      3. Lee S. W., Han S. W., Sririyanum M., Park C. J., Seo Y. S. & Ronald P. C. Retraction. Science 342, 191 (2013).
      4. Ronald P. C. 2013. Lab Life: The Anatomy of a Retraction, Scientific American. October 10, 2013. http://blogs.scientificamerican.com/food-matters/2013/10/10/lab-life-the-anatomy-of-a-retraction/


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    1. On 2013 Oct 31, John Cannell commented:

      The authors stated that markers of oxidative stress are present in autism spectrum disorder (ASD). I wonder if the authors are aware that the genes for the antioxidants superoxide dismutase and thioredoxin reductase are directly up-regulated by the secosteroid 1,25 di-hydroxy vitamin D3 (calcitriol). I believe both genes also harbor a vitamin D response element.

      Peehl DM, Shinghal R, Nonn L, Seto E, Krishnan AV, Brooks JD, Feldman D. Molecular activity of 1,25‐dihydroxyvitamin D3 in primary cultures of human prostatic epithelial cells revealed by cDNA microarray analysis. J. Steroid Biochem Mol. Biol 2004;92:131–141. PMID:15555907>

      Calcitriol also directly up-regulates glutathione reductase and increases glutathione levels.

      Jain SK, et alo. Vitamin D upregulates glutamate cysteine ligase and glutathione reductase, and GSH formation, and decreases ROS and MCP-1 and IL-8 secretion in high-glucose exposed U937 monocytes. Biochem Biophys Res Commun. 2013 Jul 19;437(1):7-11. doi: 10.1016/j.bbrc.2013.06.004. Jain SK, 2013

      Also, supplemental vitamin D significantly reduces oxidative stress in humans.

      Nikooyeh B, et al. Daily intake of vitamin D- or calcium-vitamin D-fortified Persian yogurt drink (doogh) attenuates diabetes-induced oxidative stress: evidence for antioxidative properties of vitamin D.J Hum Nutr Diet. 2013 Jul 5. doi: 10.1111/jhn.12142. Nikooyeh B, 2014

      Asemi Z, et al. Vitamin D supplementation affects serum high-sensitivity C-reactive protein, insulin resistance, and biomarkers of oxidative stress in pregnant women. J Nutr. 2013 Sep;143(9):1432-8. doi: 10.3945/jn.113.177550. Asemi Z, 2013

      Thus the vitamin D theory of ASD (vitamin D deficiency being the environmental risk factor for this highly heritable disorder) is consistent with the authors work. Three recent studies, using community controls, have found 25(OH)D levels are significantly lower in children with ASD. Two of the studies below (Mostafa et al and Gong et al) also found ASD severity, as rated on standard ASD rating scales, is inversely correlated with 25(OH)D levels. Mostafa et al found an R value of -.86 for the association of serum 25(OH)D with ASD severity.

      Gong ZL, Luo CM, Wang L, Shen L, Wei F, Tong RJ, Liu Y. Serum 25-hydroxyvitamin D levels in Chinese children with autism spectrum disorders. Neuroreport. 2013 Oct 1. Gong ZL, 2014

      Meguid NA, Hashish AF, Anwar M, Sidhom G. Reduced serum levels of 25-hydroxy and 1,25-dihydroxy vitamin D in Egyptian children with autism. J Altern Complement Med. 2010 Jun;16(6):641-5. Meguid NA, 2010

      Mostafa GA, Al-Ayadhi LY.Reduced serum concentrations of 25-hydroxy vitamin D in children with autism: relation to autoimmunity. J Neuroinflammation. 2012 Aug 17;9:201. Mostafa GA, 2012

      There is a plethora of basic science explaining why low gestational or early childhood 25(OH)D levels would adversely effect brain development.

      Eyles DW, Feron F, Cui X, Kesby JP, Harms LH, Ko P, McGrath JJ, Burne TH. Developmental vitamin D deficiency causes abnormal brain development. Psychoneuroendocrinology. 2009 Dec;34 Suppl 1:S247-57. doi: 10.1016/j.psyneuen.2009.04.015. Epub . Review. Eyles DW, 2009

      DeLuca GC, Kimball SM, Kolasinski J, Ramagopalan SV, Ebers GC. Review: the role of vitamin D in nervous system health and disease. Neuropathol Appl Neurobiol. 2013 Aug;39(5):458-84. doi: 10.1111/nan.12020. DeLuca GC, 2013

      Eyles DW, Burne TH, McGrath JJ. Vitamin D, effects on brain development, adult brain function and the links between low levels of vitamin D and neuropsychiatric disease. Front Neuroendocrinol. 2013 Jan;34(1):47-64. doi: 10.1016/j.yfrne.2012.07.001. Epub 2012 Jul 11. Review. Eyles DW, 2013

      Furthermore, the vitamin D theory of autism explains most of the epidemiological facts of ASD.

      Cannell JJ. On the aetiology of autism. Acta Paediatr. 2010 Aug;99(8):1128-30. Cannell JJ, 2010

      Cannell JJ. Autism and vitamin D. Med Hypotheses. 2008;70(4):750-9. Cannell JJ, 2008

      70% of American toddlers do not take


      This comment, imported by Hypothesis from PubMed Commons, is licensed under CC BY.

    2. On 2013 Oct 31, John Cannell commented:

      The authors stated that markers of oxidative stress are present in autism spectrum disorder (ASD). I wonder if the authors are aware that the genes for the antioxidants superoxide dismutase and thioredoxin reductase are directly up-regulated by the secosteroid 1,25 di-hydroxy vitamin D3 (calcitriol). I believe both genes also harbor a vitamin D response element.

      Peehl DM, Shinghal R, Nonn L, Seto E, Krishnan AV, Brooks JD, Feldman D. Molecular activity of 1,25‐dihydroxyvitamin D3 in primary cultures of human prostatic epithelial cells revealed by cDNA microarray analysis. J. Steroid Biochem Mol. Biol 2004;92:131–141. PMID:15555907>

      Calcitriol also directly up-regulates glutathione reductase and increases glutathione levels.

      Jain SK, et alo. Vitamin D upregulates glutamate cysteine ligase and glutathione reductase, and GSH formation, and decreases ROS and MCP-1 and IL-8 secretion in high-glucose exposed U937 monocytes. Biochem Biophys Res Commun. 2013 Jul 19;437(1):7-11. doi: 10.1016/j.bbrc.2013.06.004. Jain SK, 2013

      Also, supplemental vitamin D significantly reduces oxidative stress in humans.

      Nikooyeh B, et al. Daily intake of vitamin D- or calcium-vitamin D-fortified Persian yogurt drink (doogh) attenuates diabetes-induced oxidative stress: evidence for antioxidative properties of vitamin D.J Hum Nutr Diet. 2013 Jul 5. doi: 10.1111/jhn.12142. Nikooyeh B, 2014

      Asemi Z, et al. Vitamin D supplementation affects serum high-sensitivity C-reactive protein, insulin resistance, and biomarkers of oxidative stress in pregnant women. J Nutr. 2013 Sep;143(9):1432-8. doi: 10.3945/jn.113.177550. Asemi Z, 2013

      Thus the vitamin D theory of ASD (vitamin D deficiency being the environmental risk factor for this highly heritable disorder) is consistent with the authors work. Three recent studies, using community controls, have found 25(OH)D levels are significantly lower in children with ASD. Two of the studies below (Mostafa et al and Gong et al) also found ASD severity, as rated on standard ASD rating scales, is inversely correlated with 25(OH)D levels. Mostafa et al found an R value of -.86 for the association of serum 25(OH)D with ASD severity.

      Gong ZL, Luo CM, Wang L, Shen L, Wei F, Tong RJ, Liu Y. Serum 25-hydroxyvitamin D levels in Chinese children with autism spectrum disorders. Neuroreport. 2013 Oct 1. Gong ZL, 2014

      Meguid NA, Hashish AF, Anwar M, Sidhom G. Reduced serum levels of 25-hydroxy and 1,25-dihydroxy vitamin D in Egyptian children with autism. J Altern Complement Med. 2010 Jun;16(6):641-5. Meguid NA, 2010

      Mostafa GA, Al-Ayadhi LY.Reduced serum concentrations of 25-hydroxy vitamin D in children with autism: relation to autoimmunity. J Neuroinflammation. 2012 Aug 17;9:201. Mostafa GA, 2012

      There is a plethora of basic science explaining why low gestational or early childhood 25(OH)D levels would adversely effect brain development.

      Eyles DW, Feron F, Cui X, Kesby JP, Harms LH, Ko P, McGrath JJ, Burne TH. Developmental vitamin D deficiency causes abnormal brain development. Psychoneuroendocrinology. 2009 Dec;34 Suppl 1:S247-57. doi: 10.1016/j.psyneuen.2009.04.015. Epub . Review. Eyles DW, 2009

      DeLuca GC, Kimball SM, Kolasinski J, Ramagopalan SV, Ebers GC. Review: the role of vitamin D in nervous system health and disease. Neuropathol Appl Neurobiol. 2013 Aug;39(5):458-84. doi: 10.1111/nan.12020. DeLuca GC, 2013

      Eyles DW, Burne TH, McGrath JJ. Vitamin D, effects on brain development, adult brain function and the links between low levels of vitamin D and neuropsychiatric disease. Front Neuroendocrinol. 2013 Jan;34(1):47-64. doi: 10.1016/j.yfrne.2012.07.001. Epub 2012 Jul 11. Review. Eyles DW, 2013

      Furthermore, the vitamin D theory of autism explains most of the epidemiological facts of ASD.

      Cannell JJ. On the aetiology of autism. Acta Paediatr. 2010 Aug;99(8):1128-30. Cannell JJ, 2010

      Cannell JJ. Autism and vitamin D. Med Hypotheses. 2008;70(4):750-9. Cannell JJ, 2008

      70% of American toddlers do not take


      This comment, imported by Hypothesis from PubMed Commons, is licensed under CC BY.

    1. On 2013 Oct 25, Paul Glasziou commented:

      These comments are from a journal club at CREBP - www.crebp.net.au/ - where we later had the opportunity to put our questions to the papers first author (F Legare). Chris Del Mar presented this cluster RCT; Elaine Beller presented the Study Protocol (BMC Fam Pract 2011) and pilot Protocol (BMC Fam Pract 2007)

      Issues:

      1. The paper suggests that randomisation occurred after baseline data were collected (suboptimal). Although loss from each arm was similar, some baseline characteristics were not balanced (eg Table 3 and Table 4). However Légaré tells us in fact the randomisation took place before the baseline data were analysed. An added refinement might be to stratify by prescribing rates (detected in the Baseline phase).
      2. The patient recruitment was low: average of 3/physician for the whole season (and some physicians recruited none!). This was apparently because of ‘specialisation’ within practices – (‘Clusters’) -- which are very large (20-40 GPs), and some see only obstetrics or child development, etc (and hence recruited 0 patients). Nevertheless all the GPs in Clusters got the intervention, whether or not they see ‘drop-ins’ (more likely to be ARIs). Lagare comment: Patients were recruited by an RA who was attached full-time in the waiting room of the practice. Thus most eligible patients were recruited in each practice. This means the effect is unlikely to have been greater than reported (by a halo effect).
      3. Outcomes: ‘intention to use antibiotics’ is clearly a sub-optimal primary outcome because it is so soft. It was not possible to measure actual ABs dispensed (about 70% are in the private sector, unsubsidised by the Province).
      4. What was the intervention? As with all complex interventions, the effective components are sometimes hard to tease out. In this case, was it the ‘epidemiological’ education that did the trick, or the introduction to ‘shared decision-making’?
      5. Was the effect sustained? Legare comment: This was not measured in the study, but in the earlier pilot the effect was sustained.
      6. Were doctors paid to recruit patients? Legare comment: No – their main incentive was CEM credit.
      7. Did the intervention include the option of “delayed prescribing”? Legare comment: No – this was not considered as acceptable practice at the time.
      8. More minor things: a. More clusters would be better (and easier in Australia where practices appear to be smaller) b. What’s the financial influence (perverse incentives)? For this trial the practice clusters were not fee-for-service, (although they were in the pilot study. Leblanc A, Legare F, Labrecque M, Godin G, Thivierge R, Laurier C, et al. Feasibility of a randomised trial of a continuing medical education program in shared decision-making on the use of antibiotics for acute respiratory infections in primary care: the DECISION+ pilot trial. Implementation science : IS. 2011;6:5. PubMed PMID: 21241514. Pubmed Central PMCID: 3033351. Epub 2011/01/19. eng. or capitation). c. Was there contamination (despite the controls not having access to the Training, because the GPs were academic doctors who may all have known about the trial, its intent, and its hoped for outcome? We know that the control practices were on a wait-list (they were offered the intervention after the trial, although some the data from this – not published – showed a more modest response than the data from the trial proper. This might have been different (not CIs) offering the intervention to the control clusters.


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    1. On 2014 Mar 03, Andrea Messori commented:

      Overlapping meta-analyses on novel oral anticoagulants in atrial fibrillation

      The systematic review by Baker and Phung [1] is probably the most comprehensive analysis presently available on the comparative effectiveness of novel oral anticoagulants in patients with non-valvular atrial fibrillation. One problem for researchers who are interested in this topic is that PubMed now includes 13 meta-analyses or systematic reviews focused on this issue [1-13]. This confirms that a problem exists with multiple overlapping meta-analyses that study the same randomized trials published on the same topic [14,15]. However, there seems to be no simple solution to this problem.

      Andrea Messori, HTA Unit, Regional Health Service 50100 Firenze ITALY

      1. Baker WL, Phung OJ. Systematic review and adjusted indirect comparison meta-analysis of oral anticoagulants in atrial fibrillation. Circ Cardiovasc Qual Outcomes. 2012 Sep 1;5(5):711-9.
      2. Lip GY, Larsen TB, Skjøth F, Rasmussen LH. Indirect comparisons of new oral anticoagulant drugs for efficacy and safety when used for stroke prevention in atrial fibrillation. J Am Coll Cardiol. 2012 Aug 21;60(8):738-46.
      3. Sardar P, Chatterjee S, Wu WC, Lichstein E, Ghosh J, Aikat S, Mukherjee D. New oral anticoagulants are not superior to warfarin in secondary prevention of stroke or transient ischemic attacks, but lower the risk of intracranial bleeding: insights from a meta-analysis and indirect treatment comparisons. PLoS One. 2013 Oct 25;8(10):e77694.
      4. Assiri A, Al-Majzoub O, Kanaan AO, Donovan JL, Silva M. Mixed treatment comparison meta-analysis of aspirin, warfarin, and new anticoagulants for stroke prevention in patients with nonvalvular atrial fibrillation. Clin Ther. 2013 Jul;35(7):967-984.e2.
      5. Biondi-Zoccai G, Malavasi V, D'Ascenzo F, Abbate A, Agostoni P, Lotrionte M, Castagno D, Van Tassell B, Casali E, Marietta M, Modena MG, Ellenbogen KA, Frati G. Comparative effectiveness of novel oral anticoagulants for atrial fibrillation: evidence from pair-wise and warfarin-controlled network meta-analyses. HSR Proc Intensive Care Cardiovasc Anesth. 2013;5(1):40-54.
      6. Pink J, Pirmohamed M, Hughes DA. Comparative effectiveness of dabigatran, rivaroxaban, apixaban, and warfarin in the management of patients with nonvalvular atrial fibrillation. Clin Pharmacol Ther. 2013 Aug;94(2):269-76. doi:10.1038/clpt.2013.83.
      7. Messori A, Maratea D, Fadda V, Trippoli S. New and old anti-thrombotic treatments for patients with atrial fibrillation. Int J Clin Pharm. 2013Jun;35(3):297-302.
      8. Messori A, Maratea D, Fadda V, Trippoli S. Comparing new anticoagulants in atrial fibrillation using the number needed to treat. Eur J Intern Med. 2013 Jun;24(4):382-3.
      9. Harenberg J, Marx S, Wehling M. Head-to-head or indirect comparisons of the novel oral anticoagulants in atrial fibrillation: what's next? Thromb Haemost. 2012 Sep;108(3):407-9.
      10. Schneeweiss S, Gagne JJ, Patrick AR, Choudhry NK, Avorn J. Comparative efficacy and safety of new oral anticoagulants in patients with atrial fibrillation. Circ Cardiovasc Qual Outcomes. 2012 Jul 1;5(4):480-6.
      11. Skjøth F, Larsen TB, Rasmussen LH. Indirect comparison studies--are they useful? Insights from the novel oral anticoagulants for stroke prevention in atrial fibrillation. Thromb Haemost. 2012 Sep;108(3):405-6.
      12. Testa L, Agnifili M, Latini RA, Mattioli R, Lanotte S, De Marco F, Oreglia J, Latib A, Pizzocri S, Laudisa ML, Brambilla N, Bedogni F. Adjusted indirect comparison of new oral anticoagulants for stroke prevention in atrial fibrillation. QJM. 2012 Oct;105(10):949-57.
      13. Mantha S, Ansell J. An indirect comparison of dabigatran, rivaroxaban and apixaban for atrial fibrillation. Thromb Haemost. 2012 Sep;108(3):476-84.
      14. Moher D. The problem of duplicate systematic reviews. BMJ. 2013 Aug 14;347:f5040. doi: 10.1136/bmj.f5040.
      15. Siontis KC, Hernandez-Boussard T, Ioannidis JP. Overlapping meta-analyses on the same topic: survey of published studies. BMJ. 2013 Jul 19;347:f4501. doi: 10.1136/bmj.f4501.


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    1. On 2013 Oct 31, John Cannell commented:

      The authors stated that markers of oxidative stress are present in autism spectrum disorder (ASD). I wonder if the authors are aware that the genes for the antioxidants superoxide dismutase and thioredoxin reductase are directly up-regulated by the secosteroid 1,25 di-hydroxy vitamin D3 (calcitriol). I believe both genes also harbor a vitamin D response element.

      Peehl DM, Shinghal R, Nonn L, Seto E, Krishnan AV, Brooks JD, Feldman D. Molecular activity of 1,25‐dihydroxyvitamin D3 in primary cultures of human prostatic epithelial cells revealed by cDNA microarray analysis. J. Steroid Biochem Mol. Biol 2004;92:131–141. PMID:15555907>

      Calcitriol also directly up-regulates glutathione reductase and increases glutathione levels.

      Jain SK, et alo. Vitamin D upregulates glutamate cysteine ligase and glutathione reductase, and GSH formation, and decreases ROS and MCP-1 and IL-8 secretion in high-glucose exposed U937 monocytes. Biochem Biophys Res Commun. 2013 Jul 19;437(1):7-11. doi: 10.1016/j.bbrc.2013.06.004. Jain SK, 2013

      Also, supplemental vitamin D significantly reduces oxidative stress in humans.

      Nikooyeh B, et al. Daily intake of vitamin D- or calcium-vitamin D-fortified Persian yogurt drink (doogh) attenuates diabetes-induced oxidative stress: evidence for antioxidative properties of vitamin D.J Hum Nutr Diet. 2013 Jul 5. doi: 10.1111/jhn.12142. Nikooyeh B, 2014

      Asemi Z, et al. Vitamin D supplementation affects serum high-sensitivity C-reactive protein, insulin resistance, and biomarkers of oxidative stress in pregnant women. J Nutr. 2013 Sep;143(9):1432-8. doi: 10.3945/jn.113.177550. Asemi Z, 2013

      Thus the vitamin D theory of ASD (vitamin D deficiency being the environmental risk factor for this highly heritable disorder) is consistent with the authors work. Three recent studies, using community controls, have found 25(OH)D levels are significantly lower in children with ASD. Two of the studies below (Mostafa et al and Gong et al) also found ASD severity, as rated on standard ASD rating scales, is inversely correlated with 25(OH)D levels. Mostafa et al found an R value of -.86 for the association of serum 25(OH)D with ASD severity.

      Gong ZL, Luo CM, Wang L, Shen L, Wei F, Tong RJ, Liu Y. Serum 25-hydroxyvitamin D levels in Chinese children with autism spectrum disorders. Neuroreport. 2013 Oct 1. Gong ZL, 2014

      Meguid NA, Hashish AF, Anwar M, Sidhom G. Reduced serum levels of 25-hydroxy and 1,25-dihydroxy vitamin D in Egyptian children with autism. J Altern Complement Med. 2010 Jun;16(6):641-5. Meguid NA, 2010

      Mostafa GA, Al-Ayadhi LY.Reduced serum concentrations of 25-hydroxy vitamin D in children with autism: relation to autoimmunity. J Neuroinflammation. 2012 Aug 17;9:201. Mostafa GA, 2012

      There is a plethora of basic science explaining why low gestational or early childhood 25(OH)D levels would adversely effect brain development.

      Eyles DW, Feron F, Cui X, Kesby JP, Harms LH, Ko P, McGrath JJ, Burne TH. Developmental vitamin D deficiency causes abnormal brain development. Psychoneuroendocrinology. 2009 Dec;34 Suppl 1:S247-57. doi: 10.1016/j.psyneuen.2009.04.015. Epub . Review. Eyles DW, 2009

      DeLuca GC, Kimball SM, Kolasinski J, Ramagopalan SV, Ebers GC. Review: the role of vitamin D in nervous system health and disease. Neuropathol Appl Neurobiol. 2013 Aug;39(5):458-84. doi: 10.1111/nan.12020. DeLuca GC, 2013

      Eyles DW, Burne TH, McGrath JJ. Vitamin D, effects on brain development, adult brain function and the links between low levels of vitamin D and neuropsychiatric disease. Front Neuroendocrinol. 2013 Jan;34(1):47-64. doi: 10.1016/j.yfrne.2012.07.001. Epub 2012 Jul 11. Review. Eyles DW, 2013

      Furthermore, the vitamin D theory of autism explains most of the epidemiological facts of ASD.

      Cannell JJ. On the aetiology of autism. Acta Paediatr. 2010 Aug;99(8):1128-30. Cannell JJ, 2010

      Cannell JJ. Autism and vitamin D. Med Hypotheses. 2008;70(4):750-9. Cannell JJ, 2008

      70% of American toddlers do not take


      This comment, imported by Hypothesis from PubMed Commons, is licensed under CC BY.

    1. On 2013 Oct 31, John Cannell commented:

      The authors reported that immune system dysregulation is common in autism spectrum disorder (ASD”. Vitamin D deficiency produces very similar immune dysregulation.

      Prietl B, 2013

      < PMID:20119827>

      < PMID:23359064>

      < PMID:20427238>

      Thus the vitamin D theory of ASD (vitamin D deficiency being the environmental risk factor for this highly heritable disorder) is consistent with the authors work. Three recent studies, using community controls, have found 25(OH)D levels are significantly lower in children with ASD. Two of the studies below (Mostafa et al and Gong et al) also found ASD severity, as rated on standard ASD rating scales, is inversely correlated with 25(OH)D levels. Mostafa et al found an R value of -.86 for the association of serum 25(OH)D with ASD severity.

      Gong ZL, Luo CM, Wang L, Shen L, Wei F, Tong RJ, Liu Y. Serum 25-hydroxyvitamin D levels in Chinese children with autism spectrum disorders. Neuroreport. 2013 Oct 1. Gong ZL, 2014

      Meguid NA, Hashish AF, Anwar M, Sidhom G. Reduced serum levels of 25-hydroxy and 1,25-dihydroxy vitamin D in Egyptian children with autism. J Altern Complement Med. 2010 Jun;16(6):641-5. Meguid NA, 2010

      Mostafa GA, Al-Ayadhi LY.Reduced serum concentrations of 25-hydroxy vitamin D in children with autism: relation to autoimmunity. J Neuroinflammation. 2012 Aug 17;9:201. Mostafa GA, 2012

      There is a plethora of basic science explaining why low gestational or early childhood 25(OH)D levels would adversely effect brain development.

      Eyles DW, Feron F, Cui X, Kesby JP, Harms LH, Ko P, McGrath JJ, Burne TH. Developmental vitamin D deficiency causes abnormal brain development. Psychoneuroendocrinology. 2009 Dec;34 Suppl 1:S247-57. doi: 10.1016/j.psyneuen.2009.04.015. Epub . Review. Eyles DW, 2009

      DeLuca GC, Kimball SM, Kolasinski J, Ramagopalan SV, Ebers GC. Review: the role of vitamin D in nervous system health and disease. Neuropathol Appl Neurobiol. 2013 Aug;39(5):458-84. doi: 10.1111/nan.12020. DeLuca GC, 2013

      Eyles DW, Burne TH, McGrath JJ. Vitamin D, effects on brain development, adult brain function and the links between low levels of vitamin D and neuropsychiatric disease. Front Neuroendocrinol. 2013 Jan;34(1):47-64. doi: 10.1016/j.yfrne.2012.07.001. Epub 2012 Jul 11. Review. Eyles DW, 2013

      Furthermore, the vitamin D theory of autism explains most of the epidemiological facts of ASD.

      Cannell JJ. On the aetiology of autism. Acta Paediatr. 2010 Aug;99(8):1128-30. Cannell JJ, 2010

      Cannell JJ. Autism and vitamin D. Med Hypotheses. 2008;70(4):750-9. Cannell JJ, 2008

      70% of American toddlers do not take the American Pediatric Association's recommended vitamin D supplement of 400 IU/day and few toddlers or pregnant women get any sunshine due to the sun scare. As vitamin D fortified milk consumption and sun exposure has declined, so have toddlers and pregnant women’s vitamin D levels. The dramatic increase in the incidence of ASD occurred during the same time vitamin D levels were falling in toddlers and pregnant women.

      Cannell JJ. Autism, will vitamin D treat core symptoms? Medical Hypotheses. 2013 Aug;81(2):195-8. Cannell JJ, 2013

      Some autism researchers seem cognizant of the entire body of autism research. For example, a group of well-known European ASD researchers, including Professor Christopher Gillberg of the Gillberg Neuropsychiatric Institute, have recently called for the need for “urgent research” into the vitamin D deficiency theory of ASD.

      Kočovská E, Fernell E, Billstedt E, Minnis H, Gillberg C. Vitamin D and autism: clinical review. Res Dev Disabil. 2012 Sep-Oct;33(5):1541-50. doi: 10.1016/j.ridd.2012.02.015. Epub 2012 Apr 21.Kočovská E, 2012

      Until all autism researchers become cognizant of the wider body of scientific research, we will continue to wonder how to prevent - and perhaps even treat - this modern day plague.

      John J Cannell, MD

      Vitamin D Council

      http://www.vitamindcouncil.org


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    1. On 2013 Oct 31, John Cannell commented:

      The authors reported that immune system dysregulation is common in autism spectrum disorder (ASD”. Vitamin D deficiency produces very similar immune dysregulation.

      Prietl B, 2013

      < PMID:20119827>

      < PMID:23359064>

      < PMID:20427238>

      Thus the vitamin D theory of ASD (vitamin D deficiency being the environmental risk factor for this highly heritable disorder) is consistent with the authors work. Three recent studies, using community controls, have found 25(OH)D levels are significantly lower in children with ASD. Two of the studies below (Mostafa et al and Gong et al) also found ASD severity, as rated on standard ASD rating scales, is inversely correlated with 25(OH)D levels. Mostafa et al found an R value of -.86 for the association of serum 25(OH)D with ASD severity.

      Gong ZL, Luo CM, Wang L, Shen L, Wei F, Tong RJ, Liu Y. Serum 25-hydroxyvitamin D levels in Chinese children with autism spectrum disorders. Neuroreport. 2013 Oct 1. Gong ZL, 2014

      Meguid NA, Hashish AF, Anwar M, Sidhom G. Reduced serum levels of 25-hydroxy and 1,25-dihydroxy vitamin D in Egyptian children with autism. J Altern Complement Med. 2010 Jun;16(6):641-5. Meguid NA, 2010

      Mostafa GA, Al-Ayadhi LY.Reduced serum concentrations of 25-hydroxy vitamin D in children with autism: relation to autoimmunity. J Neuroinflammation. 2012 Aug 17;9:201. Mostafa GA, 2012

      There is a plethora of basic science explaining why low gestational or early childhood 25(OH)D levels would adversely effect brain development.

      Eyles DW, Feron F, Cui X, Kesby JP, Harms LH, Ko P, McGrath JJ, Burne TH. Developmental vitamin D deficiency causes abnormal brain development. Psychoneuroendocrinology. 2009 Dec;34 Suppl 1:S247-57. doi: 10.1016/j.psyneuen.2009.04.015. Epub . Review. Eyles DW, 2009

      DeLuca GC, Kimball SM, Kolasinski J, Ramagopalan SV, Ebers GC. Review: the role of vitamin D in nervous system health and disease. Neuropathol Appl Neurobiol. 2013 Aug;39(5):458-84. doi: 10.1111/nan.12020. DeLuca GC, 2013

      Eyles DW, Burne TH, McGrath JJ. Vitamin D, effects on brain development, adult brain function and the links between low levels of vitamin D and neuropsychiatric disease. Front Neuroendocrinol. 2013 Jan;34(1):47-64. doi: 10.1016/j.yfrne.2012.07.001. Epub 2012 Jul 11. Review. Eyles DW, 2013

      Furthermore, the vitamin D theory of autism explains most of the epidemiological facts of ASD.

      Cannell JJ. On the aetiology of autism. Acta Paediatr. 2010 Aug;99(8):1128-30. Cannell JJ, 2010

      Cannell JJ. Autism and vitamin D. Med Hypotheses. 2008;70(4):750-9. Cannell JJ, 2008

      70% of American toddlers do not take the American Pediatric Association's recommended vitamin D supplement of 400 IU/day and few toddlers or pregnant women get any sunshine due to the sun scare. As vitamin D fortified milk consumption and sun exposure has declined, so have toddlers and pregnant women’s vitamin D levels. The dramatic increase in the incidence of ASD occurred during the same time vitamin D levels were falling in toddlers and pregnant women.

      Cannell JJ. Autism, will vitamin D treat core symptoms? Medical Hypotheses. 2013 Aug;81(2):195-8. Cannell JJ, 2013

      Some autism researchers seem cognizant of the entire body of autism research. For example, a group of well-known European ASD researchers, including Professor Christopher Gillberg of the Gillberg Neuropsychiatric Institute, have recently called for the need for “urgent research” into the vitamin D deficiency theory of ASD.

      Kočovská E, Fernell E, Billstedt E, Minnis H, Gillberg C. Vitamin D and autism: clinical review. Res Dev Disabil. 2012 Sep-Oct;33(5):1541-50. doi: 10.1016/j.ridd.2012.02.015. Epub 2012 Apr 21.Kočovská E, 2012

      Until all autism researchers become cognizant of the wider body of scientific research, we will continue to wonder how to prevent - and perhaps even treat - this modern day plague.

      John J Cannell, MD

      Vitamin D Council

      http://www.vitamindcouncil.org


      This comment, imported by Hypothesis from PubMed Commons, is licensed under CC BY.

    1. On 2014 Mar 19, Patrice Brassard commented:

      We are interested in the study by Schramm et al. (1) on a relationship between the incidence of sepsis-associated delirium (SAD) and cerebral autoregulation. Cerebral autoregulation was found impaired one day after the diagnosis of sepsis and several patients developed SAD (after four days). SAD was attributed to the impaired cerebral autoregulation detected on day 1 suggesting that impaired dynamic cerebral autoregulation might trigger SAD. As mentioned by the authors, PaCO2 levels were at the upper normal range and increased from day 1 to 4. We consider that these high PaCO2 levels could have impaired dynamic cerebral autoregulation in these patients.

      The reason for that consideration is that we (2) and others (3) studied systemic hemodynamics, cerebral blood flow velocity, and dynamic cerebral autoregulation (by transfer function analysis) in healthy volunteers before and after an endotoxin bolus, which represents a model for evaluation of the systemic inflammatory response including vasodilatation (2) without the SAD-associated altered microcirculation. In these healthy volunteers, in whom cerebrovascular reactivity to CO2 seemed intact, endotoxemia was associated with reduced PaCO2 and cerebral perfusion and, in contrast to the patients studied by Schramm et al. (1), with enhanced dynamic cerebral autoregulation. Cerebral autoregulation depends critically on PaCO2 (4-6) and it may be that in septic patients a low PaCO2 would maintain (dynamic) cerebral autoregulation and in turn delay the development of SAD.

      Patrice Brassard (a) Yu-Sok Kim (b,c) Johannes van Lieshout (b,c,f) Niels H. Secher (d) Jaya B. Rosenmeier (e)

      a) Department of Kinesiology, Faculty of Medicine, Laval University, Quebec, Canada; b) Department of Internal Medicine; c) Laboratory for Clinical Cardiovascular Physiology, Heart Failure Research Center, Academic Medical Center, University of Amsterdam, Amsterdam, The Netherlands; d) Department of Anesthesia, The Copenhagen Muscle Research Center, Rigshospitalet, University of Copenhagen, Copenhagen, Denmark; e) Department of Cardiology, Gentofte University Hospital, Gentofte, Denmark; f) School of Biomedical Sciences, University of Nottingham Medical School, Queen’s Medical Centre, Nottingham, U.K.

      References (1) Schramm P, Klein KU, Falkenberg L, Berres M, Closhen D, Werhahn KJ, David M, Werner C, Engelhard K. Impaired cerebrovascular autoregulation in patients with severe sepsis and sepsis-associated deliriu. Crit Care. 2012;16:R181

      (2) Brassard P, Kim YS, van Lieshout J, Secher NH, Rosenmeier JB. Endotoxemia reduces cerebral perfusion but enhances dynamic cerebrovascular autoregulation at reduced arterial carbon dioxide tension. Crit Care Med. 2012;40:1873-1878

      (3) Berg RM, Plovsing RR, Ronit A, Bailey DM, Holstein-Rathlou NH, Moller K. Disassociation of Static and Dynamic Cerebral Autoregulatory Performance in Healthy Volunteers After Lipopolysaccharide Infusion and in Patients with Sepsis. Am J Physiol Regul Integr Comp Physiol. 2012 [Epub ahead of print]

      (4) Paulson OB, Strandgaard S, Edvinsson L: Cerebral autoregulation. Cerebrovasc Brain Metab Rev 1990; 2:161–192

      (5) Ainslie PN, Celi L, McGrattan K, et al: Dynamic cerebral autoregulation and baroreflex sensitivity during modest and severe step changes in arterial PCO2. Brain Res 2008; 1230:115–124

      (6) Aaslid R, Lindegaard KF, Sorteberg W, et al: Cerebral autoregulation dynamics in humans. Stroke 1989; 20:45–52

      This comment originally appeared here : http://ccforum.com/content/16/5/R181/comments


      This comment, imported by Hypothesis from PubMed Commons, is licensed under CC BY.

    1. On 2013 Oct 31, John Cannell commented:

      The authors stated that markers of oxidative stress are present in autism spectrum disorder (ASD). I wonder if the authors are aware that the genes for the antioxidants superoxide dismutase and thioredoxin reductase are directly up-regulated by the secosteroid 1,25 di-hydroxy vitamin D3 (calcitriol). I believe both genes also harbor a vitamin D response element.

      Peehl DM, Shinghal R, Nonn L, Seto E, Krishnan AV, Brooks JD, Feldman D. Molecular activity of 1,25‐dihydroxyvitamin D3 in primary cultures of human prostatic epithelial cells revealed by cDNA microarray analysis. J. Steroid Biochem Mol. Biol 2004;92:131–141. PMID:15555907>

      Calcitriol also directly up-regulates glutathione reductase and increases glutathione levels.

      Jain SK, et alo. Vitamin D upregulates glutamate cysteine ligase and glutathione reductase, and GSH formation, and decreases ROS and MCP-1 and IL-8 secretion in high-glucose exposed U937 monocytes. Biochem Biophys Res Commun. 2013 Jul 19;437(1):7-11. doi: 10.1016/j.bbrc.2013.06.004. Jain SK, 2013

      Also, supplemental vitamin D significantly reduces oxidative stress in humans.

      Nikooyeh B, et al. Daily intake of vitamin D- or calcium-vitamin D-fortified Persian yogurt drink (doogh) attenuates diabetes-induced oxidative stress: evidence for antioxidative properties of vitamin D.J Hum Nutr Diet. 2013 Jul 5. doi: 10.1111/jhn.12142. Nikooyeh B, 2014

      Asemi Z, et al. Vitamin D supplementation affects serum high-sensitivity C-reactive protein, insulin resistance, and biomarkers of oxidative stress in pregnant women. J Nutr. 2013 Sep;143(9):1432-8. doi: 10.3945/jn.113.177550. Asemi Z, 2013

      Thus the vitamin D theory of ASD (vitamin D deficiency being the environmental risk factor for this highly heritable disorder) is consistent with the authors work. Three recent studies, using community controls, have found 25(OH)D levels are significantly lower in children with ASD. Two of the studies below (Mostafa et al and Gong et al) also found ASD severity, as rated on standard ASD rating scales, is inversely correlated with 25(OH)D levels. Mostafa et al found an R value of -.86 for the association of serum 25(OH)D with ASD severity.

      Gong ZL, Luo CM, Wang L, Shen L, Wei F, Tong RJ, Liu Y. Serum 25-hydroxyvitamin D levels in Chinese children with autism spectrum disorders. Neuroreport. 2013 Oct 1. Gong ZL, 2014

      Meguid NA, Hashish AF, Anwar M, Sidhom G. Reduced serum levels of 25-hydroxy and 1,25-dihydroxy vitamin D in Egyptian children with autism. J Altern Complement Med. 2010 Jun;16(6):641-5. Meguid NA, 2010

      Mostafa GA, Al-Ayadhi LY.Reduced serum concentrations of 25-hydroxy vitamin D in children with autism: relation to autoimmunity. J Neuroinflammation. 2012 Aug 17;9:201. Mostafa GA, 2012

      There is a plethora of basic science explaining why low gestational or early childhood 25(OH)D levels would adversely effect brain development.

      Eyles DW, Feron F, Cui X, Kesby JP, Harms LH, Ko P, McGrath JJ, Burne TH. Developmental vitamin D deficiency causes abnormal brain development. Psychoneuroendocrinology. 2009 Dec;34 Suppl 1:S247-57. doi: 10.1016/j.psyneuen.2009.04.015. Epub . Review. Eyles DW, 2009

      DeLuca GC, Kimball SM, Kolasinski J, Ramagopalan SV, Ebers GC. Review: the role of vitamin D in nervous system health and disease. Neuropathol Appl Neurobiol. 2013 Aug;39(5):458-84. doi: 10.1111/nan.12020. DeLuca GC, 2013

      Eyles DW, Burne TH, McGrath JJ. Vitamin D, effects on brain development, adult brain function and the links between low levels of vitamin D and neuropsychiatric disease. Front Neuroendocrinol. 2013 Jan;34(1):47-64. doi: 10.1016/j.yfrne.2012.07.001. Epub 2012 Jul 11. Review. Eyles DW, 2013

      Furthermore, the vitamin D theory of autism explains most of the epidemiological facts of ASD.

      Cannell JJ. On the aetiology of autism. Acta Paediatr. 2010 Aug;99(8):1128-30. Cannell JJ, 2010

      Cannell JJ. Autism and vitamin D. Med Hypotheses. 2008;70(4):750-9. Cannell JJ, 2008

      70% of American toddlers do not take


      This comment, imported by Hypothesis from PubMed Commons, is licensed under CC BY.

    1. On 2013 Oct 31, John Cannell commented:

      The authors reported that immune system dysregulation is common in autism spectrum disorder (ASD”. Vitamin D deficiency produces very similar immune dysregulation.

      Prietl B, 2013

      Kamen DL, 2010

      Yang CY, 2013

      Baeke F, 2010

      Thus the vitamin D theory of ASD (vitamin D deficiency being the environmental risk factor for this highly heritable disorder) is consistent with the authors work. Three recent studies, using community controls, have found 25(OH)D levels are significantly lower in children with ASD. Two of the studies below (Mostafa et al and Gong et al) also found ASD severity, as rated on standard ASD rating scales, is inversely correlated with 25(OH)D levels. Mostafa et al found an R value of -.86 for the association of serum 25(OH)D with ASD severity.

      Gong ZL, Luo CM, Wang L, Shen L, Wei F, Tong RJ, Liu Y. Serum 25-hydroxyvitamin D levels in Chinese children with autism spectrum disorders. Neuroreport. 2013 Oct 1. Gong ZL, 2014

      Meguid NA, Hashish AF, Anwar M, Sidhom G. Reduced serum levels of 25-hydroxy and 1,25-dihydroxy vitamin D in Egyptian children with autism. J Altern Complement Med. 2010 Jun;16(6):641-5. Meguid NA, 2010

      Mostafa GA, Al-Ayadhi LY.Reduced serum concentrations of 25-hydroxy vitamin D in children with autism: relation to autoimmunity. J Neuroinflammation. 2012 Aug 17;9:201. Mostafa GA, 2012

      There is a plethora of basic science explaining why low gestational or early childhood 25(OH)D levels would adversely effect brain development.

      Eyles DW, Feron F, Cui X, Kesby JP, Harms LH, Ko P, McGrath JJ, Burne TH. Developmental vitamin D deficiency causes abnormal brain development. Psychoneuroendocrinology. 2009 Dec;34 Suppl 1:S247-57. doi: 10.1016/j.psyneuen.2009.04.015. Epub . Review. Eyles DW, 2009

      DeLuca GC, Kimball SM, Kolasinski J, Ramagopalan SV, Ebers GC. Review: the role of vitamin D in nervous system health and disease. Neuropathol Appl Neurobiol. 2013 Aug;39(5):458-84. doi: 10.1111/nan.12020. DeLuca GC, 2013

      Eyles DW, Burne TH, McGrath JJ. Vitamin D, effects on brain development, adult brain function and the links between low levels of vitamin D and neuropsychiatric disease. Front Neuroendocrinol. 2013 Jan;34(1):47-64. doi: 10.1016/j.yfrne.2012.07.001. Epub 2012 Jul 11. Review. Eyles DW, 2013

      Furthermore, the vitamin D theory of autism explains most of the epidemiological facts of ASD.

      Cannell JJ. On the aetiology of autism. Acta Paediatr. 2010 Aug;99(8):1128-30. Cannell JJ, 2010

      Cannell JJ. Autism and vitamin D. Med Hypotheses. 2008;70(4):750-9. Cannell JJ, 2008

      70% of American toddlers do not take the American Pediatric Association's recommended vitamin D supplement of 400 IU/day and few toddlers or pregnant women get any sunshine due to the sun scare. As vitamin D fortified milk consumption and sun exposure has declined, so have toddlers and pregnant women’s vitamin D levels. The dramatic increase in the incidence of ASD occurred during the same time vitamin D levels were falling in toddlers and pregnant women.

      Cannell JJ. Autism, will vitamin D treat core symptoms? Medical Hypotheses. 2013 Aug;81(2):195-8. Cannell JJ, 2013

      Some autism researchers seem cognizant of the entire body of autism research. For example, a group of well-known European ASD researchers, including Professor Christopher Gillberg of the Gillberg Neuropsychiatric Institute, have recently called for the need for “urgent research” into the vitamin D deficiency theory of ASD.

      Kočovská E, Fernell E, Billstedt E, Minnis H, Gillberg C. Vitamin D and autism: clinical review. Res Dev Disabil. 2012 Sep-Oct;33(5):1541-50. doi: 10.1016/j.ridd.2012.02.015. Epub 2012 Apr 21.Kočovská E, 2012

      Until all autism researchers become cognizant of the wider body of scientific research, we will continue to wonder how to prevent - and perhaps even treat - this modern day plague.

      John J Cannell, MD

      Vitamin D Council

      http://www.vitamindcouncil.org


      This comment, imported by Hypothesis from PubMed Commons, is licensed under CC BY.

    1. On 2013 Oct 31, John Cannell commented:

      The authors found markers oxidative stress is present in autism spectrum disorder (ASD). I wonder if the authors are aware that the genes for the antioxidants superoxide dismutase and thioredoxin reductase are directly up-regulated by the secosteroid 1,25 di-hydroxy vitamin D3 (calcitriol). I believe both genes also harbor a vitamin D response element.

      Peehl DM, Shinghal R, Nonn L, Seto E, Krishnan AV, Brooks JD, Feldman D. Molecular activity of 1,25‐dihydroxyvitamin D3 in primary cultures of human prostatic epithelial cells revealed by cDNA microarray analysis. J. Steroid Biochem Mol. Biol 2004;92:131–141. PMID:15555907>

      Calcitriol also directly up-regulates glutathione reductase and increases glutathione levels.

      Jain SK, et alo. Vitamin D upregulates glutamate cysteine ligase and glutathione reductase, and GSH formation, and decreases ROS and MCP-1 and IL-8 secretion in high-glucose exposed U937 monocytes. Biochem Biophys Res Commun. 2013 Jul 19;437(1):7-11. doi: 10.1016/j.bbrc.2013.06.004. Jain SK, 2013

      Also, supplemental vitamin D significantly reduces oxidative stress in humans.

      Nikooyeh B, et al. Daily intake of vitamin D- or calcium-vitamin D-fortified Persian yogurt drink (doogh) attenuates diabetes-induced oxidative stress: evidence for antioxidative properties of vitamin D.J Hum Nutr Diet. 2013 Jul 5. doi: 10.1111/jhn.12142. Nikooyeh B, 2014

      Asemi Z, et al. Vitamin D supplementation affects serum high-sensitivity C-reactive protein, insulin resistance, and biomarkers of oxidative stress in pregnant women. J Nutr. 2013 Sep;143(9):1432-8. doi: 10.3945/jn.113.177550. Asemi Z, 2013

      Thus the vitamin D theory of ASD (vitamin D deficiency being the environmental risk factor for this highly heritable disorder) is consistent with the authors work. Three recent studies, using community controls, have found 25(OH)D levels are significantly lower in children with ASD. Two of the studies below (Mostafa et al and Gong et al) also found ASD severity, as rated on standard ASD rating scales, is inversely correlated with 25(OH)D levels. Mostafa et al found an R value of -.86 for the association of serum 25(OH)D with ASD severity.

      Gong ZL, Luo CM, Wang L, Shen L, Wei F, Tong RJ, Liu Y. Serum 25-hydroxyvitamin D levels in Chinese children with autism spectrum disorders. Neuroreport. 2013 Oct 1. Gong ZL, 2014

      Meguid NA, Hashish AF, Anwar M, Sidhom G. Reduced serum levels of 25-hydroxy and 1,25-dihydroxy vitamin D in Egyptian children with autism. J Altern Complement Med. 2010 Jun;16(6):641-5. Meguid NA, 2010

      Mostafa GA, Al-Ayadhi LY.Reduced serum concentrations of 25-hydroxy vitamin D in children with autism: relation to autoimmunity. J Neuroinflammation. 2012 Aug 17;9:201. Mostafa GA, 2012

      There is a plethora of basic science explaining why low gestational or early childhood 25(OH)D levels would adversely effect brain development.

      Eyles DW, Feron F, Cui X, Kesby JP, Harms LH, Ko P, McGrath JJ, Burne TH. Developmental vitamin D deficiency causes abnormal brain development. Psychoneuroendocrinology. 2009 Dec;34 Suppl 1:S247-57. doi: 10.1016/j.psyneuen.2009.04.015. Epub . Review. Eyles DW, 2009

      DeLuca GC, Kimball SM, Kolasinski J, Ramagopalan SV, Ebers GC. Review: the role of vitamin D in nervous system health and disease. Neuropathol Appl Neurobiol. 2013 Aug;39(5):458-84. doi: 10.1111/nan.12020. DeLuca GC, 2013

      Eyles DW, Burne TH, McGrath JJ. Vitamin D, effects on brain development, adult brain function and the links between low levels of vitamin D and neuropsychiatric disease. Front Neuroendocrinol. 2013 Jan;34(1):47-64. doi: 10.1016/j.yfrne.2012.07.001. Epub 2012 Jul 11. Review. Eyles DW, 2013

      Furthermore, the vitamin D theory of autism explains most of the epidemiological facts of ASD.

      Cannell JJ. On the aetiology of autism. Acta Paediatr. 2010 Aug;99(8):1128-30. Cannell JJ, 2010

      Cannell JJ. Autism and vitamin D. Med Hypotheses. 2008;70(4):750-9. Cannell JJ, 2008

      70% of American toddlers do not take the Ameri


      This comment, imported by Hypothesis from PubMed Commons, is licensed under CC BY.

    1. On 2013 Oct 31, John Cannell commented:

      The authors reported that immune system dysregulation is common in autism spectrum disorder (ASD”. Vitamin D deficiency produces very similar immune dysregulation.

      Prietl B, 2013

      < PMID:20119827>

      < PMID:23359064>

      < PMID:20427238>

      Thus the vitamin D theory of ASD (vitamin D deficiency being the environmental risk factor for this highly heritable disorder) is consistent with the authors work. Three recent studies, using community controls, have found 25(OH)D levels are significantly lower in children with ASD. Two of the studies below (Mostafa et al and Gong et al) also found ASD severity, as rated on standard ASD rating scales, is inversely correlated with 25(OH)D levels. Mostafa et al found an R value of -.86 for the association of serum 25(OH)D with ASD severity.

      Gong ZL, Luo CM, Wang L, Shen L, Wei F, Tong RJ, Liu Y. Serum 25-hydroxyvitamin D levels in Chinese children with autism spectrum disorders. Neuroreport. 2013 Oct 1. Gong ZL, 2014

      Meguid NA, Hashish AF, Anwar M, Sidhom G. Reduced serum levels of 25-hydroxy and 1,25-dihydroxy vitamin D in Egyptian children with autism. J Altern Complement Med. 2010 Jun;16(6):641-5. Meguid NA, 2010

      Mostafa GA, Al-Ayadhi LY.Reduced serum concentrations of 25-hydroxy vitamin D in children with autism: relation to autoimmunity. J Neuroinflammation. 2012 Aug 17;9:201. Mostafa GA, 2012

      There is a plethora of basic science explaining why low gestational or early childhood 25(OH)D levels would adversely effect brain development.

      Eyles DW, Feron F, Cui X, Kesby JP, Harms LH, Ko P, McGrath JJ, Burne TH. Developmental vitamin D deficiency causes abnormal brain development. Psychoneuroendocrinology. 2009 Dec;34 Suppl 1:S247-57. doi: 10.1016/j.psyneuen.2009.04.015. Epub . Review. Eyles DW, 2009

      DeLuca GC, Kimball SM, Kolasinski J, Ramagopalan SV, Ebers GC. Review: the role of vitamin D in nervous system health and disease. Neuropathol Appl Neurobiol. 2013 Aug;39(5):458-84. doi: 10.1111/nan.12020. DeLuca GC, 2013

      Eyles DW, Burne TH, McGrath JJ. Vitamin D, effects on brain development, adult brain function and the links between low levels of vitamin D and neuropsychiatric disease. Front Neuroendocrinol. 2013 Jan;34(1):47-64. doi: 10.1016/j.yfrne.2012.07.001. Epub 2012 Jul 11. Review. Eyles DW, 2013

      Furthermore, the vitamin D theory of autism explains most of the epidemiological facts of ASD.

      Cannell JJ. On the aetiology of autism. Acta Paediatr. 2010 Aug;99(8):1128-30. Cannell JJ, 2010

      Cannell JJ. Autism and vitamin D. Med Hypotheses. 2008;70(4):750-9. Cannell JJ, 2008

      70% of American toddlers do not take the American Pediatric Association's recommended vitamin D supplement of 400 IU/day and few toddlers or pregnant women get any sunshine due to the sun scare. As vitamin D fortified milk consumption and sun exposure has declined, so have toddlers and pregnant women’s vitamin D levels. The dramatic increase in the incidence of ASD occurred during the same time vitamin D levels were falling in toddlers and pregnant women.

      Cannell JJ. Autism, will vitamin D treat core symptoms? Medical Hypotheses. 2013 Aug;81(2):195-8. Cannell JJ, 2013

      Some autism researchers seem cognizant of the entire body of autism research. For example, a group of well-known European ASD researchers, including Professor Christopher Gillberg of the Gillberg Neuropsychiatric Institute, have recently called for the need for “urgent research” into the vitamin D deficiency theory of ASD.

      Kočovská E, Fernell E, Billstedt E, Minnis H, Gillberg C. Vitamin D and autism: clinical review. Res Dev Disabil. 2012 Sep-Oct;33(5):1541-50. doi: 10.1016/j.ridd.2012.02.015. Epub 2012 Apr 21.Kočovská E, 2012

      Until all autism researchers become cognizant of the wider body of scientific research, we will continue to wonder how to prevent - and perhaps even treat - this modern day plague.

      John J Cannell, MD

      Vitamin D Council

      http://www.vitamindcouncil.org


      This comment, imported by Hypothesis from PubMed Commons, is licensed under CC BY.

    1. On 2013 Oct 31, John Cannell commented:

      The authors stated that markers of oxidative stress are present in autism spectrum disorder (ASD). I wonder if the authors are aware that the genes for the antioxidants superoxide dismutase and thioredoxin reductase are directly up-regulated by the secosteroid 1,25 di-hydroxy vitamin D3 (calcitriol). I believe both genes also harbor a vitamin D response element.

      Peehl DM, Shinghal R, Nonn L, Seto E, Krishnan AV, Brooks JD, Feldman D. Molecular activity of 1,25‐dihydroxyvitamin D3 in primary cultures of human prostatic epithelial cells revealed by cDNA microarray analysis. J. Steroid Biochem Mol. Biol 2004;92:131–141. PMID:15555907>

      Calcitriol also directly up-regulates glutathione reductase and increases glutathione levels.

      Jain SK, et alo. Vitamin D upregulates glutamate cysteine ligase and glutathione reductase, and GSH formation, and decreases ROS and MCP-1 and IL-8 secretion in high-glucose exposed U937 monocytes. Biochem Biophys Res Commun. 2013 Jul 19;437(1):7-11. doi: 10.1016/j.bbrc.2013.06.004. Jain SK, 2013

      Also, supplemental vitamin D significantly reduces oxidative stress in humans.

      Nikooyeh B, et al. Daily intake of vitamin D- or calcium-vitamin D-fortified Persian yogurt drink (doogh) attenuates diabetes-induced oxidative stress: evidence for antioxidative properties of vitamin D.J Hum Nutr Diet. 2013 Jul 5. doi: 10.1111/jhn.12142. Nikooyeh B, 2014

      Asemi Z, et al. Vitamin D supplementation affects serum high-sensitivity C-reactive protein, insulin resistance, and biomarkers of oxidative stress in pregnant women. J Nutr. 2013 Sep;143(9):1432-8. doi: 10.3945/jn.113.177550. Asemi Z, 2013

      Thus the vitamin D theory of ASD (vitamin D deficiency being the environmental risk factor for this highly heritable disorder) is consistent with the authors work. Three recent studies, using community controls, have found 25(OH)D levels are significantly lower in children with ASD. Two of the studies below (Mostafa et al and Gong et al) also found ASD severity, as rated on standard ASD rating scales, is inversely correlated with 25(OH)D levels. Mostafa et al found an R value of -.86 for the association of serum 25(OH)D with ASD severity.

      Gong ZL, Luo CM, Wang L, Shen L, Wei F, Tong RJ, Liu Y. Serum 25-hydroxyvitamin D levels in Chinese children with autism spectrum disorders. Neuroreport. 2013 Oct 1. Gong ZL, 2014

      Meguid NA, Hashish AF, Anwar M, Sidhom G. Reduced serum levels of 25-hydroxy and 1,25-dihydroxy vitamin D in Egyptian children with autism. J Altern Complement Med. 2010 Jun;16(6):641-5. Meguid NA, 2010

      Mostafa GA, Al-Ayadhi LY.Reduced serum concentrations of 25-hydroxy vitamin D in children with autism: relation to autoimmunity. J Neuroinflammation. 2012 Aug 17;9:201. Mostafa GA, 2012

      There is a plethora of basic science explaining why low gestational or early childhood 25(OH)D levels would adversely effect brain development.

      Eyles DW, Feron F, Cui X, Kesby JP, Harms LH, Ko P, McGrath JJ, Burne TH. Developmental vitamin D deficiency causes abnormal brain development. Psychoneuroendocrinology. 2009 Dec;34 Suppl 1:S247-57. doi: 10.1016/j.psyneuen.2009.04.015. Epub . Review. Eyles DW, 2009

      DeLuca GC, Kimball SM, Kolasinski J, Ramagopalan SV, Ebers GC. Review: the role of vitamin D in nervous system health and disease. Neuropathol Appl Neurobiol. 2013 Aug;39(5):458-84. doi: 10.1111/nan.12020. DeLuca GC, 2013

      Eyles DW, Burne TH, McGrath JJ. Vitamin D, effects on brain development, adult brain function and the links between low levels of vitamin D and neuropsychiatric disease. Front Neuroendocrinol. 2013 Jan;34(1):47-64. doi: 10.1016/j.yfrne.2012.07.001. Epub 2012 Jul 11. Review. Eyles DW, 2013

      Furthermore, the vitamin D theory of autism explains most of the epidemiological facts of ASD.

      Cannell JJ. On the aetiology of autism. Acta Paediatr. 2010 Aug;99(8):1128-30. Cannell JJ, 2010

      Cannell JJ. Autism and vitamin D. Med Hypotheses. 2008;70(4):750-9. Cannell JJ, 2008

      70% of American toddlers do not take


      This comment, imported by Hypothesis from PubMed Commons, is licensed under CC BY.

    1. On 2015 Apr 06, Peter Good commented:

      To PubMed Commons: comment to Frye RE, 2013.<br> Frye et al. [2010] previously reported that sapropterin, a synthetic form of tetrahydrobiopterin (BH4), improved behavior in children with autism spectrum disorders (ASD) [Frye RE, 2010]. Their 2013 study [Frye RE, 2013] was intended to test whether sapropterin’s benefit was due to BH4’s role as cofactor for synthesis of the monoamine neurotransmitters dopamine and serotonin (as previous investigators suspected), or BH4’s role as cofactor for nitric oxide synthase (NOS), which produces the critical gaseous molecule nitric oxide (NO). Frye et al. concluded that improvements in communicative language in these children from sapropterin were due to restoration of NOS “coupling” disrupted by lack of BH4, which dysregulated nitric oxide metabolism. In support of their conclusion they cited evidence by Sweeten et al. [Sweeten TL, 2004] and others of high levels of nitric oxide metabolites nitrite and nitrate in blood of ASD children. In their previous study Frye et al. concluded: “[I]t is possible that BH4 in ASD could be depleted by the overactivation of the immune system and inflammatory processes during an excessive production of nitric oxide.” [Frye RE, 2010]

      There may, however, be more to this story. A few months after publication of Frye et al. 2013, Stanhewicz et al. reported sapropterin increased reflex vasodilation in aging human skin by increasing release of nitric oxide by endothelial and neuronal nitric oxide synthases [Stanhewicz AE, 2013]. Nitric oxide, the primary dilator of blood vessels in the body, is produced by three different forms of nitric oxide synthase – two constitutive forms present in blood vessel endothelial cells (eNOS) and neurons (nNOS), and a third form (iNOS) induced in brain microglia and other cells of the immune system in response to infections and other agencies. Endothelial nitric oxide maintains the vasodilator tone of blood vessels. Neuronal nitric oxide may be largely responsible for neurovascular coupling – dilation of nearby blood vessels when brain neurons fire. Faraci & Brian: “. . . NO appears to mediate cerebral vasodilatation in response to local neuronal activation.” [Faraci FM, 1994]. Koehler et al.: “. . . NO is required as a mediator of neurovascular coupling in the cerebellum, whereas NO acts as a modulator in the cerebral cortex.” [Koehler RC, 2009]. Inducible nitric oxide is released in large quantities to flush infective agents and toxins, and kill damaged cells.

      If nitric oxide is too high in autistic disorders, inducible nitric oxide is the form likely responsible, Frye et al. concluded. Sweeten et al. concluded likewise: “[I]t is reasonable to hypothesize that iNOS is involved in the elevated NO production in autism.” [Sweeten TL, 2004]. Yet inducible nitric oxide is often released to compensate deficiencies of constitutive nitric oxide [Hecker M, 1999;Kubes P, 2000]. One indication neuronal nitric oxide is deficient in children with autistic disorders is their failure of neurovascular coupling – their brains are often hyperexcitable, yet brain blood flow is consistently low [e.g. Ohnishi T, 2000]. Nitrite and nitrate also serve as reservoir forms to deliver nitric oxide elsewhere [Dejam A, 2005]. Lundberg & Weitzberg: “[N]itrate and nitrite should probably be viewed as storage pools for NO rather than inert waste products.” [Lundberg JO, 2005].

      Did sapropterin increase endothelial and neuronal nitric oxide in the brains of ASD children in Frye et al. 2013? Why would endothelial and neuronal nitric oxide be deficient in these children? One explanation is deficiency of BH4. Another is deficiency of the amino acid arginine – only substrate for nitric oxide [Wiesinger H, 2001]. Frye et al. found higher baseline levels of blood arginine in these children, and higher ratios of arginine to citrulline, were associated with greater improvements in language from sapropterin. They noted blood arginine and the arginine/citrulline ratio did not change significantly during sapropterin treatment – but also stated improvements in language were greater in children with “an attenuated increase in arginine.” [Frye RE, 2013]

      Considerable evidence argues that arginine is deficient in ASD children: (a) high levels of inducible nitric oxide; (b) consistently low brain creatine (arginine + glycine) [Friedman SD, 2003]; (c) frequent high blood ammonia [Filipek PA, 2004] which requires arginine to detoxify to urea; and (d) high levels of arginine vasopressin in autistic boys [Carter CS, 2007; Momeni N, 2005]. Furthermore, NOS produces harmful oxidants superoxide and peroxynitrite when NOS “uncouples” from lack of BH4 – or when arginine is deficient [Xia Y, 1996]. Because most supplemental arginine is taken up by the liver (thus unavailable to other tissues), citrulline (arginine’s precursor) or glutamine (citrulline’s precursor) may be better sources of arginine for NOS [Cynober L, 2010]. The evidence speaks for itself.

      Peter Good Autism Studies La Pine, OR www.autismstudies.net autismstudies1@gmail.com

      Carter CS. Sex differences in oxytocin and vasopressin: implications for autism spectrum disorders? Behav Brain Res 2007;176:170–186.

      Cynober L, Moinard C, De Bandt J. The 2009 ESPEN Sir David Cuthbertson. Citrulline: A new major signaling molecule or just another player in the pharmaconutrition game? Clinical Nutrition 2010;29:545–551.

      Dejam A, Hunter CJ, Pelletier MM, et al. Erythrocytes are the major intravascular storage sites of nitrite in human blood. Blood 2005;106:734–739.

      Faraci FM, Brian Jr. JE. Nitric oxide and the cerebral circulation. Stroke 1994;25:692–703.

      Filipek PA, Juranek J, Nguyen MT, et al. Relative carnitine deficiency in autism. J Autism Dev Disord 2004;34:615–623.

      Friedman SD, Shaw DW, Artru AA, et al. Regional brain chemical alterations in young children with autism spectrum disorder. Neurology 2003;60:100–107.

      Frye RE, Huffman LC, Elliott GR. Tetrahydrobiopterin as a novel therapeutic intervention for autism. Neurotherapeutics. 2010;7(3):241–249.

      Hecker M, Cattaruzza M, Wagner AH. Regulation of inducible nitric oxide synthase gene expression in vascular smooth muscle cells. Gen Pharmacol 1999;32:9–16.

      Koehler RC, Roman RJ, Harder DR. Astrocytes and the regulation of cerebral blood flow. TINS 2009;32(3):160–169.

      Kubes P. Inducible nitric oxide synthase – a little bit of good in all of us. Glia 2000;47:6–9.

      Lundberg JO, Weitzberg E. NO generation from nitrite and its role in vascular control. Arterioscler Thromb Vasc Biol 2005;25:915–922.

      Momeni N, Nordström BM, Horstmann V, et al. Alterations of prolyl endopeptidase activity in the plasma of children with autistic spectrum disorders. BMC Psychiatry 2005;5:27–32.

      Ohnishi T, Matsuda H, Hashimoto T, et al. Abnormal regional cerebral blood flow in childhood autism. Brain 2000;123(Pt. 9):1838–1844.

      Stanhewicz AE, Alexander LM, Kenney WL. Oral sapropterin acutely augments reflex vasodilation in aged human skin through nitric oxide-dependent mechanisms. J Appl Physiol 2013:115:972–978.

      Sweeten TL, Posey DJ, Shankar S, McDougle CJ. High nitric oxide production in autistic disorder: a possible role for interferon-gamma. Biol Psychiatry 2004;55(4):434–437.

      Wiesinger H. Arginine metabolism and the synthesis of nitric oxide in the nervous system. Prog Neurobiol 2001;64(4):365–391.

      Xia Y, Dawson VL, Dawson TM, et al. Nitric oxide synthase generates superoxide and nitric oxide in arginine-depleted cells leading to peroxynitrite-mediated cellular injury. Proc Natl Acad Sci USA 1996;93:6770–6774.


      This comment, imported by Hypothesis from PubMed Commons, is licensed under CC BY.

    1. On 2013 Oct 31, John Cannell commented:

      The authors reported that immune system dysregulation is common in autism spectrum disorder (ASD”. Vitamin D deficiency produces very similar immune dysregulation.

      Prietl B, 2013

      Kamen DL, 2010

      Yang CY, 2013

      Baeke F, 2010

      Thus the vitamin D theory of ASD (vitamin D deficiency being the environmental risk factor for this highly heritable disorder) is consistent with the authors work. Three recent studies, using community controls, have found 25(OH)D levels are significantly lower in children with ASD. Two of the studies below (Mostafa et al and Gong et al) also found ASD severity, as rated on standard ASD rating scales, is inversely correlated with 25(OH)D levels. Mostafa et al found an R value of -.86 for the association of serum 25(OH)D with ASD severity.

      Gong ZL, Luo CM, Wang L, Shen L, Wei F, Tong RJ, Liu Y. Serum 25-hydroxyvitamin D levels in Chinese children with autism spectrum disorders. Neuroreport. 2013 Oct 1. Gong ZL, 2014

      Meguid NA, Hashish AF, Anwar M, Sidhom G. Reduced serum levels of 25-hydroxy and 1,25-dihydroxy vitamin D in Egyptian children with autism. J Altern Complement Med. 2010 Jun;16(6):641-5. Meguid NA, 2010

      Mostafa GA, Al-Ayadhi LY.Reduced serum concentrations of 25-hydroxy vitamin D in children with autism: relation to autoimmunity. J Neuroinflammation. 2012 Aug 17;9:201. Mostafa GA, 2012

      There is a plethora of basic science explaining why low gestational or early childhood 25(OH)D levels would adversely effect brain development.

      Eyles DW, Feron F, Cui X, Kesby JP, Harms LH, Ko P, McGrath JJ, Burne TH. Developmental vitamin D deficiency causes abnormal brain development. Psychoneuroendocrinology. 2009 Dec;34 Suppl 1:S247-57. doi: 10.1016/j.psyneuen.2009.04.015. Epub . Review. Eyles DW, 2009

      DeLuca GC, Kimball SM, Kolasinski J, Ramagopalan SV, Ebers GC. Review: the role of vitamin D in nervous system health and disease. Neuropathol Appl Neurobiol. 2013 Aug;39(5):458-84. doi: 10.1111/nan.12020. DeLuca GC, 2013

      Eyles DW, Burne TH, McGrath JJ. Vitamin D, effects on brain development, adult brain function and the links between low levels of vitamin D and neuropsychiatric disease. Front Neuroendocrinol. 2013 Jan;34(1):47-64. doi: 10.1016/j.yfrne.2012.07.001. Epub 2012 Jul 11. Review. Eyles DW, 2013

      Furthermore, the vitamin D theory of autism explains most of the epidemiological facts of ASD.

      Cannell JJ. On the aetiology of autism. Acta Paediatr. 2010 Aug;99(8):1128-30. Cannell JJ, 2010

      Cannell JJ. Autism and vitamin D. Med Hypotheses. 2008;70(4):750-9. Cannell JJ, 2008

      70% of American toddlers do not take the American Pediatric Association's recommended vitamin D supplement of 400 IU/day and few toddlers or pregnant women get any sunshine due to the sun scare. As vitamin D fortified milk consumption and sun exposure has declined, so have toddlers and pregnant women’s vitamin D levels. The dramatic increase in the incidence of ASD occurred during the same time vitamin D levels were falling in toddlers and pregnant women.

      Cannell JJ. Autism, will vitamin D treat core symptoms? Medical Hypotheses. 2013 Aug;81(2):195-8. Cannell JJ, 2013

      Some autism researchers seem cognizant of the entire body of autism research. For example, a group of well-known European ASD researchers, including Professor Christopher Gillberg of the Gillberg Neuropsychiatric Institute, have recently called for the need for “urgent research” into the vitamin D deficiency theory of ASD.

      Kočovská E, Fernell E, Billstedt E, Minnis H, Gillberg C. Vitamin D and autism: clinical review. Res Dev Disabil. 2012 Sep-Oct;33(5):1541-50. doi: 10.1016/j.ridd.2012.02.015. Epub 2012 Apr 21.Kočovská E, 2012

      Until all autism researchers become cognizant of the wider body of scientific research, we will continue to wonder how to prevent - and perhaps even treat - this modern day plague.

      John J Cannell, MD

      Vitamin D Council

      http://www.vitamindcouncil.org


      This comment, imported by Hypothesis from PubMed Commons, is licensed under CC BY.

    1. On 2013 Oct 31, John Cannell commented:

      The authors reported that immune system dysregulation is common in autism spectrum disorder (ASD”. Vitamin D deficiency produces very similar immune dysregulation.

      Prietl B, 2013

      Kamen DL, 2010

      Yang CY, 2013

      Baeke F, 2010

      Thus the vitamin D theory of ASD (vitamin D deficiency being the environmental risk factor for this highly heritable disorder) is consistent with the authors work. Three recent studies, using community controls, have found 25(OH)D levels are significantly lower in children with ASD. Two of the studies below (Mostafa et al and Gong et al) also found ASD severity, as rated on standard ASD rating scales, is inversely correlated with 25(OH)D levels. Mostafa et al found an R value of -.86 for the association of serum 25(OH)D with ASD severity.

      Gong ZL, Luo CM, Wang L, Shen L, Wei F, Tong RJ, Liu Y. Serum 25-hydroxyvitamin D levels in Chinese children with autism spectrum disorders. Neuroreport. 2013 Oct 1. Gong ZL, 2014

      Meguid NA, Hashish AF, Anwar M, Sidhom G. Reduced serum levels of 25-hydroxy and 1,25-dihydroxy vitamin D in Egyptian children with autism. J Altern Complement Med. 2010 Jun;16(6):641-5. Meguid NA, 2010

      Mostafa GA, Al-Ayadhi LY.Reduced serum concentrations of 25-hydroxy vitamin D in children with autism: relation to autoimmunity. J Neuroinflammation. 2012 Aug 17;9:201. Mostafa GA, 2012

      There is a plethora of basic science explaining why low gestational or early childhood 25(OH)D levels would adversely effect brain development.

      Eyles DW, Feron F, Cui X, Kesby JP, Harms LH, Ko P, McGrath JJ, Burne TH. Developmental vitamin D deficiency causes abnormal brain development. Psychoneuroendocrinology. 2009 Dec;34 Suppl 1:S247-57. doi: 10.1016/j.psyneuen.2009.04.015. Epub . Review. Eyles DW, 2009

      DeLuca GC, Kimball SM, Kolasinski J, Ramagopalan SV, Ebers GC. Review: the role of vitamin D in nervous system health and disease. Neuropathol Appl Neurobiol. 2013 Aug;39(5):458-84. doi: 10.1111/nan.12020. DeLuca GC, 2013

      Eyles DW, Burne TH, McGrath JJ. Vitamin D, effects on brain development, adult brain function and the links between low levels of vitamin D and neuropsychiatric disease. Front Neuroendocrinol. 2013 Jan;34(1):47-64. doi: 10.1016/j.yfrne.2012.07.001. Epub 2012 Jul 11. Review. Eyles DW, 2013

      Furthermore, the vitamin D theory of autism explains most of the epidemiological facts of ASD.

      Cannell JJ. On the aetiology of autism. Acta Paediatr. 2010 Aug;99(8):1128-30. Cannell JJ, 2010

      Cannell JJ. Autism and vitamin D. Med Hypotheses. 2008;70(4):750-9. Cannell JJ, 2008

      70% of American toddlers do not take the American Pediatric Association's recommended vitamin D supplement of 400 IU/day and few toddlers or pregnant women get any sunshine due to the sun scare. As vitamin D fortified milk consumption and sun exposure has declined, so have toddlers and pregnant women’s vitamin D levels. The dramatic increase in the incidence of ASD occurred during the same time vitamin D levels were falling in toddlers and pregnant women.

      Cannell JJ. Autism, will vitamin D treat core symptoms? Medical Hypotheses. 2013 Aug;81(2):195-8. Cannell JJ, 2013

      Some autism researchers seem cognizant of the entire body of autism research. For example, a group of well-known European ASD researchers, including Professor Christopher Gillberg of the Gillberg Neuropsychiatric Institute, have recently called for the need for “urgent research” into the vitamin D deficiency theory of ASD.

      Kočovská E, Fernell E, Billstedt E, Minnis H, Gillberg C. Vitamin D and autism: clinical review. Res Dev Disabil. 2012 Sep-Oct;33(5):1541-50. doi: 10.1016/j.ridd.2012.02.015. Epub 2012 Apr 21.Kočovská E, 2012

      Until all autism researchers become cognizant of the wider body of scientific research, we will continue to wonder how to prevent - and perhaps even treat - this modern day plague.

      John J Cannell, MD

      Vitamin D Council

      http://www.vitamindcouncil.org


      This comment, imported by Hypothesis from PubMed Commons, is licensed under CC BY.

    1. On 2014 Apr 05, Andrea Messori commented:

      Incidence of new vertebral fractures in women treated with an antireabsorptive agent or placebo: re-analysis of 9 randomized trials

      In the study of anti-reabsorptive agents for preventing vertebral fractures in women with post-menopausal osteoporosis, the systematic review published by Migliore et al[1] is the most recent contribution in this area and has also the merit that mixed treatment comparisons were carried out.

      One limitation of the study by Migliore et al[1] is that, in studying the end-point of new vertebral fractures according to 9 randomized placebo-controlled trials [2-10], the crude event rates were not presented for individual trials. In fact, only the denominators of these rates were reported (see Table I of the publication by Migliore et al[1]). In addition, these denominators were affected by some typographical errors (eg. see the number of patients enrolled in the placebo arm of the trial by Lieberman et al. [3], N=42, which is erroneous and seems to be an inadvertent duplicate presentation of the age of the same patients).

      We have previously stressed that the crude event rates extracted from individual trials should be reported in any meta-analysis study [11] because this presentation allows us to verify the quality of the extraction process and the reliability of the final results.

      We have therefore re-extracted the event rates from the 9 trials [2-10] and we have reanalyzed these rates by redoing the same meta-analysis carried out by Migliore et al.[1] (see their Table II, first five comparisons vs placebo). Our analysis was based on the random-effect model as implemented in the OMA software [12]. We expressed our results as both odds-ratio and relative risk.

      Figure 1 shows the results of this re-analysis. Our results are nearly identical to those published by Migliore et al. [1] and can therefore be seen as a useful confirmation of the findings of the referenced study.

      Andrea Messori HTA Unit ESTAV Centro 50100 Firenze Italy

      FIGURE 1 - Incidence of new vertebral fractures in women treated with an anti-reabsorptive agent or placebo.

      The Forest plot shows the subgroup analysis for 5 treatments (alendronate, risedronate, zolendronate, ibandronate, and denosumab) compared with placebo. The original material was derived from 9 randomized trials [2-10]. The meta-analysis results are expressed as odds-ratio (Panel A) and relative risk (Panel B).<br> Abbreviations and symbols: horizontal black lines represent the 95CI% around the event rate (■); yellow diamonds represent the pooled (meta-analytical) rate with its 95%CI for the various subgroups, while the blue diamond represents the pooled overall rate across the two subgroups. The vertical dotted line (in red) represents the pooled rate from the overall series of 9 trials. I<sup>2</sup> is the index of heterogeneity and is accompanied by the p-value of its statistical significance. Abbreviations: RR, relative risk; Ev, number of events; Trt, number of patients in the treatment group; Ctrl, number of patient in the control group; ALE, alendronate; RIS, risedronate,; ZOL, zolendronate; IBA, ibandronate; DEN, denosumab.

      This figure can be downloaded at the address: http://www.osservatorioinnovazione.net/papers/migliore2013fig1.jpg

      References

      1. Migliore A, Broccoli S, Massafra U, Cassol M, Frediani B. Ranking antireabsorptive agents to prevent vertebral fractures in postmenopausal osteoporosis by mixed treatment comparison meta-analysis. Eur Rev Med Pharmacol Sci. 2013 Mar;17(5):658-67.

      2. Black DM, Cummings SR, Karpf DB, Cauley JA, Thompson DE, Nevitt MC, Bauer DC, Genant HK, Haskell WL, Marcus R, Ott SM, Torner JC, Quandt SA, Reiss TF, Ensrud KE. Randomised trial of effect of alendronate on risk of fracture in women with existing vertebral fractures. Fracture Intervention Trial Research Group. Lancet. 1996 Dec 7;348(9041):1535-41. PubMed PMID: 8950879.

      3. Liberman UA, Weiss SR, Bröll J, Minne HW, Quan H, Bell NH, Rodriguez-Portales J, Downs RW Jr, Dequeker J, Favus M. Effect of oral alendronate on bone mineral density and the incidence of fractures in postmenopausal osteoporosis. The Alendronate Phase III Osteoporosis Treatment Study Group. N Engl J Med. 1995 Nov 30;333(22):1437-43. PubMed PMID: 7477143.

      4. Cummings SR, Black DM, Thompson DE, Applegate WB, Barrett-Connor E, Musliner TA, Palermo L, Prineas R, Rubin SM, Scott JC, Vogt T, Wallace R, Yates AJ, LaCroix AZ. Effect of alendronate on risk of fracture in women with low bone density but without vertebral fractures: results from the Fracture Intervention Trial. JAMA. 1998 Dec 23-30;280(24):2077-82. PubMed PMID: 9875874.

      5. Harris ST, Watts NB, Genant HK, McKeever CD, Hangartner T, Keller M, Chesnut CH 3rd, Brown J, Eriksen EF, Hoseyni MS, Axelrod DW, Miller PD. Effects of risedronate treatment on vertebral and nonvertebral fractures in women with postmenopausal osteoporosis: a randomized controlled trial. Vertebral Efficacy With Risedronate Therapy (VERT) Study Group. JAMA. 1999 Oct 13;282(14):1344-52. PubMed PMID: 10527181.

      6. Reginster J, Minne HW, Sorensen OH, Hooper M, Roux C, Brandi ML, Lund B, Ethgen D, Pack S, Roumagnac I, Eastell R. Randomized trial of the effects of risedronate on vertebral fractures in women with established postmenopausal osteoporosis. Vertebral Efficacy with Risedronate Therapy (VERT) Study Group. Osteoporos Int. 2000;11(1):83-91. PubMed PMID: 10663363.

      7. Black DM, Delmas PD, Eastell R, Reid IR, Boonen S, Cauley JA, Cosman F, Lakatos P, Leung PC, Man Z, Mautalen C, Mesenbrink P, Hu H, Caminis J, Tong K, Rosario-Jansen T, Krasnow J, Hue TF, Sellmeyer D, Eriksen EF, Cummings SR; HORIZON Pivotal Fracture Trial. Once-yearly zoledronic acid for treatment of postmenopausal osteoporosis. N Engl J Med. 2007 May 3;356(18):1809-22. PubMed PMID: 17476007.

      8. Lyles KW, Colón-Emeric CS, Magaziner JS, Adachi JD, Pieper CF, Mautalen C, Hyldstrup L, Recknor C, Nordsletten L, Moore KA, Lavecchia C, Zhang J, Mesenbrink P, Hodgson PK, Abrams K, Orloff JJ, Horowitz Z, Eriksen EF, Boonen S; HORIZON Recurrent Fracture Trial. Zoledronic acid and clinical fractures and mortality after hip fracture. N Engl J Med. 2007 Nov 1;357(18):1799-809. Epub 2007 Sep 17. PubMed PMID: 17878149.

      9. Chesnut III CH, Skag A, Christiansen C, Recker R, Stakkestad JA, Hoiseth A, Felsenberg D, Huss H, Gilbride J, Schimmer RC, Delmas PD; Oral Ibandronate Osteoporosis Vertebral Fracture Trial in North America and Europe (BONE). Effects of oral ibandronate administered daily or intermittently on fracture risk in postmenopausal osteoporosis. J Bone Miner Res. 2004 Aug;19(8):1241-9. Epub 2004 Mar 29. PubMed PMID: 15231010.

      10. Cummings SR, San Martin J, McClung MR, Siris ES, Eastell R, Reid IR, Delmas P, Zoog HB, Austin M, Wang A, Kutilek S, Adami S, Zanchetta J, Libanati C, Siddhanti S, Christiansen C; FREEDOM Trial. Denosumab for prevention of fractures in postmenopausal women with osteoporosis. N Engl J Med. 2009 Aug 20;361(8):756-65. doi: 10.1056/NEJMoa0809493. Epub 2009 Aug 11. Erratum in: N Engl J Med. 2009 Nov 5;361(19):1914. PubMed PMID: 19671655.

      11. Messori A, Fadda V, Maratea D, Trippoli S. The need to know crude event rates in meta-analysis. Am Heart J. 2013 Sep;166(3):e17. doi: 10.1016/j.ahj.2013.06.016. Epub 2013 Jul 25. PubMed PMID: 24016516.

      12. OMA software (OMA, Open Meta-Analyst version 4.16.12, Tufts University, U.S., url http://tuftscaes.org/open_meta/)


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    1. On 2016 Mar 22, Joshua L Cherry commented:

      This excellent study provides much useful information, but some important points are not apparent from the article. An important claim of the article is that the unmutated common ancestor (UCA) antibody binds the founder ENV protein with high affinity. However, several amino acids in the important CDR3 of the heavy chain “UCA” cannot have been encoded by germline sequences. These include most of the RGQLVN sequence that comprises six of the twelve paratope residues in the heavy chain. Either the nucleotide positions in question represent mutated germline residues, or they represent random additions by TdT. In the first case, the “UCA” that bound antigen with high affinity actually included mutations, presumably the product of affinity maturation. In the second case, we cannot know the identities of the original, unmutated nucleotides, and it is reasonable to suspect that the true UCA had a different sequence and a lower affinity for ENV. In any case, the fact that so many important residues are not encoded by the germline might mean that antibodies of this type are rare in the naive repertoire and therefore difficult to elicit.

      The reconstructed UCA sequence contains 27 bases between the V and J regions. The longest perfect match to any germline D segment is just five bases. Five bases would be an unusually small size for a D region; less than 1% of the naive B cell repertoire contains a D region of five or fewer bases. Furthermore, a total of 22 N nucleotides, though not extraordinary, would be larger than typical. This suggests that some of the “UCA” bases in this region, including some of those encoding the critical RGQLVN sequence, are actually mutated D nucleotides, presumably selected for higher affinity to ENV.

      Suppose, though, that the 22 bases that do not match the germline indeed represent N nucleotides, randomly added by TdT (with perhaps a small contribution from P nucleotides). In that case, we cannot know with any certainty what these bases were in the unmutated ancestor. If these bases changed early in the affinity maturation, perhaps greatly increasing the more modest affinity of the actual unmutated ancestor, there would be no way to know this.

      The authors did construct three other candidate UCAs that differed at one or two amino acids. These, however, encompass only a small component of the uncertainty in the UCA sequence. Furthermore, results with these variants illustrate the concern raised here. Two of the variants bore an E at the third position of the critical hexapeptide, which is consistent with a longer D region. These more plausible UCA antibodies exhibited a 3.8- to 7-fold reduction in ENV affinity compared to the candidate containing RGQLVN.

      If the UCA sequence is correct, the fact that several of the most important residues are encoded by randomly added nucleotides may have implications for the ease of eliciting similar antibodies through vaccination. Sequences encoded by commonly used germline segments will be present at reasonable frequencies in the naive B cell repertoire. Sequences encoded by N nucleotides will be rarer. If they must be associated with unusually short D regions, the combination will be rarer still. To the extent that a vaccination strategy is aimed at eliciting antibodies of this type, this may be a problem.


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    1. On 2014 Apr 08, David Reardon commented:

      The authors of this study<sup>1</sup> concluded that smoking explains about one-third of the variation in preterm birth rates among low income and high income groups (SES) while reproductive history accounts for only one-fourth of preterm births.

      Unfortunately this analysis and conclusion is marred by the incorrect assumption that smoking behavior is independent of prior reproductive history. It is not.

      Smoking behavior is driven by many emotional factors, including loss and bereavement.<sup>2</sup> Women are especially more likely to explain a desire to smoke to cope with emotional upsets.<sup>3</sup>

      Most importantly to the study at hand, research has consistently shown that women with a history of abortion smoke substantially more.<sup>4,5</sup> In addition, a dose effect has also been observed, with the number of abortions correlating with even higher rates of smoking.<sup>6</sup>

      Research has also shown that women with a history of abortion are more likely to persist in or increase smoking (and alcohol or illegal drug use) during subsequent wanted pregnancies.<sup>7,8</sup> The most common explanation for this—provided by women themselves and by therapists experienced in treating post-abortion maladjustment<sup>9</sup> is that subsequent wanted pregnancies may stir up unresolved feelings of loss, grief, or guilt relative to past abortions. From this perspective, smoking, drinking, and the use of other mood altering substances are just forms self-medication employed to assist in the repression of unresolved negative emotions.

      A causal connection between abortion and smoking behavior is reported in a survey of 527 women interviewed one month after their abortions in which 23% reported using smoking specifically “to help deal with [their] abortion." Drinking and drug use were also reported as being used “to help deal with” their abortions by 18% and 9% respectively.10 Yet another follow up survey of women after their abortions found that higher post-abortion anxiety scores correlated to heavier smoking patterns.<sup>11</sup>

      It is also known that smoking rates increase with exposue to trauma and PTSD<sup>12.</sup> This is important because studies of abortion patients, using multiple scales and assessments before and subsequent to abortion, show a significantly higher rates of PTSD following abortion.<sup>13,14,15</sup>

      In light of this evidence, it is clear that history of abortion should not be treated as simply an aspect of a woman’s physical history. It has psychological components more profound than, for example, a history of placenta previa. These psychological reactions can contribute to behaviors such as elevated smoking, drinking, and drug use which may not only persist through subsequent wanted pregnancies<sup>16,</sup> but may even be accentuated by the emotions surrounding the pregnancy.<sup>9</sup>

      In light of the above observations, I would encourage the authors to undertake additional analyses to tease out any possible distinctions between the direct biological effect associated with abortion and the possible indirect effects which may be associated with the psychological effects of abortion on behaviors like smoking.

      Notably, the current study observe adjusted odds ratios for extremely preterm, very preterm, and moderately preterm for abortion (1.28, 1.16, 1.07, respectively) which were in a range similar to the adjusted odds ratios for smoking (1.21, 1.23, 1.15). Additional analyses could be performed to separate the potential effects of smoking and abortion.

      In my proposed analysis, the first uninterrupted pregnancy outcomes (full term live singleton birth, stillbirth, moderate preterm, very preterm, extremely preterm, miscarriage, ectopic pregnancy) would be compared for three groups of women (no smoking, quit smoking during first trimester, smoked beyond first trimester) with results segregated for a prior exposure to induced abortion.

      The proposed analysis would also allow us to determine if a history of abortion does reduce the likelihood that woman will stop smoking in the first trimester. In addition, comparing the two groups of women without any history of smoking would give us a clearer picture of the effects of abortion when smoking is not a confounding factor. This comparison would not eliminate other possible indirect, emotional factors (such as eating disorders, which can also be associated with abortion<sup>9,</sup> might still play a role, but it would at least demonstrate whether smoking behavior in combination with abortion is confounding these currently published results.

      References

      1) Raisanen S, Gissler M, Saari J, Kramer M, Heinonen S (2013) Contribution of Risk Factors to Extremely, Very and Moderately Preterm Births – Register- Based Analysis of 1,390,742 Singleton Births. PLoS ONE 8(4): e60660.

      2) Parkes CM, Brown RJ. Health after bereavement. A controlled study of young Boston widows and widowers. Psychosom Med. 1972 Sep-Oct;34(5):449-61.

      3) United States Public Health Service, Adult Use of Tobacco. U.S. Dept of Health, Education and Welfare, CDC, Bureau of Health Education (1975)

      4) Pedersen W. Childbirth, abortion and subsequent substance use in young women: a population-based longitudinal study. Addiction. 2007 Dec;102(12):1971-8.

      5) Henriet L, Kaminski M. Impact of induced abortions on subsequent pregnancy outcome: the 1995 French national perinatal pregnancy survey, Br J Obstet Gynaecol 108:1036-1042, 2001.

      6) Levin AA, Schoenbaum SC, Monson RR, Stubblefield PG, Ryan KJ. Association of induced abortion with subsequent pregnancy loss. JAMA. 1980 Jun 27;243(24):2495-9.

      7) Coleman P, Reardon D, Rue V, Cougle J. A history of induced abortion in relation to substance use during subsequent pregnancies carried to term. Am J Obst Gynecol 2002; 187: 1673–8.

      8) Coleman P, Reardon D, Cougle J. Substance use among pregnant women in the context of previous reproductive loss and desire for current pregnancy. Br J Health Psychol 2005; 10: 255–68.

      9) Burke T, Reardon DC. Forbidden Grief: The Unspoken Pain of Abortion. Acorn Books. (2002) Springfield, IL.

      10) Major B, Richards C, Cooper ML, Cozzarelli C, Zubek J. Personal resilience, cognitive appraisals, and coping: an integrative model of adjustment to abortion. J Pers Soc Psychol. 1998 Mar;74(3):735-52.

      11) Henshaw R, et al, "Psychological responses following medical abortion (using mifepristone and gemepost) and surgical aspiration. Acta Obstet Gynecol Scand 73:812, 1994.

      12) Feldner MT, Babson KA, Zvolensky MJ. Smoking, traumatic event exposure, and post-traumatic stress: a critical review of the empirical literature.. Clin Psychol Rev. 2007 Jan;27(1):14-45. Epub 2006 Oct 10.

      13) Sharain Suliman et. al., Comparison of pain, cortisol levels, and psychological distress in women undergoing surgical termination of pregnancy under local anaesthesia versus intravenous sedation. BMC Psychiatry 2007, 7:24.

      14) Rue VM, Coleman PK, Rue JJ, Reardon DC. Induced abortion and traumatic stress: A preliminary comparison of American and Russian women. Med Sci Monit, 2004 10(10): SR5-16.

      15) Rousset, C. Brulfert, N. Séjourné, N. Goutaudier & H. Chabrol. Posttraumatic Stress Disorder and psychological distress following medical and surgical abortion. C. Journal of Reproductive and Infant Psychology, (2011) Volume 29(5), 506-517.

      16) Coleman PK, Reardon DC, Cougle JR. Substance use among pregnant women in the context of previous reproductive loss and desire for current pregnancy.Br J Health Psychol. 2005 May;10(Pt 2):255-68.


      This comment, imported by Hypothesis from PubMed Commons, is licensed under CC BY.

    1. On 2013 Oct 31, John Cannell commented:

      The authors reported that immune system dysregulation is common in autism spectrum disorder (ASD”. Vitamin D deficiency produces very similar immune dysregulation.

      Prietl B, 2013

      Kamen DL, 2010

      Yang CY, 2013

      Baeke F, 2010

      Thus the vitamin D theory of ASD (vitamin D deficiency being the environmental risk factor for this highly heritable disorder) is consistent with the authors work. Three recent studies, using community controls, have found 25(OH)D levels are significantly lower in children with ASD. Two of the studies below (Mostafa et al and Gong et al) also found ASD severity, as rated on standard ASD rating scales, is inversely correlated with 25(OH)D levels. Mostafa et al found an R value of -.86 for the association of serum 25(OH)D with ASD severity.

      Gong ZL, Luo CM, Wang L, Shen L, Wei F, Tong RJ, Liu Y. Serum 25-hydroxyvitamin D levels in Chinese children with autism spectrum disorders. Neuroreport. 2013 Oct 1. Gong ZL, 2014

      Meguid NA, Hashish AF, Anwar M, Sidhom G. Reduced serum levels of 25-hydroxy and 1,25-dihydroxy vitamin D in Egyptian children with autism. J Altern Complement Med. 2010 Jun;16(6):641-5. Meguid NA, 2010

      Mostafa GA, Al-Ayadhi LY.Reduced serum concentrations of 25-hydroxy vitamin D in children with autism: relation to autoimmunity. J Neuroinflammation. 2012 Aug 17;9:201. Mostafa GA, 2012

      There is a plethora of basic science explaining why low gestational or early childhood 25(OH)D levels would adversely effect brain development.

      Eyles DW, Feron F, Cui X, Kesby JP, Harms LH, Ko P, McGrath JJ, Burne TH. Developmental vitamin D deficiency causes abnormal brain development. Psychoneuroendocrinology. 2009 Dec;34 Suppl 1:S247-57. doi: 10.1016/j.psyneuen.2009.04.015. Epub . Review. Eyles DW, 2009

      DeLuca GC, Kimball SM, Kolasinski J, Ramagopalan SV, Ebers GC. Review: the role of vitamin D in nervous system health and disease. Neuropathol Appl Neurobiol. 2013 Aug;39(5):458-84. doi: 10.1111/nan.12020. DeLuca GC, 2013

      Eyles DW, Burne TH, McGrath JJ. Vitamin D, effects on brain development, adult brain function and the links between low levels of vitamin D and neuropsychiatric disease. Front Neuroendocrinol. 2013 Jan;34(1):47-64. doi: 10.1016/j.yfrne.2012.07.001. Epub 2012 Jul 11. Review. Eyles DW, 2013

      Furthermore, the vitamin D theory of autism explains most of the epidemiological facts of ASD.

      Cannell JJ. On the aetiology of autism. Acta Paediatr. 2010 Aug;99(8):1128-30. Cannell JJ, 2010

      Cannell JJ. Autism and vitamin D. Med Hypotheses. 2008;70(4):750-9. Cannell JJ, 2008

      70% of American toddlers do not take the American Pediatric Association's recommended vitamin D supplement of 400 IU/day and few toddlers or pregnant women get any sunshine due to the sun scare. As vitamin D fortified milk consumption and sun exposure has declined, so have toddlers and pregnant women’s vitamin D levels. The dramatic increase in the incidence of ASD occurred during the same time vitamin D levels were falling in toddlers and pregnant women.

      Cannell JJ. Autism, will vitamin D treat core symptoms? Medical Hypotheses. 2013 Aug;81(2):195-8. Cannell JJ, 2013

      Some autism researchers seem cognizant of the entire body of autism research. For example, a group of well-known European ASD researchers, including Professor Christopher Gillberg of the Gillberg Neuropsychiatric Institute, have recently called for the need for “urgent research” into the vitamin D deficiency theory of ASD.

      Kočovská E, Fernell E, Billstedt E, Minnis H, Gillberg C. Vitamin D and autism: clinical review. Res Dev Disabil. 2012 Sep-Oct;33(5):1541-50. doi: 10.1016/j.ridd.2012.02.015. Epub 2012 Apr 21.Kočovská E, 2012

      Until all autism researchers become cognizant of the wider body of scientific research, we will continue to wonder how to prevent - and perhaps even treat - this modern day plague.

      John J Cannell, MD

      Vitamin D Council

      http://www.vitamindcouncil.org


      This comment, imported by Hypothesis from PubMed Commons, is licensed under CC BY.

    1. On 2013 Oct 31, John Cannell commented:

      The authors stated that markers of oxidative stress are present in autism spectrum disorder (ASD). I wonder if the authors are aware that the genes for the antioxidants superoxide dismutase and thioredoxin reductase are directly up-regulated by the secosteroid 1,25 di-hydroxy vitamin D3 (calcitriol). I believe both genes also harbor a vitamin D response element.

      Peehl DM, Shinghal R, Nonn L, Seto E, Krishnan AV, Brooks JD, Feldman D. Molecular activity of 1,25‐dihydroxyvitamin D3 in primary cultures of human prostatic epithelial cells revealed by cDNA microarray analysis. J. Steroid Biochem Mol. Biol 2004;92:131–141. PMID:15555907>

      Calcitriol also directly up-regulates glutathione reductase and increases glutathione levels.

      Jain SK, et alo. Vitamin D upregulates glutamate cysteine ligase and glutathione reductase, and GSH formation, and decreases ROS and MCP-1 and IL-8 secretion in high-glucose exposed U937 monocytes. Biochem Biophys Res Commun. 2013 Jul 19;437(1):7-11. doi: 10.1016/j.bbrc.2013.06.004. Jain SK, 2013

      Also, supplemental vitamin D significantly reduces oxidative stress in humans.

      Nikooyeh B, et al. Daily intake of vitamin D- or calcium-vitamin D-fortified Persian yogurt drink (doogh) attenuates diabetes-induced oxidative stress: evidence for antioxidative properties of vitamin D.J Hum Nutr Diet. 2013 Jul 5. doi: 10.1111/jhn.12142. Nikooyeh B, 2014

      Asemi Z, et al. Vitamin D supplementation affects serum high-sensitivity C-reactive protein, insulin resistance, and biomarkers of oxidative stress in pregnant women. J Nutr. 2013 Sep;143(9):1432-8. doi: 10.3945/jn.113.177550. Asemi Z, 2013

      Thus the vitamin D theory of ASD (vitamin D deficiency being the environmental risk factor for this highly heritable disorder) is consistent with the authors work. Three recent studies, using community controls, have found 25(OH)D levels are significantly lower in children with ASD. Two of the studies below (Mostafa et al and Gong et al) also found ASD severity, as rated on standard ASD rating scales, is inversely correlated with 25(OH)D levels. Mostafa et al found an R value of -.86 for the association of serum 25(OH)D with ASD severity.

      Gong ZL, Luo CM, Wang L, Shen L, Wei F, Tong RJ, Liu Y. Serum 25-hydroxyvitamin D levels in Chinese children with autism spectrum disorders. Neuroreport. 2013 Oct 1. Gong ZL, 2014

      Meguid NA, Hashish AF, Anwar M, Sidhom G. Reduced serum levels of 25-hydroxy and 1,25-dihydroxy vitamin D in Egyptian children with autism. J Altern Complement Med. 2010 Jun;16(6):641-5. Meguid NA, 2010

      Mostafa GA, Al-Ayadhi LY.Reduced serum concentrations of 25-hydroxy vitamin D in children with autism: relation to autoimmunity. J Neuroinflammation. 2012 Aug 17;9:201. Mostafa GA, 2012

      There is a plethora of basic science explaining why low gestational or early childhood 25(OH)D levels would adversely effect brain development.

      Eyles DW, Feron F, Cui X, Kesby JP, Harms LH, Ko P, McGrath JJ, Burne TH. Developmental vitamin D deficiency causes abnormal brain development. Psychoneuroendocrinology. 2009 Dec;34 Suppl 1:S247-57. doi: 10.1016/j.psyneuen.2009.04.015. Epub . Review. Eyles DW, 2009

      DeLuca GC, Kimball SM, Kolasinski J, Ramagopalan SV, Ebers GC. Review: the role of vitamin D in nervous system health and disease. Neuropathol Appl Neurobiol. 2013 Aug;39(5):458-84. doi: 10.1111/nan.12020. DeLuca GC, 2013

      Eyles DW, Burne TH, McGrath JJ. Vitamin D, effects on brain development, adult brain function and the links between low levels of vitamin D and neuropsychiatric disease. Front Neuroendocrinol. 2013 Jan;34(1):47-64. doi: 10.1016/j.yfrne.2012.07.001. Epub 2012 Jul 11. Review. Eyles DW, 2013

      Furthermore, the vitamin D theory of autism explains most of the epidemiological facts of ASD.

      Cannell JJ. On the aetiology of autism. Acta Paediatr. 2010 Aug;99(8):1128-30. Cannell JJ, 2010

      Cannell JJ. Autism and vitamin D. Med Hypotheses. 2008;70(4):750-9. Cannell JJ, 2008

      70% of American toddlers do not take


      This comment, imported by Hypothesis from PubMed Commons, is licensed under CC BY.

    1. On 2015 Apr 27, Chloe Wong commented:

      Thank you for your interest and comments on our manuscript. As we hope is clear from the Discussion section of our paper, we are very conservative in our conclusions and are the first to recognize the many limitations of doing this type of work. Please also see our articles highlighting the many important issues to consider when undertaking and interpreting epigenetic epidemiological analyses (Mill & Heijmans, 2013; Heijmans & Mill, 2012).

      There are many reasons why the standard research approaches developed for genetic epidemiology are not necessarily appropriate for epigenetic studies of common disease. To date, no real precedents have been set about the optimal sample-sizes needed to detect epigenetic changes associated with disease. The number of ASD-discordant twin-pairs available for this study was small - these are extremely rare samples, and we were only able to recruit and characterize six discordant monozygotic (MZ) pairs. Furthermore, it is recognized that standard multiple testing parameters (as used in GWAS analyses) are not necessarily appropriate for genome-wide DNA methylation data ­ first, most of the sites on the commonly-used Illumina EWAS array are actually non-variable, and second there is considerable non-independence between DNA methylation at proximal CpG sites. With the aim of identifying real, biologically relevant within-twin and between-group DNA methylation differences, we therefore decided to use an analytic approach that incorporated both the significance (that is, t-test statistic) and magnitude (that is, absolute DNA methylation difference) of any observed differences to produce a ranked list of DMRs. Of note, we confirmed the variation at selected loci using an independent technology (bisulfite-pyrosequencing) to rule out technical artifacts in the data.

      Because individual studies such as this are, by necessity, small, it is absolutely clear that findings should be treated with caution until they are replicated and/or validated using complimentary approaches. In this regard, it is noteworthy that one of the top-ranked differentially methylated regions identified in our twin study ­ located in the vicinity of the OR2L13 gene - is also a top-ranked differentially methylated locus in a more recent epigenetic study of ASD by Berko and colleagues (2014). Furthermore, OR2L13 was found to be significantly differentially expressed in post-mortem brain tissue from ASD cases compared to unaffected controls in the most systematic transcriptomic analysis of autism brain yet undertaken (Voineagu et al, 2011). Finally, this gene has also been implicated in autism by genetic studies that have identified recurrent CNVs spanning the locus in cases.

      The main concern raised by Professor Bishop is that methylomic differences are also identified within concordant affected and concordant unaffected twins. We would argue this is not necessarily surprising; given that it is not feasible to directly study brain tissue from our twins, and ASD is a subtle developmental brain problem, it's plausible (perhaps likely) that these individuals are discordant for other traits/exposures that are also associated with epigenetic variation detected in blood. That doesn¹t mean that differences specific to ASD discordant twin-pairs are not interesting. What is clear from our analyses is that i) the sites identified as differentially methylated in the six ASD-discordant twin-pairs are not differentially methylated in concordant-unaffected twin-pairs, and ii) the overall distribution of average within-pair DNA methylation differences is significantly skewed in ASD-discordant twins, with a higher number of CpG sites demonstrating a larger average difference in DNA methylation.

      We acknowledge that our data represent only the first step in identifying molecular variation associated with autism. For example, we cannot begin to tackle issues regarding causality in this study, and it is possible (perhaps likely) that many of the changes we identified represent consequences of the disease. As discussed, we were also limited to using DNA derived from blood, and moving forward it will be important to understand the utility of peripheral tissues as a proxy for inaccessible organs such as the brain. We are currently undertaking more systematic analyses in larger samples of twins and post-mortem brain to address many of the limitations of this study.

      Berko ER, Suzuki M, Beren F, Lemetre C, Alaimo CM, Calder RB, Ballaban-Gil K, Gounder B, Kampf K, Kirschen J, Maqbool SB, Momin Z, Reynolds DM, Russo N, Shulman L, Stasiek E, Tozour J, Valicenti-McDermott M, Wang S, Abrahams BS, Hargitai J, Inbar D, Zhang Z, Buxbaum JD, Molholm S, Foxe JJ, Marion RW, Auton A, Greally JM. Mosaic epigenetic dysregulation of ectodermal cells in autism spectrum disorder. PLoS Genet. 2014 May 29;10(5):e1004402.

      Heijmans BT, Mill J. Commentary: The seven plagues of epigenetic epidemiology. Int J Epidemiol. 2012 Feb;41(1):74-8.

      Mill J, Heijmans BT. From promises to practical strategies in epigenetic epidemiology. Nat Rev Genet. 2013 Aug;14(8):585-94.

      Voineagu I, Wang X, Johnston P, Lowe JK, Tian Y, et al. (2011) Transcriptomic analysis of autistic brain reveals convergent molecular pathology. Nature 474: 380­384.


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    1. On 2013 Oct 31, John Cannell commented:

      The authors reported that immune system dysregulation is common in autism spectrum disorder (ASD”. Vitamin D deficiency produces very similar immune dysregulation.

      Prietl B, 2013

      Kamen DL, 2010

      Yang CY, 2013

      Baeke F, 2010

      Thus the vitamin D theory of ASD (vitamin D deficiency being the environmental risk factor for this highly heritable disorder) is consistent with the authors work. Three recent studies, using community controls, have found 25(OH)D levels are significantly lower in children with ASD. Two of the studies below (Mostafa et al and Gong et al) also found ASD severity, as rated on standard ASD rating scales, is inversely correlated with 25(OH)D levels. Mostafa et al found an R value of -.86 for the association of serum 25(OH)D with ASD severity.

      Gong ZL, Luo CM, Wang L, Shen L, Wei F, Tong RJ, Liu Y. Serum 25-hydroxyvitamin D levels in Chinese children with autism spectrum disorders. Neuroreport. 2013 Oct 1. Gong ZL, 2014

      Meguid NA, Hashish AF, Anwar M, Sidhom G. Reduced serum levels of 25-hydroxy and 1,25-dihydroxy vitamin D in Egyptian children with autism. J Altern Complement Med. 2010 Jun;16(6):641-5. Meguid NA, 2010

      Mostafa GA, Al-Ayadhi LY.Reduced serum concentrations of 25-hydroxy vitamin D in children with autism: relation to autoimmunity. J Neuroinflammation. 2012 Aug 17;9:201. Mostafa GA, 2012

      There is a plethora of basic science explaining why low gestational or early childhood 25(OH)D levels would adversely effect brain development.

      Eyles DW, Feron F, Cui X, Kesby JP, Harms LH, Ko P, McGrath JJ, Burne TH. Developmental vitamin D deficiency causes abnormal brain development. Psychoneuroendocrinology. 2009 Dec;34 Suppl 1:S247-57. doi: 10.1016/j.psyneuen.2009.04.015. Epub . Review. Eyles DW, 2009

      DeLuca GC, Kimball SM, Kolasinski J, Ramagopalan SV, Ebers GC. Review: the role of vitamin D in nervous system health and disease. Neuropathol Appl Neurobiol. 2013 Aug;39(5):458-84. doi: 10.1111/nan.12020. DeLuca GC, 2013

      Eyles DW, Burne TH, McGrath JJ. Vitamin D, effects on brain development, adult brain function and the links between low levels of vitamin D and neuropsychiatric disease. Front Neuroendocrinol. 2013 Jan;34(1):47-64. doi: 10.1016/j.yfrne.2012.07.001. Epub 2012 Jul 11. Review. Eyles DW, 2013

      Furthermore, the vitamin D theory of autism explains most of the epidemiological facts of ASD.

      Cannell JJ. On the aetiology of autism. Acta Paediatr. 2010 Aug;99(8):1128-30. Cannell JJ, 2010

      Cannell JJ. Autism and vitamin D. Med Hypotheses. 2008;70(4):750-9. Cannell JJ, 2008

      70% of American toddlers do not take the American Pediatric Association's recommended vitamin D supplement of 400 IU/day and few toddlers or pregnant women get any sunshine due to the sun scare. As vitamin D fortified milk consumption and sun exposure has declined, so have toddlers and pregnant women’s vitamin D levels. The dramatic increase in the incidence of ASD occurred during the same time vitamin D levels were falling in toddlers and pregnant women.

      Cannell JJ. Autism, will vitamin D treat core symptoms? Medical Hypotheses. 2013 Aug;81(2):195-8. Cannell JJ, 2013

      Some autism researchers seem cognizant of the entire body of autism research. For example, a group of well-known European ASD researchers, including Professor Christopher Gillberg of the Gillberg Neuropsychiatric Institute, have recently called for the need for “urgent research” into the vitamin D deficiency theory of ASD.

      Kočovská E, Fernell E, Billstedt E, Minnis H, Gillberg C. Vitamin D and autism: clinical review. Res Dev Disabil. 2012 Sep-Oct;33(5):1541-50. doi: 10.1016/j.ridd.2012.02.015. Epub 2012 Apr 21.Kočovská E, 2012

      Until all autism researchers become cognizant of the wider body of scientific research, we will continue to wonder how to prevent - and perhaps even treat - this modern day plague.

      John J Cannell, MD

      Vitamin D Council

      http://www.vitamindcouncil.org


      This comment, imported by Hypothesis from PubMed Commons, is licensed under CC BY.

    1. On 2013 Oct 31, John Cannell commented:

      The authors concluded markers of oxidative stress is present in autism spectrum disorder (ASD). I wonder if the authors are aware that the genes for the antioxidants superoxide dismutase and thioredoxin reductase are directly up-regulated by the secosteroid 1,25 di-hydroxy vitamin D3 (calcitriol). I believe both genes also harbor a vitamin D response element.

      Peehl DM, Shinghal R, Nonn L, Seto E, Krishnan AV, Brooks JD, Feldman D. Molecular activity of 1,25‐dihydroxyvitamin D3 in primary cultures of human prostatic epithelial cells revealed by cDNA microarray analysis. J. Steroid Biochem Mol. Biol 2004;92:131–141. PMID:15555907>

      Calcitriol also directly up-regulates glutathione reductase and increases glutathione levels.

      Jain SK, et alo. Vitamin D upregulates glutamate cysteine ligase and glutathione reductase, and GSH formation, and decreases ROS and MCP-1 and IL-8 secretion in high-glucose exposed U937 monocytes. Biochem Biophys Res Commun. 2013 Jul 19;437(1):7-11. doi: 10.1016/j.bbrc.2013.06.004. Jain SK, 2013

      Also, supplemental vitamin D significantly reduces oxidative stress in humans.

      Nikooyeh B, et al. Daily intake of vitamin D- or calcium-vitamin D-fortified Persian yogurt drink (doogh) attenuates diabetes-induced oxidative stress: evidence for antioxidative properties of vitamin D.J Hum Nutr Diet. 2013 Jul 5. doi: 10.1111/jhn.12142. Nikooyeh B, 2014

      Asemi Z, et al. Vitamin D supplementation affects serum high-sensitivity C-reactive protein, insulin resistance, and biomarkers of oxidative stress in pregnant women. J Nutr. 2013 Sep;143(9):1432-8. doi: 10.3945/jn.113.177550. Asemi Z, 2013

      Thus the vitamin D theory of ASD (vitamin D deficiency being the environmental risk factor for this highly heritable disorder) is consistent with the authors work. Three recent studies, using community controls, have found 25(OH)D levels are significantly lower in children with ASD. Two of the studies below (Mostafa et al and Gong et al) also found ASD severity, as rated on standard ASD rating scales, is inversely correlated with 25(OH)D levels. Mostafa et al found an R value of -.86 for the association of serum 25(OH)D with ASD severity.

      Gong ZL, Luo CM, Wang L, Shen L, Wei F, Tong RJ, Liu Y. Serum 25-hydroxyvitamin D levels in Chinese children with autism spectrum disorders. Neuroreport. 2013 Oct 1. Gong ZL, 2014

      Meguid NA, Hashish AF, Anwar M, Sidhom G. Reduced serum levels of 25-hydroxy and 1,25-dihydroxy vitamin D in Egyptian children with autism. J Altern Complement Med. 2010 Jun;16(6):641-5. Meguid NA, 2010

      Mostafa GA, Al-Ayadhi LY.Reduced serum concentrations of 25-hydroxy vitamin D in children with autism: relation to autoimmunity. J Neuroinflammation. 2012 Aug 17;9:201. Mostafa GA, 2012

      There is a plethora of basic science explaining why low gestational or early childhood 25(OH)D levels would adversely effect brain development.

      Eyles DW, Feron F, Cui X, Kesby JP, Harms LH, Ko P, McGrath JJ, Burne TH. Developmental vitamin D deficiency causes abnormal brain development. Psychoneuroendocrinology. 2009 Dec;34 Suppl 1:S247-57. doi: 10.1016/j.psyneuen.2009.04.015. Epub . Review. Eyles DW, 2009

      DeLuca GC, Kimball SM, Kolasinski J, Ramagopalan SV, Ebers GC. Review: the role of vitamin D in nervous system health and disease. Neuropathol Appl Neurobiol. 2013 Aug;39(5):458-84. doi: 10.1111/nan.12020. DeLuca GC, 2013

      Eyles DW, Burne TH, McGrath JJ. Vitamin D, effects on brain development, adult brain function and the links between low levels of vitamin D and neuropsychiatric disease. Front Neuroendocrinol. 2013 Jan;34(1):47-64. doi: 10.1016/j.yfrne.2012.07.001. Epub 2012 Jul 11. Review. Eyles DW, 2013

      Furthermore, the vitamin D theory of autism explains most of the epidemiological facts of ASD.

      Cannell JJ. On the aetiology of autism. Acta Paediatr. 2010 Aug;99(8):1128-30. Cannell JJ, 2010

      Cannell JJ. Autism and vitamin D. Med Hypotheses. 2008;70(4):750-9. Cannell JJ, 2008

      70% of American toddlers do not take th


      This comment, imported by Hypothesis from PubMed Commons, is licensed under CC BY.

    1. On 2013 Oct 31, John Cannell commented:

      The authors found markers oxidative stress is present in autism spectrum disorder (ASD). I wonder if the authors are aware that the genes for the antioxidants superoxide dismutase and thioredoxin reductase are directly up-regulated by the secosteroid 1,25 di-hydroxy vitamin D3 (calcitriol). I believe both genes also harbor a vitamin D response element.

      Peehl DM, Shinghal R, Nonn L, Seto E, Krishnan AV, Brooks JD, Feldman D. Molecular activity of 1,25‐dihydroxyvitamin D3 in primary cultures of human prostatic epithelial cells revealed by cDNA microarray analysis. J. Steroid Biochem Mol. Biol 2004;92:131–141. PMID:15555907>

      Calcitriol also directly up-regulates glutathione reductase and increases glutathione levels.

      Jain SK, et alo. Vitamin D upregulates glutamate cysteine ligase and glutathione reductase, and GSH formation, and decreases ROS and MCP-1 and IL-8 secretion in high-glucose exposed U937 monocytes. Biochem Biophys Res Commun. 2013 Jul 19;437(1):7-11. doi: 10.1016/j.bbrc.2013.06.004. Jain SK, 2013

      Also, supplemental vitamin D significantly reduces oxidative stress in humans.

      Nikooyeh B, et al. Daily intake of vitamin D- or calcium-vitamin D-fortified Persian yogurt drink (doogh) attenuates diabetes-induced oxidative stress: evidence for antioxidative properties of vitamin D.J Hum Nutr Diet. 2013 Jul 5. doi: 10.1111/jhn.12142. Nikooyeh B, 2014

      Asemi Z, et al. Vitamin D supplementation affects serum high-sensitivity C-reactive protein, insulin resistance, and biomarkers of oxidative stress in pregnant women. J Nutr. 2013 Sep;143(9):1432-8. doi: 10.3945/jn.113.177550. Asemi Z, 2013

      Thus the vitamin D theory of ASD (vitamin D deficiency being the environmental risk factor for this highly heritable disorder) is consistent with the authors work. Three recent studies, using community controls, have found 25(OH)D levels are significantly lower in children with ASD. Two of the studies below (Mostafa et al and Gong et al) also found ASD severity, as rated on standard ASD rating scales, is inversely correlated with 25(OH)D levels. Mostafa et al found an R value of -.86 for the association of serum 25(OH)D with ASD severity.

      Gong ZL, Luo CM, Wang L, Shen L, Wei F, Tong RJ, Liu Y. Serum 25-hydroxyvitamin D levels in Chinese children with autism spectrum disorders. Neuroreport. 2013 Oct 1. Gong ZL, 2014

      Meguid NA, Hashish AF, Anwar M, Sidhom G. Reduced serum levels of 25-hydroxy and 1,25-dihydroxy vitamin D in Egyptian children with autism. J Altern Complement Med. 2010 Jun;16(6):641-5. Meguid NA, 2010

      Mostafa GA, Al-Ayadhi LY.Reduced serum concentrations of 25-hydroxy vitamin D in children with autism: relation to autoimmunity. J Neuroinflammation. 2012 Aug 17;9:201. Mostafa GA, 2012

      There is a plethora of basic science explaining why low gestational or early childhood 25(OH)D levels would adversely effect brain development.

      Eyles DW, Feron F, Cui X, Kesby JP, Harms LH, Ko P, McGrath JJ, Burne TH. Developmental vitamin D deficiency causes abnormal brain development. Psychoneuroendocrinology. 2009 Dec;34 Suppl 1:S247-57. doi: 10.1016/j.psyneuen.2009.04.015. Epub . Review. Eyles DW, 2009

      DeLuca GC, Kimball SM, Kolasinski J, Ramagopalan SV, Ebers GC. Review: the role of vitamin D in nervous system health and disease. Neuropathol Appl Neurobiol. 2013 Aug;39(5):458-84. doi: 10.1111/nan.12020. DeLuca GC, 2013

      Eyles DW, Burne TH, McGrath JJ. Vitamin D, effects on brain development, adult brain function and the links between low levels of vitamin D and neuropsychiatric disease. Front Neuroendocrinol. 2013 Jan;34(1):47-64. doi: 10.1016/j.yfrne.2012.07.001. Epub 2012 Jul 11. Review. Eyles DW, 2013

      Furthermore, the vitamin D theory of autism explains most of the epidemiological facts of ASD.

      Cannell JJ. On the aetiology of autism. Acta Paediatr. 2010 Aug;99(8):1128-30. Cannell JJ, 2010

      Cannell JJ. Autism and vitamin D. Med Hypotheses. 2008;70(4):750-9. Cannell JJ, 2008

      70% of American toddlers do not take the Ameri


      This comment, imported by Hypothesis from PubMed Commons, is licensed under CC BY.

    1. On 2014 Mar 25, Pat Arndt commented:

      There is another case of HDFN due to anti-Js<sup>b</sup> that can be added to Table 2; it was the first reported case of fatal hydrops due to anti-Js<sup>b.</sup> The case was presented as an abstract at an AABB meeting in 1987. Additional information not in the abstract has been included below. Publication: Ratcliff D, Fiorenza S, Culotta E, Arndt P, Garratty G. Hydrops fetalis (HF) and a maternal hemolytic transfusion reaction associated with anti-Js<sup>b.</sup> Transfusion 1987;27:534 Maternal age and ethnicity: 22 years old, G4P2 (corrected from abstract), Black Sensitization event: Unknown (pregnancy?) Prior history: Third child was stillborn. Time of presentation: 26 weeks Titer: 64 Management: Neonatal transfusion Source of blood during pregnancy: N/A Fetal outcome: Hydropic fetus delivered at 30 weeks gestation by C-section with birth Hb of 56 g/L. Infant died at about 9 hours of life. Neonatal transfusion requirements: 100 mL Js(b+) RBCs transfused about 5 hours after birth


      This comment, imported by Hypothesis from PubMed Commons, is licensed under CC BY.

    1. On 2013 Oct 31, John Cannell commented:

      The authors found markers oxidative stress is present in autism spectrum disorder (ASD). I wonder if the authors are aware that the genes for the antioxidants superoxide dismutase and thioredoxin reductase are directly up-regulated by the secosteroid 1,25 di-hydroxy vitamin D3 (calcitriol). I believe both genes also harbor a vitamin D response element.

      Peehl DM, Shinghal R, Nonn L, Seto E, Krishnan AV, Brooks JD, Feldman D. Molecular activity of 1,25‐dihydroxyvitamin D3 in primary cultures of human prostatic epithelial cells revealed by cDNA microarray analysis. J. Steroid Biochem Mol. Biol 2004;92:131–141. PMID:15555907>

      Calcitriol also directly up-regulates glutathione reductase and increases glutathione levels.

      Jain SK, et alo. Vitamin D upregulates glutamate cysteine ligase and glutathione reductase, and GSH formation, and decreases ROS and MCP-1 and IL-8 secretion in high-glucose exposed U937 monocytes. Biochem Biophys Res Commun. 2013 Jul 19;437(1):7-11. doi: 10.1016/j.bbrc.2013.06.004. Jain SK, 2013

      Also, supplemental vitamin D significantly reduces oxidative stress in humans.

      Nikooyeh B, et al. Daily intake of vitamin D- or calcium-vitamin D-fortified Persian yogurt drink (doogh) attenuates diabetes-induced oxidative stress: evidence for antioxidative properties of vitamin D.J Hum Nutr Diet. 2013 Jul 5. doi: 10.1111/jhn.12142. Nikooyeh B, 2014

      Asemi Z, et al. Vitamin D supplementation affects serum high-sensitivity C-reactive protein, insulin resistance, and biomarkers of oxidative stress in pregnant women. J Nutr. 2013 Sep;143(9):1432-8. doi: 10.3945/jn.113.177550. Asemi Z, 2013

      Thus the vitamin D theory of ASD (vitamin D deficiency being the environmental risk factor for this highly heritable disorder) is consistent with the authors work. Three recent studies, using community controls, have found 25(OH)D levels are significantly lower in children with ASD. Two of the studies below (Mostafa et al and Gong et al) also found ASD severity, as rated on standard ASD rating scales, is inversely correlated with 25(OH)D levels. Mostafa et al found an R value of -.86 for the association of serum 25(OH)D with ASD severity.

      Gong ZL, Luo CM, Wang L, Shen L, Wei F, Tong RJ, Liu Y. Serum 25-hydroxyvitamin D levels in Chinese children with autism spectrum disorders. Neuroreport. 2013 Oct 1. Gong ZL, 2014

      Meguid NA, Hashish AF, Anwar M, Sidhom G. Reduced serum levels of 25-hydroxy and 1,25-dihydroxy vitamin D in Egyptian children with autism. J Altern Complement Med. 2010 Jun;16(6):641-5. Meguid NA, 2010

      Mostafa GA, Al-Ayadhi LY.Reduced serum concentrations of 25-hydroxy vitamin D in children with autism: relation to autoimmunity. J Neuroinflammation. 2012 Aug 17;9:201. Mostafa GA, 2012

      There is a plethora of basic science explaining why low gestational or early childhood 25(OH)D levels would adversely effect brain development.

      Eyles DW, Feron F, Cui X, Kesby JP, Harms LH, Ko P, McGrath JJ, Burne TH. Developmental vitamin D deficiency causes abnormal brain development. Psychoneuroendocrinology. 2009 Dec;34 Suppl 1:S247-57. doi: 10.1016/j.psyneuen.2009.04.015. Epub . Review. Eyles DW, 2009

      DeLuca GC, Kimball SM, Kolasinski J, Ramagopalan SV, Ebers GC. Review: the role of vitamin D in nervous system health and disease. Neuropathol Appl Neurobiol. 2013 Aug;39(5):458-84. doi: 10.1111/nan.12020. DeLuca GC, 2013

      Eyles DW, Burne TH, McGrath JJ. Vitamin D, effects on brain development, adult brain function and the links between low levels of vitamin D and neuropsychiatric disease. Front Neuroendocrinol. 2013 Jan;34(1):47-64. doi: 10.1016/j.yfrne.2012.07.001. Epub 2012 Jul 11. Review. Eyles DW, 2013

      Furthermore, the vitamin D theory of autism explains most of the epidemiological facts of ASD.

      Cannell JJ. On the aetiology of autism. Acta Paediatr. 2010 Aug;99(8):1128-30. Cannell JJ, 2010

      Cannell JJ. Autism and vitamin D. Med Hypotheses. 2008;70(4):750-9. Cannell JJ, 2008

      70% of American toddlers do not take the Ameri


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    1. On 2013 Oct 31, John Cannell commented:

      I congratulate the authors on a fine review. I wonder if they are aware that vitamin D deficiency has been implicated in virtually all the immune abnormalities they review.

      Prietl B, 2013

      Kamen DL, 2010

      Yang CY, 2013

      Baeke F, 2010

      It goes to show how little communication is occurring among scientists in different fields. Each scientist seems to be immersed in his or her own research interest but seemingly oblivious to the larger body of research.

      Thus the vitamin D theory of ASD (vitamin D deficiency being the environmental risk factor for this highly heritable disorder) is consistent with the authors work. Three recent studies, using community controls, have found 25(OH)D levels are significantly lower in children with ASD. Two of the studies below (Mostafa et al and Gong et al) also found ASD severity, as rated on standard ASD rating scales, is inversely correlated with 25(OH)D levels. Mostafa et al found an R value of -.86 for the association of serum 25(OH)D with ASD severity. Mostafa et al were the first to find that 25(OH)D levels were inversely related to a autoantibody with an R value of -.86.

      Gong ZL, Luo CM, Wang L, Shen L, Wei F, Tong RJ, Liu Y. Serum 25-hydroxyvitamin D levels in Chinese children with autism spectrum disorders. Neuroreport. 2013 Oct 1. Gong ZL, 2014

      Meguid NA, Hashish AF, Anwar M, Sidhom G. Reduced serum levels of 25-hydroxy and 1,25-dihydroxy vitamin D in Egyptian children with autism. J Altern Complement Med. 2010 Jun;16(6):641-5. Meguid NA, 2010

      Mostafa GA, Al-Ayadhi LY.Reduced serum concentrations of 25-hydroxy vitamin D in children with autism: relation to autoimmunity. J Neuroinflammation. 2012 Aug 17;9:201. Mostafa GA, 2012

      There is a plethora of basic science explaining why low gestational or early childhood 25(OH)D levels would adversely effect brain development.

      DeLuca GC, Kimball SM, Kolasinski J, Ramagopalan SV, Ebers GC. Review: the role of vitamin D in nervous system health and disease. Neuropathol Appl Neurobiol. 2013 Aug;39(5):458-84. doi: 10.1111/nan.12020. DeLuca GC, 2013

      Eyles DW, Feron F, Cui X, Kesby JP, Harms LH, Ko P, McGrath JJ, Burne TH. Developmental vitamin D deficiency causes abnormal brain development. Psychoneuroendocrinology. 2009 Dec;34 Suppl 1:S247-57. doi: 10.1016/j.psyneuen.2009.04.015. Epub . Review. Eyles DW, 2009

      Furthermore, the vitamin D theory of autism explains most of the epidemiological facts of ASD.

      Cannell JJ. On the aetiology of autism. Acta Paediatr. 2010 Aug;99(8):1128-30. Cannell JJ, 2010

      Cannell JJ. Autism and vitamin D. Med Hypotheses. 2008;70(4):750-9. Cannell JJ, 2008

      70% of American toddlers do not take the American Pediatric Association's recommended vitamin D supplement of 400 IU/day. As milk consumption has fallen, so have toddler’s vitamin D levels.

      Cannell JJ. Autism, will vitamin D treat core symptoms? Medical Hypotheses. 2013 Aug;81(2):195-8. Cannell JJ, 2013

      Some autism researchers seem cognizant of the entire body of autism research. For example, a group of well-known European autism researchers, including Professor Christopher Gillberg of the Gillberg Neuropsychiatric Institute, have recently called for the need for “urgent research” into the vitamin D deficiency theory of ASD.

      Kočovská E, Fernell E, Billstedt E, Minnis H, Gillberg C. Vitamin D and autism: clinical review. Res Dev Disabil. 2012 Sep-Oct;33(5):1541-50. doi: 10.1016/j.ridd.2012.02.015. Epub 2012 Apr 21.Kočovská E, 2012

      However, these scientists appear to be in the minority. Until all autism researchers become cognizant of the wider body of scientific research, we will continue to wonder how to prevent - and perhaps even treat - this modern day plague.

      John J Cannell, MD

      Vitamin D Council

      http://www.vitamindcouncil.org


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    1. On 2013 Nov 09, Claudiu Bandea commented:

      What is a virus?

      With 1 µm in length and 0.5 µm in diameter, and a genome coding for more than 2500 putative proteins, the intriguing parasites isolated in Acanthamoeba cultures by Philippe et al. (1) dwarf numerous cellular microorganisms, including many eukaryotic microbes. To confirm microscopic observations that these parasitic organisms, labeled Pandoraviruses, are indeed viruses, Philippe et al., used negative defining criteria based on absence of components for three “basic cellular functions”: (i) production of adenosine 5’-triphosphate, (ii) binary fission, and (iii) translational machinery.

      However, many cellular microorganisms lack the components for production of adenosine 5’-triphosphate (2, 3), and some, such as yeast (4), produce multiple internal spores by de novo assembly of cellular membranes, rather than by binary fission. Moreover, some cellular microorganisms (2) don’t encode a full set of translational components, and many viruses produce translational components (e. g. tRNAs, amino acid-tRNA ligases, eIF4E translation initiation factor). Therefore, the negative criteria used by Philippe et al. for defining viruses, which were also emphasized in the accompanying article (5) and in ‘About the Cover’ (Science, 19 July 2013), do not differentiate between viruses and cellular microorganisms.

      Are Pandoraviruses viruses? Addressing this question might require a fundamental re-evaluation of the conventional view about the nature of viruses (6-9), not only in light of the vast amounts of data and knowledge about their composition, life cycle and evolution, but also in context of the expanding data and knowledge about the diversity of cellular microorganisms (2,3). One of the fundamental features that differentiate viruses from parasitic or symbiotic cellular organisms is that, during their intracellular development, viruses have their genome and other specific components more or less ‘free’ or dispersed within the host cell, whereas intracellular bacterial, archaeal and eukaryotic microorganisms maintain a cellular membrane and cellular organization throughout their life cycle.

      This view on the fundamental nature of viruses is consistent with a radical evolutionary model proposing that viral lineages originated from parasitic cellular species that started their intracellular development by fusing with their host cell (6, 8). By discarding their cellular membrane within their particular environment, the host cell, these novel parasites increased their access to host’s resources, including the translation machinery. Nevertheless, after synthesizing their specific molecules and replicating their genome using the resources found in their intracellular environment, the parasites produced spore-like transmissible forms, which started a new life cycle by fusing with other host cells.

      Although the life cycle of many extant viruses, including Poxviruses and Mimivirus, fully support the fusion model on the origin of viral lineages (8), Pandoraviruses represent overwhelming evidence. There is also strong evidence, including the absence of ribosomes, that some previously isolated parasitic microorganisms, such as KC5/2 (10) and KLaHel endocytobionts (11), are complex viral organisms. However, as previously discussed (8), there are many other complex parasitic species that are genuine viral organisms although they still produce ribosomes or ribosomal remnants.

      The absence of a cellular membrane within the host cell has presented the viral lineages with unique evolutionary opportunities, not readily available for their relatives that maintained a cellular membrane during their intracellular development. However, similar to all intracellular parasitic or symbiotic cellular species, which have been evolving towards a smaller genome (2, 3), the viral lineages have diversified by reductive evolution into a myriad of viruses with smaller genome and diverse life cycles (6, 8). One of the most remarkable implications of the fusion model is that numerous cellular species have evolved into viral lineages throughout the history of life and that this process is still active.

      This radical evolutionary theory on the nature and origin of viral lineages also addresses one of the most persisting and intriguing issue in biology, an issue that has puzzled scientists and philosophers for more than a century: are viruses alive? If viral lineages originated from cellular microorganisms as proposed in the fusion model, then, there are few remaining arguments against their living status and their rightful place on the Tree of Life (8).

      References

      (1) Philippe N. et al., Pandoraviruses: amoeba viruses with genomes up to 2.5 Mb reaching that of parasitic eukaryotes. Science 341, 281, (2013). Philippe N, 2013

      (2) Keeling PJ, Corradi N. Shrink it or lose it: balancing loss of function with shrinking genomes in the microsporidia. Virulence 2, 67, (2011). Keeling PJ, 2011

      (3) McCutcheon JP, Moran NA. Extreme genome reduction in symbiotic bacteria. Nature reviews. Microbiology 10, 13, (2011). McCutcheon JP, 2011

      (4) Neiman AM. Sporulation in the budding yeast Saccharomyces cerevisiae. Genetics 189, 737, (2011). Neiman AM, 2011

      (5) Pennisi E. Microbiology. Ever-bigger viruses shake tree of life. Science 341, 226, (2013). Pennisi E, 2013

      (6) Bandea CI. A new theory on the origin and the nature of viruses. Journal of Theoretical Biology 105, 591, (1983). Bândea CI, 1983

      (7) Claverie JM. Viruses take center stage in cellular evolution. Genome Biol. 7, 110, (2006). Claverie JM, 2006

      (8) Bandea CI. The origin and evolution of viruses as molecular organisms. Nature Precedings: http://precedings.nature.com/documents/3886/version/1; (2009).

      (9) Forterre P. Giant viruses: conflicts in revisiting the virus concept. Intervirology 53, 362, (2010). Forterre P, 2010

      (10) Hoffmann R, Michel R, Müller KD, Schmid EN. Archaea-like endocytobiotic organisms isolated from Acanthamoeba sp. (Gr II). Endocytobiosis & Cell Res.12, 185, (1998). http://zs.thulb.uni-jena.de/servlets/MCRFileNodeServlet/jportal_derivate_00100794/ECR_12_1997_185-188_Hoffmann.pdf

      (11) Scheid P, Zoller L, Pressmar S, Richard G, Michel R. An extraordinary endocytobiont in Acanthamoeba sp. isolated from a patient with keratitis. Parasitol. Res.102, 945, (2008). Scheid P, 2008


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    1. On 2013 Oct 31, John Cannell commented:

      The authors stated that markers of oxidative stress are present in autism spectrum disorder (ASD). I wonder if the authors are aware that the genes for the antioxidants superoxide dismutase and thioredoxin reductase are directly up-regulated by the secosteroid 1,25 di-hydroxy vitamin D3 (calcitriol). I believe both genes also harbor a vitamin D response element.

      Peehl DM, Shinghal R, Nonn L, Seto E, Krishnan AV, Brooks JD, Feldman D. Molecular activity of 1,25‐dihydroxyvitamin D3 in primary cultures of human prostatic epithelial cells revealed by cDNA microarray analysis. J. Steroid Biochem Mol. Biol 2004;92:131–141. PMID:15555907>

      Calcitriol also directly up-regulates glutathione reductase and increases glutathione levels.

      Jain SK, et alo. Vitamin D upregulates glutamate cysteine ligase and glutathione reductase, and GSH formation, and decreases ROS and MCP-1 and IL-8 secretion in high-glucose exposed U937 monocytes. Biochem Biophys Res Commun. 2013 Jul 19;437(1):7-11. doi: 10.1016/j.bbrc.2013.06.004. Jain SK, 2013

      Also, supplemental vitamin D significantly reduces oxidative stress in humans.

      Nikooyeh B, et al. Daily intake of vitamin D- or calcium-vitamin D-fortified Persian yogurt drink (doogh) attenuates diabetes-induced oxidative stress: evidence for antioxidative properties of vitamin D.J Hum Nutr Diet. 2013 Jul 5. doi: 10.1111/jhn.12142. Nikooyeh B, 2014

      Asemi Z, et al. Vitamin D supplementation affects serum high-sensitivity C-reactive protein, insulin resistance, and biomarkers of oxidative stress in pregnant women. J Nutr. 2013 Sep;143(9):1432-8. doi: 10.3945/jn.113.177550. Asemi Z, 2013

      Thus the vitamin D theory of ASD (vitamin D deficiency being the environmental risk factor for this highly heritable disorder) is consistent with the authors work. Three recent studies, using community controls, have found 25(OH)D levels are significantly lower in children with ASD. Two of the studies below (Mostafa et al and Gong et al) also found ASD severity, as rated on standard ASD rating scales, is inversely correlated with 25(OH)D levels. Mostafa et al found an R value of -.86 for the association of serum 25(OH)D with ASD severity.

      Gong ZL, Luo CM, Wang L, Shen L, Wei F, Tong RJ, Liu Y. Serum 25-hydroxyvitamin D levels in Chinese children with autism spectrum disorders. Neuroreport. 2013 Oct 1. Gong ZL, 2014

      Meguid NA, Hashish AF, Anwar M, Sidhom G. Reduced serum levels of 25-hydroxy and 1,25-dihydroxy vitamin D in Egyptian children with autism. J Altern Complement Med. 2010 Jun;16(6):641-5. Meguid NA, 2010

      Mostafa GA, Al-Ayadhi LY.Reduced serum concentrations of 25-hydroxy vitamin D in children with autism: relation to autoimmunity. J Neuroinflammation. 2012 Aug 17;9:201. Mostafa GA, 2012

      There is a plethora of basic science explaining why low gestational or early childhood 25(OH)D levels would adversely effect brain development.

      Eyles DW, Feron F, Cui X, Kesby JP, Harms LH, Ko P, McGrath JJ, Burne TH. Developmental vitamin D deficiency causes abnormal brain development. Psychoneuroendocrinology. 2009 Dec;34 Suppl 1:S247-57. doi: 10.1016/j.psyneuen.2009.04.015. Epub . Review. Eyles DW, 2009

      DeLuca GC, Kimball SM, Kolasinski J, Ramagopalan SV, Ebers GC. Review: the role of vitamin D in nervous system health and disease. Neuropathol Appl Neurobiol. 2013 Aug;39(5):458-84. doi: 10.1111/nan.12020. DeLuca GC, 2013

      Eyles DW, Burne TH, McGrath JJ. Vitamin D, effects on brain development, adult brain function and the links between low levels of vitamin D and neuropsychiatric disease. Front Neuroendocrinol. 2013 Jan;34(1):47-64. doi: 10.1016/j.yfrne.2012.07.001. Epub 2012 Jul 11. Review. Eyles DW, 2013

      Furthermore, the vitamin D theory of autism explains most of the epidemiological facts of ASD.

      Cannell JJ. On the aetiology of autism. Acta Paediatr. 2010 Aug;99(8):1128-30. Cannell JJ, 2010

      Cannell JJ. Autism and vitamin D. Med Hypotheses. 2008;70(4):750-9. Cannell JJ, 2008

      70% of American toddlers do not take


      This comment, imported by Hypothesis from PubMed Commons, is licensed under CC BY.

    1. On 2014 Dec 05, Gaetano Santulli commented:

      Jiang and colleagues report that beta2-adrenergic receptor (B2AR) knockout (KO) mice exhibit a diabetic retinopathy phenotype. We recently demonstrated that B2AR KO mice display a progressive impairment in insulin release that leads to glucose intolerance (1). Our report, which seems to be mechanistically important in the pathophysiology of diabetic rethinopathy (if an animal is glucose intolerant a diabetic retinophaty phenotype appears to be more than obvious) is completely ignored by the Authors. A functional role for B2AR in the regulation of insulin secretion and thereby in the pathogenesis of diabetes had been suggested by the evidence of a decreased number of B2AR in type I diabetes patients (2, 3). Findings from other groups support such a mechanism (4-7). In addition, human polymorphisms in the B2AR gene have been associated with obesity and other metabolic disorders (8, 9). Moreover, the Authors state that B2AR KO mice exhibit attributes of retinal changes common in diabetes, despite normal glucose levels. However, they do not provide any experiment to show glucose (or insulin) levels, nor in basal conditions, nor after a challenge, nor during a clamp assay. Similarly, the Authors also state that in their previous studies they have shown that B1AR KO mice exhibit retinal changes similar to diabetic animals in spite of normal glucose levels, quoting a paper in which there is no experiment showing the claimed normal glucose levels, as well.

      We believe that the Readers will appreciate a clarification on these studies by the Authors and the Editors.

      Gaetano Santulli MD, PhD 1,2, and Guido Iaccarino MD, PhD 3,4

      From the Departments of 1Translational Medical Sciences and 2Advanced Biomedical Sciences, Federico II University, Naples Italy; 3Department of Medicine and Surgery, University of Salerno, Salerno, Italy; 4Multimedica Research Hospital, Milan, Italy.

      Essential References 1. Santulli G, Lombardi A, Sorriento D, Anastasio A, Del Giudice C, Formisano P, et al. Age-related impairment in insulin release: the essential role of beta(2)-adrenergic receptor. Diabetes. 2012;61(3):692-701. doi: 10.2337/db11-1027. PubMed PMID: 22315324; PubMed Central PMCID: PMC3282797; http://www.ncbi.nlm.nih.gov/pubmed/22315324

      1. Schwab KO, Bartels H, Martin C, Leichtenschlag EM. Decreased beta 2-adrenoceptor density and decreased isoproterenol induced c-AMP increase in juvenile type I diabetes mellitus: an additional cause of severe hypoglycaemia in childhood diabetes? European journal of pediatrics. 1993;152(10):797-801. http://www.ncbi.nlm.nih.gov/pubmed/8223779. PubMed PMID: 8223779; http://www.ncbi.nlm.nih.gov/pubmed/8223779.
      2. Noji T, Tashiro M, Yagi H, Nagashima K, Suzuki S, Kuroume T. Adaptive regulation of beta-adrenergic receptors in children with insulin dependent diabetes mellitus. Hormone and metabolic research. 1986;18(9):604-6. Epub 1986/09/01. doi: 10.1055/s-2007-1012385. PubMed PMID: 3023224; http://www.ncbi.nlm.nih.gov/pubmed/3023224.
      3. Panagiotidis G, Stenstrom A, Lundquist I. Influence of beta 2-adrenoceptor stimulation and glucose on islet monoamine oxidase activity and insulin secretory response in the mouse. Pancreas. 1993;8(3):368-74. Epub 1993/05/01. http://www.ncbi.nlm.nih.gov/pubmed/8387193. PubMed PMID: 8387193; http://www.ncbi.nlm.nih.gov/pubmed/8387193.
      4. Loubatieres A, Mariani MM, Sorel G, Savi L. The action of beta-adrenergic blocking and stimulating agents on insulin secretion. Characterization of the type of beta receptor. Diabetologia. 1971;7(3):127-32. http://www.ncbi.nlm.nih.gov/pubmed/4397807. PubMed PMID: 4397807; http://www.ncbi.nlm.nih.gov/pubmed/4397807.
      5. Ahren B, Jarhult J, Lundquist I. Insulin secretion induced by glucose and by stimulation of beta 2 -adrenoceptors in the rat. Different sensitivity to somatostatin. Acta physiologica Scandinavica. 1981;112(4):421-6. http://www.ncbi.nlm.nih.gov/pubmed/6119001. PubMed PMID: 6119001; http://www.ncbi.nlm.nih.gov/pubmed/6119001.
      6. Asensio C, Jimenez M, Kuhne F, Rohner-Jeanrenaud F, Muzzin P. The lack of beta-adrenoceptors results in enhanced insulin sensitivity in mice exhibiting increased adiposity and glucose intolerance. Diabetes. 2005;54(12):3490-5. Epub 2005/11/25. doi: 54/12/3490 [pii]. PubMed PMID: 16306366; http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=16306366.
      7. Large V, Hellstrom L, Reynisdottir S, Lonnqvist F, Eriksson P, Lannfelt L, et al. Human beta-2 adrenoceptor gene polymorphisms are highly frequent in obesity and associate with altered adipocyte beta-2 adrenoceptor function. The Journal of clinical investigation. 1997;100(12):3005-13. Epub 1998/01/31. doi: 10.1172/JCI119854. PubMed PMID: 9399946; PubMed Central PMCID: PMC508512; http://www.ncbi.nlm.nih.gov/pubmed/9399946.
      8. Thomsen M, Dahl M, Tybjaerg-Hansen A, Nordestgaard BG. beta2-adrenergic receptor Thr164Ile polymorphism, obesity, and diabetes: comparison with FTO, MC4R, and TMEM18 polymorphisms in more than 64,000 individuals. The Journal of clinical endocrinology and metabolism. 2012;97(6):E1074-9. doi: 10.1210/jc.2011-3282. PubMed PMID: 22466342; http://www.ncbi.nlm.nih.gov/pubmed/22466342


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    1. On 2013 Oct 31, John Cannell commented:

      The authors found markers oxidative stress is present in autism spectrum disorder (ASD). I wonder if the authors are aware that the genes for the antioxidants superoxide dismutase and thioredoxin reductase are directly up-regulated by the secosteroid 1,25 di-hydroxy vitamin D3 (calcitriol). I believe both genes also harbor a vitamin D response element.

      Peehl DM, Shinghal R, Nonn L, Seto E, Krishnan AV, Brooks JD, Feldman D. Molecular activity of 1,25‐dihydroxyvitamin D3 in primary cultures of human prostatic epithelial cells revealed by cDNA microarray analysis. J. Steroid Biochem Mol. Biol 2004;92:131–141. PMID:15555907>

      Calcitriol also directly up-regulates glutathione reductase and increases glutathione levels.

      Jain SK, et alo. Vitamin D upregulates glutamate cysteine ligase and glutathione reductase, and GSH formation, and decreases ROS and MCP-1 and IL-8 secretion in high-glucose exposed U937 monocytes. Biochem Biophys Res Commun. 2013 Jul 19;437(1):7-11. doi: 10.1016/j.bbrc.2013.06.004. Jain SK, 2013

      Also, supplemental vitamin D significantly reduces oxidative stress in humans.

      Nikooyeh B, et al. Daily intake of vitamin D- or calcium-vitamin D-fortified Persian yogurt drink (doogh) attenuates diabetes-induced oxidative stress: evidence for antioxidative properties of vitamin D.J Hum Nutr Diet. 2013 Jul 5. doi: 10.1111/jhn.12142. Nikooyeh B, 2014

      Asemi Z, et al. Vitamin D supplementation affects serum high-sensitivity C-reactive protein, insulin resistance, and biomarkers of oxidative stress in pregnant women. J Nutr. 2013 Sep;143(9):1432-8. doi: 10.3945/jn.113.177550. Asemi Z, 2013

      Thus the vitamin D theory of ASD (vitamin D deficiency being the environmental risk factor for this highly heritable disorder) is consistent with the authors work. Three recent studies, using community controls, have found 25(OH)D levels are significantly lower in children with ASD. Two of the studies below (Mostafa et al and Gong et al) also found ASD severity, as rated on standard ASD rating scales, is inversely correlated with 25(OH)D levels. Mostafa et al found an R value of -.86 for the association of serum 25(OH)D with ASD severity.

      Gong ZL, Luo CM, Wang L, Shen L, Wei F, Tong RJ, Liu Y. Serum 25-hydroxyvitamin D levels in Chinese children with autism spectrum disorders. Neuroreport. 2013 Oct 1. Gong ZL, 2014

      Meguid NA, Hashish AF, Anwar M, Sidhom G. Reduced serum levels of 25-hydroxy and 1,25-dihydroxy vitamin D in Egyptian children with autism. J Altern Complement Med. 2010 Jun;16(6):641-5. Meguid NA, 2010

      Mostafa GA, Al-Ayadhi LY.Reduced serum concentrations of 25-hydroxy vitamin D in children with autism: relation to autoimmunity. J Neuroinflammation. 2012 Aug 17;9:201. Mostafa GA, 2012

      There is a plethora of basic science explaining why low gestational or early childhood 25(OH)D levels would adversely effect brain development.

      Eyles DW, Feron F, Cui X, Kesby JP, Harms LH, Ko P, McGrath JJ, Burne TH. Developmental vitamin D deficiency causes abnormal brain development. Psychoneuroendocrinology. 2009 Dec;34 Suppl 1:S247-57. doi: 10.1016/j.psyneuen.2009.04.015. Epub . Review. Eyles DW, 2009

      DeLuca GC, Kimball SM, Kolasinski J, Ramagopalan SV, Ebers GC. Review: the role of vitamin D in nervous system health and disease. Neuropathol Appl Neurobiol. 2013 Aug;39(5):458-84. doi: 10.1111/nan.12020. DeLuca GC, 2013

      Eyles DW, Burne TH, McGrath JJ. Vitamin D, effects on brain development, adult brain function and the links between low levels of vitamin D and neuropsychiatric disease. Front Neuroendocrinol. 2013 Jan;34(1):47-64. doi: 10.1016/j.yfrne.2012.07.001. Epub 2012 Jul 11. Review. Eyles DW, 2013

      Furthermore, the vitamin D theory of autism explains most of the epidemiological facts of ASD.

      Cannell JJ. On the aetiology of autism. Acta Paediatr. 2010 Aug;99(8):1128-30. Cannell JJ, 2010

      Cannell JJ. Autism and vitamin D. Med Hypotheses. 2008;70(4):750-9. Cannell JJ, 2008

      70% of American toddlers do not take the Ameri


      This comment, imported by Hypothesis from PubMed Commons, is licensed under CC BY.

    1. On 2013 Oct 31, John Cannell commented:

      The authors found markers oxidative stress is present in autism spectrum disorder (ASD). I wonder if the authors are aware that the genes for the antioxidants superoxide dismutase and thioredoxin reductase are directly up-regulated by the secosteroid 1,25 di-hydroxy vitamin D3 (calcitriol). I believe both genes also harbor a vitamin D response element.

      Peehl DM, Shinghal R, Nonn L, Seto E, Krishnan AV, Brooks JD, Feldman D. Molecular activity of 1,25‐dihydroxyvitamin D3 in primary cultures of human prostatic epithelial cells revealed by cDNA microarray analysis. J. Steroid Biochem Mol. Biol 2004;92:131–141. PMID:15555907>

      Calcitriol also directly up-regulates glutathione reductase and increases glutathione levels.

      Jain SK, et alo. Vitamin D upregulates glutamate cysteine ligase and glutathione reductase, and GSH formation, and decreases ROS and MCP-1 and IL-8 secretion in high-glucose exposed U937 monocytes. Biochem Biophys Res Commun. 2013 Jul 19;437(1):7-11. doi: 10.1016/j.bbrc.2013.06.004. Jain SK, 2013

      Also, supplemental vitamin D significantly reduces oxidative stress in humans.

      Nikooyeh B, et al. Daily intake of vitamin D- or calcium-vitamin D-fortified Persian yogurt drink (doogh) attenuates diabetes-induced oxidative stress: evidence for antioxidative properties of vitamin D.J Hum Nutr Diet. 2013 Jul 5. doi: 10.1111/jhn.12142. Nikooyeh B, 2014

      Asemi Z, et al. Vitamin D supplementation affects serum high-sensitivity C-reactive protein, insulin resistance, and biomarkers of oxidative stress in pregnant women. J Nutr. 2013 Sep;143(9):1432-8. doi: 10.3945/jn.113.177550. Asemi Z, 2013

      Thus the vitamin D theory of ASD (vitamin D deficiency being the environmental risk factor for this highly heritable disorder) is consistent with the authors work. Three recent studies, using community controls, have found 25(OH)D levels are significantly lower in children with ASD. Two of the studies below (Mostafa et al and Gong et al) also found ASD severity, as rated on standard ASD rating scales, is inversely correlated with 25(OH)D levels. Mostafa et al found an R value of -.86 for the association of serum 25(OH)D with ASD severity.

      Gong ZL, Luo CM, Wang L, Shen L, Wei F, Tong RJ, Liu Y. Serum 25-hydroxyvitamin D levels in Chinese children with autism spectrum disorders. Neuroreport. 2013 Oct 1. Gong ZL, 2014

      Meguid NA, Hashish AF, Anwar M, Sidhom G. Reduced serum levels of 25-hydroxy and 1,25-dihydroxy vitamin D in Egyptian children with autism. J Altern Complement Med. 2010 Jun;16(6):641-5. Meguid NA, 2010

      Mostafa GA, Al-Ayadhi LY.Reduced serum concentrations of 25-hydroxy vitamin D in children with autism: relation to autoimmunity. J Neuroinflammation. 2012 Aug 17;9:201. Mostafa GA, 2012

      There is a plethora of basic science explaining why low gestational or early childhood 25(OH)D levels would adversely effect brain development.

      Eyles DW, Feron F, Cui X, Kesby JP, Harms LH, Ko P, McGrath JJ, Burne TH. Developmental vitamin D deficiency causes abnormal brain development. Psychoneuroendocrinology. 2009 Dec;34 Suppl 1:S247-57. doi: 10.1016/j.psyneuen.2009.04.015. Epub . Review. Eyles DW, 2009

      DeLuca GC, Kimball SM, Kolasinski J, Ramagopalan SV, Ebers GC. Review: the role of vitamin D in nervous system health and disease. Neuropathol Appl Neurobiol. 2013 Aug;39(5):458-84. doi: 10.1111/nan.12020. DeLuca GC, 2013

      Eyles DW, Burne TH, McGrath JJ. Vitamin D, effects on brain development, adult brain function and the links between low levels of vitamin D and neuropsychiatric disease. Front Neuroendocrinol. 2013 Jan;34(1):47-64. doi: 10.1016/j.yfrne.2012.07.001. Epub 2012 Jul 11. Review. Eyles DW, 2013

      Furthermore, the vitamin D theory of autism explains most of the epidemiological facts of ASD.

      Cannell JJ. On the aetiology of autism. Acta Paediatr. 2010 Aug;99(8):1128-30. Cannell JJ, 2010

      Cannell JJ. Autism and vitamin D. Med Hypotheses. 2008;70(4):750-9. Cannell JJ, 2008

      70% of American toddlers do not take the Ameri


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    1. On 2014 Sep 15, Andrea Messori commented:

      Bayesian models implemented under Winbugs: can they be considered the new standard for conducting a network meta-analysis?

      When multiple agents are available to treat the same disease condition, network meta-analysis of randomized controlled trials (RCTs) has the purpose of synthesising the available evidence. In the application of this technique, both direct and indirect comparisons are made between individual treatments. Direct comparisons are those for which a “real” randomised study is available while indirect comparisons are those for which no real trial has been conducted.

      Initial approaches for conducting network meta-analyses were designed to separately evaluate each indirect comparison; hence, there were as many separate analyses as the number of indirect comparisons [1,3]. More recently, the Bayesian approach for network meta-analysis has emerged as the new standard in this area [4-7]. This method relies on a sort of “all-in-one” modelling in which a single model incorporates the evidence available from all clinical trials and estimates, through a unified approach, all comparative results for both direct and indirect comparisons.

      In network meta-analysis, the phases of literature search and data extraction do not differ from those commonly employed for standard meta-analysis [5,6]. As regards the type of end-points, network meta-analysis favours binary end-points [4] as opposed to continuous ones. Hence, irrespective of whether the analysis is aimed at evaluating effectiveness or safety, the starting material for conducting a network meta-analysis is given by the rates of end-point occurrence (i.e. numerator and denominator) for each arm of each RCT.

      In present times, statistical modelling for network meta-analysis recognises its new standard in these Bayesian approaches based on an “all-in-one” model and implemented in the WINBUGS environment [4,7]. This approach has found a wide acceptance also because the methods and the software, developed by an authoritative institution (the NICE), are freely available [7]. The code for these estimations is available as fixed-effect model and random-effect model.

      The Winbugs Bayesian model employs a random sequence of chains, called a Markov chain Monte Carlo simulation. Each chain must be run for a length of time sufficient to allow model convergence (burn-in) before estimating posterior probabilities. Typically, the random-effect logistic regression model is created according to the binary outcome of subjects reaching the end-point concerned. Randomization within each study is preserved by specifying each arm in each study separately, thus accounting for the effect of the comparator. Results are generally presented as odds ratio or log odds ratio. Heterogeneity among studies can be accounted by applying meta-regression techniques and by consequently generating an index of heterogeneity [4,7].

      As regards the software, these analyses can be conducted by using the software package WinBUGS 1.4.3 (Cambridge, United Kingdom) in combination with the meta-analysis code developed by the National Institute for Health and Care Excellence[7]. Odds-ratio is the typical outcome measure of this software; however, odds-ratios can be converted into risk ratios or risk differences by application of standard equations [8,9]

      Sobieraj and co-workers [10] have published an article that reviews all previously published studies that have adopted the Bayesian approach.

      In conclusion, the present literature clearly indicates that Bayesian network meta-analysis can be considered the new standard in this field.

      References

      1. Lumley T. Network meta-analysis for indirect treatment comparisons. Stat Med 2002, 30; 21(16): 2313-24

      2. Bucher HC, Guyatt GH, Griffith LE, Walter SD. The results of direct and indirect treatment comparisons in meta-analysis of randomized controlled trials. J Clin Epidemiol 1997;50(6):683–91

      3. Wells GA, Sultan SA, Chen L, Khan M, Coyle D. Indirect treatment comparison [computer program]. Version 1.0. Ottawa: Canadian Agency for Drugs and Technologies in Health; 2009. Software available at:http://www.cadth.ca/preview/en/resources/itc-user-guide

      4. Greco T, Landoni G, Biondi-Zoccai G, D'Ascenzo F, Zangrillo A. A Bayesian network meta-analysis for binary outcome: how to do it. Stat Methods Med Res. 2013 Oct 28.

      5. Hoaglin DC, Hawkins N, Jansen JP,. et al. Conducting Indirect-Treatment-Comparison and Network-Meta-Analysis Studies: Report of the ISPOR Task Force on Indirect Treatment Comparisons Good Research Practices—Part 2. Value Health 2011;14:429-37.

      6. Jansen JP, Fleurence R, Devine B, et al. Interpreting Indirect Treatment Comparisons and Network Meta-Analysis for Health-Care Decision Making: Report of the ISPOR Task Force on Indirect Treatment Comparisons Good Research Practices: Part 1. Value Health 2011;14:417-28.

      7. NICE Clinical Guidelines, No. 92. National Clinical Guideline Centre – Acute and Chronic Conditions (UK). London: Royal College of Physicians (UK); 2010. Available at http://www.ncbi.nlm.nih.gov/books/NBK116530/ Accessed 14 August 2014

      8. Zhang J, Yu KF. What's the relative risk? A method of correcting the odds ratio in cohort studies of common outcomes. JAMA. 1998 Nov 18;280(19):1690-1.

      9. ClinCalc Website. Odds-ratio to risk ratio. http://clincalc.com/Stats/ConvertOR.aspx

      10. Sobieraj DM, Cappelleri JC, Baker WL, Phung OJ, White CM, Coleman CI. Methods used to conduct and report Bayesian mixed treatment comparisons published in the medical literature: a systematic review. BMJ Open. 2013 Jul 21;3(7). pii:e003111. doi: 10.1136/bmjopen-2013-003111. Print 2013.


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    1. On 2014 Feb 04, Jean-Jacques Letesson commented:

      In the bacteria and plasmid section of this paper, the readers should be aware that it is impossible to grow B. melitensis in the minimal medium stated "B. melitensis 16 M was routinely cultured in rich medium Tryptic Soy Broth (TSB) or in minimal medium GEM7.0 (MgSO4.7H2O 0.2 g/L, Citric acid•H2O 2.0 g/L, K2HPO4 10.0 g/L, NaNH4HPO4.4H2O 3.5 g/L, Glucose 20 g/L, pH 7.0)" All Brucella strictly require biotin, panthotenate, thiamine and nicotinamide as additional factors. In addition 20g/L of glucose is almost ten times as much as normaly needed.


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    1. On 2013 Oct 31, John Cannell commented:

      The authors reported that immune system dysregulation is common in autism spectrum disorder (ASD). Vitamin D deficiency produces very similar immune dysregulation.

      Prietl B, 2013

      Kamen DL, 2010

      Yang CY, 2013

      Baeke F, 2010

      Thus the vitamin D theory of ASD (vitamin D deficiency being the environmental risk factor for this highly heritable disorder) is consistent with the authors work. Three recent studies, using community controls, have found 25(OH)D levels are significantly lower in children with ASD. Two of the studies below (Mostafa et al and Gong et al) also found ASD severity, as rated on standard ASD rating scales, is inversely correlated with 25(OH)D levels. Mostafa et al found an R value of -.86 for the association of serum 25(OH)D with ASD severity.

      Gong ZL, Luo CM, Wang L, Shen L, Wei F, Tong RJ, Liu Y. Serum 25-hydroxyvitamin D levels in Chinese children with autism spectrum disorders. Neuroreport. 2013 Oct 1. Gong ZL, 2014

      Meguid NA, Hashish AF, Anwar M, Sidhom G. Reduced serum levels of 25-hydroxy and 1,25-dihydroxy vitamin D in Egyptian children with autism. J Altern Complement Med. 2010 Jun;16(6):641-5. Meguid NA, 2010

      Mostafa GA, Al-Ayadhi LY.Reduced serum concentrations of 25-hydroxy vitamin D in children with autism: relation to autoimmunity. J Neuroinflammation. 2012 Aug 17;9:201. Mostafa GA, 2012

      There is a plethora of basic science explaining why low gestational or early childhood 25(OH)D levels would adversely effect brain development.

      Eyles DW, Feron F, Cui X, Kesby JP, Harms LH, Ko P, McGrath JJ, Burne TH. Developmental vitamin D deficiency causes abnormal brain development. Psychoneuroendocrinology. 2009 Dec;34 Suppl 1:S247-57. doi: 10.1016/j.psyneuen.2009.04.015. Epub . Review. Eyles DW, 2009

      DeLuca GC, Kimball SM, Kolasinski J, Ramagopalan SV, Ebers GC. Review: the role of vitamin D in nervous system health and disease. Neuropathol Appl Neurobiol. 2013 Aug;39(5):458-84. doi: 10.1111/nan.12020. DeLuca GC, 2013

      Eyles DW, Burne TH, McGrath JJ. Vitamin D, effects on brain development, adult brain function and the links between low levels of vitamin D and neuropsychiatric disease. Front Neuroendocrinol. 2013 Jan;34(1):47-64. doi: 10.1016/j.yfrne.2012.07.001. Epub 2012 Jul 11. Review. Eyles DW, 2013

      Furthermore, the vitamin D theory of autism explains most of the epidemiological facts of ASD.

      Cannell JJ. On the aetiology of autism. Acta Paediatr. 2010 Aug;99(8):1128-30. Cannell JJ, 2010

      Cannell JJ. Autism and vitamin D. Med Hypotheses. 2008;70(4):750-9. Cannell JJ, 2008

      70% of American toddlers do not take the American Pediatric Association's recommended vitamin D supplement of 400 IU/day and few toddlers or pregnant women get any sunshine due to the sun scare. As vitamin D fortified milk consumption and sun exposure has declined, so have toddlers and pregnant women’s vitamin D levels. The dramatic increase in the incidence of ASD occurred during the same time vitamin D levels were falling in toddlers and pregnant women.

      Cannell JJ. Autism, will vitamin D treat core symptoms? Medical Hypotheses. 2013 Aug;81(2):195-8. Cannell JJ, 2013

      Some autism researchers seem cognizant of the entire body of autism research. For example, a group of well-known European ASD researchers, including Professor Christopher Gillberg of the Gillberg Neuropsychiatric Institute, have recently called for the need for “urgent research” into the vitamin D deficiency theory of ASD.

      Kočovská E, Fernell E, Billstedt E, Minnis H, Gillberg C. Vitamin D and autism: clinical review. Res Dev Disabil. 2012 Sep-Oct;33(5):1541-50. doi: 10.1016/j.ridd.2012.02.015. Epub 2012 Apr 21.Kočovská E, 2012

      Until all autism researchers become cognizant of the wider body of scientific research, we will continue to wonder how to prevent - and perhaps even treat - this modern day plague.

      John J Cannell, MD

      Vitamin D Council

      http://www.vitamindcouncil.org


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    1. On 2015 Nov 13, University of Kansas School of Nursing Journal Club commented:

      Reviewers: (Team 10) Lucy Bush, Sydney Jordan, Elijah Penny, Alex Noller, Parwana Noori, Cassidy Playter, Brittany Winter (Senior Nursing Students – Class of 2016)

      Background:

      This article was chosen based on how it directly correlates with the transformational leadership section we recently covered in lecture. This study explores how transformational leadership effects nursing innovation and the role of an organizational climate. This article bridges the gap in knowledge present between transformational leadership of management and the behavior of employees subjected to this leadership style. As discussed by Marquis and Huston (2015), transformational leadership by definition is designed to encourage nurses to be innovative, compassionate, and caring; however, this definition does not cover what kinds of innovative behaviors nurses under transformational management exhibit. The purpose of us analyzing this article was to discover what specific behaviors that could be evoked by the consistent support of a manager with a transformational leadership style. The authors of the article conducted the study in three regional hospitals in Taiwan that yielded a different cultural perspective of nursing and leadership, (Weng, Huang, Chen, & Chang, 2013, p. 427). Much effort and resources are focused on nurses’ performance in the clinical setting, and transformational leadership has its proper place in the drive to improve nursing innovation.

      Methods:

      The databases used to retrieve this article were The Biosemantics Group, CINAHL, and PubMed. The article we choose was originally not found when using the following Boolean search: “transformational leadership” AND “nursing.” Even though the subject heading being searched was adjusted from title to abstract, CINAHL revealed no articles of interest. When PubMed was searched for: “the impact of transformational leadership,” the article we decided upon was found. The study employed a cross-sectional research design that used personal reporting from nursing professionals. Data was collected using a questionnaire survey consisting of a 5-point Likert scale sent out to 150 selected nurses from three separate Taiwan hospitals (Weng et al., 2013, p. 431). The questionnaires were sent out anonymously to nurses in the selected hospitals. A total of 450 questionnaires were sent out from 11 April to 15 May 2011 and the research team obtained a total of 439 questionnaires with viable data (Weng et al., 2013, p. 431). The target population of nurses was selected primarily based upon their age, educational background, role in the clinical ladder, marital status, department of employment, and hospital experience in order to eliminate extraneous factors that could have affected the implication of the results on nursing practice (Weng et al., 2013, p. 431). The study also recognized that inspirational motivation, idealized influence, and a patient safety climate could also positively influence the innovation of staff nurses in Taiwan hospitals. After removing all potentially compromising variables, the research team analyzed the impact of transformational leadership on nurse innovation.

      Findings:

      The key findings of this study showed that their initial hypothesis one was correct: transformational leadership has a significantly positive influence on nurse innovation behavior. The questionnaires would go on to reveal that nurse managers can indirectly, positively influence nurse innovative behaviors through the establishment of a culture of patient safety and innovation (Weng et al., 2013). In other words, organizational climate directed by transformational leadership could impacts innovative behavior. A large limitation is that the study was only carried out in three Taiwanese hospitals; therefore, it would be hard to say that the results are externally valid or applicable to all nursing care across the world. Further research will need to be carried out in U.S. hospital settings to determine if the effects seen in Taiwanese hospitals were not influenced by other factors such as geography, culture or traditions not evident in the U.S. care settings. Another difference noted in this study was the time frame of data collection. The questionnaires were only sent out for a little over a month-long period in 2011; therefore, the data collected only represents a time-limited analysis of the effects of transformational leadership on nurse innovative behaviors. In the future, it would be recommended that the study be carried out over a considerably longer time frame to ensure data collection evidenced sustained nursing innovative behaviors. On a macro-system level, this problem impacts nearly all nursing units across the world because nursing innovations in patient care could be applicable to all scenarios in which nursing care is needed. From a microsystem perspective, nurse managers interested in boosting creativity and innovation among their unit staff should understand the indirect influence transformation leadership and organizational climate can have on nursing innovative behaviors. The importance of innovation is highly applicable to all hospital development and especially nursing care development, as nurses are deeply involved in direct patient care and the practice of healthcare.

      Implications:

      The study reports the significance of transformational leadership. This implies that hospitals should develop and encourage transformational leadership approach by designing and implementing leadership training programs aimed at developing cultures of patient safety and innovation. On the microsystems level, the findings of this study demonstrate that nurse managers can foster innovation by involving nurses in team projects to develop and implement creative ideas. Throughout the implementation and evaluation phases of nurse innovative projects, nurse manager should recognize success and encourage behaviors attributed to the success in an effort to sustain such innovation. Weng (2013) also stated the importance of establishing a culture of patient safety through development of a patient safety problem-reporting network. Not only does patient safety reporting make nurse managers aware of threats to patient safety, but it also supports development of innovations through staff involvement. This literature is important to our group because it allows us to explore what transformational leadership can look like at the microsystems level. Only through continual reflection on our own practices, can we accomplish changes in our leadership behaviors in the clinical setting. This article models the important affects that we as future nurse leaders can have on the safety of the patients we are caring for. Personal empowerment exercises like the discovery of these cultures of innovation have proved to be inspirational to us throughout our learning process.

      References

      Weng, R. H., Huang, C. Y., Chen, L. M., & Chang, L. Y. (2013). Exploring the impact of transformational leadership on nurse innovation behavior: a cross‐sectional study. Journal of nursing management. 23,4. doi:10.1111/jonm.12149

      Marquis, B., & Huston, C. (2015). Leadership Roles and Management functions in Nursing: Theory and Application. (8th ed). Wolster & Kluwer. Philadelphia. Chapter 3: Twenty-First Century Thinking about Leadership and Management, pp. 60-61.


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    1. On 2013 Oct 29, John Cannell commented:

      As the authors suggest, micronutrient deficiencies may explain their findings. One micronutrient that is depleted in multiparous women is vitamin D.

      Andersen LB, Abrahamsen B, Dalgård C, Kyhl HB, Beck-Nielsen SS, Frost-Nielsen M, Jørgensen JS, Barington T, Christesen HT. Parity and tanned white skin as novel predictors of vitamin D status in early pregnancy: a population-based cohort study. Clin Endocrinol (Oxf). 2013 Sep;79(3):333-41. doi: 10.1111/cen.12147. Epub 2013 Jul 2. Andersen LB, 2013

      Furthermore, the states with the highest participants in the Women's and Infant and Child program, which includes prenatal as well as postnatal vitamin D supplements, have significantly lower autism rates.

      Shamberger RJ. Autism rates associated with nutrition and the WIC program. Jn Am Coll Nutr. 2011 Oct;30(5):348-53. Shamberger RJ, 2011

      Three recent studies, using community controls, have found 25(OH)D levels are significantly lower in children with autism. Two of the studies below (Mostafa et al and Gong et al) also found autism severity, as rated on standard autism rating scales, is inversely correlated with 25(OH)D levels. Mostafa et al found an R value of -.86 for the association of serum 25(OH)D with autism severity.

      Gong ZL, Luo CM, Wang L, Shen L, Wei F, Tong RJ, Liu Y. Serum 25-hydroxyvitamin D levels in Chinese children with autism spectrum disorders. Neuroreport. 2013 Oct 1. Gong ZL, 2014

      Meguid NA, Hashish AF, Anwar M, Sidhom G. Reduced serum levels of 25-hydroxy and 1,25-dihydroxy vitamin D in Egyptian children with autism. J Altern Complement Med. 2010 Jun;16(6):641-5. Meguid NA, 2010

      Mostafa GA, Al-Ayadhi LY.Reduced serum concentrations of 25-hydroxy vitamin D in children with autism: relation to autoimmunity. J Neuroinflammation. 2012 Aug 17;9:201. Mostafa GA, 2012

      There is a plethora of basic science explaining why low gestational or early childhood 25(OH)D levels would adversely effect brain development.

      DeLuca GC, Kimball SM, Kolasinski J, Ramagopalan SV, Ebers GC. Review: the role of vitamin D in nervous system health and disease. Neuropathol Appl Neurobiol. 2013 Aug;39(5):458-84. doi: 10.1111/nan.12020. DeLuca GC, 2013

      Eyles DW, Feron F, Cui X, Kesby JP, Harms LH, Ko P, McGrath JJ, Burne TH. Developmental vitamin D deficiency causes abnormal brain development. Psychoneuroendocrinology. 2009 Dec;34 Suppl 1:S247-57. doi: 10.1016/j.psyneuen.2009.04.015. Epub . Review. Eyles DW, 2009

      Furthermore, the vitamin D theory of autism explains many of the epidemiological facts of autism.

      Cannell JJ. On the aetiology of autism. Acta Paediatr. 2010 Aug;99(8):1128-30. Cannell JJ, 2010

      Cannell JJ. Autism and vitamin D. Med Hypotheses. 2008;70(4):750-9. Cannell JJ, 2008

      70% of American toddlers do not take the American Pediatric Association's recommended vitamin D supplement of 400 IU/day.

      Cannell JJ. Autism, will vitamin D treat core symptoms? Medical Hypotheses. 2013 Aug;81(2):195-8. Cannell JJ, 2013

      A group of well-known European autism researchers, including Professor Christopher Gillberg of the Gillberg Neuropsychiatric Institute, have recently called for the need for “urgent research” into the theory of vitamin D deficiency and autism.

      Kočovská E, Fernell E, Billstedt E, Minnis H, Gillberg C. Vitamin D and autism: clinical review. Res Dev Disabil. 2012 Sep-Oct;33(5):1541-50. doi: 10.1016/j.ridd.2012.02.015. Epub 2012 Apr 21.Kočovská E, 2012

      The author's important finding of higher autism rates with lower inter-pregnancy intervals is entirely consistent with the vitamin D theory of autism.

      John J Cannell, MD

      Vitamin D Council

      http://www.vitamindcouncil.org


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    1. On 2014 Sep 09, David J Volkman commented:

      The following letter was sent to the NEJM and rejected after internal review after one day.

      Under-diagnosis of Lyme Borreliosis It was recently estimated that of the more than 300,000 annual borrelia infections (Lyme disease (LD)) in the US, the CDC reports only 30,000 (1). The two-tier serology criterion recommended by the CDC, derived from the 1994 Dearborn Conference (2), requires 5-10 antibody reactivities to confirm a case, resulting in many positive Lyme disease (LD) titers with fewer reactivities being ignored and untreated. In contrast, a single reactivity against a crude flagella antigen or a positive IgG ELISA against a whole cell borrelia sonicate (WCS) is often sufficient to detect new infection (3). In 1999 Felz reported 22/22 people with an erythema migrans rash in Georgia and South Carolina, areas the CDC insist is devoid of LD, had IgG antibody against the flagella (3). The WCS from the inexpensive, widely available B31 Long Island borrelia isolate has enough ubiquitous p41 flagella epitopes to detect borrelia infections across the US, Europe, and China (4). As shown in Table 1 specific antibodies may take more than 5 weeks to develop and if assayed too early may be absent. Table 1 shows the serology of a woman with a negative LD serology hospitalized with a diagnosis of aseptic meningitis. A week after discharge she had a highly positive ELISA, a strong anti-41 kd IgG band, and 3 IgM bands. She was treated with 4 weeks of oral doxycycline, recovered fully, and remains well 2 years later. Anti-borrelia antibodies can take 5 weeks to develop and may have reactivity only to the p41 flagella; obtained too early or requiring restrictive criteria, serology may be falsely reported as negative. Since Congress is considering closer oversight of FDA approved LD testing (5); it is imperative testing becomes evidence-based, sensitive, and reflects biomedical reality. The CDC’s current 20 year old criteria for LD testing leave many infected people with spurious false negative tests, undiagnosed, and untreated.   Table 1: Serologic Response to EM

      Date IgG/IgM EIA IgG bands IgM bands

      Early June noted 5 mm light brown bump on thigh June 27 negative none none negative July 8 5.49* P41 + p23,39,41 + IgM positive/WB negative < 5 bands

      August 1 month 100mg BID PO doxycycline Next year 4.79 p41, p23 + none negative

      • relative optical density (1.00 = 3 Standard Deviations greater than mean of negative controls)
      • present

      References 1. Kuehn BM. CDC Estimates 300000 US Cases of Lyme Disease Annually. JAMA.18, 2013. 310, 1110.

      1. CDC (1995) Recommendations for test performance and interpretation from the second national conference on serologic diagnosis of Lyme disease. Morbidity and Mortality Weekly Report 44, 590–591.
      2. Felz MW, Chandler FW Jr, Oliver JH Jr, Rahn DW, Schriefer ME. Solitary erythema migrans in Georgia and South Carolina. Arch Dermatol. 1999; 135:1317-26.

      3. Chao LL, Chen YJ, Shih CM. First isolation and molecular identification of Borrelia burgdorferi sensu stricto andBorrelia afzelii from skin biopsies of patients in Taiwan. Int J Infect Dis. 2011 Mar; 15:e182-7.

      4. Nelson C, Hojvat S, Johnson B, Petersen J, Schriefer M, Beard CB, Petersen L, Mead P. Concerns regarding a new culture method for Borrelia burgdorferi not approved for the diagnosis of Lyme disease. Centers for Disease Control and Prevention (CDC). MMWR Mor


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    1. On 2013 Dec 13, David Schindel commented:

      Marques, Maronna and Collins (1) rightly call on the biodiversity research community to include latitude/longitude data in database and published records of natural history specimens. However, they have overlooked an important signal that the community is moving in the right direction. The Consortium for the Barcode of Life (CBOL) developed a data standard for DNA barcoding (2) that was approved and implemented in 2005 by the International Nucleotide Sequence Database Collaboration (INSDC; GenBank, ENA and DDBJ) and revised in 2009. . All data records that meet the requirements of the data standard include the reserved keyword 'BARCODE'. The required elements include: (a) information about the voucher specimen from which the DNA barcode sequence was derived (e.g., species name, unique identifier in a specimen repository, country/ocean of origin); (b) a sequence from an approved gene region with minimum length and quality; and (c) primer sequences and the forward and reverse trace files. Participants in the workshops that developed the data standard decided to include latitude and longitude as strongly recommended elements but not as strict requirements for two reasons. First, many voucher specimens from which BARCODE records are generated may have been collected before GPS devices were available. Second, barcoding projects such as the Barcode of Wildlife Project (4) are concentrating on rare and endangered species. Publishing the GPS coordinates of collecting localities would facilitate illegal collecting and trafficking that could contribute to biodiversity loss. The BARCODE data standard is promoting precisely the trend toward georeferencing called for by Marques, Marrona and Collins. Table 1 shows that there are currently 346,994 BARCODE records in INSDC (3). Of these BARCODE records, 83% include latitude/longitude data. Despite not being a required element in the data standard, this level of georeferencing is much higher than for all cytochrome c oxidase I gene (COI), the BARCODE region, 16S rRNA, and cytochrome b (cytb), another mitochondrial region that was used used for species identification prior to the growth of barcoding. Data are also presented on the numbers and percentages of data records that include information on the voucher specimen from which the nucleotide sequence was obtained. In an increasing number of cases, these voucher specimen identifiers in INSDC are hyperlinked to the online specimen data records in museums, herbaria and other biorepositories. Table 2 provides these same data for the time interval used in the Marques et al. letter (1). These tables indicate the clear effect that the BARCODE data standard is having on the community’s willingness to provide more complete data documentation.

      See Tables 1 & 2

      The DNA barcoding community's data standard is demonstrating two positive trends: better documentation of specimens in natural history collections, and new connectivity between databases of species occurrences and DNA sequences. We believe that these trends will become standard practices in the coming years as more researchers, funders, publishers and reviewers acknowledge the value of, and begin to enforce compliance with the BARCODE data standard and related minimum information standards for marker genes (5).

      DAVID E. SCHINDEL(A), MICHAEL TRIZNA(A), SCOTT E. MILLER(A), ROBERT HANNER(B), PAUL D. N. HEBERT(B), SCOTT FEDERHEN(C), ILENE MIZRACHI(C)

      (A) National Museum of Natural History, Smithsonian Institution Smithsonian Institution, Washington, DC 20013–7012, USA. (B) University of Guelph, Ontario, Canada (C) National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda, MD, USA

      1. A.C. Marques, M.M. Maronna, A.G. Collins, Science 341, 1341 (2013)
      2. Consortium for the Barcode of Life, http://www.barcodeoflife.org/sites/default/files/DWG_data_standards-Final.pdf (2009)
      3. Data in Tables 1 and 2 were drawn from GenBank (www.ncbi.nlm.nih.gov/genbank/) [data as of 1 October 2013]
      4. Barcode of Wildlife Project, www.barcodeofwildlife.org (2013)
      5. Yilmaz, P., Kottmann, R., Field, D., Knight, R., Cole, J. R., Amaral-Zettler, L., et al. (2011). Minimum information about a marker gene sequence (MIMARKS) and minimum information about any (x) sequence (MIxS) specifications. Nature Biotechnology, 29(5), 415–420. doi:10.1038/nbt.1823


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    1. On 2013 Oct 31, John Cannell commented:

      The authors found markers oxidative stress is present in ASD. I wonder if the authors are aware that the genes for the antioxidants superoxide dismutase and thioredoxin reductase are directly up-regulated by the secosteroid 1,25 di-hydroxy vitamin D3 (calcitriol). I believe both genes also harbor a vitamin D response element.

      Peehl DM, Shinghal R, Nonn L, Seto E, Krishnan AV, Brooks JD, Feldman D. Molecular activity of 1,25‐dihydroxyvitamin D3 in primary cultures of human prostatic epithelial cells revealed by cDNA microarray analysis. J. Steroid Biochem Mol. Biol 2004;92:131–141. PMID:15555907>

      Calcitriol also directly up-regulates glutathione reductase and increases glutathione levels.

      Jain SK, et alo. Vitamin D upregulates glutamate cysteine ligase and glutathione reductase, and GSH formation, and decreases ROS and MCP-1 and IL-8 secretion in high-glucose exposed U937 monocytes. Biochem Biophys Res Commun. 2013 Jul 19;437(1):7-11. doi: 10.1016/j.bbrc.2013.06.004. Jain SK, 2013

      Also, supplemental vitamin D significantly reduces oxidative stress in humans.

      Nikooyeh B, et al. Daily intake of vitamin D- or calcium-vitamin D-fortified Persian yogurt drink (doogh) attenuates diabetes-induced oxidative stress: evidence for antioxidative properties of vitamin D.J Hum Nutr Diet. 2013 Jul 5. doi: 10.1111/jhn.12142. Nikooyeh B, 2014

      Asemi Z, et al. Vitamin D supplementation affects serum high-sensitivity C-reactive protein, insulin resistance, and biomarkers of oxidative stress in pregnant women. J Nutr. 2013 Sep;143(9):1432-8. doi: 10.3945/jn.113.177550. Asemi Z, 2013

      Thus the vitamin D theory of ASD (vitamin D deficiency being the environmental risk factor for this highly heritable disorder) is consistent with the authors work. Three recent studies, using community controls, have found 25(OH)D levels are significantly lower in children with ASD. Two of the studies below (Mostafa et al and Gong et al) also found ASD severity, as rated on standard ASD rating scales, is inversely correlated with 25(OH)D levels. Mostafa et al found an R value of -.86 for the association of serum 25(OH)D with ASD severity.

      Gong ZL, Luo CM, Wang L, Shen L, Wei F, Tong RJ, Liu Y. Serum 25-hydroxyvitamin D levels in Chinese children with autism spectrum disorders. Neuroreport. 2013 Oct 1. Gong ZL, 2014

      Meguid NA, Hashish AF, Anwar M, Sidhom G. Reduced serum levels of 25-hydroxy and 1,25-dihydroxy vitamin D in Egyptian children with autism. J Altern Complement Med. 2010 Jun;16(6):641-5. Meguid NA, 2010

      Mostafa GA, Al-Ayadhi LY.Reduced serum concentrations of 25-hydroxy vitamin D in children with autism: relation to autoimmunity. J Neuroinflammation. 2012 Aug 17;9:201. Mostafa GA, 2012

      There is a plethora of basic science explaining why low gestational or early childhood 25(OH)D levels would adversely effect brain development.

      Eyles DW, Feron F, Cui X, Kesby JP, Harms LH, Ko P, McGrath JJ, Burne TH. Developmental vitamin D deficiency causes abnormal brain development. Psychoneuroendocrinology. 2009 Dec;34 Suppl 1:S247-57. doi: 10.1016/j.psyneuen.2009.04.015. Epub . Review. Eyles DW, 2009

      DeLuca GC, Kimball SM, Kolasinski J, Ramagopalan SV, Ebers GC. Review: the role of vitamin D in nervous system health and disease. Neuropathol Appl Neurobiol. 2013 Aug;39(5):458-84. doi: 10.1111/nan.12020. DeLuca GC, 2013

      Eyles DW, Burne TH, McGrath JJ. Vitamin D, effects on brain development, adult brain function and the links between low levels of vitamin D and neuropsychiatric disease. Front Neuroendocrinol. 2013 Jan;34(1):47-64. doi: 10.1016/j.yfrne.2012.07.001. Epub 2012 Jul 11. Review. Eyles DW, 2013

      Furthermore, the vitamin D theory of autism explains most of the epidemiological facts of ASD.

      Cannell JJ. On the aetiology of autism. Acta Paediatr. 2010 Aug;99(8):1128-30. Cannell JJ, 2010

      Cannell JJ. Autism and vitamin D. Med Hypotheses. 2008;70(4):750-9. Cannell JJ, 2008

      70% of American toddlers do not take the American Pediatric Association's


      This comment, imported by Hypothesis from PubMed Commons, is licensed under CC BY.

    1. On 2014 Jan 29, Peter Beerli commented:

      Inheritance patterns in diploid and triploid water frog hybrids (Pelophylax esculentus) – a comment on Pruvost et al.

      Jörg Plötner<sup>1,</sup> Gaston-Denis Guex<sup>2,</sup> Peter Beerli<sup>3,</sup> and Thomas Uzzell<sup>4</sup>

      (Addresses at the end)

      Pruvost et al. (2013) described the gamete production and ploidy of water frogs from five populations in Germany, Poland, and Slovakia. Two populations were composed of P. lessonae (genotype LL), P. ridibundus (RR) and their hybridogenetic hybrid P. esculentus (LR, LLR, RRL) whereas three populations consisted of only diploid LR individuals and triploids (LLR, RRL). Based on crossing experiments involving 64 P. esculentus and the analysis of microsatellites, the authors found that diploid males (genotype LR) produced haploid gametes with a ridibundus (R) genome whereas LR females usually produced diploid eggs containing both parental genomes (LR gametes). Moreover, most of the triploid individuals transmitted to their gametes the genome that was present in two copies; i.e. the L genome was inherited from LLR triploids and the R genome from RRL triploids. Their findings confirm the principal inheritance patterns of P. esculentus, which have been known for more than three decades (e.g. Uzzell et al. 1975; Günther et al. 1979; Uzzell et al. 1980; Vinogradov et al. 1990). Transmission of two L genomes by LLR males, which was observed in the Slovakian population Šajdíkove (Mikulíček and Kotlík 2001, Pruvost et al. 2013), can be considered a rare exception. It is not certain, however, that all LLR males of this population produce only LL sperm (nine of 14 LLR males transmitted only LL gametes, but five such males produced no progeny) nor is it certain that LR males in this population transmit only the R genome (only eight F1 individuals from two crosses involving a single male could be genotyped). That no P. lessonae individuals were found in a sample of 169 individuals from this population (Mikulíček and Kotlík 2001; Provost et al. 2013) suggests that the LR individuals in this population originate from LR x LLR and/or LR x LR crosses; as mentioned by Pruvost et al., both LLR males and occasionally LR males and females are able to produce L gametes (Binkert et al. 1982; Günther 1983). Only a few crosses in which either the diploid or the triploid parent produced L gametes would be sufficient for the persistence of such all-hybrid populations; in a relatively large Polish esculentus population comprising 300-400 females, for example, less than 1% of the eggs laid transformed to tadpoles (Berger 1988). Thus, even a high number of artificial crossing experiments does not guarantee that rare inheritance patterns, which may be critical to population persistence, are discovered. Based on the 10 genetic markers that they used, Pruvost et al. suggested that the two L genomes transmitted by LLR males from Šajdíkove are identical. Identity of markers does not, however, necessarily mean identity of genomes. Mikulíček and Kotlík (2001) investigated one LLR male from this population electrophoretically and found two distinct lessonae-specific alleles at the ldh-1 locus, which is evidence that the L genomes of this male differed from each other. On the other hand, it is not certain that in all cases “triploid hybrids recombine the genome they have in double dose” (Pruvost et al. 2013), although evidence for recombination between the double genomes in triploids comes from enzyme loci (Günther et al. 1979) and microsatellites (Christiansen and Reyer 2009). Because the few polymorphic markers available until recently do not allow distinguishing between the double genomes in many triploids, it cannot be said whether recombination between the two L or the two R genomes has taken place in such individuals. Biases in sex ratio of the progeny from crosses in which triploid individuals were involved (Günther et al. 1979; Berger and Günther 1988; 1991-1992), putative recombination between the L and the R genome in triploids (e.g. Plötner and Klinkhardt 1992; Christiansen et al. 2005), the occasional production of LL and LR eggs by some triploid (LLR) females (Christiansen et al. 2005; Christiansen 2009), the rare production of R or LL sperm by LLR males (Brychta and Tunner 1994; Christiansen et al. 2005), incomplete elimination of the R genome in some spermatogonia (Vinogradov et al. 1990), and chromosomal aberrations in meiosis of triploid males (Günther 1975) reflect the huge complexity of inheritance in triploid P. esculentus. P. esculentus may represent a useful model for hybrid speciation. It is not surprising, however, that hybrid forms in early stages of speciation exhibit a plethora of genetic disturbances and irregularities (Dobzhansky-Muller incompatibilities; e.g. reviewed by Landry et al. 2007; Maheshwari and Barbasch 2011) especially in gametogenesis and embryonic development expressed as fertility disorders in adults (Günther 1973), abnormal cleavage of eggs, malformations in larvae, and high mortality during larval development (e. g. Christiansen et al. 2005; reviewed by Ogielska 2009). The observed differences in the inheritance patterns of triploid water frog hybrids may thus be interpreted as a simple result of selection-mediated interactions between specific genomic features and spatial-environmental conditions of different evolutionary lineages representing a monophyletic group; at present there is no character-based evidence that triploid frogs are of polyphyletic origin as proposed by Pruvost et al. More genomic data are required to answer this and many other questions concerning the genetics and evolutionary history of western Palearctic water frogs.

      List of references can be downloaded from here

      http://www.peterbeerli.com/papers/misc/Reply_Pruvost_et_al_2013.pdf

      1 Museum für Naturkunde, Leibniz-Institut für Evolutions- und Biodiversitätsforschung, Invalidenstraße 43, 10115 Berlin. Germany. Email: joerg.ploetner@mfn-berlin.de

      2 Field Station Dätwil, 8452 Adlikon, Hauptstrasse 2, Switzerland

      3 Florida State University, Department of Scientific Computing, Tallahassee, FL 32306-4120, USA

      4 Academy of Natural Sciences, Laboratory for Molecular Systematics and Ecology, 1900 B. F. Parkway, PA 19103 Philadelphia, USA


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    1. On 2013 Oct 31, John Cannell commented:

      I wonder if the authors are aware that the genes for the antioxidants superoxide dismutase and thioredoxin reductase are directly up-regulated by the secosteroid 1,25 di-hydroxy vitamin D3 (calcitriol). I believe both genes also harbor a vitamin D response element.

      Peehl DM, Shinghal R, Nonn L, Seto E, Krishnan AV, Brooks JD, Feldman D. Molecular activity of 1,25‐dihydroxyvitamin D3 in primary cultures of human prostatic epithelial cells revealed by cDNA microarray analysis. J. Steroid Biochem Mol. Biol 2004;92:131–141. PMID:15555907>

      Calcitriol also directly up-regulates glutathione reductase and increases glutathione levels.

      Jain SK, et alo. Vitamin D upregulates glutamate cysteine ligase and glutathione reductase, and GSH formation, and decreases ROS and MCP-1 and IL-8 secretion in high-glucose exposed U937 monocytes. Biochem Biophys Res Commun. 2013 Jul 19;437(1):7-11. doi: 10.1016/j.bbrc.2013.06.004. Jain SK, 2013

      Also, supplemental vitamin D significantly reduces oxidative stress in humans.

      Nikooyeh B, et al. Daily intake of vitamin D- or calcium-vitamin D-fortified Persian yogurt drink (doogh) attenuates diabetes-induced oxidative stress: evidence for antioxidative properties of vitamin D.J Hum Nutr Diet. 2013 Jul 5. doi: 10.1111/jhn.12142. Nikooyeh B, 2014

      Asemi Z, et al. Vitamin D supplementation affects serum high-sensitivity C-reactive protein, insulin resistance, and biomarkers of oxidative stress in pregnant women. J Nutr. 2013 Sep;143(9):1432-8. doi: 10.3945/jn.113.177550. Asemi Z, 2013

      Thus the vitamin D theory of ASD (vitamin D deficiency being the environmental risk factor for this highly heritable disorder) is consistent with the authors work. Three recent studies, using community controls, have found 25(OH)D levels are significantly lower in children with ASD. Two of the studies below (Mostafa et al and Gong et al) also found ASD severity, as rated on standard ASD rating scales, is inversely correlated with 25(OH)D levels. Mostafa et al found an R value of -.86 for the association of serum 25(OH)D with ASD severity.

      Gong ZL, Luo CM, Wang L, Shen L, Wei F, Tong RJ, Liu Y. Serum 25-hydroxyvitamin D levels in Chinese children with autism spectrum disorders. Neuroreport. 2013 Oct 1. Gong ZL, 2014

      Meguid NA, Hashish AF, Anwar M, Sidhom G. Reduced serum levels of 25-hydroxy and 1,25-dihydroxy vitamin D in Egyptian children with autism. J Altern Complement Med. 2010 Jun;16(6):641-5. Meguid NA, 2010

      Mostafa GA, Al-Ayadhi LY.Reduced serum concentrations of 25-hydroxy vitamin D in children with autism: relation to autoimmunity. J Neuroinflammation. 2012 Aug 17;9:201. Mostafa GA, 2012

      There is a plethora of basic science explaining why low gestational or early childhood 25(OH)D levels would adversely effect brain development.

      Eyles DW, Feron F, Cui X, Kesby JP, Harms LH, Ko P, McGrath JJ, Burne TH. Developmental vitamin D deficiency causes abnormal brain development. Psychoneuroendocrinology. 2009 Dec;34 Suppl 1:S247-57. doi: 10.1016/j.psyneuen.2009.04.015. Epub . Review. Eyles DW, 2009

      DeLuca GC, Kimball SM, Kolasinski J, Ramagopalan SV, Ebers GC. Review: the role of vitamin D in nervous system health and disease. Neuropathol Appl Neurobiol. 2013 Aug;39(5):458-84. doi: 10.1111/nan.12020. DeLuca GC, 2013

      Eyles DW, Burne TH, McGrath JJ. Vitamin D, effects on brain development, adult brain function and the links between low levels of vitamin D and neuropsychiatric disease. Front Neuroendocrinol. 2013 Jan;34(1):47-64. doi: 10.1016/j.yfrne.2012.07.001. Epub 2012 Jul 11. Review. Eyles DW, 2013

      Furthermore, the vitamin D theory of autism explains most of the epidemiological facts of ASD.

      Cannell JJ. On the aetiology of autism. Acta Paediatr. 2010 Aug;99(8):1128-30. Cannell JJ, 2010

      Cannell JJ. Autism and vitamin D. Med Hypotheses. 2008;70(4):750-9. Cannell JJ, 2008

      70% of American toddlers do not take the American Pediatric Association's recommended vitamin D supplement of 400 IU/day and few toddle


      This comment, imported by Hypothesis from PubMed Commons, is licensed under CC BY.

    1. On 2015 Jul 27, Simon Young commented:

      While the aims of this article are good it has some problems: 1. The Abstract states “Because serotonin levels in the brain are dependent on the availability of the food-derived precursor tryptophan, foods such as chicken, soyabeans, cereals, tuna, nuts and bananas may serve as an alternative to improve mood and cognition”. However, as the authors state correctly in the Discussion “contrary to popular belief, most common foods high in Trp do not increase the plasma TRP:LNAA ratio enough to exert any positive effects on mood/cognition, because they also contain large amounts of other LNAA.” Ingestion of chicken, soyabeans, cereals, tuna and nuts would certainly not, as suggested in the Abstract, improve mood and cognition due to increased brain serotonin synthesis, as they would not increase brain synthesis. Why bananas are included in the list is not clear. Bananas contain high serotonin levels Feldman JM, 1985, but as mentioned in the article serotonin in food does not cross the blood-brain barrier. Apparently the high level of serotonin in bananas has resulted in the popular belief that bananas must contain high tryptophan levels. A search in Google using the key words banana and tryptophan finds numerous sites stating that bananas have high levels of serotonin. However, the United States Department of Agriculture Nutrient Database http://ndb.nal.usda.gov/ndb/foods gives the tryptophan content of bananas as 9mg per 100g, a very low level that would contribute a negligible fraction of the normal daily intake of tryptophan even if several bananas were eaten. 2. Another problem with the article is that the authors ignore that fact that food may act as a cognitive enhancer through mechanisms other than alterations in tryptophan and serotonin. The acute improvement in memory after a meal is well known and is, in whole or in part, associated with an increase in blood glucose, which may improve cognition through an increase in acetylcholine, but not serotonin Smith MA, 2011. All macronutrients may have beneficial effects on cognition as protein, carbohydrate and fat meals all improve performance on different cognitive tests in humans Kaplan RJ, 2001. Thus, for example, the enhancement of memory due to a high carbohydrate diet mentioned in relation to citation 111 in the article may have nothing to do with changes in brain serotonin synthesis. 3. Hulsken et al discuss the effect of tryptophan supplementation using alpha-lactalbumin, a protein with high levels of tryptophan, and egg protein hydrolysate. They also mention some studies using pure tryptophan, but omit mention of many articles in which mood and/or cognition were measured after administration of pure tryptophan. The first such study was published more than 50 years ago SMITH B, 1962. Many of the missing studies on healthy participants are cited in a recent review Silber BY, 2010. Numerous studies in which tryptophan was given to vulnerable subjects were not cited by Hulsken et al. A Cochrane Database Systematic Review concluded that the available evidence suggests that tryptophan is better than placebo at alleviating depression Shaw K, 2002. Tryptophan has also been used in other conditions. For example, while the article mentions the beneficial effects of a high carbohydrate diet and alpha-lactalbumin on premenstrual mood it does not mention a clinical trial in which tryptophan (6g per day) was better than placebo in treating premenstrual dysphoria Steinberg S, 1999. Given the high dose of tryptophan given, studies such as this clinical trial need to be taken into account when assessing the authors’ suggestion that “Unphysiological high increases in brain Trp lead to negative effects on mood in both healthy and vulnerable subjects”.


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    1. On 2013 Oct 31, John Cannell commented:

      I wonder if the authors are aware that the genes for the antioxidants superoxide dismutase and thioredoxin reductase are directly up-regulated by the secosteroid 1,25 di-hydroxy vitamin D3 (calcitriol). I believe both genes also harbor a vitamin D response element.

      Peehl DM, Shinghal R, Nonn L, Seto E, Krishnan AV, Brooks JD, Feldman D. Molecular activity of 1,25‐dihydroxyvitamin D3 in primary cultures of human prostatic epithelial cells revealed by cDNA microarray analysis. J. Steroid Biochem Mol. Biol 2004;92:131–141. Peehl DM, 2004

      Calcitriol also directly up-regulates glutathione reductase and increases glutathione levels.

      Jain SK, Micinski D.Vitamin D upregulates glutamate cysteine ligase and glutathione reductase, and GSH formation, and decreases ROS and MCP-1 and IL-8 secretion in high-glucose exposed U937 monocytes. Biochem Biophys Res Commun. 2013 Jul 19;437(1):7-11. doi: 10.1016/j.bbrc.2013.06.004. Jain SK, 2013

      Also, supplemental vitamin D significantly reduces oxidative stress in humans.

      Nikooyeh B, et al. Daily intake of vitamin D- or calcium-vitamin D-fortified Persian yogurt drink (doogh) attenuates diabetes-induced oxidative stress: evidence for antioxidative properties of vitamin D.J Hum Nutr Diet. 2013 Jul 5. doi: 10.1111/jhn.12142. Nikooyeh B, 2014

      Asemi Z, et al. Vitamin D supplementation affects serum high-sensitivity C-reactive protein, insulin resistance, and biomarkers of oxidative stress in pregnant women. J Nutr. 2013 Sep;143(9):1432-8. doi: 10.3945/jn.113.177550. Asemi Z, 2013

      Thus the vitamin D theory of ASD (vitamin D deficiency being the environmental risk factor for this highly heritable disorder) is consistent with the authors work. Three recent studies, using community controls, have found 25(OH)D levels are significantly lower in children with ASD. Two of the studies below (Mostafa et al and Gong et al) also found ASD severity, as rated on standard ASD rating scales, is inversely correlated with 25(OH)D levels. Mostafa et al found an R value of -.86 for the association of serum 25(OH)D with ASD severity.

      Gong ZL, Luo CM, Wang L, Shen L, Wei F, Tong RJ, Liu Y. Serum 25-hydroxyvitamin D levels in Chinese children with autism spectrum disorders. Neuroreport. 2013 Oct 1. Gong ZL, 2014

      Meguid NA, Hashish AF, Anwar M, Sidhom G. Reduced serum levels of 25-hydroxy and 1,25-dihydroxy vitamin D in Egyptian children with autism. J Altern Complement Med. 2010 Jun;16(6):641-5. Meguid NA, 2010

      Mostafa GA, Al-Ayadhi LY.Reduced serum concentrations of 25-hydroxy vitamin D in children with autism: relation to autoimmunity. J Neuroinflammation. 2012 Aug 17;9:201. Mostafa GA, 2012

      There is a plethora of basic science explaining why low gestational or early childhood 25(OH)D levels would adversely effect brain development.

      Eyles DW, Feron F, Cui X, Kesby JP, Harms LH, Ko P, McGrath JJ, Burne TH. Developmental vitamin D deficiency causes abnormal brain development. Psychoneuroendocrinology. 2009 Dec;34 Suppl 1:S247-57. doi: 10.1016/j.psyneuen.2009.04.015. Epub . Review. Eyles DW, 2009

      DeLuca GC, Kimball SM, Kolasinski J, Ramagopalan SV, Ebers GC. Review: the role of vitamin D in nervous system health and disease. Neuropathol Appl Neurobiol. 2013 Aug;39(5):458-84. doi: 10.1111/nan.12020. DeLuca GC, 2013

      Eyles DW, Burne TH, McGrath JJ. Vitamin D, effects on brain development, adult brain function and the links between low levels of vitamin D and neuropsychiatric disease. Front Neuroendocrinol. 2013 Jan;34(1):47-64. doi: 10.1016/j.yfrne.2012.07.001. Epub 2012 Jul 11. Review. Eyles DW, 2013

      Furthermore, the vitamin D theory of autism explains most of the epidemiological facts of ASD.

      Cannell JJ. On the aetiology of autism. Acta Paediatr. 2010 Aug;99(8):1128-30. Cannell JJ, 2010

      Cannell JJ. Autism and vitamin D. Med Hypotheses. 2008;70(4):750-9. Cannell JJ, 2008

      70% of American toddlers do not take the American Pediatric Association's recommended vitamin D supplement of 400 IU/day and few to


      This comment, imported by Hypothesis from PubMed Commons, is licensed under CC BY.

    1. On 2014 Jan 09, B Martini commented:

      In their recent article (1), The Brugada brothers reported that “Martini et al had published a series of patients with idiopathic ventricular fibrillation and, upon retrospective analysis, one had an electrocardiogram (ECG) with similar characteristics. However, in contrast to the report in JACC, their patients had structural heart disease with no evidence for a hereditary disorder”. This statement is again a personal interpretation of the contribution of Italian and Japanese Colleagues who published the syndrome 5 years before the Brugada article (1-4). It is not true that only 1 patient had the discussed ecg, and that there was no evidence of hereditary disorder. We have recently re-discussed and documented all the true history (5). Moreover also the “recently discovered” depolarization theory was fully proposed and demonstrated in those early articles. We wrote and still believe that all these patients have some underlying heart disease, and that there is not a distinguished functional syndrome, different from an organic one.<br> I personally have an high respect for the Brugada contribution to the syndrome, but the repeated authorital attempts to erase the true history of the discover, do not further enhance the importance of their contribution.

      1. Brugada P,Brugada J, Roy D. Brugada syndrome 1992–2012: 20 years of scientific excitement, and more. Eur Heart J 2013 in press

      2. Nava A, Canciani B, Schiavinato, M. L, Martini B: La repolarisation precoce dans le precordiales droites: trouble de la conduction intraventriculaire droite? Correlationse l'electrocardiographie- vectorcardiographie avec l'electro-physiologie. Mises a Jour Cardiologiques 1988;17:157-159

      3. Martini B, Nava, A, Thiene, G, et al: Ventricular fibrillation without apparent heart disease: description Of six cases. Am. Heart J. 1989; 118: 1203-1209

      4. Aihara, N, Ohe, T, Kamakura S, et al: Clinical and electro physiologic characteristics of idiopathic ventricular fibrillation. Shinzo 1990;22 (suppl. 2). 80-83

      5. Martini B, Wu J. Nava A. A rare lethal syndrome in search of its identity: Sudden death, right bundle branch block and ST segment elevation. In Wu J, Wu J Editors: Sudden Death. Nova Biomedical New York, pp.1-39


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    1. On 2013 Nov 16, M Mangan commented:

      This editorial provides an interesting explanation for why this journal chose to publish an article that generated a negative result, which was an attempt to replicate previous work. It provides an interesting discussion of the philosophy of replicating work and of publishing replications, which not all journals will elect to do, apparently. The replication article they published this one: Dickinson B, 2013.

      The new article described the inability to replicate the claims from this prior article: Zhang L, 2012.


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    1. On 2014 Jan 08, Daniele Focosi commented:

      Anelloviruses and immune competence.

      We read with interest the recent article by De Vlaminck et al showing marked human plasma virome compositional dynamics in 96 heart and lung transplant recipients (De Vlaminck et al., 2013). Since most fluctuations in plasma virome were due to expansions and contractions of members of the family Anelloviridae, specifically torquetenovirus (TTV) species, these authors suggested that levels and fluctuations of these viruses in plasma might serve as indicators of immune system functionality These findings and hypotheses are not unexpected to us. In 2008, using a quantitative real-time PCR assay targeting conserved TTV genome regions, we reported very similar dynamics in myeloma and lymphoma patients receiving high-dose chemotherapy supported by autologous hematopoietic stem cells transplantation. Here we found a clear correlation between peaks of TTV viremia and expansion of senescent CD8+CD57+ T lymphocytes, which are known to soothe immune responses and are associated with CMV infections (Maggi et al., 2008 ). We then demonstrated that the time needed for TTV viremia to return to baseline levels after the peak that inexorably followed conditioning predicts how long is the time for recovery of the immune system function, and hence we proposed TTV viremia as a surrogate marker of functional immune competence (Focosi et al., 2010 ). We finally confirmed the preeminent role of hematopoietic cells in controlling plasma TTV viremia in fully myeloablated recipients of haploidentical stem cell transplantations (Maggi et al., 2010). We also found TTV viremia kinetics similar to those reported by De Vlaminck et al in 114 kidney and pancreas transplant recipients followed-up for 1 year (Focosi et al., 2013; manuscript in preparation). CMV positive (donor or recipient) transplant cases were treated with anti-CMV prophylaxis, valganciclovir. Here again we found that the hematopoietic cells played a pivotal role in regulating plasma TTV viremia, and demonstrated a massive drop of TTV viremia in the immediate days after lympho-depleting induction regimens. TTV viremia rebounded after day 7, peaked at month 3-6 to decline thereafter during maintenance immunosuppression. Interestingly, although statistical limitations did not allow to demonstrate a correlation between TTV viremia levels and graft rejections, we found a positive association with CMV reactivations. In their paper, De Vlaminck et al. used shotgun sequencing to determine human virome composition in cell-free plasma DNA and concluded that this data offer a potential application to monitor the effect of pharmacological treatment and predict immunocompetence. Shotgun sequencing is a powerful technique but is time-consuming, expensive, and poorly apt for routine diagnostics. In our papers we have instead shown that a fast and cheap quantitative, TTV-universal real-time PCR can provide an estimate of immunocompetence and be a simple and practical tool for tailor-made maintenance immune suppression. In conclusion, although we should be aware that the factors that can impact on TTV viremia levels and complexity are numerous (including polymorphisms in innate immunity genes and superinfections with different TTV genotypes) and largely uninvestigated, we totally agree with De Vlaminck et al that replication of TTV in humans is a promising marker to monitor functional activity of immune system. We declare that we don’t have any conflict of interest related to this comment.

      Dr. Fabrizio Maggi, MD<sup>1,2,*,#</sup> Dr. Daniele Focosi, MD<sup>3,*</sup> Prof. Mauro Bendinelli, MD, PhD<sup>3</sup> Prof. Ugo Boggi, MD, PhD<sup>3</sup> Prof. Mauro Pistello, PhD<sup>3</sup>

      <sup>1</sup> Virology Section, Pisa University Hospital, Pisa, Italy <sup>2</sup> Chair, Anelloviridae Study Group, International Committee on Taxonomy of Viruses <sup>3</sup> Department of Translational Research, University of Pisa, Pisa, Italy

      <sup>*</sup> both authors contributed equally to this manuscript. <sup>#</sup> corresponding author : Virology Section, Pisa University Hospital, via Paradisa 2, 56124 Pisa, Italy. E-mail: fabrizio.maggi63@gmail.com. Phone : +39 050 997055

      References : 1. De Vlaminck, I., Khush, K.K., Strehl, C., Kohli, B., Luikart, H., Neff, N.F., Okamoto, J., Snyder, T.M., Cornfield, D.N., Nicolls, M.R., et al. (2013). Temporal response of the human virome to immunosuppression and antiviral therapy. Cell 155, 1178-1187. 2. Focosi, D., Macera, L., Santi, M., Vistoli, F., Pistello, M., Scatena, F., Maggi, F., and Boggi, U. (2013). TTV kinetics as a novel marker of functional immune deficiency. Paper presented at: European Society for Organ Transplantation (ESOT) (Vienna). 3. Focosi, D., Maggi, F., Albani, M.M., L, Ricci, V.G., S, Di Beo, S.G., M, Antonelli, G., Bendinelli, M.P., M, and Ceccherini-Nelli, L.P., M (2010 ). Torquetenovirus viremia kinetics after autologous stem cell transplantation are predictable and may serve as a surrogate marker of functional immune reconstitution. J Clin Virol 47, 189-192. 4. Maggi, F., Focosi, D., Albani, M., Lanini, L., Vatteroni, M.L., Petrini, M., Ceccherini-Nelli, L., Pistello, M., and Bendinelli, M. (2010). Role of hematopoietic cells in the maintenance of chronic human torquetenovirus plasma viremia. J Virol 84, 6891-6893. 5. Maggi, F., Focosi, D., Ricci, V., Paumgardhen, E., Ghimenti, M., Bendinelli, M., Ceccherini-Nelli, L., Papineschi, F., and Petrini, M. (2008 ). Changes in CD8+57+ T lymphocyte expansions after autologous hematopoietic stem cell transplantation correlate with changes in torquetenovirus viremia. Transplantation 85, 1867-1868.


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    1. On 2014 Mar 01, Karen Woolley commented:

      Professional medical writers: More haste, less waste

      To paraphrase the paraphrased opening line of the much-needed paper by Glasziou et al.,<sup>1</sup>

      “The problem [with researchers who need, but don’t use, professional medical writing support] is long-standing, worldwide, pervasive, potentially serious, and not at all apparent to many researchers, peer-reviewers, journal editors, sponsors, and journalists.”

      We, the members of the Global Alliance of Publication Professionals, congratulate Glasziou and his colleagues for highlighting the need for better reporting to help reduce research waste. We are surprised, however, that the authors did not explicitly recommend the use of professional medical writers (ie, those writers who are NOT ghostwriters).<sup>2-5</sup> If researchers used professional medical writers with more haste, we believe ¬─ and evidence suggests ─ there would be less research waste.

      We readily acknowledge that some researchers don’t necessarily require professional writers. These researchers: - Write well - Are given adequate time to write - Follow journal guidelines - Are aware of, and adhere to, best-practice reporting guidelines - Keep up-to-date on regulations affecting medical writing practices - Expertly project manage themselves and their co-authors - Ensure disclosures are complete, etc...

      Based on our collective experience of 100+ years of working with researchers around the world, however, not all researchers are so well-equipped. They (and the biomedical literature) could benefit greatly from the ethical, legitimate, and valuable support professional medical writers provide.<sup>6</sup> Although evidence on the use of professional medical writers is embryonic, studies have shown that manuscripts with professional medical writing support are more compliant with CONSORT guidelines (especially reporting of harms),<sup>7</sup> accepted more quickly for publication,<sup>8</sup> and less likely to be retracted for misconduct,<sup>9</sup> compared with those without writing support. A recent survey of authors also showed that 84% of authors valued the use of professional medical writers, with 1 in 3 viewing such support as extremely valuable.<sup>10</sup>

      The cost of providing medical writing support has been calculated and is certainly affordable.<sup>6</sup> Glasziou and his colleagues are correct that “a small proportion of core grant funding” should be dedicated to writing. Who should do this writing though...and, importantly, who has the time and expertise to do it quickly and do it well? A recent systematic review of 27 studies identified lack of time as the main reason researchers don’t write.<sup>11</sup> Professional medical writers have the advantage of being able to provide focused time, in addition to being able to provide the expertise to help authors prepare timely, high-quality reports. Indeed, writers who have passed a psychometrically validated exam to become a Certified Medical Publication Professional (CMPP) have had to prove their knowledge on 150 topics related to ethical and efficient medical writing practices.<sup>12</sup> Results from the Global Publication Survey (manuscript in preparation) will also reveal the extent of knowledge and guidance that professional medical writers provide to authors.

      Like Glasziou et al., we support author training. We doubt, however, that every author who needs training will have the capacity, resources, or inclination to be trained. It can take years to become a great writer and it takes an increasing amount of time to keep abreast of best-practice reporting guidelines and regulations that affect writing. In the same way that professional statisticians help researchers who lack the time or expertise to analyse their data, professional medical writers can help researchers, who lack the time or expertise, to report their data. Today, biomedical research often requires a team effort and, given the need to improve results reporting, we believe (and evidence now suggests) that professional medical writers should be trusted and valued members of these teams. The time to recognise and use professional medical writers is now – those who act with haste should incur less waste.

      Authors and affiliations

      Karen L. Woolley PhD CMPP,a Art Gertel MS,b Cindy Hamilton PharmD,c Adam Jacobs PhD,d Jackie Marchington PhD CMPPe (Global Alliance of Publication Professionals; www.gappteam.org)

      a. Divisional Lead. ProScribe – Envision Pharma Group; Adjunct Professor, University of the Sunshine Coast, Australia. b. VP, Regulatory and Medical Affairs, TFS, Inc.. USA; Senior Research Fellow, CIRS. c. Assistant Clinical Professor, Virginia Commonwealth University School of Pharmacy; Principal, Hamilton House, USA. d. Director, Dianthus Medical Limited, UK. e. Director of Scientific Operations, Caudex Medical, UK.

      Disclosures

      All authors declare that: (1) all authors have or do provide ethical medical writing services to academic, biotechnology, or pharmaceutical clients; (2) KW’s husband is also an employee of ProScribe – Envision Pharma Group; all other authors’ spouses, partners, or children have no financial relationships that may be relevant to the submitted work; and (3) all authors are active in national and international not-for-profit associations that encourage ethical medical writing practices. No external sponsors were involved in this study and no external funding was used.

      References

      1. Glasziou P, Altman DG, Bossuyt P et al. Reducing waste from incomplete or unusable reports of biomedical research. Lancet 2014; 383:267-276.
      2. Woolley KL. Goodbye Ghostwriters!: How to work ethically and efficiently with professional medical writers. Chest 2006;130:921-923.
      3. Woolley KL, Gertel A, Hamilton C, Snyder G, Jacobs A (GAPP). Don’t Be a Fool – Don’t Use Fool’s Gold. Am J Med 2012; 125:e21–e22.
      4. Gøtzsche PC, Kassirer JP, Woolley KL, et al., What should be done to tackle ghostwriting in the medical literature? PLoS Med. 2009;6(2):e1000023.
      5. Hamilton C, (GAPP). Differential diagnosis: Distinguishing between ghostwriting and professional medical writing in biomedical journals. JAMA Intern Med 2013;173(22):2091-2092.<br>
      6. Woolley KL, Gertel A, Hamilton C, Jacobs A, Snyder G (GAPP). Poor compliance with reporting research results – we know it’s a problem…how do we fix it? Curr Med Res Opin 2012;28:1857-1860.
      7. Jacobs A. Adherence to the CONSORT guideline in papers written by professional medical writers. Write Stuff. 2010;19:196-200.
      8. Bailey M. Science editing and its effect on manuscript acceptance time. AMWA Journal. 2011;26(4):147-152.
      9. Woolley KL, Lew RA, Stretton S, et al. Lack of involvement of medical writers and the pharmaceutical industry in publications retracted for misconduct: a systematic, controlled, retrospective study. Curr Med Res Opin. 2011;27:1175-1182.
      10. Marchington J, Burd G, Kidd C. Author attitudes to professional medical writing support. Curr Med Res Opin 2013;29:S17.
      11. Scherer RW, Ugarte-Gil C. Authors’ reasons for unpublished research presented at biomedical conferences: A systematic review. http://www.peerreviewcongress.org/abstracts_2013.html#1 Accessed 27 February 2014.
      12. Woolley KL. Coincidence? Publication expertise boosts publication output. J Surg Educ 2014 71:7.


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    1. On 2014 Mar 08, David Reardon commented:

      Findings in Doubt Due to Failure to Account for Interrelationships Between Breast Cancer, Smoking & Abortion

      Like similar studies exploring the association between smoking and breast cancer, this study by Kawai et al<sup>1</sup> unfortunately fails to explore a very important and intertwined risk factor: abortion history.

      Numerous studies have shown that young women report starting or smoking more in order to cope with feelings associated with past abortions.

      For example, a very recent longitudinal study published in the Journal of Adolescent Health revealed young women with a history of abortion had adjusted higher 4.1 times higher risk of smoking (CI, 1.9-8.8) and 4.5 times higher risk of nicotine dependence (OR 4.5; CI, 2.1-9.6).<sup>2</sup> Similar results are reported by others.<sup>3</sup>(4) In one post-abortion follow-up study, nearly one fourth of the women specifically described that they used smoking to "deal with" feelings related to their abortions.<sup>5</sup>

      The importance of examining the three-way associations between smoking, abortion history and breast cancer is underscored by the controversy regarding statistical associations between abortion history and breast cancer. That controversy was recently reignited by meta-analysis of 36 studies conducted in China which found a significant association between abortion and breast cancer, including a dose effect. <sup>6</sup>

      To my knowledge, while plenty of researchers have explored the associations between smoking and breast cancer and abortion and breast cancer, none have yet to look at both risk factors in the same study. This is a serious problem, especially if one of these factors is actually just a proxy for the other.

      Clearly, whether smoking and abortion arise from common risk factors or from causal interactions, the fact that they are associated in any fashion raises important research questions:

      • Is the elevated risk of breast cancer associated with abortion due to behavioral changes (such as increased smoking) with the biological mechanism behind the elevated breast cancer rate due to smoking? or

      • Is the apparent elevated risk of breast cancer associated with smoking really due to increased exposure to abortion in the population of smoking women and it is abortion (perhaps due to disruption of early pregnancy hormone cycles) contributing a biological mechanism that accounts for all or part of the observed increased cancer risk associated with smoking?, or

      • Is there a combination of incidental associations and/or overlapping biological risk factors?

      In my view, it clear that new analyses must be done which, when looking at the abortion history variable, segregate smokers from non-smokers. This would show if abortion has an independent effect. Similarly, when looking at the smoking history, the analyses should include segregation of smokers and non-smokers relative to history of 0, 1, or 2+ abortions.

      It is my hope that Dr. Kawai's team, and others with similar data sets, will begin to explore these interactions.

      References

      (1) Kawai M, Malone KE, Tang MT, Li CI. Active smoking and the risk of estrogen receptor-positive and triple-negative breast cancer among women ages 20 to 44 years. Cancer. 2014 Feb 10. doi: 10.1002/cncr.28402.

      (2) Olsson CA, Horwill E, Moore E, Eisenberg ME, Venn A, O'Loughlin C, Patton GC. Social and Emotional Adjustment Following Early Pregnancy in Young Australian Women: A Comparison of Those Who Terminate, Miscarry, or Complete Pregnancy. J Adolesc Health. 2014 Jan 15. pii: S1054-139X(13)00738-6. doi: 10.1016/j.jadohealth.2013.10.203.

      (3) Pedersen, W. Childbirth, abortion and subsequent substance use in young women: a population-based longitudinal study. Addiction. 2007 102: 1971–1978.

      (4) L Henriet, M Kaminski. Impact of induced abortions on subsequent pregnancy outcome: the 1995 French national perinatal pregnancy survey, Br J Obstet Gynaecol 2001 108:1036-1042.

      (5) Major B, Richards C, Cooper ML et al. Personal resilience, cognitive appraisals, and coping: An integrative model of adjustment to abortion. J Person Soc Psychol, 1998; 74: 735-752.

      (6) Huang Y1, Zhang X, Li W, Song F, Dai H, Wang J, Gao Y, Liu X, Chen C, Yan Y, Wang Y, Chen K. A meta-analysis of the association between induced abortion and breast cancer risk among Chinese females. Cancer Causes Control. 2014 Feb;25(2):227-36. doi: 10.1007/s10552-013-0325-7. Epub 2013 Nov 24.


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    1. On 2014 Mar 24, Karen Woolley commented:

      FINALLY...more attention is being paid to PRACTICAL issues about data sharing!

      Well done to Wilhelm, Oster, and Shoulson for reminding us that it takes resources (financial and nonfinancial) to share data. We should also remember that it takes resources (financial and nonfinancial) to publish data. This issue seems to have been lost in the hand-wringing taking place over low and slow publication rates.

      A robust systematic review, presented at the 2013 Peer Review Congress (organised by JAMA and the BMJ) identified “lack of time” as the main reason why researchers don’t write up manuscripts.<sup>1</sup> Clearly, many researchers need writing support (ie, from legitimate, ethical, highly trained and qualified professional medical writers; NOT ghostwriters). Similar to Wilhelm et al., we outlined the need to consider the cost issue if we want to enhance publication speed and quality.<sup>2</sup> We think our paper struck a chord - it was among the top 5 most downloaded papers from Current Medical Research & Opinion that year.

      Professional medical writers are trained to help make complex data understandable to different target audiences (eg, researchers, regulators, patients) and could, therefore, help address another critical point made by Wilhelm et al., “Standardization costs for data-sharing models include the additional effort required to share, beyond what is required of any high-quality clinical research, because it takes considerably more effort to organize and make data understandable to others.”

      Wilhelm et al. conclude that “Understanding and planning for the costs [for data sharing] at the outset of research can help realize the full potential of data sharing.” The same sentence could apply to publications ie, understanding and planning for the costs of manuscript writing at the outset of research can help realise the full potential of peer-reviewed publications.

      Authors and affiliations Karen L. Woolley PhD CMPP,a Art Gertel MS,b Cindy Hamilton PharmD,c Adam Jacobs PhD,d Jackie Marchington PhD CMPPe (Global Alliance of Publication Professionals; www.gappteam.org) a. Division Lead. ProScribe – Envision Pharma Group; Adjunct Professor, University of the Sunshine Coast, Australia. b. VP, Regulatory and Medical Affairs, TFS, Inc.. USA; Senior Research Fellow, CIRS. c. Assistant Clinical Professor, Virginia Commonwealth University School of Pharmacy; Principal, Hamilton House, USA. d. Director, Dianthus Medical Limited, UK. e. Director of Scientific Operations, Caudex Medical, UK.

      Disclosures All authors declare that: (1) all authors have or do provide ethical medical writing services to academic, biotechnology, or pharmaceutical clients; (2) KW’s husband is also an employee of ProScribe – Envision Pharma Group; all other authors’ spouses, partners, or children have no financial relationships that may be relevant to the submitted work; and (3) all authors are active in national and international not-for-profit associations that encourage ethical medical writing practices. No external sponsors were involved in this study and no external funding was used.

      References 1. Scherer RW, Ugarte-Gil C. Authors’ reasons for unpublished research presented at biomedical conferences: A systematic review. http://www.peerreviewcongress.org/abstracts_2013.html#1 Accessed 27 February 2014. 2. Woolley KL, Gertel A, Hamilton C, Jacobs A, Snyder G (GAPP). Poor compliance with reporting research results – we know it’s a problem…how do we fix it? Curr Med Res Opin 2012;28:1857-1860.


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    1. On 2014 Apr 16, Claudiu Bandea commented:

      What if we have totally missed the true nature of viruses? (Part II)

      (Due to size limitations, this comment was entered as two parts)

      Another way to react to the critical question raised by Wolkowicz and Schaechter (24) is to invoke the notion that viruses are not even living entities, and come up with “Ten reasons to exclude viruses from the tree of life” (26). As discussed in more detail elsewhere (8), many of the reasons presented by David Moreira and Purificación López-García (26) were rationalized within the framework of the misleading conventional paradigms about their nature and evolution, so their scientific validity is compromised. Interestingly, Moreira and López-García were well aware of the problems with the dogma of viruses as virus particles, as they wrote: “Claverie recently proposed a provocative redefinition of the viral identity wherein the true nature of a virus is not the virion (the infective viral particle)” (26). However, they dismissed the entire issue by justifiably arguing that the solution to the problems associated with the dogma of viruses as virus particles as proposed by Claverie, “The virus factory should be considered the actual virus organism when referring to a virus” (4), is nonsensical, as the identity of an organism should rely solely on its components and properties, not those of its environment (i.e. the host cell; for more discussion on this issue see Ref. 9); incidentally, this rationale also questions the ‘virocell concept,’ which was developed by Patrick Forterre as a novel solution to the misleading dogma of viruses as virus particles (11, 27). Moreover, in their response to a flurry of comments prompted by their article (see the published correspondence associated with Ref. 26 in the journal Nature Rev. Microbiol.), Moreira and López-García explained the reasons for much of the scientific confusion afflicting the current paradigms on the evolution of viruses: “We realize that much of this confusion comes from the fact that many virologists and other biologists are not familiar with the theory and practice of molecular phylogeny.” That might be true. However, generating correct data and observations is only half of the scientific process, the other half is their interpretation; and, as previously discussed (9), the interpretation of their own (presumably valid) molecular phylogeny data by Moreira and López-García was compromised by the current misleading paradigms on their nature and evolutionary origin.

      The allegations outlined here against the conventional paradigms on the nature and evolution of viruses are strong and implicating, climaxing with the assertion that the life and welfare of tens of millions of people suffering from neurodegenerative diseases might have been affected by the constrains imposed by the dogma of viruses as virus particles on understanding the true etiology of these devastating diseases and on the development of preventive and treatment approaches (14-16). It should be expected, therefore, that scientists working in these basic and applied biomedical fields would timely and openly refute or embrace these allegations. That might not happen, though, as it is well recognized by the historians and philosophers of science (28, 29) that the scientific theories, paradigms and dogmas, even if blatantly wrong, have a life of their own, which doesn’t necessarily follow Peter Medawar’s sensible recipe for conducting science: “The scientific method is a potentiation of common sense, exercised with a specially firm determination not to persist in error” (30). However, in this particular case, there is hope that some of the millions of patients affected by neurodegenerative diseases, as well as their family members and friends, might put some pressure on the scientists working these fields to either dismiss or to embrace these allegations.

      References:

      (1) Edwards, RA, Rohwer F. Viral metagenomics. 2005. Nat. Rev. Microbiol. 3:504-510. Edwards RA, 2005

      (2) Suttle C.A. 2007. Marine viruses--major players in the global ecosystem. Nat Rev Microbiol. 5:801-12. Suttle CA, 2007

      (3) Forterre P. 2006. The origin of viruses and their possible roles in major evolutionary transitions. Virus Res. 117:5-16. Forterre P, 2006

      (4) Claverie JM. 2006. Viruses take center stage in cellular evolution. Genome Biol. 7, 110. Claverie JM, 2006

      (5) Koonin EV, Senkevich TG, Dolja VV. 2006. The ancient Virus World and evolution of cells. Biol Direct. 1-27. Koonin EV, 2006

      (6) Bandea CI. 2009. A Unifying Scenario on the Origin and Evolution of Cellular and Viral Domains. Nature Precedings; http://precedings.nature.com/documents/3888/version/1

      (7) Rohwer F, Barott K. 2013. Viral information. Biol Philos. 28:283-297. Rohwer F, 2013

      (8) Bandea CI. 1983. A new theory on the origin and the nature of viruses. Journal of Theoretical Biology 105:591-602. Bândea CI, 1983

      (9) Bandea CI. 2009. The origin and evolution of viruses as molecular organisms. Nature Precedings; http://precedings.nature.com/documents/3886/version/1

      (10) Watson, JD. 1976. Molecular Biology of the Gene. Benjamin-Cummings, Menlo Park.

      (11) Forterre P. 2010. Giant viruses: conflicts in revisiting the virus concept. Intervirology. 53:362-78. Forterre P, 2010

      (12) Legendre M et al. 2014. Thirty-thousand-year-old distant relative of giant icosahedral DNA viruses with a pandoravirus morphology. Proc Natl Acad Sci U S A. 111:4274-9. Legendre M, 2014

      (13) Zimmer C. 2011. A Planet of Viruses. University of Chicago Press, Chicago.

      (14) Bandea CI. 1986. From prions to prionic viruses. Med Hypotheses. 20:139-142.Bândea CI, 1986

      (15) Bandea CI. 2009 Endogenous viral etiology of prion diseases. Nature Precedings; http://precedings.nature.com/documents/3887/version/1

      (16) Bandea CI. 2013. Aβ, tau, α-synuclein, huntingtin, TDP-43, PrP and AA are members of the innate immune system: a unifying hypothesis on the etiology of AD, PD, HD, ALS, CJD and RSA as innate immunity disorders. bioRxiv; http://biorxiv.org/content/early/2013/11/18/000604

      (17) Prusiner, SB. 1998. Prions. Proc. Natl. Acad. Sci. U. S. A. 95:13363-13383. Prusiner SB, 1998

      (18) Raoult D et al. 2004. The 1.2-megabase genome sequence of Mimivirus. Science. 306:1344-50. Raoult D, 2004

      (19) Philippe N et al. 2013. Pandoraviruses: amoeba viruses with genomes up to 2.5 Mb reaching that of parasitic eukaryotes. Science 341:281-6. Philippe N, 2013

      (20) Hoffmann R et al. 1998. Archaea-like endocytobiotic organisms isolated from Acanthamoeba sp. (Gr II). Endocytobiosis & Cell Res.12, 185.

      (21) Michel R et al. 2003. Endocytobiont KC5/2 induces transformation into sol-like cytoplasm of its host Acanthamoeba sp. as substrate for its own development. Parasitol Res. 90:52-6. Michel R, 2003

      (22) Scheid P et al. 2008. An extraordinary endocytobiont in Acanthamoeba sp. isolated from a patient with keratitis. Parasitol. Res.102, 945, (2008). Scheid P, 2008

      (23) Scheid P, Hauröder B, Michel R. 2010. Investigations of an extraordinary endocytobiont in Acanthamoeba sp.: development and replication. Parasitol Res.106:1371-7. Scheid P, 2010

      (24) Wolkowicz R, Schaechter M. 2008.What makes a virus a virus? Nat Rev Microbiol. 6:643. Wolkowicz R, 2008

      (25) Raoult D, Forterre P. 2008. Redefining viruses: lessons from Mimivirus. Nat Rev Microbiol. 6:315-9. Raoult D, 2008

      (26) Moreira D. & López-García P. 2009.Ten reasons to exclude viruses from the tree of life. Nature Rev. Microbiol. 7:306–311. Moreira D, 2009

      (27) Forterre P. 2013. The virocell concept and environmental microbiology.ISME J. 7:233-6. Forterre P, 2013

      (28) Kuhn TS. 1962. The Structure of Scientific Revolutions. University of Chicago Press, Chicago.

      (29) Popper K. 1963. Conjectures and Refutations: The Growth of Scientific Knowledge. Routledge, London

      (30) Medawar PB. 1969. Induction and Intuition in Scientific Thought. Methuen, London.


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    1. On 2015 May 17, Maya Guglin commented:

      It is true that patients with advanced HF typically have low blood pressure. That is why almost none of them are tolerating thiazide diuretics. In fact, not a single patient from our cohort was on thiazides, so their contribution to the reported effect of LVADs can be completely excluded. Admittedly, we did not record the doses of ACE inhibitors before and after LVADs, although cardiologists are known for neglecting uptitration of HF meds after LVAD implant.

      However, other publications on the same topic can shed some light on ACE doses, because I am sure some authors did record them. We summarized their findings in our recent paper "What did we learn about VADs in 2014?" published in our newborn "The VAD Journal". The text below is the excerpt from this paper.

      Several reports, including ours, unanimously confirmed the discovery made by Uriel et al.in 2011: diabetes improves after LVAD. Choudhary et al. also found that fasting blood glucose improved from 136 +/- 35 to 108 +/- 29 mg/dl post-LVAD (p < 0.001), and daily insulin dose decreased from 43 +/- 37 to 29 +/- 24 units (p = 0.02). Mohamedali et al. presented similar findings and added that some patients were able to completely discontinue oral hypoglycemics. Other groups published similar findings. The nature of this phenomenon is unclear; however, Koerner et al. measured cortisol and plasma catecholamine levels and found that both decreased after the LVAD implant. (6). This may mean that reduction of the systemic inflammatory and stress response may play a role. Otherwise, improved hemodynamics in either pancreas or peripheral tissues or both may be the cause of improvement of glucose metabolism. In any case, diabetes should not be considered a contraindication to LVAD.

      Uriel N, Naka Y, Colombo PC et al. Improved diabetic control in advanced heart failure patients treated with left ventricular assist devices. European journal of heart failure 2011;13:195-9.

      Choudhary N, Chen L, Kotyra L, Wittlin SD, Alexis JD. Improvement in glycemic control after left ventricular assist device implantation in advanced heart failure patients with diabetes mellitus. ASAIO journal (American Society for Artificial Internal Organs : 1992) 2014;60:675-80.

      Mohamedali B, Yost G, Bhat G. Mechanical circulatory support improves diabetic control in patients with advanced heart failure. European journal of heart failure 2014;16:1120-4.

      Subauste AR, Esfandiari NH, Qu Y et al. Impact of left ventricular assist device on diabetes management: an evaluation through case analysis and clinical impact. Hospital practice (1995) 2014;42:116-22.

      Koerner MM, El-Banayosy A, Eleuteri K et al. Neurohormonal regulation and improvement in blood glucose control: reduction of insulin requirement in patients with a nonpulsatile ventricular assist device. The heart surgery forum 2014;17:E98-102.


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    1. On 2015 Jan 14, Richard Schulz commented:

      This interesting paper challenges the traditional and widely held view of matrix metalloproteinases (MMPs) as secreted proteases which cleave extracellular proteins after activation in the pericellular space by the proteolytic removal of their inhibitory propeptide. It adds another novel entry to the growing number of intracellular functions performed by this family of 23 human enzymes [1,2].

      Yet some important findings regarding MMP localization, activation mechanisms and nuclear targets have been overlooked in this report. For example, Marchant et al wrote that “the intracellular transport and nuclear targeting mechanisms of these proteins are unknown, as are their intracellular roles”. However, MMP-2 does possess a canonical nuclear localization sequence [3], and MMP-2 and MMP-9 were identified a decade ago in purified nuclear fractions from heart and liver extracts, and visualized in the nuclei of cardiomyocytes by immunogold electron microscopy [3]. Furthermore, the nuclear proteins PARP1 [3] and XRCC1 [4] have both been shown to be proteolysed by MMPs.

      This paper ascribed the nuclear localization of MMP-12 to an unknown mechanism where it is secreted by macrophages and then taken up by the target cell and enters the nucleus. In contrast, there are at least 3 bona fide intracellular isoforms of MMP-2 [5,6]. MMP-2 has an N-terminal signal sequence that only inefficiently targets it to the secretory pathway, resulting in approximately half of it being retained in the cytosol [5]. In addition, two MMP-2 isoforms lacking the signal sequence (and hence non-secreted) are expressed in cardiomyocytes [5,6]. Intracellular MMP-2 [7] and other MMPs [8] can be activated by post-translational modifications triggered by oxidants such as peroxynitrite, without proteolytic removal of the inhibitory propeptide. Regarding these supposedly unknown “intracellular roles”, one pathological role of intracellular MMP-2 in cardiomyocytes is its cleavage of specific sarcomeric proteins such as troponin I, which results in acute contractile dysfunction in ischemia-reperfusion injury [1,2,9].

      In addition to MMP-12 and MMP-2, at least 6 other nuclear MMPs have already been reported [2]. Unbiased high throughput screens to identify putative MMP targets [2] suggest that several more nuclear protein targets will come to light, and unveil, as reported by Marchant et al for MMP-12, more nuclear functions for these proteases. In this respect, it is worth noting that the authors did not directly assess the potential contribution of MMP-12 to the transcription of endogenous genes but instead measured gene products (mRNA and protein). This is notable because the localization that they observe in HeLa cells reveals several large foci located in chromatin-depleted regions of the nucleus, which is not typical for a protein that binds to chromatin or regulates RNA polymerase II transcription, but shows some similarity to proteins involved in mRNA processing [10].

      A better understanding of how MMPs act within the cell will be key to the development of better targeted MMP inhibitors for the treatment of viral infections, cancer, inflammation and heart disease.

      This comment was written as a collaboration by Bryan G. Hughes, Sabina Baghirova, Michael J. Hendzel and Richard Schulz

      References

      1.Schulz R. Intracellular Targets of Matrix Metalloproteinase-2 in Cardiac Disease: Rationale and Therapeutic Approaches. Annual Review of Pharmacology and Toxicology 2007;47:211-242. Schulz R, 2007

      2.Cauwe B, Opdenakker G. Intracellular substrate cleavage: a novel dimension in the biochemistry, biology and pathology of matrix metalloproteinases. Crit Rev Biochem Mol Biol 2010;45:351-423.<br> Cauwe B, 2010

      3.Kwan JA, Schulze CJ, Wang W, Leon H, Sariahmetoglu M, Sung M, Sawicka J, Sims DE, Sawicki G, Schulz R. Matrix metalloproteinase-2 (MMP-2) is present in the nucleus of cardiac myocytes and is capable of cleaving poly (ADP-ribose) polymerase (PARP) in vitro. The FASEB Journal 2004;18:690-692.<br> Kwan JA, 2004

      4.Yang Y, Candelario-Jalil E, Thompson JF, Cuadrado E, Estrada EY, Rosell A, Montaner J, Rosenberg GA. Increased intranuclear matrix metalloproteinase activity in neurons interferes with oxidative DNA repair in focal cerebral ischemia. Journal of Neurochemistry 2010;112:134-149.<br> Yang Y, 2010

      5.Ali MAM, Chow AK, Kandasamy AD, Fan X, West LJ, Crawford BD, Simmen T, Schulz R. Mechanisms of cytosolic targeting of matrix metalloproteinase-2. Journal of Cellular Physiology 2012;227:3397-3404.<br> Ali MA, 2012

      6.Lovett DH, Mahimkar R, Raffai RL, Cape L, Maklashina E, Cecchini G, Karliner JS. A Novel Intracellular Isoform of Matrix Metalloproteinase-2 Induced by Oxidative Stress Activates Innate Immunity. PLoS One 2012;7:e34177.<br> Lovett DH, 2012

      7.Viappiani S, Nicolescu AC, Holt A, Sawicki G, Crawford BD, León H, van Mulligen T, Schulz R. Activation and modulation of 72 kDa matrix metalloproteinase-2 by peroxynitrite and glutathione. Biochemical Pharmacology 2009;77:826-834.<br> Viappiani S, 2009

      8.Okamoto T, Akaike T, Sawa T, Miyamoto Y, van der Vliet A, Maeda H. Activation of Matrix Metalloproteinases by Peroxynitrite-induced Protein S-Glutathiolation via Disulfide S-Oxide Formation. Journal of Biological Chemistry 2001;276:29596-29602.<br> Okamoto T, 2001

      9.Wang W, Schulze CJ, Suarez-Pinzon WL, Dyck JRB, Sawicki G, Schulz R. Intracellular Action of Matrix Metalloproteinase-2 Accounts for Acute Myocardial Ischemia and Reperfusion Injury. Circulation 2002;106:1543-1549.<br> Wang W, 2002

      10.Hendzel MJ, Kruhlak MJ, Bazett-Jones DP. Organization of Highly Acetylated Chromatin around Sites of Heterogeneous Nuclear RNA Accumulation. Molecular Biology of the Cell 1998;9:2491-2507.<br> Hendzel MJ, 1998


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    1. On 2015 Apr 19, Dorothy V M Bishop commented:

      The genetics of handedness is a topic where there seems to be a considerable mismatch between conventional wisdom, where handedness is regarded as a highly heritable trait, and research, which has struggled to find evidence of significant heritability. I am aware that a meta-analysis of twin studies by Medland and colleagues reported heritability of around .25, but a subsequent study by Armour et al (2014) with N = 3940 failed to find any locus that reached genome-wide significance. I also appreciate that this does not rule out genetic influences with small effect sizes, especially when the picture is made more complex by potential imprinting.

      I think, though, that the title of this paper does rather overstate the case in claiming that LRRTM1 mediates schizotypy and handedness. (My focus is solely on the claims regarding handedness).

      I appreciate that researchers in this area have some major problems to grapple with. One is that there is no agreement about how to define the phenotype of handedness. Most studies rely on handedness questionnaires, but these have only an imperfect relationship with measures of relative hand skill. In the absence of an adequate underlying model of etiology of handedness, almost any kind of measure can be justified: a binary distinction between left and right, a distinction between left, mixed and right, a continuous, quantitative scale, or a distinction between consistent (left or right) vs inconsistent (mixed) handers. As I argued many years ago, such flexibility is dangerous, because it almost always possible to find some handedness measure that will show an apparently meaningful relationship with a criterion measure (Bishop, 1990).

      In this study, the handedness measure was strength of handedness, assessed by "taking the absolute value of the handedness score such that values near zero represent mixed handedness and values near 64 represent strong handedness (right or left)." It is stated that this was done to be consistent with the previous study on LRRTM1 by Francks et al (2007). However, my impression was that Francks et al used a continuous quantitative phenotype that represented relative hand skill, with R>L at one end and L>R at the other. Thus the raw laterality quotient (-64 to +64) from the Waterloo Handedness Questionnaire would seem conceptually closer to the measure used by Francks et al than the absolute measure. It's possible I have misunderstood this (Francks et al is an exceedingly complex paper), but I'd be grateful for clarification.

      I find the title misleading because in the current paper the LRRTM1 SNPs were not associated with the absolute handedness measure used with this sample. (This cannot be regarded as a failure to replicate Francks et al, since parent-of-origin effect were not analyzed and the measurement of handedness appears to have been different). The reference in the title to the gene mediating handedness presumably refers to the significant correlation between methylation in CpG sites and absolute handedness. However, this result does not survive correction for multiple comparisons. I therefore would suggest that the evidence for an association between LRRTM1 and handedness in this study is not compelling.

      References

      Armour, J. A. L., Davison, A., & McManus, I. C. (2014). Genome-wide association study of handedness excludes simple genetic models. Heredity, 112(3), 221-225. doi: 10.1038/hdy.2013.93

      Bishop, D. V. M. (1990). How to increase your chances of obtaining a significant association between handedness and disorder. Journal of Clinical and Experimental Ñeuropsychology, 12, 786-790.

      Francks, C., Maegawa, S., Lauren, J., Abrahams, B. S., Velayos-Baeza, A., Medland, S. E., . . . Monaco, A. P. (2007). LRRTM1 on chromosome 2p12 is a maternally suppressed gene that is associated paternally with handedness and schizophrenia. Molecular Psychiatry, 12(12), 1129-1139.

      Medland, S. E., Duffy, D. L., Wright, M. J., Geffen, G. M., Hay, D. A., Levy, F., . . . Boomsma, D. I. (2009). Genetic influences on handedness: Data from 25,732 Australian and Dutch twin families. Neuropsychologia, 47(2), 330-337. doi: 10.1016/j.neuropsychologia.2008.09.005


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    2. On 2015 Apr 21, Bernard J Crespi commented:

      We are happy to clarify some points regarding our article, and reply to the issues raised in the comment from Dr. Bishop.

      First, we would consider the title of our article to be accurate, as it simply refers to mediation of schizotypy and handedness by the LRRTM1 gene, and does not, as the comment indicates, make any statements about SNPs in relation to handedness. We consider epigenetic phenomena, such as the methylation that we measured for LRRTM1, to be important mediators of a gene's functional effects. For example, Brucato et al. (2014) have recently linked methylation of LRRTM1 with risk of schizophrenia.

      Second, we used a measure of strength of handedness, which is compatible with Francks et al. (2007) only in being a continuous measure. We apologize in that we could have worded the relevant sentence more precisely. We did not use a specific measure that, like that of Francks et al. (2007), may confound handedness direction with handedness strength, because these two variables, direction and strength, appear to exhibit independent genetic underpinnings (e. g., Ocklenberg et al. 2014). Moreover, schizophrenia and schizotypy show associations predominantly with handedness strength, not direction, from previous work (e. g., Chapman et al. 2011).

      Third, we found a significant association at P = 0.026 (r = -0.375, product-moment correlation) for an association of PC1 (a composite methylation score) with handedness for our full sample, based on our predictions. We also provided the results for males and females separately, because of extensive evidence of gender differences for cognitive and psychiatric phenotypes such as those analyzed here. Considered separately, only the results for females were statistically significant (at r = -0.469, P = 0.032). Higher statistical significance would always be more compelling, of course.

      We welcome insightful comments and constructive criticism, and we hope that our results regarding LRRTM1 will motivate further research into the effects of genetic and epigenetic variation in this fascinating gene.

      References

      Brucato N, DeLisi LE, Fisher SE, Francks C. Hypomethylation of the paternally inherited LRRTM1 promoter linked to schizophrenia. Am J Med Genet B Neuropsychiatr Genet. 2014 Oct;165B(7):555-63.

      Chapman HL, Grimshaw GM, Nicholls ME. Going beyond students: an association between mixed-hand preference and schizotypy subscales in a general population. Psychiatry Res. 2011 May 15;187(1-2):89-93.

      Francks C, Maegawa S, Laurén J, … Monaco AP. LRRTM1 on chromosome 2p12 is a maternally suppressed gene that is associated paternally with handedness and schizophrenia. Mol Psychiatry. 2007 Dec;12(12):1129-39, 1057.

      Ocklenburg S, Beste C, Arning L. Handedness genetics: considering the phenotype. Front Psychol. 2014 Nov 11;5:1300.


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    1. On 2014 May 31, David Keller commented:

      Can Directional DBS be combined with Adaptive DBS to further optimize therapeutic effects?

      Directional DBS was shown to provide a therapeutic window 41.3% wider than for standard omnidirectional DBS, and to achieve this with a smaller electrode; this new technique seems to offer significant improvements over standard DBS.

      Standard DBS is observed to cause a syndrome of mild loss of verbal fluency due to the small amount of brain damage caused by the placement of the leads. Does the smaller lead size employed for directional DBS reduce this adverse side effect compared with standard lead placement surgery?

      Because it requires a new electrode, patients with pre-existing omnidirectional DBS will likely require repeat stereotactic neurosurgery to replace their brain leads when and if they need an upgrade to directional DBS. Waiting for directional DBS to be approved may be a reasonable choice for patients who can defer DBS.

      Recently, another new technique known as adaptive DBS (aDBS) was also demonstrated to provide meaningful improvements over standard DBS (1). aDBS involves using feedback from a pathological brain electrical signal to modulate the applied DBS signal, and it also serves to reduce the required electrical signal to achieve therapeutic effects.

      An obvious question arises: can we combine directional DBS with adaptive DBS, in order to more fully optimize their therapeutic effects? The answer to that question, according to Peter Brown, Professor of Experimental Neurology at University of Oxford, and principal investigator on the team which developed aDBS, is "I agree that the two could be usefully combined in the future" (2). I invite the scientists who developed dDBS to add their assessment of the utility of combining these 2 techniques, and to consider a collaborative effort with Dr. Brown to do so.

      Reference

      1: Little S, Pogosyan A, Neal S, Zavala B, Zrinzo L, Hariz M, Foltynie T, Limousin P, Ashkan K, FitzGerald J, Green AL, Aziz TZ, Brown P. Adaptive deep brain stimulation in advanced Parkinson disease. Ann Neurol. 2013 Sep;74(3):449-57. doi: 10.1002/ana.23951. Epub 2013 Jul 12. PubMed PMID: 23852650; PubMed Central PMCID: PMC3886292.

      2: Brown P, private correspondence, June 1, 2014


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    1. On 2014 Jun 02, Gaetano Santulli commented:

      In this article, Ribeiro and colleagues report that β2-adrenergic receptor (β2AR) knockout (KO) mice exhibit altered glucose homeostasis (1). Albeit surprisingly not reported by the Authors, the notion that deletion of the β2AR has profound effects on glucose metabolism is a consolidated acquisition. Indeed, we recently demonstrated that the deletion of β2AR impairs insulin release ultimately leading to glucose intolerance (2). Previously, Muzzin and colleagues had found that the lack of βARs associates with glucose intolerance (3). Findings from several groups support such a molecular mechanism (4-6). Equally important, in the clinical scenario, a mechanistic role for β2AR in the regulation of insulin secretion had been also suggested by the evidence of a decreased number of β2AR in type I diabetes mellitus patients (7-9). Nevertheless, the Authors fail to discuss previous relevant literature describing the alterations in glucose metabolism observed in β2AR KO mice and do not accurately circumstantiate their findings. In fact, they state that “available animal models indicate only a minor metabolic role” for β2AR. Moreover, despite insulin signaling has been shown to play a key role in the regulation of thermogenesis, as recently verified by Ron Kahn and colleagues (10), the Authors just show baseline serum insulin levels without providing any measurement (not even in isolated islets) following glucose challenge. We believe that for the sake of scientific appropriateness the Readers will appreciate a clarification by the Authors and the Editors, in particular regarding the fact that pertinent literature in the field has been overlooked.

      References:

      1. Fernandes GW, Ueta CB, Fonseca TL, Gouveia CH, Lancellotti CL, Brum PC, Christoffolete MA, Bianco AC, Ribeiro MO 2014 Inactivation of the adrenergic receptor beta2 disrupts glucose homeostasis in mice. The Journal of endocrinology 221:381-390
      2. Santulli G, Lombardi A, Sorriento D, Anastasio A, Del Giudice C, Formisano P, Beguinot F, Trimarco B, Miele C, Iaccarino G 2012 Age-related impairment in insulin release: the essential role of beta(2)-adrenergic receptor. Diabetes 61:692-701
      3. Asensio C, Jimenez M, Kuhne F, Rohner-Jeanrenaud F, Muzzin P 2005 The lack of beta-adrenoceptors results in enhanced insulin sensitivity in mice exhibiting increased adiposity and glucose intolerance. Diabetes 54:3490-3495
      4. Panagiotidis G, Stenstrom A, Lundquist I 1993 Influence of beta 2-adrenoceptor stimulation and glucose on islet monoamine oxidase activity and insulin secretory response in the mouse. Pancreas 8:368-374
      5. Ahren B, Jarhult J, Lundquist I 1981 Insulin secretion induced by glucose and by stimulation of beta 2 -adrenoceptors in the rat. Different sensitivity to somatostatin. Acta physiologica Scandinavica 112:421-426
      6. Loubatieres A, Mariani MM, Sorel G, Savi L 1971 The action of beta-adrenergic blocking and stimulating agents on insulin secretion. Characterization of the type of beta receptor. Diabetologia 7:127-132
      7. Schwab KO, Bartels H, Martin C, Leichtenschlag EM 1993 Decreased beta 2-adrenoceptor density and decreased isoproterenol induced c-AMP increase in juvenile type I diabetes mellitus: an additional cause of severe hypoglycaemia in childhood diabetes? European journal of pediatrics 152:797-801
      8. Noji T, Tashiro M, Yagi H, Nagashima K, Suzuki S, Kuroume T 1986 Adaptive regulation of beta-adrenergic receptors in children with insulin dependent diabetes mellitus. Hormone and metabolic research = Hormon- und Stoffwechselforschung = Hormones et metabolisme 18:604-606
      9. Santulli G, Iaccarino G 2013 Pinpointing beta adrenergic receptor in ageing pathophysiology: victim or executioner? Evidence from crime scenes. Immunity & ageing : I & A 10:10
      10. Boucher J, Mori MA, Lee KY, Smyth G, Liew CW, Macotela Y, Rourk M, Bluher M, Russell SJ, Kahn CR 2012 Impaired thermogenesis and adipose tissue development in mice with fat-specific disruption of insulin and IGF-1 signalling. Nature communications 3:902

      Gaetano Santulli MD, PhD (1,2) and Guido Iaccarino MD, PhD (3,4)

      From the (1) College of Physicians & Surgeons, Columbia University Medical Center, New York, NY, USA; (2) Departments of Translational Medical Sciences and Advanced Biomedical Sciences, “Federico II” University, Naples Italy; (3) Department of Medicine and Surgery, University of Salerno, Salerno, Italy; (4) IRCCS Multimedica, Milan, Italy.


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    1. On 2014 Jun 03, David Keller commented:

      Two large, well-designed randomized trials agree: Multivitamins reduce cancer risk in men

      Guallar and colleagues dismiss the clinical trial data demonstrating that multivitamin and mineral supplements (MVM’s) reduce cancer risk in men, stating: “ Because the observed possible benefits were limited to men, were modest (as in PHS II), or were evident only in subgroup analyses (as in the SU.VI.MAX study) and did not consistently extend to reductions in mortality, these findings are only weak signals compatible with small or no benefit.” (1)

      I will challenge each clause of their compound statement separately, but first, for the record, I quote the abstract of the Su.Vi.Max study (2):

      "However, a significant interaction between sex and group effects on cancer incidence was found (P = .004). Sex-stratified analysis showed a protective effect of antioxidants in men (relative risk, 0.69 [95% confidence interval {CI}, 0.53-0.91]) but not in women (relative risk, 1.04 [95% CI, 0.85-1.29]). A similar trend was observed for all-cause mortality (relative risk, 0.63 [95% CI, 0.42-0.93] in men vs 1.03 [95% CI, 0.64-1.63] in women; P = .11 for interaction)."

      Simply stated: Men who took multivitamins had significantly fewer cancers and a lower overall death rate than men who did not. These were not small effects: the cancer rate for men was reduced by 31% and the overall death rate by 37%.

      First, let us discuss the fact that these benefits “were evident only in subgroup analyses”. Multiple post-hoc subgroup analyses are frowned on because they can be used to dredge the data for statistical flukes, such as finding that the tested intervention benefits only persons born under a certain astrological sign, or some other biologically implausible subgroup. The criteria for an acceptable subgroup analysis are: the subgroup should be rational, predefined in the experimental protocol, based on pre-randomization patient characteristics, large enough to retain statistical power, one of only a small number of such analyses, and the subgroup effect should be evident in other studies (3,4). The Su.vi.max subgroup analysis met these requirements; it was conducted on men, a large, natural subgroup which derived benefits in another study and was pre-specified in the study protocol. This rigorous analysis for the male subgroup yielded unambiguous results, the integrity of which withstands methodological scrutiny.

      Guallar and colleagues also cast doubt on the data because the benefits of MVM’s were limited to men. The Su.vi.max investigators explained this by noting that women generally have better nutritional status than men; they are both more likely to eat fruits and vegetables, and also more likely to take MVM’s at baseline. Women, with good baseline nutrition, have less to gain by taking MVM’s and therefore exhibit no benefit in these studies.

      There are many differences between men and women, both biological and cultural, which result, for one thing, in the fact that women outlive men by several years on average. The Su.vi.max and PHS-II study results indicate that relative dietary deficiencies of micro-nutrients may help explain the premature mortality of the male half of the population, as compared with the female.

      As I pointed out in another comment (5), the five antioxidants included in the Su.vi.max supplement were a subset of the 30 nutrients in Centrum Silver, but at significantly higher doses. Thus, there was a dose-response effect evident for these antioxidants, with the PHS-II men who took MVM’s displaying a small but significant reduction in cancer rates, and the Su.vi.max men exhibiting a larger reduction in cancer rates, plus a decrease in all-cause mortality, consistent with the higher nutrient levels in the Su.vi.max supplement. The dose-response effect explains why the men in Su.vi.max had lower cancer rates compared with the men in PHS-II, and a significant reduction in overall mortality: they were taking higher doses of the beneficial micronutrients. Guallar’s complaint that the reduction in mortality was “not consistent” is thus refuted.

      The USPSTF update again gave MVM supplements a grade of “I” (insufficient evidence to make a recommendation for the general population) for cancer prevention. However, NIH regulations mandate that clinical studies be analyzed separately for men and women when the response to an intervention differs by sex (6). Given the quality of the data supporting MVM use for men, USPSTF should change their rating of MVM supplements to at least a “C” level recommendation for men - meaning that men should discuss MVM supplements with their doctors in the context of their individual diet quality and nutritional status.

      Unless they are consuming a diet rich in fruits and vegetables, men should consider adding a standard multivitamin & mineral supplement to reduce their risk of cancer, according to the best available evidence from two large, prospective randomized trials.

      References:

      1: Guallar E. Enough Is Enough, Annals of Int Med. June 3 2014; Vol 160, No. 9

      2: Hercberg S, Galan P, Preziosi P, Bertrais S, Mennen L, Malvy D, et al. The SU.VI.MAX Study: a randomized, placebo-controlled trial of the health effects of antioxidant vitamins and minerals. Arch Intern Med. 2004; 164:2335-42.

      3: Wittes J. On Looking at Subgroups. Circulation.2009; 119: 912-915 doi: 10.1161/CIRCULATIONAHA.108.836601

      4: Dijkman B, et al. How to work with a subgroup analysis. Can J Surg. Dec 2009; 52(6): 515–522. PMCID: PMC2792383

      5: Keller DL. Open letter to the USPSTF: the evidence shows multivitamins reduce cancers in men, PubMed Commons, accessed on 6/3/2014 http://www.ncbi.nlm.nih.gov/pubmed/24566474#cm24566474_4093

      6: NIH website, accessed on 6/29/2014 http://grants.nih.gov/grants/funding/women_min/guidelines_update.htm


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    1. On 2015 May 29, David Reardon commented:

      In previous studies of the intersection of reproductive health and mental health, Munk-Olsen's team has failed to control for the impact of prior pregnancy losses (miscarriage and induced abortion). See for example Munk-Olsen T, 2012, Munk-Olsen T, 2012, Munk-Olsen T, 2011 and my comments on each entry with requests for additional analyses to address these oversights . . . all of which have been refused.

      In this case, once again, Munk-Olsen's examination of psychiatric disorders following fetal death is flawed by her decision to disclose the effects of induced abortions on the analyses. She reports that IRR were adjusted for "age, calendar period, parity status, induced abortion status and family history of formerly treated psychiatric disorders" but she chose not to report on how each of these factors contributed to psychiatric illness. This appears to be selective reporting to avoid publication of data that contradicts her previous claims that abortion does not contribute to mental health problems.

      Numerous other researchers, in many countries using many different methodologies, have found that both natural miscarriage and induced abortion have distinct effects on subsequent mental health, especially during and after subsequent pregnancies. Below is a list of such studies.

      I once again ask Munk-Olsen to address these oversights by publishing analyses which compare outcomes relative to the full reproductive history of women, including segregated results showing the outcome relative to no prior pregnancy loss, one or more miscarriages, one or more induced abortions, and for women with a history of at least one induced abortion and one miscarriage.

      See for example:

      • Giannandrea SA, 2013 Increased risk for postpartum psychiatric disorders among women with past pregnancy loss. Giannandrea SA, Cerulli C, Anson E, Chaudron LH. J Womens Health (Larchmt). 2013 Sep;22(9):760-8. doi: 10.1089/jwh.2012.4011.

      • Gong X, 2013 Pregnancy loss and anxiety and depression during subsequent pregnancies: data from the C-ABC study. Eur J Obstet Gynecol Reprod Biol. 2013 Jan;166(1):30-6. doi: 10.1016/j.ejogrb.2012.09.024. Epub 2012 Nov 10.Source School of Public Health, Anhui Medical University, Hefei, Anhui, China.

      • Coleman PK, 2002 History of induced abortion in relation to substance abuse during subsequent pregnancies carried to term. Am J Obstet Gynecol 187: 1673-1678, 2002.

      • Coleman PK, 2005 Substance use among pregnant women in the context of previous reproductive loss and desire for current pregnancy. Br J Health Psychol 2005; 10: 255–68.

      • Reardon DC, 2003 Psychiatric admissions of low income women following abortion and childbirth. Can Med Assoc J. 2003; 168(10):1253-7

      • Coleman PK, 2002 State-funded abortions vs. deliveries: A comparison of outpatient mental health claims over five years. American Journal of Orthopsychiatry, 2002; 72(1):141–52.

      • H David et al, "Postabortion or Postpartum Psychotic Reactions," Family Planning Perspectives 13(2): 892, 1981

      • Ronald Somers, "Risk of Admission to Psychiatric Institutions among Danish Women Who Experienced Induced Abortion: An Analysis Based on A National Record Linkage," Dissertation Abstracts Int'l, Public Health 2621-B, 1979.


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    1. On 2014 Jun 26, Jackie Marchington commented:

      Ghostwriting is neither common nor current

      We, the members of the Global Alliance for Publication Professionals, are concerned by the implication in Gabriel and Goldberg’s article that ghostwriting is a common and current practice in pharmaceutical industry-sponsored research reporting.

      We wholeheartedly agree that ghostwriting – undisclosed writing support, of any kind – is dishonest and unethical. We understand that the thrust of Gabriel and Goldberg’s article is not about ghostwriting, but casual references to ghostwriting in the present tense and use of anecdotal and popularised stories about its frequency are not supported by published evidence. We appreciate why Gabriel and Goldberg (and others) have the perception that ghostwriting is common, given the lack of critical analysis of early reports of ghostwriting and the traction that this perception has had in the literature, despite subsequent research that refutes it. The prevalence of ghostwriting is small (0.16%) and decreasing.[1] Indeed, the first systematic review on the prevalence of ghostwriting (Stretton S; accepted for publication in BMJ Open) documents how early estimates of ghostwriting have been poorly interpreted, incorrectly cited, and published without critical review.

      In contrast to ghostwriters, professional medical writers are transparent about their contributions, work within ethical guidelines and ensure that authors control the content at every step of the process.[2–4] In addition, articles written with professional medical writing assistance are more likely to comply with reporting standards[5,6] and are less likely to be retracted for misconduct.[7]

      The World Association of Medical Editors (WAME) Editorial Policy Committee statement quoted by Gabriel and Goldberg goes on to state that professional medical writers can be legitimate contributors to an article as long as their roles, affiliations and funding are described in the manuscript,[8] as do the recently revised International Committee of Medical Journal Editors’ (ICMJE) recommendations for the conduct, reporting, editing, and publication of scholarly work in medical journals.[9]

      Gabriel and Goldberg also mention that reform efforts in the US are underway, but make no reference to any of the steps taken internationally by the pharmaceutical industry and by publication professionals to create best practice guidelines relating to ethical and transparent publication development. [10–13] The recently published Global Publication Survey of publication professionals shows that these guidelines are routinely followed by over 90% of pharmaceutical industry, medical communications agency and contract research organization (CRO) respondents, and that acknowledgement of medical writing support by authors working with publication professionals was almost universal (96% industry, 99% agency, 100% CRO).[14]

      Gabriel and Goldberg discuss a range of activities they describe as “...dubious practices that should be significantly curtailed if not entirely eliminated”. As previously stated, we wholeheartedly agree that ghostwriting should be curtailed and eliminated, and we believe the publications we have cited demonstrate the commitment and progress of professional medical writers – not ghostwriters – towards this goal.

      Authors and affiliations Jackie Marchington PhD CMPP,a Art Gertel MS,b Cindy W. Hamilton PharmD,c Adam Jacobs PhD,d Karen L. Woolley PhD CMPPe (Global Alliance of Publication Professionals; www.gappteam.org) a. Director of Operations, Caudex Medical, UK. b. Principal Consultant, MedSciCom, LLC c. Assistant Clinical Professor, Virginia Commonwealth University School of Pharmacy; Principal, Hamilton House, USA. d. Director, Dianthus Medical Limited, UK. e. Divisional Lead. ProScribe – Envision Pharma Group; Adjunct Professor, University of the Sunshine Coast, Australia; Adjunct Professor, University of Queensland, Australia; Director, Sunshine Coast Hospital and Health Service. Disclosure: All authors declare that: 1) we have provided or do provide ethical medical writing services to academic, biotechnology, or pharmaceutical clients, 2) KW’s husband is also an employee of Proscribe – Envision Pharma Group; all other authors’ spouses, partners, or children have no financial relationships that may be relevant to the submitted work; and 3) we are active in national and international not-for-profit associations that encourage ethical medical writing practices. No external sponsors were involved in the preparation of this comment, and no external funding was used.

      References 1. Wislar JS, 2011 2. International Society for Medical Publication Professionals. Code of Ethics. Available: http://www.ismpp.org/ismpp-code-of-ethics. Accessed 14 April 2014. 3. American Medical Writers Association. AMWA Code of ethics. Available: http://www.amwa.org/amwa_ethics. Accessed 14 April 2014. 4. Jacobs A, 2005 5. Global Alliance of Publication Professionals (GAPP):., 2012 6. Jacobs A (2010) Adherence to the CONSORT guideline in papers written by professional medical writers. Med Writ 19: 196–200. 7. Woolley KL, 2011 8. WAME Editorial Policy Committee (2005) Policy Statements: #Ghost Writing. Available: <http://www.wame.org/about/policy-statements#Ghost Writing>. Accessed 23 June 2014. 9. International Committee of Medical Journal Editors. Recommendations for the Conduct, Reporting, Editing, and Publication of Scholarly work in Medical Journals. Available: http://www.icmje.org/recommendations/. Accessed 14 April 2014. 10. Wager E, 2003 11. Graf C, 2009 12. Chipperfield L, 2010 13. Clark J, 2010 14. Wager E, 2014


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    1. On 2014 Dec 31, William Grant commented:

      The paper by Huss and colleagues studied the relation between 25-hydroxyvirtamin D [25(OH)D] concentrations and breast cancer mortality rates for women enrolled in the Malmö Diet and Cancer Study observed between 1991 and 2006 [1]. 17,035 women completed the baseline examination, and from these, 672 women were diagnosed with invasive unilateral breast cancer after baseline, of whom 101 died from breast cancer and 54 died from other causes. The mean time between enrollment and breast cancer was 6.0 to 8.3 years with standard deviations of 7.4 to 8.9 years. They found a U-shaped relation between 25(OH)D concentration at baseline and mortality rate for three tertiles with ranges <75 nmol/L 76-99 nmol/L, and >100 nmol/L. Each tertile had 216 to 221 invasive breast cancer cases and 21 to 30 breast cancer specific deaths. While no explanation was given why high 25(OH)D concentrations should be associated with increased risk. In this comment, I present three reasons why the increased mortality rate at the highest 25(OH)D tertile is probably not representative of natural 25(OH)D concentrations, i.e., derived from solar UVB or diet.

      First, breast cancer develops very rapidly, so baseline 25(OH)D concentrations are not useful for long-term studies. For example, there is a global seasonality of breast cancer incidence rates, with peaks in spring and fall [2]. The authors of this paper suggested that UVB and vitamin D reduce incidence rates in summer while dark days and melatonin reduce incidence rates in winter. In addition, breast cancer screening using mammography is recommended annually, unlike colorectal cancer, for which decadal screening is generally used. There are large seasonal variations in 25(OH)D concentrations in Europe [3]. In addition, there are significant drifts in 25(OH)D concentrations over periods of years such that for periods longer than about three years, observational studies generally do not find significant inverse correlations between baseline 25(OH)D concentration and incidence of breast cancer, although they do for colorectal cancer [4]. Long follow-up times also adversely affect observational studies of all-cause mortality rate with respect to baseline 25(OH)D concentration [5].

      Second, 25(OH)D concentrations above 100 nmol/L are most likely due to vitamin D supplementation. In addition, the supplementation may have begun late in life, perhaps after a physician noticed a vitamin D deficiency disease such as osteoporosis, or in order to prevent osteoporosis. Support for this hypothesis is found in a pair of observational studies on frailty as a function of 25(OH)D concentrations. In a cross-sectional study of elderly men in the United States, there was a monotonic decrease in frailty status with increasing 25(OH)D concentration [6]. However, in a similar study of elderly women, there was a U-shaped relation, with those having 25(OH)D concentration >75 nmol/L having significantly increased prevalence of frailty than those with 50 nmol/L <25(OH)D <75 nmol/L [7]. In the United States, postmenopausal women are often advised to take vitamin D supplements while men are not.

      Third, there is no support for a U-shaped breast cancer mortality rate relation from geographical ecological studies with respect to solar UVB doses. In Ref. 8, there is a graph of breast cancer mortality rate with respect to July solar UVB doses in over 400 state economic areas of the United States. The regression line shows a monotonically decreasing mortality rate with respect so solar UVB doses from 3.5 kJ/m2 to 10 kJ/m2 with no evidence in the data of an upturn at higher UVB doses. Other ecological studies from mid- to high-latitude countries also do not show evidence of a U-shaped relation [9].

      Thus, for these three reasons the finding of increased breast cancer specific mortality rate for 25(OH)D concentrations >100 nmol/L is most likely not due to long term natural 25(OH)D concentrations but, rather, vitamin D supplementation late in life. This does not imply that taking vitamin D supplements to raise 25(OH)D concentrations above 100 nmol/L is not recommended. However, it suggests that taking supplements should begin earlier in life since many chronic diseases including cancer can develop over periods of decades. That high concentrations are not adverse per se is demonstrated in a recent meta-analysis of 32 prospective observational studies of all-cause mortality rate with respect to baseline 25(OH)D concentration. There was a nearly linear decrease in the hazard ratio from 0-25 nmol/L to 50-73 nmol/L with a minimum reached at 90 nmol/L, after which there was no change [10].

      References 1. Huss L, Butt S, Borgquist S, Almquist M, Malm J, Manjer J. Serum levels of vitamin D, parathyroid hormone and calcium in relation to survival following breast cancer. Cancer Causes Control. 2014;25:1131-1140. 2. Oh EY, Ansell C, Nawaz H, Yang CH, Wood PA, Hrushesky WJ. Global breast cancer seasonality. Breast Cancer Res Treat. 2010;123:233-243. 3. Hyppönen E, Power C. Hypovitaminosis D in British adults at age 45 y: nationwide cohort study of dietary and lifestyle predictors. Am J Clin Nutr. 2007;85:860-868. 4. Grant WB. Effect of interval between serum draw and follow-up period on relative risk of cancer incidence with respect to 25-hydroxyvitamin D level; implications for meta-analyses and setting vitamin D guidelines. Dermatoendocrinol. 2011;3:199-204. 5. Grant WB. Effect of follow-up time on the relation between prediagnostic serum 25-hydroxyitamin D and all-cause mortality rate. Dermatoendocrinol. 2012;4:198-202. 6. Ensrud KE, Blackwell TL, Cauley JA, Cummings SR, Barrett-Connor E, Dam TT, Hoffman AR, Shikany JM, Lane NE, Stefanick ML, Orwoll ES, Cawthon PM; Osteoporotic Fractures in Men Study Group. Circulating 25-hydroxyvitamin D levels and frailty in older men: the osteoporotic fractures in men study. J Am Geriatr Soc. 2011;59:101-106. 7. Ensrud KE, Ewing SK, Fredman L, Hochberg MC, Cauley JA, Hillier TA, Cummings SR, Yaffe K, Cawthon PM; Study of Osteoporotic Fractures Research Group. Circulating 25-hydroxyvitamin D levels and frailty status in older women. J Clin Endocrinol Metab. 2010;95:5266-5273. 8. Grant WB. An estimate of premature cancer mortality in the U.S. due to inadequate doses of solar ultraviolet-B radiation. Cancer. 2002;94:1867-75. 9. Moukayed M, Grant WB. Molecular link between vitamin D and cancer prevention. Nutrients. 2013;5:3993-4023. 10. Garland CF, Kim JJ, Mohr SB, Gorham ED, Grant WB, Giovannucci EL, Baggerly L, Hofflich H, Ramsdell J, Zeng K, Heaney RP. Meta-analysis of all-cause mortality according to serum 25-hydroxyvitamin D. Am J Pub Health. 2014;104:e43-50.

      Disclosure I receive funding from Bio-Tech Pharmacal (Fayetteville, AR) and Medi-Sun Engineering, LLC (Highland Park, IL).


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    1. On 2014 Aug 16, A Martinez-Arias commented:

      There is much that is interesting and significant in this work but the section on ES cells needs to be looked at closely, particularly as the conclusions drawn here (that YAP/TAZ loss of function favours pluripotency) are at odds with others published (that YAP/TAZ are necessary for pluripotency [1]).

      Here Azzolin et al. show that loss of function for YAP/TAZ can substitute for Chiron in 2i conditions. As Chiron leads to the upregulation of ß-catenin, the authors conclude that in keeping with their other findings, the effects of YAP/TAZ in pluripotency, are due to ß-catenin. Something supported by the dependence of this effect on the presence of ß-catenin. The experiments are clear but the interpretation should be given some thought.

      There are three facts that need to be considered in the interpretation of these results. (a) 2i conditions are special non-physiological conditions which set cells in a peculiar, though experimentally useful, state; in fact, 2i really means “2 out of 3 (PD03, CHIR and LIF)” as LIF+PD03 and LIF+CHIR will work as well as PD03+CHIR [2] in maintaining pluripotency. In fact, ß-catenin mutant cells can be maintained in PD03+LIF, an observation which has been used to state that ß-catenin is not required for pluripotency [2]. (b) There is evidence that the levels of Oct4 are crucial for the maintenance of pluripotency [3-5] and that there is a very close relationship between ß-catenin and Oct4 [6-8]. This might be important in the interpretation of the results here. (c) The function of ß-catenin is pluripotency is not mediated by its transcriptional activity. It is curious that the authors quote Wray et al [2] in support of ß-catenin transcriptional activity in pluripotency when the manuscript shows and states that the transcriptional activity of ß-catenin is dispensable for pluripotency. Something that is further supported by studies in GSK3 mutants that lead to high levels of ß-catenin transcriptional activity which upon introduction of a dominant negative Tcf4, can be shown to be irrelevant for pluripotency [8 see also 2, 6 and 7].

      The results on transcriptional activities of YAP/TAZ in ES cells and their overlap with ß-catenin/Tcf are therefore not particularly relevant to the interpretation of the results but the other two might be, as there is a need to understand the discrepancy with previous experiments. It would have been good if the authors had repeated some of their experiments in Serum and LIF or LIF and BMP to have a proper comparison. As it is, we can only consider possibilities. Lin et al. [1] show that YAP/TAZ leads to upregulation of Oct4 and it is known that lowering the levels of ß-catenin leads to increases in Oct4. As low Oct4 favours pluripotency [3, 4], could it be that lowering YAP/TAZ in 2i lowers the levels of Oct4 which then balance the ratios of the different factors and maintains pluripotency? This would provide a partial explanation for the discrepancy. There are two other possibilities worth considering. Could it be that in the same manner that 2i is ‘two out of three’, could be that it is “two out of four”, the fouth being YAP/TAZ? Finally, a key event in pluripotency is the downregulation of Tcf3 whose mechanism remains open [9]. Could it be that YAP/TAZ helps ß-catenin to downregulate Tcf3?

      Removal of YAP/TAZ in 2i conditions has no effect on pluripotency, which is not surprising as in 2i condition cells are, for the most part, at the maximum capacity for pluripotency. However, to date the factors involved in 2i have been shown to also maintain pluripotency in Serum or Serum free conditions (at this it is surprising to observe the inability of PD03 to maintain pluripotency, which contradicts multiple previous results). For this reason it would be good to know if the authors have performed knock downs of YAP/TAZ in conditions other than 2i as only then one can consider the portrayed discrepancy.

      References

      [1] Lian I, Kim J, Okazawa H, Zhao J, Zhao B, Yu J, Chinnaiyan A, Israel MA, Goldstein LS, Abujarour R, Ding S, Guan KL. (2010) The role of YAP transcription coactivator in regulating stem cell self-renewal and differentiation. Genes Dev. 24,1106-18.

      [2] Wray, J., Kalkan, T., Gomez-Lopez, S., Eckardt, D., Cook, A., Kemler, R. and Smith, A. (2011) 'Inhibition of glycogen synthase kinase-3 alleviates Tcf3 repression of the pluripotency network and increases embryonic stem cell resistance to differentiation', Nat Cell Biol. 13, 838-45.

      [3] Radzisheuskaya A, Le Bin Chia G, dos Santos R, Theunissen TW, Castrro LF, Nichols J, Silva J (2013) Defined Oct4 level governs cell state transitions of pluripotency entry and differentiation into all embryonic lineages. Nature Cell Biology 15, 579-90. [4] Karwacki-Neisius V, Goke J, Osorno R, Halbritter F, Ng JH, Weisse AY, Wong FC, Gagliardi A, Mullin NP, Festuccia N, Colby D, Tomlinson SR, Ng HH, Chambers I (2013) Reduced oct4 expression directs a robust pluripotent state with distinct signaling activity and increased enhancer occupancy by oct4 and nanog. Cell Stem Cell 12: 531-45.

      [5] Muñoz Descalzo S, Rué P, Faunes F, Hayward P, Jakt LM, Balayo T, Garcia-Ojalvo J, Martinez Arias A. (2013) A competitive protein interaction network buffers Oct4-mediated differentiation to promote pluripotency in embryonic stem cells. Mol Syst Biol. 9:694.

      [6] Faunes F, Hayward P, Muñoz-Descalzo S, Chatterjee SS, Balayo T, Trott J, Christophorou A, Ferrer-Vaquer A, Hadjantonakis AK, DasGupta R, Martinez Arias A (2013) A membrane-associated β-catenin/Oct4 complex correlates with ground-state pluripotency in mouse embryonic stem cells. Development 140: 1171-83.

      [7] Livigni A, Peradziryi H, Sharov AA, Chia G, Hammachi F, Migueles RP, Sukparangsi W, Pernagallo S, Bradley M, Nichols J, Ko MS, Brickman JM. (2013) A conserved Oct4/POUV-dependent network links adhesion and migration to progenitor maintenance. Curr Biol. 123:2233-44.

      [8] Kelly, K. F., Ng, D. Y., Jayakumaran, G., Wood, G. A., Koide, H. and Doble, B. W. (2011) 'beta-catenin enhances Oct-4 activity and reinforces pluripotency through a TCF-independent mechanism', Cell Stem Cell 8, 214-27.

      [9] Yi F, Pereira L, Hoffman JA, Shy BR, Yuen CM, Liu DR, Merrill BJ. (2011) Opposing effects of Tcf3 and Tcf1 control Wnt stimulation of embryonic stem cell self-renewal. Nat Cell Biol. 13, 762-70.


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    1. On 2016 Oct 16, Jaime A. Teixeira da Silva commented:

      This paper has been retracted: "BioMed Research International has retracted this article. The article was found to contain images with signs of duplication and manipulation in Figures 1(a), 1(b), 1(d), 2(b), 3(a), 3(b), 3(c), 3(d), 3(k), 4(d), 4(g), 4(m), 4(p), 8, 10(c), 10(d), 10(e), 10(f), 10(g), 10(h), 10(i), 10(j), 10(k), 10(l), and 10(o) and duplication from Talukdar D. An induced glutathione-deficient mutant in grass pea (Lathyrus sativus L.): Modifications in plant morphology, alteration in antioxidant activities and increased sensitivity to cadmium. Biorem. Biodiv Bioavail. 2012; 6: 75–86 in Figure 2B and from Dibyendu Talukdar and Tulika Talukdar, “Superoxide-Dismutase Deficient Mutants in Common Beans (Phaseolus vulgaris L.): Genetic Control, Differential Expressions of Isozymes, and Sensitivity to Arsenic,” BioMed Research International, vol. 2013, Article ID 782450, 11 pages, 2013, doi: 10.1155/2013/782450 in Figure 10."


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    1. On 2014 Dec 30, William Grant commented:

      Geographical variations in solar ultraviolet-B doses may explain some of the spatial-temporal excess mortality patterns of the 1918-1919 influenza pandemic in Spain

      Disclosure I receive funding from Bio-Tech Pharmacal (Fayetteville, AR), the Sunlight Research Forum (Veldhoven), and Medi-Sun Engineering, LLC (Highland Park, IL).

      The paper by Chowell and colleagues presents maps of excess respiratory death rates during the 1918-1919 influenza pandemic in Spain 1. The summer and winter peak rates are in the center and south of Spain, while the fall peak rates are predominantly in the north. The authors suggested that colder temperatures and lower humidity in the north and in fall-winter might explain the observed patterns. I agree that this suggestion is generally correct. However, there is another factor that should also be considered - the role of solar UVB irradiance and vitamin D production. In an ecological study of the 1918-1919 influenza pandemic in the United States, it was reported that both summertime and wintertime solar UVB doses were inversely correlated with case-fatality rates for a dozen communities 2. Most of the deaths associated with the influenza were due to pneumonia, and occurred about ten days after the start of influenza. The mechanisms suggested were induction of cathelicidin, which has antibiotic properties, and reduction of the cytokine storm due to the body fighting influenza. The UVB-vitamin D-influenza hypothesis was proposed in 2006 by John Cannell and colleagues 3. This hypothesis has gained further support from vitamin D randomized controlled trials involving people with low 25-hydroxyvitamin D-25OHD concentrations at the time of enrollment in the trials 4-6.

      Broadband solar UVB doses have been measured for 14 locations in Spain 7. In summer, values at solar noon ranged from 1234 to 1726 units but do not follow a strict latitude gradient. In winter, the values ranged from 160 to 348 and showed a strong latitudinal gradient. Based on these values, the higher mortality rates in winter and in the north may be due in part to lower UVB doses in winter. The higher rates in south and central Spain in summer may be related to where influenza was first introduced into Spain. A related paper found that cancer mortality rates were often inversely correlated with latitude and directly correlated with nonmelanoma skin cancer 8.

      This analysis suggests that 25OHD concentrations be raised by vitamin D supplementation in winter in Europe to reduce the risk of respiratory infections. Optimal 25OHD concentrations are between 75 and 125 nmol per L 9, which can be achieved with 800-2000 IU per day vitamin D3 for most people 10. There are also many other beneficial effects of higher 25OHD concentrations 9, 11.

      References 1. Chowell G, Erkoreka A, Viboud C, Echeverri-Dávila B. Spatial-temporal excess mortality patterns of the 1918-1919 influenza pandemic in Spain. BMC Infect Dis. 2014;14:371. 2. Grant WB, Giovannucci E. The possible roles of solar ultraviolet-B radiation and vitamin D in reducing case-fatality rates from the 1918–1919 influenza pandemic in the United States. Dermatoendocrinol. 2009;1:215-9. 3. Cannell JJ, Vieth R, Umhau JC, Holick MF, Grant WB, Madronich S, Garland CF, Giovannucci E. Epidemic influenza and vitamin D. Epidemiol Infect. 2006;134:1129-40.<br> 4. Aloia JF, Li-Ng M. Re: epidemic influenza and vitamin D. Epidemiol Infect. 2007 Oct;135:1095-6; author reply 1097-8. 5. Urashima M, Segawa T, Okazaki M, Kurihara M, Wada Y, Ida H. Randomized trial of vitamin D supplementation to prevent seasonal influenza A in schoolchildren. Am J Clin Nutr. 2010;91:1255-60. 6. Camargo CA Jr, Ganmaa D, Frazier AL, Kirchberg FF, Stuart JJ, Kleinman K, Sumberzul N, Rich-Edwards JW. Randomized trial of vitamin D supplementation and risk of acute respiratory infection in Mongolia. Pediatrics. 2012;130:e561-7. 7. Martínez-Lozano JA, Utrillas, MP, Nunez JA, Esteve AR, Gomea-Amo JL, Estelles V, Pedros R. Measurement and Analysis of Broadband UVB Solar Radiation in Spain. Photochemistry and Photobiology, 2012;88:1489–96 8. Grant WB. An ecologic study of cancer mortality rates in Spain with respect to indices of solar UV irradiance and smoking. Int J Cancer. 2007;120:1123-7. 9. Pludowski P, Holick MF, Pilz S, Wagner CL, Hollis BW, Grant WB, Shoenfeld Y, Lerchbaum E, Llewellyn DJ, Kienreich K, Soni M. Vitamin D effects on musculoskeletal health, immunity, autoimmunity, cardiovascular disease, cancer, fertility, pregnancy, dementia and mortality- a review of recent evidence. Autoimmun Rev. 2013;12:976-89. 10. Pludowski P, Karczmarewicz E, Bayer M, Carter G, Chlebna-Sokół D, Czech-Kowalska J, Dębski R, Decsi T, Dobrzańska A, Franek E, Głuszko P, Grant WB, Holick MF, Yankovskaya L, Konstantynowicz J, Książyk JB, Księżopolska-Orłowska K, Lewiński A, Litwin M, Lohner S, Lorenc RS, Lukaszkiewicz J, Marcinowska-Suchowierska E, Milewicz A, Misiorowski W, Nowicki M, Povoroznyuk V, Rozentryt P, Rudenka E, Shoenfeld Y, Socha P, Solnica B, Szalecki M, Tałałaj M, Varbiro S, Zmijewski MA. Practical guidelines for the supplementation of vitamin D and the treatment of deficits in Central Europe - recommended vitamin D intakes in the general population and groups at risk of vitamin D deficiency. Endokrynol Pol. 2013;64:319-27. 11. Hossein-Nezhad A, Holick MF. Vitamin D for Health: A Global Perspective. Mayo Clin Proc. 2013;88:720-55.


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    1. On 2014 Aug 04, Samir Ounzain commented:

      Overall a nice piece of work further extending the characterisation and identification of novel murine lncRNAs within the developing and adult heart post injury. However, sadly, a number of important publications predating the submission date of this manuscript were omitted.Specifically within introduction authors state ''Indeed, it is not yet known with certainty which lncRNAs are expressed in mouse hearts, nor have the identities of lncRNAs exhibiting 'cardiac-enriched' expression been defined''.

      These points have been addressed in previous publications and I kindly refer the authors of this manuscript and readers here on PubMed to the following important publications which were published prior to this paper being submitted. Sadly the peer review process also missed these

      1: Werber M, Wittler L, Timmermann B, Grote P, Herrmann BG. The tissue-specific transcriptomic landscape of the mid-gestational mouse embryo. Development. 2014 Jun;141(11):2325-30. doi: 10.1242/dev.105858. Epub 2014 May 6. PubMed PMID: 24803591.

      1: Ounzain S, Micheletti R, Beckmann T, Schroen B, Alexanian M, Pezzuto I, Crippa S, Nemir M, Sarre A, Johnson R, Dauvillier J, Burdet F, Ibberson M, Guigó R, Xenarios I, Heymans S, Pedrazzini T. Genome-wide profiling of the cardiac transcriptome after myocardial infarction identifies novel heart-specific long non-coding RNAs. Eur Heart J. 2014 Apr 30. [Epub ahead of print] PubMed PMID: 24786300.


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    1. On 2017 Jun 15, Feng Zhang commented:

      A number of researchers have inquired about the presence of duplicate sgRNAs (same sgRNA for more than one gene) in the GeCKOv2 library (Sanjana et al., Nature Methods 2014) and non-specific sgRNAs that have additional exact matches in the genome. We would like to further clarify the design considerations for GeCKOv2 (Supplementary Methods, Sanjana et al., Nature Methods 2014).

      For the GeCKOv2 libraries we decided to take the “best” sgRNA (i.e. with the fewest off-targets) we could find for a given gene, even if in some cases our “best” sgRNA had more than one targeting location in the genome. This was done to sample as many targets as possible and minimize false negatives, since false positives that are due to an sgRNA with more than one target or off target effects can be easily eliminated in post-screen validation experiments or through a gene-based analysis that selects hits based on the consistent effect of multiple unique sgRNAs. Regardless, each candidate obtained through a GeCKO screen needs to be validated through rigorous experimentation, including testing using new guides targeting each screen hit.

      A special example are gene families with high homology, in such cases our algorithm was not able to find a unique sgRNA targeting a constitutive exon. The approach that we took was to leave in these sgRNAs to give users the greatest range of options (and potential targets) during post-screen validation experiments. For example, in the human GeCKOv2 library, there are 5,664 non-specific sgRNAs. This works out to be ~4% of all guides in the library. Those redundant sgRNAs can always be removed computationally, following a screen, to simplify data analysis. (A table of these sgRNAs and genes targeted with multiple non-specific sgRNAs is available here: [link]). In contrast, GeCKOv1 did not include as many non-specific guides and consequently only targets a smaller number of genes.

      To clarify this and help users in their analysis we previously provided the GeCKOv2 sgRNA database with information about the number of off-target target hits (e.g. [link]). We also have provided an additional sgRNA index for both human and mouse GeCKOv2 libraries that lists only unique sgRNAs such that when multiple genes are targeted all of those are listed under gene_id [link].

      The GeCKOv2 libraries have already been successfully used by many groups to generate a number of interesting biological findings (e.g. Golden et al., Nature, 2017, Erb et al., Nature, 2017; Xu et al., PNAS, 2017; Jain et al., Science, 2016; Marcaeu et al., Nature, 2016; Zhang et al., Nature, 2016; Meitinger et al., JCB, 2016; Wallace et al., PLoS One, 2016; Parnas et al., Cell, 2015; Chen et al., Cell, 2015). In addition to GeCKOv2, there are a number of alternative libraries (e.g. Wang et al., Science, 2015; Doench et al., Nat. Biotechnol., 2016; Hart et al., Cell, 2015), including libraries that were designed to avoid duplicate sgRNAs by targeting fewer genes. A list of different libraries is available on Addgene’s pooled CRISPR libraries page: [link].

      We would like to specifically thank Joey Riepsaame and Timokratis Karamitros for recently bringing this issue to our attention. We also thank the GeCKO users who contacted us through the CRISPR Genome Engineering online forum and by email for additional helpful discussions.

      Neville E. Sanjana (nsanjana at nygenome.org)

      Ophir Shalem (shalemo at email.chop.edu)

      Joey Riepsaame (joey.riepsaame at path.ox.ac.uk)

      Timokratis Karamitros (timokratis.karamitros at zoo.ox.ac.uk)

      Feng Zhang (zhang at broadinstitute.org)

      References Cited

      Chen, S., Sanjana, N.E., Zheng, K., Shalem, O., Lee, K., Shi, X., Scott, D.A., Song, J., Pan, J.Q., Weissleder, R., et al. (2015). Genome-wide CRISPR screen in a mouse model of tumor growth and metastasis. Cell 160, 1246–1260.

      Doench, J.G., Fusi, N., Sullender, M., Hegde, M., Vaimberg, E.W., Donovan, K.F., Smith, I., Tothova, Z., Wilen, C., Orchard, R., et al. (2016). Optimized sgRNA design to maximize activity and minimize off-target effects of CRISPR-Cas9. Nat. Biotechnol. 34, 184–191.

      Erb, M.A., Scott, T.G., Li, B.E., Xie, H., Paulk, J., Seo, H.-S., Souza, A., Roberts, J.M., Dastjerdi, S., Buckley, D.L., et al. (2017). Transcription control by the ENL YEATS domain in acute leukaemia. Nature 543, 270–274.

      Golden, R.J., Chen, B., Li, T., Braun, J., Manjunath, H., Chen, X., Wu, J., Schmid, V., Chang, T.-C., Kopp, F., et al. (2017). An Argonaute phosphorylation cycle promotes microRNA-mediated silencing. Nature 542, 197–202.

      Hart, T., Tong, A., Chan, K., van Leeuwen, J., Seetharaman, A., Aregger, M., Chandrashekhar, M., Hustedt, N., Seth, S., Noonan, A., et al. (2017). Evaluation and Design of Genome-wide CRISPR/Cas9 Knockout Screens. bioRxiv.

      Jain, I.H., Zazzeron, L., Goli, R., Alexa, K., Schatzman-Bone, S., Dhillon, H., Goldberger, O., Peng, J., Shalem, O., Sanjana, N.E., et al. (2016). Hypoxia as a therapy for mitochondrial disease. Science 352, 54–61.

      Marceau, C.D., Puschnik, A.S., Majzoub, K., Ooi, Y.S., Brewer, S.M., Fuchs, G., Swaminathan, K., Mata, M.A., Elias, J.E., Sarnow, P., et al. (2016). Genetic dissection of Flaviviridae host factors through genome-scale CRISPR screens. Nature 535, 159–163.

      Meitinger, F., Anzola, J.V., Kaulich, M., Richardson, A., Stender, J.D., Benner, C., Glass, C.K., Dowdy, S.F., Desai, A., Shiau, A.K., et al. (2016). 53BP1 and USP28 mediate p53 activation and G1 arrest after centrosome loss or extended mitotic duration. J. Cell Biol. 214, 155–166.

      Parnas, O., Jovanovic, M., Eisenhaure, T.M., Herbst, R.H., Dixit, A., Ye, C.J., Przybylski, D., Platt, R.J., Tirosh, I., Sanjana, N.E., et al. (2015). A Genome-wide CRISPR Screen in Primary Immune Cells to Dissect Regulatory Networks. Cell 162, 675–686.

      Sanjana, N.E., Shalem, O., and Zhang, F. (2014). Improved vectors and genome-wide libraries for CRISPR screening. Nat. Methods 11, 783–784.

      Wallace, J., Hu, R., Mosbruger, T.L., Dahlem, T.J., Stephens, W.Z., Rao, D.S., Round, J.L., and O’Connell, R.M. (2016). Genome-Wide CRISPR-Cas9 Screen Identifies MicroRNAs That Regulate Myeloid Leukemia Cell Growth. PloS One 11, e0153689.

      Wang, T., Birsoy, K., Hughes, N.W., Krupczak, K.M., Post, Y., Wei, J.J., Lander, E.S., and Sabatini, D.M. (2015). Identification and characterization of essential genes in the human genome. Science 350, 1096–1101.

      Xu, C., Qi, X., Du, X., Zou, H., Gao, F., Feng, T., Lu, H., Li, S., An, X., Zhang, L., et al. (2017). piggyBac mediates efficient in vivo CRISPR library screening for tumorigenesis in mice. Proc. Natl. Acad. Sci. U. S. A. 114, 722–727.

      Zhang, R., Miner, J.J., Gorman, M.J., Rausch, K., Ramage, H., White, J.P., Zuiani, A., Zhang, P., Fernandez, E., Zhang, Q., et al. (2016). A CRISPR screen defines a signal peptide processing pathway required by flaviviruses. Nature 535, 164–168.


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    1. On 2014 Oct 03, Friedrich Thinnes commented:

      To finalize three-dimensional VDAC structure: Focus on Native VDAC will be indispensable

      This study, from my point of view, marks a great moment of VDAC research:

      1) It points another time to the relevance of cell membrane-standing VDAC-1 for the pathogenesis of Alzheimer´s Disease via apoptosis.

      2) It gives strong support to the cell membrane-expression, more precisely plasmalemmal lipid raft-integration of vertebrate VDAC-1. Furthermore, the data concerning the posphorylation of VDAC-1 in correlation to regulation of channel opening/closing argue in favor of its involvement in cell volume regulation and thus apoptosis. They are in line with much evidence indicating that plasmalemmal VDAC-1 forms the channel part of a volume regulated anion channel complex (VRAC/VSOAC).

      3) From here, VDAC-1 in the plasmalemma must be “fully closed” = collapsed = N-terminus accessible outside the barrel = closed for anions and cations, and there is evidence that the N-terminal part of native VDAC-1 can be reached by antibodies even in detergent solutions (Benz et al., 1992; Thinnes and Burckhardt, 2012).

      4) Applying canonical incorporation into black membranes, detergent-solubilized native phosphorylated mammalian VDAC-1 as well as recombinant channel preparations from E. coli inclusion bodies show only “open” = anion-selective = N-terminal stretch inside the barrel and “closed” = cation-selective = semi-collapsed = N-terminal stretch inside the barrel channel phenotypes (Teijido et al., 2012). “Fully closed” = collapsed = N-terminus accessible outside the barrel VDAC-1 states thus cannot be studied by this approach. The same holds true for more recent crystallization-based approaches. However, upcoming laser-based approaches may work just on native VDAC-1 in solutions; thus improvements to get detergent solubilized native VDAC preparation may pay to keep on the schedule.

      --Benz R, Maier E, Thinnes FP, Götz H, Hilschmann N (1992) Studies on human porin. VII. The channel properties of the human B-lymphocyte membrane-derived “Porin 31HL” are similar to those of mitochondrial porins, Biol. Chem. Hoppe Seyler. 373: 295–303. --Thinnes FP, Burckhardt G (2012) On a fully closed state of native human type-1 VDAC enriched in Nonidet P40. Mol Genet Metab 107: 632-633. --Teijido O, Ujwal R, Hillerdal CO, Kullman L, Rostovtseva TK, Abramson J (2012) Affixing N-terminal α-helix to the wall of the voltage-dependent anion channel does not prevent its voltage gating. J Biol Chem 287: 11437-11445.


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    1. On 2015 Nov 16, Raphael Stricker commented:

      Response to the Study of Fallon et al.

      Jyotsna S. Shah PhD, Nick S. Harris PhD

      IGeneX Reference Laboratory, Palo Alto, CA

      November 15, 2015

      The analysis of Lyme disease serologic testing by Fallon et al. [1] reported that “Specialty Lab B” had an overall Borrelia burgdorferi test specificity of 42.5%. We therefore asked Dr. Fallon to send us the key for the study samples that were tested by “Specialty Lab B”, and we reviewed the data for all positive and negative samples.

      In the study by Fallon et al., it is notable that two-tier testing endorsed by the Centers for Disease Control and Prevention (CDC) had a sensitivity of only 48.6% for patients with persistent symptoms following Lyme disease treatment, similar to the low sensitivity described in the medical literature [2]. In contrast, if both the IgM and IgG Western blot (WB) results are considered positive, 33 of 37 patients (89%) with persistent Lyme disease symptoms were positive by “Specialty Lab B” interpretation.

      “Specialty Lab B” includes bands 31 kDa (Osp A) and 34 kDa (Osp B) in its interpretation of WB results [3]. Antibodies to these proteins are present later in the disease [4] as well as in patients vaccinated with the now-defunct Osp A vaccine. In addition, “Specialty Lab B” uses two strains of B. burgdorferi (B31 and 297) to make WB strips. In strain 297, the 39 kDa antigen is well expressed [5], whereas in strain B31 expression of the 39 kDa antigen can vary between 4-50% [4, 6]. These factors may explain the higher WB sensitivity of “Specialty Lab B”.

      According to the revised interpretive criteria of “Specialty Lab B”, a WB is considered positive if two of the following six bands are reactive with patient serum: 23-25 kDa (Osp C), 31 kDa (Osp A), 34 kDa (Osp B), 39 kDa (BmpA), 41 kDa (Flagellin) and 83-93 kDa. However at position 31 kDa on the WB, a non-specific protein co-migrates with Osp A [3]. Therefore both the IgM and IgG WBs are reported as indeterminate if only bands 31 kDa and 41 kDa are present. Likewise, it is known that some viral antibodies cross-react with the 83-93 kDa B. burgorferi antigen. Therefore the IgM WB is reported as negative if only bands 41 kDa and 83-93 kDa are present, and an indeterminate IgM WB is reported if only bands 31 kDa and 83-93 kDa are present. Thus “Specialty Lab B” offers the option to retest using a recombinant Osp A antigen WB to clarify whether a positive band at 31kDa indeed represents reactivity to B. burgdorferi or not.

      “Specialty Lab B” reported a significantly higher number of “healthy” controls (23/40) as positive compared to other labs. In contrast, only one “healthy” control was positive by two-tier test criteria. Of the 23 positive “healthy” controls, three had insufficient samples for retesting and therefore were excluded from further analysis. Three control samples with bands 41 kDa and 83-93 kDa on IgM WB were considered negative. The remaining 17 samples were tested with recombinant antigen WBs. Thirteen, including two positive by CDC two-tier criteria, had B. burgdorferi-specific antibodies. Two sera with a band at 31 kDa on WB were considered negative as they did not test positive on the Osp A recombinant antigen WB. Therefore 13/37 healthy controls had B. burgdorferi specific antibodies, and only two had a false-positive WB. Thus the performance of the WB by “Specialty Lab B”, when using revised interpretation criteria and recombinant antigen WB, demonstrates a specificity of 91.7%.

      According to the study by Fallon et al. [1], the sensitivity of Lyme disease antibody testing was 48.6% in the best laboratories using CDC two-tier criteria. In an effort to improve that sensitivity, “Specialty Lab B” uses additional band criteria to raise its combined IgM and IgG WB sensitivity to 89% [3]. Considering the significant underdiagnosis of Lyme disease based on poor two-tier test sensitivity, it is important to improve this sensitivity so that clinical cases of Lyme disease will not be missed.

      Lyme serology continues to be problematic and we continue to look for ways to improve sensitivity and specificity. In particular, the specificity of the tests is problematic because people living or traveling to endemic areas can have antibodies without disease [7], and antibodies of other diseases can cross-react with B. burgdorferi antigens. Therefore analysis of clinical history and symptoms is essential for the accurate diagnosis of Lyme disease. We agree with the conclusions drawn by Fallon et al. [1] that interlaboratory variability is considerable and remains a problem in Lyme disease testing.

      References

      1.Fallon BA, Pavlicova M, Coffino SW, Brenner C. A comparison of Lyme disease serologic test results from four laboratories in patients with persistent symptoms after antibiotic treatment. Clin Infect Dis. 2014; 59:1705-10.

      2.Stricker RB, Johnson L. Lyme disease diagnosis and treatment: Lessons from the AIDS epidemic. Minerva Med 2010;101:419-25.

      3.Shah JS, Du Cruz I, Narciso W, Lo W, Harris NS. Improved sensitivity of Lyme disease Western blots prepared with a mixture of Borrelia burgdorferi strains 297 and B31. Chronic Dis Int. 2014;1:7.

      4.Ma B, Christen B, Leung D, Vigo-Pelfrey C. Serodiagnosis of Lyme borreliosis by Western immunoblot: reactivity of various significant antibodies against Borrelia burgdorferi. J Clin Microbiol.1992; 30: 370–376.

      5.Engstrom, SM, Shoop E, Johnson RC. Immunoblot interpretation criteria for serodiagnosis of early Lyme disease. J Clin Microbiol. 1995; 33: 419–427.

      6.Aguero-Rosenfeld ME, Nowakowski J, Bittker S, Cooper D, Nadelman RB, et al. Evolution of the serologic response to Borrelia burgdorferi in treated patients with culture-confirmed erythema migrans. J Clin Microbiol. 1996; 34: 1–9.

      7.Steere AC, Sikand VK, Schoen RT, Nowakowski J. Asymptomatic infection with Borrelia burgdorferi. Clin Infect Dis. 2003; 37: 528–532.

      Disclosure: RBS is a member of the International Lyme and Associated Diseases Society (ILADS) and a director of LymeDisease.org. He has no financial or other conflicts to declare. JSS and NSH are members of ILADS, and they have financial interests in IGeneX Reference Laboratory.


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    1. On 2014 Sep 23, Samir Ounzain commented:

      Very nice editorial distilling the main points from our recent study and highlighting some very interesting concepts for future consideration. I would just like to briefly address a couple of the main points.

      Hofmann and Boon rightly point out ''it would be interesting to see if exogenous overexpression of one of these transcripts could have increased the mRNA levels of their putative target genes or whether genomic context is the main determininant for enhancer activity of lncRNAs''

      This is a fascinating point that we are indeed trying to address,, and one that could have implications for future potential cardiac ''enhancer'' therapies. What we can say is it appears that the majority of enhancer templated lncRNAs, at least their -cis activity is dependant on the nascent endogenously produced transcript recruiting and activating in a ''proximity-transfer'' manner chromatin remodelling complexes. This tends to mean that exogenous over-expression is not sufficient. However examples exist of exogenous over-expression impacting upon endogenous -cis loci. A recent study specifically addressed this issue and provides an excellent experimental framework for how such experiments to test these ideas should be conducted. This group mechanistically characterised an enhancer associated lncRNA named CCAT1-L.

      1: Xiang JF, Yin QF, Chen T, Zhang Y, Zhang XO, Wu Z, Zhang S, Wang HB, Ge J, Lu X, Yang L, Chen LL. Human colorectal cancer-specific CCAT1-L lncRNA regulates long-range chromatin interactions at the MYC locus. Cell Res. 2014 Sep;24(9):1150. doi: 10.1038/cr.2014.117. PubMed PMID: 25174407; PubMed Central PMCID: PMC4152739.

      Finally Hofmann and Boon ask whether ''enhancer RNAs functionally affects the response to cardiac stress in a disease model like acute myocardial infarction''. This is a major questions ourselves and others in the community are trying to address using various strategies. We do suspect that considering the unique context and tissue specific expression profiles of enhancer associated lncRNAs, they would represent ideal specific therapeutic targets for ''enhancer-therapy'' type approaches post acute cardiac stress. We look forward to see how these concepts will emerge and evolve in the coming years.

      Finally it is worth noting that many adult heart specific lncRNAs are also associated with adult heart specific active enhancer sequences. Furthermore, heart specific lncRNAs associated with such enhancers are preferentially modulated post myocardial infarction in the mouse, implicating them in the global enhancer reprogramming that underpins maladaptive cardiac remodelling. More on this can be found ...

      Ounzain S, Micheletti R, Beckmann T, Schroen B, Alexanian M, Pezzuto I, Crippa S, Nemir M, Sarre A, Johnson R, Dauvillier J, Burdet F, Ibberson M, Guigó R, Xenarios I, Heymans S, Pedrazzini T. Genome-wide profiling of the cardiac transcriptome after myocardial infarction identifies novel heart-specific long non-coding RNAs. Eur Heart J. 2014 Apr 30. [Epub ahead of print] PubMed PMID: 24786300.


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    1. On 2015 Sep 17, Ghassan El-Baalbaki commented:

      authors of this comment are: Loose, T.<sup>1,3</sup> , Ashrah, L.<sup>1,</sup> Romero, M.<sup>1,</sup> Bégin, J.<sup>1</sup> and El-Baalbaki, G.<sup>1,2</sup> Affiliations, Université du Québec À Montréal<sup>1,</sup> McGill University<sup>2,</sup> Université de Nantes<sup>3</sup> .

      In this study, the authors examine the efficacy of Acceptance and Commitment Therapy (ACT) in treating partner aggression. After entering into communication with the first author, she confirmed that this study corresponds to her doctoral thesis (Zarling, 2013). We read her thesis in order to gain further knowledge about the published study, and we found two important aspects of the work that need to be brought into light: 1) we find it difficult to conclude that partner aggression was specifically reduced, because of threats to internal validity. 2) There seems to be inaccuracies in their statistical calculations.

      The primary objective was to demonstrate that ACT reduces intimate partner aggression better than the placebo control group. The authors strongly suggest that ACT was indeed able to do so. However, several points call this statement into question.

      First of all, it is worth noting that partner aggression is never specifically assessed. One may think that the Conflict Tactics Scales-2-Physical Assault Scale (CTS-2) did assess this construct (Straus, Hamby, Boney-McCoy & Sugarman, 1996), but when taking into account the exact content of the administered questionnaire that was figured in her thesis, it can be seen that the instructions were modified in order to include aggression towards “people we care about” (Zarling, 2013, p.132) instead of specifically towards a partner. This modification is not mentioned in the published article. Hence, participants could have hypothetically committed aggressive acts exclusively towards a non-partner, such as a child or a friend. It is thus hard to conclude that aggressive behavior, specifically among couples, decreased as a result of therapy.

      Furthermore, after modifying the instructions, one of the items even became incoherent. More specifically, when taking into the modified instructions of the questionnaire, the item stated “When upset or in a disagreement with someone you care about … have you became angry enough to frighten your partner?” (italics added)(Zarling, 2013, p. 132). It seems that this question was destined to ask if the participant became angry enough to frighten someone that they « care about » and not their « partner ». For example, if the participants were (or became) single, they could have interpreted this question as if they were angry enough to frighten someone that is not necessarily their partner. It is unclear how the authors wanted the participants to interpret this item. The way that the construct of partner aggression was assessed calls into question the internal validity of the study.

      It remains questionable why the authors neglected to assess attrition of couples during the study. Over the course of the study, it is possible that aggressive behavior decreased more in the ACT group as a result of more couples breaking up in this treatment condition than in the placebo control group. Even if the authors carried out both completer analysis and intent to treat analysis and the results did not differ on measured variables, the attrition of couples was not measured. Hence, it is impossible to know if the groups differed on partner attrition. It remains possible that participants continued to aggress former partners, but again this cannot be asserted simply because it was not measured. Assessing partner attrition would have helped neutralize a pertinent threat to internal validity. Hence, internal validity was limited by not taking into account partner attrition.

      Lastly, it is worth bringing up that the first author and two other investigators co-led all administered interventions (p. 201). Even if the authors state this in their article, after looking at the detailed explanation of the recruitment process of investigators, this choice does not seem to be justified. It seems that the first author was able to recruit investigators at no extra cost and it is questionable as to why she did not recruit three instead of two, thus avoiding a potential threat to internal validity. The explanation provided in her thesis, but not the article, also states that all the manipulation checks were carried out by the first author and supervised by the second and third authors (Zarling, 2013, p.61). Because of the implication of the authors in the experimental procedure, the results are potentially attributable to the experimenter expectancy effect. This is another threat to internal validity that evokes the tendency for researchers to unintentionally bias the results of their investigations in accord with their hypotheses. In taking into account the previously stated points, it seems difficult to conclude that this study shows that ACT specifically reduces partner aggression better than a placebo control group.

      On another note, the statistical validity of the study can be questioned:

      Throughout the results section of the paper (pp. 205–207), the authors report many beta values (β) for intercepts and slopes. If these are indeed beta values, they should vary between approximately 1 and -1 (Cohen, Cohen, West & Aiken, 2002). However in many cases, reported values are outside of this range. For example the authors state “The ACT participants also reported significantly less psychological aggression, β = 2.05, SE = 0.71, t(97) = 8.33, p < .001, and physical aggression, β = 2.21, SE = 0.65, t(97) = 8.19, p < .001, at the 6-month follow-up assessment” (p. 8). This leads us to think that the authors are actually reporting non-standardized coefficients (B) because B values can vary outside of this range. However, if this is the case, then the t values reported become incoherent. t values should equal B/(2SE) (we retained the value of 2 after rounding up from 1.96 which corresponds to 95% of a normal distribution (Christensen, 1986)), but reported t values do not correspond to this calculation. For example, let’s take another look at the previous citation and assume that it actually refers to B values. According to our calculations, t = B/(2SE) = 2.05/(2*0.71)=1.44, but the authors report that t = 8.33, p < .001. More simply stated,if the authors are indeed reporting β values, then many of the β values seem to be impossible (outside of the ± 1 range), but if they are reporting B values, the t values seem to be impossible according to our calculations. We were wondering how these seemingly paradoxical results could be explained.

      In conclusion, even if this research topic is of great interest, two main points should to be taken into account. First of all, it is hard to state that ACT is an effective treatment to reduce partner aggression because 1) partner aggression was never specifically assessed 2) partner attrition was not measured 3) of potential bias due to the experimenter expectancy effect. Secondly, it is hard to draw conclusions from the statistics figured in the study because 1) if β values were indeed being reported, then they lie outside of the ± 1 range and 2) if B values were actually reported, then the t values become incoherent.

      References

      Christensen, H. B. (1986). La statistique: démarche pédagogique programmée. Boucherville: Gaëtan Morin.

      Cohen, J., Cohen P., West, S. G. et Aiken, L. S. (2002). Applied multiple regression/correlation analysis for the behavioral sciences. New York: Routledge.

      Straus, M. A., Hamby, S. L., Boney-McCoy, S., & Sugarman, D. B. (1996). The revised conflict tactics scales (CTS2): Development and preliminary psychometric data. Journal of Family Issues, 17, 283–316.

      Zarling, A. (2013). A preliminary trial of ACT skills training for aggressive behavior. University of Iowa.


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    1. On 2015 Aug 17, Alem Matthees commented:

      In response to post-publication feedback, I wish to clarify some aspects of the abstract, so there are no further misunderstandings about the scope and content in the full text of this article:

      a) Classification and naming issues aside, ME/CFS occurs at all ages, including young children and adolescents. [1] I never intended to suggest otherwise. The statement about patients being almost exclusively of working age was in context of research cohorts, particularly intervention trials which typically exclude patients under 18 years of age and rarely recruit those over 65 years. It is argued that studies consisting of such cohorts should not use normative data from general populations which include the elderly.

      b) The physical function subscale of the Short Form 36 health survey (PF SF-36) is discussed because it is a commonly used measure in research and was used in the PACE trial. This article is not a defence of the PACE trial, but uses it to exemplify how the issues described earlier in the article can cause normative data to be misinterpreted or misapplied. Selected details on this issue can be found in an BMJ Rapid Response (open-access) which does not require subscription to view. [2]

      c) This article is not meant to be a comprehensive analysis of recovery or case definitions, it is simply a commentary which focuses on using normative data from other comparison groups, one of the issues raised in the review by Adamowicz et al. [3] It explores the appropriate control groups or comparison populations, highlights a problem with using the mean ±1 SD as a threshold if the data does not follow a normal distribution, includes some summary statistics, mentions statistical testing at the group level, and encourages researchers to publish enough information so that others can accurately estimate the functional status of participants. Subjective self-reported measures are important but have potential biases (particularly in nonblinded trials lacking placebo control). Objective measures are also important, particularly when assertions that the intervention is effective at increasing function and activity are contradicted by a range of objective measures. See commentaries by Twisk [4] and others. [5-7]

      References

      1: Bakken IJ, Tveito K, Gunnes N, Ghaderi S, Stoltenberg C, Trogstad L, Håberg SE, Magnus P. Two age peaks in the incidence of chronic fatigue syndrome/myalgic encephalomyelitis: a population-based registry study from Norway 2008-2012. BMC Med. 2014 Oct 1;12:167. doi: 10.1186/s12916-014-0167-5. PMID 25274261. http://www.ncbi.nlm.nih.gov/pmc/articles/pmid/25274261

      2: Matthees A. Re: Tackling fears about exercise is important for ME treatment, analysis indicates. BMJ Rapid Response, 21 January 2015. http://www.bmj.com/content/350/bmj.h227/rr-16

      3: Adamowicz JL, Caikauskaite I, Friedberg F. Defining recovery in chronic fatigue syndrome: a critical review. Qual Life Res. 2014 Nov;23(9):2407-16. doi: 10.1007/s11136-014-0705-9. Epub 2014 May 3. PMID: 24791749. http://link.springer.com/article/10.1007/s11136-014-0705-9

      4: Twisk FN. A definition of recovery in myalgic encephalomyelitis and chronic fatigue syndrome should be based upon objective measures. Qual Life Res. 2014 Nov;23(9):2417-8. doi: 10.1007/s11136-014-0737-1. Epub 2014 Jun 17. PMID: 24935018. http://link.springer.com/article/10.1007/s11136-014-0737-1

      5: Kindlon TP. Objective measures found a lack of improvement for CBT & GET in the PACE Trial: subjective improvements may simply represent response biases or placebo effects in this non-blinded trial. BMJ Rapid Response, 18 January 2015. http://www.bmj.com/content/350/bmj.h227/rr-10

      6: Wilshire CE. Re: Tackling fears about exercise is important for ME treatment, analysis indicates. BMJ Rapid Response, 19 January 2015. http://www.bmj.com/content/350/bmj.h227/rr-7

      7: Faulkner G. In non-blinded trials, self-report measures could mislead. Lancet Psychiatry. Volume 2, No. 4, e7, April 2015. doi: 10.1016/S2215-0366(15)00089-9 http://www.thelancet.com/journals/lanpsy/article/PIIS2215-0366(15)00089-9/fulltext


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    1. On 2014 Oct 21, Carl L von Baeyer commented:

      Potentially a very important finding. However, it should be read with caution. Table 2 indicates a range of 6-8 for VAS. This is problematic in four ways: (a) VAS is not listed among the measures, which were a faces scale and a numerical rating scale. (b) Perhaps what is meant by "VAS" is actually a combination of scores on the faces scale and the numerical rating scale. But these different scales cannot be combined as if they were the same thing. They should be reported separately unless a rationale is provided for treating them as the same. (c) The idea that ALL 82 subjects with a chronic illness used only the scores 6, 7 or 8 (out of the 11 scores available on the self-report scale) is not plausible: this would represent an extraordinarily unlikely restriction of range on the 0-10 metric, or else there was some bias in the way the question was asked. (d) If all scores were 6, 7 or 8, then the mean could not have been greater than 8 as reported in the abstract. I'd invite the authors to check this line of Table 2 before the paper is finalized. Thank you.


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    1. On 2015 Mar 16, David Ayoub commented:

      That Contreras et al1 failed to report an association between vitamin D deficiency (VDD) and fracture risk is surprising in light of nearly a century of research linking vitamin D to bone health. We would like to suggest that study design limitations might have obscured such a potential relationship.

      While fractures are a well-known complication of rickets/osteomalacia their association with subclinical forms of deficiency is less well established. The prevalence of fractures in rickets varies but typically found in a minority of individuals suffering from the disease. In a review of vitamin D and skeletal health in children, Moon et al recently summarized 17 modern studies of rickets. Fractures were observed in 13 of these studies among 1,177 children. The average fracture prevalence was 6% with a range between 0% and 20%. Only 2 studies involved a similar aged subset as reported by Contreras. Agarwal and Gulati reported a 6% fracture prevalence in 10-13 y/o children in India. Narchi et al reported no fractures among 10-15 year olds with rickets in Saudi Arabia. A comparison of fracture rates among vitamin D sufficient vs. deficient individuals would therefore require an adequately large sample size ideally in prospective studies. Contreras’ alternative approach that compared VDD rates among those with fractures and non-injured cohorts introduces several potential confounders.

      Bone failure, especially with minor trauma, is considered to be a stochastic event – one associated with probabilities – caused by the interplay of various extrinsic (force/load) and intrinsic (bone strength) factors. Intrinsic factors put genetically susceptible individuals at risk for fractures when exposed to the random forces of trauma. The genetic component has been reported to be the most important intrinsic factor associated with bone failure. Other risk factors include, but are not limited to decreased bone loading, illness, various endocrine and nutritional conditions, medications, physiologic alterations associated with bone turnover, and growth spurts. Designing a population-based study to isolate the role of VDD in fractures would be nearly impossible unless other major determinants that effect bone quality and fracture risk are controlled.

      Contreras provides little detail of the nature of forces applied to the 100 fracture cases. Even if vitamin D deficiency was the major contributor to diminished bone strength, a force is still required to produce a fracture. Contreras’ fracture group could have had other confounding conditions that affected bone strength, including familial predispositions that adversely influenced bone quality. Since forces vary considerably it is certain that some fractures would occur regardless of bone strength. The fact that 63% of cases with fractures following “minor” trauma had inadequate vitamin D levels would raise concern that diminished bone strength may have contributed to injury in some children.

      It is possible that Contreras’ control population, similarly suffering from VDD ubiquitous to the general population, also had compromised bone strength and differed only from controls by having the good fortune of avoiding a significant accident. It would have been more ideal to choose a control group strictly comprised of children suffering traumatic injuries but without fractures instead of a group that included various acute medical conditions. In this scenario, all subjects of both groups would have been exposed to physical forces that would have challenged bone integrity. It is possible that their control group of emergency room patients without fractures suffered from conditions associated with higher rates of VDD and thus neutralizing any potential difference in vitamin D status from the fracture group.

      In addition to Ryan, there are several more studies that did report an association between vitamin D and fractures. Ruohola et al reported a strong association between lower vitamin D levels and stress fractures among 800 randomly selected and prospectively followed young military recruits. Leboff et al reported lower mean vitamin D levels in women with postmenopausal hip fractures compared to two groups of postmenopausal women prior to elective hip replacements. In a nested case-control study of 1200 female Naval recruits Burgi et al reported increased risk of stress fractures among those who were vitamin D deficient. There was approximately half the risk of stress fractures in women in the top vs. the bottom quintile of vitamin D concentration. While we agree that one cannot say that vitamin D status alone could predict who will fracture, these alternatively designed studies suggest that it can identify an at-risk population.

      Lastly, but perhaps of greater importance is the extraordinary rate (63%) of inadequate vitamin D status among Contreras’ emergency room-attended population. This observation alone deserves the full attention of local physicians and public health officials and goes far beyond the original mission of their study.

      REFERENCES 1. Contreras JJ, Hiestand B, O'Neill JC, Schwartz R, Nadkarni M. Vitamin D deficiency in children with fractures. Pediatr Emerg Care. 2014;30(11):777-781. 2. Moon RJ, Harvey NC, Davies JH, Cooper C. Vitamin D and skeletal health in infancy and childhood. Osteoporos Int. 2014;25(12):2673-2684. 3. Agarwal A, Gulati D. Early adolescent nutritional rickets. J Orthop Surg (Hong Kong). 2009;17(3):340-345. 4. Narchi H, El Jamil M, Kulaylat N. Symptomatic rickets in adolescence. Arch Dis Child. 2001;84(6):501-503. 5. Ferrari S, Chevalley T, Bonjour JP, Rizzoli R. Genetic determinants of bone microstructure and fracture risk in childhood. Bone. 2007;40(3)(suppl 1):S12. 6. Melamed ML, Kumar J. Low levels of 25-hydroxyvitamin D in the pediatric populations: prevalence and clinical outcomes. Ped Health. 2010;4(1):89-97. 7. Ryan LM. Forearm fractures in children and bone health. Curr Opin Endocrinol Diabetes Obes. 2010;17(6):530-534. 8. Ruohola JP, Laaksi I, Ylikomi T, et al. Association between serum 25(OH)D concentrations and bone stress fractures in Finnish young men. J Bone Miner Res. 2006;21(9):1483-1488. 9. LeBoff MS, Kohlmeier L, Hurwitz S, Franklin J, Wright J, Glowacki J. Occult vitamin D deficiency in postmenopausal US women with acute hip fracture. JAMA. 1999;281(16):1505-1511. 10. Burgi AA, Gorham ED, Garland CF, et al. High serum 25-hydroxyvitamin D is associated with a low incidence of stress fractures. J Bone Miner Res. 2011;26(10):2371-2377.


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    1. On 2015 Oct 22, Horacio Rivera commented:

      A de novo inv dup(1) turns out to be a rea(1)dup q chromosome I remark that the de novo mosaic 1q32→qter duplication onto 1pter (concomitant with a normal clone) described by Levy et al. [2015] is not an inverted duplication because direct and inverted duplications are officially defined as “a gain of a chromosomal segment observed at the original chromosome location” [Shaffer et al., 2013], not to mention that the orientation of the extra segment was indeed a direct one. It is significant that in their discussion, Lévy et al. [2015] refer to three other similar chromosome-1 rearrangements entailing an 1q duplication (although none with interstitial telomeric repeats) and visualize them as “recombinants” from an hypothetical pericentric inversion. In this regard, a compilation of 104 recombinant-like chromosomes of de novo or sporadic occurrence [Rivera et al., 2013] lists 11 other comparable chromosome-1 composites entailing dup q/del p but without an interstitial telomere. To avoid a nonsensical “der vs rec” controversy, we have designated such rearranged chromosomes with the official term rea coupled with the lengthy description of the novel composite [Rivera et al., 2013]. In that paper, we pointed out that “this formula makes no causal assumptions, unambiguously describes the rearranged chromosome, allows for a meiotic or mitotic origin, and is consistent with the involvement of 1 or 2 homologs”. Moreover, the term rea had already been used for this purpose [Thomas et al., 2006] and properly describes a rearranged unbalanced chromosome mimicking a recombinant ensued from a pericentric inversion as it is epitomized by the rea(1)(qter→q32::pter→qter) here alluded to. It goes without saying that inv dup is also improperly used to designate mirror structures such as isodicentrics and neocentric isofragments [e.g., Warburton et al., 2000]. Although Lévy et al. [2015] recognized that “[T]he recurrent nature of all these similar recombinants, including our dup(1q), suggests an identical mechanism of formation”, they failed to identify it. According to D’Angelo et al. [2009], who analyzed in fine detail two dup q/del p and two other comparable chromosome-1 rearrangements, the DNA repair mechanism of non-homologous end joining (NHEJ) appears to be “the pathway in the formation of these de novo nonreciprocal translocations, because of the lack of evidence to support a homology-based recombination mechanism”. Yet, the location in unique, non-repetitive DNA sequences of all the breakpoints in the four chromosome-1 rearrangements above mentioned [D’Angelo et al., 2009] may call into question the NHEJ mechanism for rearranged chromosomes with an interstitial telomere alike to the exceptional rea(1) documented by Lévy et al. [2015]. Because Lévy et al. [2015] also omitted some relevant references on other rearrangements with interstitial telomeres, I reiterate here the academic and moral duty that authors, reviewers, editors, and readers have to improve the current citation practices [Rivera, 2014]. Finally, I stress that seven months ago a Letter to the Editor with these comments was judged unacceptable by the concerned journal because “the conclusions of Dr. Levy's paper are really not about terminology and nomenclature”. REFERENCES D’Angelo CS, Gajecka M, Kim CA, Gentles AJ, Glotzbach CD, Shaffer LG, Koiffmann CP. 2009. Further delineation of nonhomologous-based recombination and evidence for subtelomeric segmental duplications in 1p36 rearrangements. Hum Genet 125:551-563. Lévy J, Receveur A, Jedraszak G, Chantot-Bastaraud S, Renaldo F, Gondry J, Andrieux J, Copin H, Siffroi J-P, Portnoï M-F. 2015. Involvement of interstitial telomeric sequences in two new cases of mosaicism for autosomal structural rearrangements. Am J Med Genet Part A 167A:428-433. Rivera H. Commentary: peer review and incomplete reference lists. 2014. Account Res 21:138-141. Rivera H, Domínguez MG, Vásquez-Velásquez AI, Lurie IW. 2013. De novo dup p/del q or dup q/del p rearranged chromosomes: review of 104 cases of a distinct chromosomal mutation. Cytogenet Genome Res 141: 58-63. Shaffer LG, McGowan-Jordan J, Schmid M. 2013. ISCN 2013: an international system for human cytogenetic nomenclature (2013), Basel, S Karger. p. 69. Thomas NS, Durkie M, Van Zyl B, Sanford R, Potts G, Youings S, Dennis N, Jacobs P. 2006. Parental and chromosomal origin of unbalanced de novo structural chromosome abnormalities in man. Hum Genet 119: 444-450. Warburton PE, Dolled M, Mahmood R, Alonso A, Li S, Naritomi K, Tohma T, Nagai T, Hasegawa T, Ohashi H, Govaerts LC, Eussen BH, Van Hemel JO, Lozzio C, Schwartz S, Dowhanick-Morrissette JJ, Spinner NB, Rivera H, Crolla JA, Yu C, Warburton D. 2000. Molecular cytogenetic analysis of eight inversion duplications of human chromosome 13q that each contain a neocentromere. Am J Hum Genet 66:1794-1806.


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    1. On 2015 Jan 07, Mohammad Salman commented:

      I'm surprised by the findings of this paper since several authors have reported antiinflammatory effects of Thymoquinone and inhibition of COX-2 and PGE2 via Thymoquinone. See:

      1: Kundu JK, Liu L, Shin JW, Surh YJ. Thymoquinone inhibits phorbol ester-induced activation of NF-κB and expression of COX-2, and induces expression of cytoprotective enzymes in mouse skin in vivo. Biochem Biophys Res Commun. 2013 Sep 6;438(4):721-7. doi: 10.1016/j.bbrc.2013.07.110. Epub 2013 Aug 1. PubMed PMID: 23911786.

      2: Al Wafai RJ. Nigella sativa and thymoquinone suppress cyclooxygenase-2 and oxidative stress in pancreatic tissue of streptozotocin-induced diabetic rats. Pancreas. 2013 Jul;42(5):841-9. doi: 10.1097/MPA.0b013e318279ac1c. PubMed PMID: 23429494.

      3: El Mezayen R, El Gazzar M, Nicolls MR, Marecki JC, Dreskin SC, Nomiyama H. Effect of thymoquinone on cyclooxygenase expression and prostaglandin production in a mouse model of allergic airway inflammation. Immunol Lett. 2006 Jul 15;106(1):72-81. Epub 2006 May 22. PubMed PMID: 16762422.

      4: Marsik P, Kokoska L, Landa P, Nepovim A, Soudek P, Vanek T. In vitro inhibitory effects of thymol and quinones of Nigella sativa seeds on cyclooxygenase-1- and -2-catalyzed prostaglandin E2 biosyntheses. Planta Med. 2005 Aug;71(8):739-42. PubMed PMID: 16142638.


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    1. On 2016 Jul 01, Nicholas J L Brown commented:

      Our reanalysis of the data from the article by Vedhara et al. (2015) showed that their results are fragile and ambiguous and depend on (a) the inclusion or exclusion of two study participants missing values for one of the control variables and (b) the accumulation of statistical suppression effects in the regression analyses. See 10.1016/j.paid.2015.11.055.


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    1. On 2015 Jan 07, William Grant commented:

      Differences in 25-hydroxyvitamin D concentrations may explain some of the black-white disparity in endometrial cancer prevalence in the United States

      The paper by Cote and colleagues examined risk factors for endometrial cancer in an effort to determine the cause of higher rates for blacks than for whites [1]. Overlooked in this paper was any discussion of the possible role of solar UVB exposure and vitamin D in reducing risk. This comment presents the evidence for solar UVB exposure in reducing risk of endometrial cancer, with the most likely mechanism being production of vitamin D.

      Geographical ecological studies provide the best evidence that solar UVB exposure reduces risk of endometrial cancer. An ecological study in the U.S. found a significant inverse correlation between July solar UVB doses and endometrial cancer mortality rates for white women in a multifactorial analysis [2]. (Maps of endometrial and other cancer mortality rates can be generated at http://ratecalc.cancer.gov/. A map of solar UVB doses for July 1992 can be found at www.sunarc.org. The maps for endometrial cancer for black women do not show the inverse correlation with respect to solar UVB doses, although there is a hint in that mortality rates are lowest in the southwest and higher in the east; the higher mortality rates in the southeast could be related to diet as well.) Ecological studies have also found inverse correlations between solar UVB and endometrial cancer in Spain [3] and France [4]. A study in Sweden found that women who used sunbeds or sunbathed in summer had significantly reduced risk of developing endometrial cancer [5].

      The role of vitamin D in reducing risk of cancer in general is discussed in Ref. 6. In the U.S., the mean 25-hydroxyvitamin D [25(OH)D] concentrations for elderly black women in 2001-4 was 15 ng/mL while that for elderly white women was 25 ng/mL [7]. This difference was proposed as the explanation for black-white disparities in cancer survival rates after consideration of socioeconomic status, stage at diagnosis and treatment for 13 types of cancer including endometrial cancer [8]. Obesity, identified as a risk factor for endometrial cancer in Ref. 1, lowers 25(OH)D concentrations, and has been evaluated as a contributing risk factor for breast cancer in terms of lowering 25(OH)D concentrations [9]. However, it is noted that there is little direct evidence that vitamin D lowers risk of endometrial cancer [10]. On the other hand, there is a recent mouse model study of intestinal tumor growth and progression to malignancy finding that raising 25(OH)D concentrations to about 30 ng/mL by UVB exposure was more effective than doing the same with oral vitamin D [11].

      Thus, women wishing to reduce their risk of endometrial cancer could consider spending more time in the sun, especially during midday when the UVB doses are highest, but not so long as to develop erythema, and taking vitamin D3 to raise 25(OH)D concentrations to 30-40 ng/mL.

      References 1. Cote ML, Alhajj T, Ruterbusch JJ, Bernstein L, Brinton LA, Blot WJ, Chen C, Gass M, Gaussoin S, Henderson B, Lee E, Horn-Ross PL, Kolonel LN, Kaunitz A, Liang X, Nicholson WK, Park AB, Petruzella S, Rebbeck TR, Setiawan VW, Signorello LB, Simon MS, Weiss NS, Wentzensen N, Yang HP, Zeleniuch-Jacquotte A, Olson SH. Risk factors for endometrial cancer in black and white women: a pooled analysis from the epidemiology of endometrial cancer consortium (E2C2). Cancer Causes Control. 2014 Dec 23. [Epub ahead of print] 2. Grant WB, Garland CF. The association of solar ultraviolet B (UVB) with reducing risk of cancer: multifactorial ecologic analysis of geographic variation in age-adjusted cancer mortality rates. Anticancer Res. 2006;26(4A):2687-99. 3. Grant WB. An ecologic study of cancer mortality rates in Spain with respect to indices of solar UV irradiance and smoking. Int J Cancer. 2007;120(5):1123-7. 4. Grant WB. An ecological study of cancer incidence and mortality rates in France with respect to latitude, an index for vitamin D production. Dermatoendocrinol. 2010;2(2):62-7. 5. Epstein E, Lindqvist PG, Geppert B, Olsson H. A population-based cohort study on sun habits and endometrial cancer. Br J Cancer. 2009;101(3):537-40. 6. Moukayed M, Grant WB. Molecular link between vitamin D and cancer prevention. Nutrients. 2013;5(10):3993-4023. 7. Ginde AA, Liu MC, Camargo CA Jr. Demographic differences and trends of vitamin D insufficiency in the US population, 1988-2004. Arch Intern Med. 2009;169(6):626-32. 8. Grant WB, Peiris AN. Differences in vitamin D status may account for unexplained disparities in cancer survival rates between African and White Americans. Dermatoendocrinol. 2012;4(2):85-94. 9. Lagunova Z, Porojnicu AC, Grant WB, Bruland Ø, Moan JR. Obesity and increased risk of cancer: Does decrease of serum 25-hydroxyvitamin D level with increasing body mass index explain some of the association? Molec Nutr Food Res. 2010;54(8):1127-33. 10. Liu JJ, Bertrand KA, Karageorgi S, Giovannucci E, Hankinson SE, Rosner B, Maxwell L, Rodriguez G, De Vivo I. Prospective analysis of vitamin D and endometrial cancer risk. Ann Oncol. 2013;24(3):687-92. 11. Rebel H, der Spek CD, Salvatori D, van Leeuwen JP, Robanus-Maandag EC, de Gruijl FR.UV exposure inhibits intestinal tumour growth and progression to malignancy in intestine-specific Apc mutant mice kept on low vitamin D diet. Int J Cancer. 2015;136(2):271-7.

      Disclosure I receive funding from Bio-Tech Pharmacal (Fayetteville, AR) and MediSun Technology (Highland Park, IL).


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    1. On 2015 Jan 06, Anthony Michael commented:

      Polyamine-replete rich growth medium Tryptic Soy Broth (TSB) has been used in this study for all growth and biofilm analyses. TSB contains extract from soybean, a leguminous plant closely related to alfalfa (Medicago sativa). Alfalfa is known to contain norspermidine (Rodriquez-Garay et al., 1989, “Detection of norspermidine and norspermine in Medicago sativa L. (Alfalfa)”, Plant Physiol 89(2): 525-9 Rodriguez-Garay B, 1989). The authors claim that the cell-free supernatant of the Staphylococcus epidermidis cell culture after 40 hours of growth contains self-produced norspermidine at a concentration of 326.7 micromolar. Presumably the conclusion that the norspermidine is self-produced is due to the fact that norspermidine was not detected in the supernatant after 4 hours of growth. However, no molecules were detected in the supernatant after four hours of growth, even though the growth medium is a complex rich medium (Fig. 2C). As no sequenced Staphylococcus species encodes either carboxynorspermidine dehydrogenase and carboxynorspermidine decarboxylase, or S-adenosylmethionine decarboxylase and spermidine synthase to make norspermidine or spermidine, respectively, the claim that S. epidermidis synthesizes norspermidine would be convincing only if the growth and biofilm experiments had been performed with a polyamine-free, chemically-defined growth medium.


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    1. On 2015 Jan 09, William Grant commented:

      Differences in vitamin D status may help explain the black-white disparities in breast cancer survival rates

      The paper by Coughlin discussed some of the reasons for black-white disparities in breast cancer survival [1]. Overlooked in that discussion was any mention of the role of vitamin D from solar UVB exposure and oral vitamin D intake in reducing breast cancer risk and increasing survival rates. Geographical ecological studies in the U.S. and elsewhere have found significant inverse correlations between solar UVB indices and incidence and/or mortality rates of breast cancer [2, 3] as well as many other types of cancer [3]. An important reason why black women in the U.S. have a greater risk of dying from breast cancer is that due to darker skin pigmentation, they have 25-hydroxyvitamin D [25(OH)D] concentrations about 40% lower than white women [4]. In a review of black-white disparities in cancer survival rates for 13 types of cancer, it was found that after consideration of socioeconomic status, stage at diagnosis, and treatment, blacks an average of 25% (0% to 50+%) increased relative risk of dying after diagnosis of cancer than did whites [5]. There are many other health outcomes for which blacks have poorer outcomes than whites, including cardiovascular disease and diabetes mellitus [6]. Both of these diseases have been linked to low 25(OH)D concentrations in observational studies [7,8]. Thus, any intervention programs for addressing breast cancer disparities among African American women should consider including information about the health benefits of solar UVB exposure and vitamin D supplementation to increase 25(OH)D concentrations to above 30-40 ng/mL [9].

      References 1. Coughlin SS. Intervention approaches for addressing breast cancer disparities among African American women. Ann Transl Med Epidemiol. 2014 Sep 8;1(1). pii: 1001. 2. Grant WB. Lower vitamin-D production from solar ultraviolet-B irradiance may explain some differences in cancer survival rates. J Natl Med Assoc. 2006;98(3):357-64. 3. Moukayed M, Grant WB. Molecular link between vitamin D and cancer prevention. Nutrients. 2013;5(10):3993-4023. 4. Ginde AA, Liu MC, Camargo CA Jr. Demographic differences and trends of vitamin D insufficiency in the US population, 1988-2004. Arch Intern Med. 2009;169(6):626-32. 5. Grant WB, Peiris AN. Differences in vitamin D status may account for unexplained disparities in cancer survival rates between African and White Americans. Dermatoendocrinol. 2012;4(2):85-94. 6. Grant WB, Peiris AN. Possible role of serum 25-hydroxyvitamin D in Black–White health disparities in the United States. J Am Med Directors Assoc. 2010;11(9):617-28. 7. Wang L, Song Y, Manson JE, et al. Circulating 25-hydroxy-vitamin D and risk of cardiovascular disease: A meta-analysis of prospective studies. Circ Cardiovasc Qual Outcomes. 2012;5(6):819-29. 8. Song Y, Wang L, Pittas AG, et al. Blood 25-hydroxy vitamin D levels and incident type 2 diabetes: a meta-analysis of prospective studies. Diabetes Care. 2013;36(5):1422-8. 9. Holick MF, Binkley NC, Bischoff-Ferrari HA, et al. Evaluation, treatment, and prevention of vitamin D deficiency: an Endocrine Society Clinical Practice Guideline. J Clin Endocrinol Metab, 2011;96(7):1911-30.

      Disclosure I receive funding from Bio-Tech Pharmacal (Fayetteville, AR) and MediSun Technology (Highland Park, IL).


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    1. On 2015 Jan 28, William Grant commented:

      Vitamin D does reduce risk of upper respiratory infections!

      The paper by Yawn and colleagues reported that the evidence for vitamin D for the treatment of respiratory diseases was weak since random controlled trials (RCTs) have not supported the observational studies finding inverse correlations between 25-hydroxyvitamin D [25(OH)D] concentrations and incidence of respiratory diseases [1]. However, the analysis of the RCTs and the literature search were not conducted well.

      There have been two vitamin D RCTs that demonstrated a beneficial effect in reducing risk of influenza. The first was conducted on black post-menopausal women living on Long Island. Those taking 800 or 2000 IU/d vitamin D3 had significantly lower incidence of colds and influenza than those taking the placebo [2]. However, the same research group conducted a second vitamin D RCT on a similar group without finding a beneficial effect as noted in Ref. 1 [3]. The primary difference between the two trials was the baseline 25(OH)D concentration. As reported in Ref. 3, in the first one, it was 46.9±20.6 nmol/l (95% CI 43.9–50.39) while in the second one it was 64.3±25.4 nmol/L. The second was a vitamin D RCT conducted on school children in Japan. For those not taking vitamin D prior to entering the trial, there was a 64% reduction in incidence of type A influenza for those taking 1200 IU/d vitamin D3 compared to the placebo [4].

      Another vitamin D RCT overlooked was conducted in Mongolia. In this study, school children with mean baseline 25(OH)D concentration of 7.0 (5.0–9.9) ng/mL (to convert ng/mL to nmol/L, divide by 2.5). were given 300 IU/d vitamin D3 which raised 25(OH)D concentration to 18.9 (15.5–22.9) ng/mL [5]. A significant reduction in acute respiratory infections was found.

      Two negative studies were reviewed in Ref. 1. A study from New Zealand started with a baseline 25(OH)D concentration of 29 (SD, 9) ng/mL, achieved a 25(OH)D concentration of 48 ng/mL, and found no beneficial effect [6]. Another vitamin D RCT followed two groups, each with mean baseline 25(OH)D concentration near 25 ng/mL and achieved 25(OH)D concentration near 32 ng/mL [7]. Again, no significant effect of vitamin D supplementation was found.

      Summarizing the findings from vitamin D trials, those trials that had baseline 25(OH)D concentrations below 50 nmol/L (20 ng/mL) found reduced risk of respiratory tract infections from taking vitamin D3 while those with higher baseline concentrations did not.

      Robert Heaney recently outlined guidelines for optimizing designs of nutrients such as vitamin D [8]. The important points for vitamin D are to start with an understanding of the 25(OH)D concentration-health outcome relation, measure 25(OH)D concentrations, enroll only those with low 25(OH)D concentrations, supplement with enough vitamin D3 to raise concentrations high enough to see an effect, and remeasure 25(OH)D concentrations. Very few vitamin D trials satisfied these steps. Many 25(OH)D concentration-health outcome relations show rapid changes below 15 ng/mL with very little change after 30 ng/mL [9, 10]. Thus, vitamin D RCTs should seek to enroll people with baseline 25(OH)D concentrations below 20 ng/mL.

      Additional evidence that vitamin D reduces risk of respiratory tract infections comes from an ecological study of influenza case-fatality rates in 12 communities in the United States from the 1918–1919 influenza pandemic. Case fatalities were generally due to pneumonia and occurred about 10 days after the influenza infection. In a comparison with solar UVB doses for summer or winter, rates were significantly lower in communities with higher solar UVB doses [11]. The mechanisms proposed were that vitamin D induces cathelicidin, which can kill bacteria, and reduction in the cytokine storm that often accompanies influenza. The cytokine storm can damage the lining of the lungs, thereby permitting the ever present bacteria to give rise to pneumonia. The influenza in that pandemic was type A H1N1.

      Thus, there is plenty of evidence that vitamin D can prevent and treat upper respiratory tract infections.

      References 1. Yawn J, Lawrence LA, Carroll WW, Mulligan JK. Vitamin D for the treatment of respiratory diseases: Is it the end or just the beginning? J Steroid Biochem Mol Biol. 2015 Jan 24. pii: S0960-0760(15)00029-1. doi: 10.1016/j.jsbmb.2015.01.017. [Epub ahead of print] 2. Aloia JF, Li-Ng M. Re: epidemic influenza and vitamin D. Epidemiol Infect. 2007;135(7):1095-6; author reply 1097-8. 3. Li-Ng M, Aloia JF, Pollack S, et al. A randomized controlled trial of vitamin D3 supplementation for the prevention of symptomatic upper respiratory tract infections. Epidemiol Infect. 2009;137(10):1396-404. 4. Urashima M, Segawa T, Okazaki M, Kurihara M, Wada Y, Ida H. Randomized trial of vitamin D supplementation to prevent seasonal influenza A in schoolchildren. Am J Clin Nutr. 2010;91(5):1255-60. 5. Camargo CA Jr, Ganmaa D, Frazier AL, et al. Randomized trial of vitamin D supplementation and risk of acute respiratory infection in Mongolia. Pediatrics. 2012;130(3):e561-7. 6. Murdoch DR, Slow S, Chambers ST, et al. Effect of vitamin D3 supplementation on upper respiratory tract infections in healthy adults: the VIDARIS randomized controlled trial. JAMA. 2012;308(13):1333-9. 7. Rees JR, Hendricks K, Barry EL, et al. Vitamin d3 supplementation and upper respiratory tract infections in a randomized, controlled trial. Clin Infect Dis. 2013;57(10):1384-92. 8. Heaney RP. Guidelines for optimizing design and analysis of clinical studies of nutrient effects. Nutr Rev. 2014;72(1):48-54. 9. Grant WB. Relation between prediagnostic serum 25-hydroxyvitamin D level and incidence of breast, colorectal, and other cancers. J Photochem Photobiol B, 2010;101(2):130–6. 10. Garland CF, Kim JJ, Mohr SB, et al. Meta-analysis of all-cause mortality according to serum 25-hydroxyvitamin D. Am J Pub Health. 2014;104(8):e43-50. 11. Grant WB, Giovannucci E. The possible roles of solar ultraviolet-B radiation and vitamin D in reducing case-fatality rates from the 1918–1919 influenza pandemic in the United States. Dermatoendocrinol. 2009;1(4): 215-9.

      Disclosure I receive funding from Bio Tech Pharmacal (Fayetteville, AR), MediSun Technology (Highland Park, IL), and the Vitamin D Council (San Luis Obispo, CA).


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    1. On 2015 Feb 01, William Grant commented:

      The paper by Jorde and Grimes outlines the case for conducting more vitamin D randomized controlled trials (RCTs) [1]. They also point out that RCTs conducted on those with low baseline 25-hydroxyvitamin D [25(OH)D] concentration are more likely to find beneficial effects of vitamin D supplementation than those with higher baselines. In agreement with this point, we just published a review of vitamin D RCTs and biomarkers of inflammation. Among the 22 trials with baseline 25(OH)D concentration below 47 nmol/L, 49% found reduced biomarkers of inflammation while for the 12 trials with baseline 25(OH)D concentration above 48 nmol/L, only 27% did [2]. In addition, achieved 25(OH)D concentration was relatively unimportant.

      Robert Heaney recently presented guidelines for designing nutrient RCTs. The key steps for vitamin D RCTs include starting with an understanding of the 25(OH)D concentration-health outcome relation, generally from observational studies, measure 25(OH)D concentrations of prospective participants, include only those with 25(OH)D concentrations near the low end of the relation, supplement with enough vitamin D3 to raise 25(OH)D concentrations to near the upper end of the relation, remeasure 25(OH)D concentrations, and optimize conutrient status [3]. Few vitamin D RCTs have been designed in accordance with these guidelines, including the major ones currently underway.

      As to the concern about J- an U-shaped 25(OH)D concentration-health outcome relations, one of the reasons for such findings appears to be that those with the highest 25(OH)D concentrations started taking vitamin D supplements late in life, possibly after developing some vitamin D deficiency conditions such as osteoporosis. In support of this hypothesis, two similar observational studies of 25(OH)D concentration and frailty conducted in the United States found different results: for men, there was a nearly linear inverse relation between 25(OH)D and frailty [4] while for women, there was a U-shaped relation [5]. In the United States, postmenopausal women are often advised to take vitamin D but older men are not.

      One of the emerging topics of research is whether the observational studies finding inverse correlations between health outcomes and 25(OH)D concentrations might be due to non-vitamin D effects of solar UV exposure. There is mounting evidence that this may be the case for at least three types of health outcomes.

      For many types of cancer, geographical ecological studies find inverse correlations between solar UVB doses and cancer incidence and/or mortality rates [6]. A mouse model study recently found that UVB exposure was more effective in slowing the progression of intestinal tumors than was oral vitamin D intake when both raised 25(OH)D concentrations by similar amounts [7].

      Several recent studies have found that there are non-vitamin D effects associated with solar UVB exposure for multiple sclerosis [8-11].

      Long wave UV (UVA) has been found to lower blood pressure [12], a risk factor for cardiovascular disease.

      The mechanisms whereby UVB reduces the risk of disease independent of vitamin D are not well known and determining what they are remains an active field of research.

      Based on the knowledge to date, what seems to be a prudent policy is spending time in the sun daily when it is possible to make vitamin D, generally when the solar elevation angle is greater than 45 deg. [13] and taking vitamin D supplements when not.

      References 1. Jorde R, Grimnes G. Vitamin D and health: The need for more randomized controlled trials. J Steroid Biochem Mol Biol. 2015 Jan 27. pii: S0960-0760(15)00033-3. doi: 10.1016/j.jsbmb.2015.01.021. [Epub ahead of print] Review. 2. Cannell JJ, Grant WB, Holick MF. Vitamin D and inflammation. Dermato-Endocrinology. 2015;6(1): e983401-1-10. DOI:10.4161/19381980.2014.983401 3. Heaney RP. Guidelines for optimizing design and analysis of clinical studies of nutrient effects. Nutr Rev. 2014;72(1):48-54. 4. Ensrud KE, Blackwell TL, Cauley JA, Cummings SR, Barrett-Connor E, Dam TT, Hoffman AR, Shikany JM, Lane NE, Stefanick ML, Orwoll ES, Cawthon PM; Osteoporotic Fractures in Men Study Group. Circulating 25-hydroxyvitamin D levels and frailty in older men: the osteoporotic fractures in men study. J Am Geriatr Soc. 2011;59(1):101-6. 5. Ensrud KE, Ewing SK, Fredman L, Hochberg MC, Cauley JA, Hillier TA, Cummings SR, Yaffe K, Cawthon PM; Study of Osteoporotic Fractures Research Group. Circulating 25-hydroxyvitamin D levels and frailty status in older women. J Clin Endocrinol Metab. 2010;95(12):5266-73. 6. Moukayed M, Grant WB. Molecular link between vitamin D and cancer prevention. Nutrients. 2013;5(10):3993-4023. 7. Rebel H, der Spek CD, Salvatori D, van Leeuwen JP, Robanus-Maandag EC, de Gruijl FR.UV exposure inhibits intestinal tumour growth and progression to malignancy in intestine-specific Apc mutant mice kept on low vitamin D diet. Int J Cancer. 2015;136(2):271-7. 8. Lucas RM, Ponsonby AL, Dear K, Valery PC, Pender MP, Taylor BV, Kilpatrick TJ, Dwyer T, Coulthard A, Chapman C, van der Mei I, Williams D, McMichael AJ. Sun exposure and vitamin D are independent risk factors for CNS demyelination. Neurology. 2011;76(6):540-8. 9. Zivadinov R, Treu CN, Weinstock-Guttman B, Turner C, Bergsland N, O'Connor K, Dwyer MG, Carl E, Ramasamy DP, Qu J, Ramanathan M. Interdependence and contributions of sun exposure and vitamin D to MRI measures in multiple sclerosis. J Neurol Neurosurg Psychiatry. 2013;84(10):1075-81. 10. Bjørnevik K, Riise T, Casetta I, Drulovic J, Granieri E, Holmøy T, Kampman MT, Landtblom AM, Lauer K, Lossius A, Magalhaes S, Myhr KM, Pekmezovic T, Wesnes K, Wolfson C, Pugliatti M. Sun exposure and multiple sclerosis risk in Norway and Italy: The EnvIMS study. Mult Scler. 2014;20(8):1042-1049. 11. Knippenberg S, Damoiseaux J, Bol Y, Hupperts R, Taylor BV, Ponsonby AL, Dwyer T, Simpson S, van der Mei IA. Higher levels of reported sun exposure, and not vitamin D status, are associated with less depressive symptoms and fatigue in multiple sclerosis. Acta Neurol Scand. 2014;129(2):123-31. 12. Liu D, Fernandez BO, Hamilton A, Lang NN, Gallagher JM, Newby DE, Feelisch M, Weller RB. UVA irradiation of human skin vasodilates arterial vasculature and lowers blood pressure independently of nitric oxide synthase. J Invest Dermatol. 2014;134(7):1839-46. 13. Engelsen O. The relationship between ultraviolet radiation exposure and vitamin D status. Nutrients. 2010;2(5):482-95.


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    1. On 2015 Feb 11, Marco Ventura commented:

      I do not understand what is the novelty of this study. Very similar studies have been already published about the comparative genomics of the genus Bifidobacterium. Just as a remark for the authors and for the potential readers that are not from this field: see the following papers published in August 2014:

      • Milani, C., Lugli, G.A., Duranti, S., Turroni, F., Bottacini, F., Mangifesta, M., Sanchez, B., Viappiani, A., Mancabelli, L., Taminiau, B., Delcenserie, V., Barrangou, R., Margolles, A., van Sinderen, D., and Ventura, M. 2014. Genome encyclopaedia of type strains of the genus Bifidobacterium. Appl. Environ. Microbiol. 80(20):6290-302.

      • Lugli, G.A., Milani, C., Turroni, F., Duranti, S., Ferrario, C., Viappiani, A., Mancabelli, L., Mangifesta, M., Taminiau, B., Delcenserie, V., van Sinderen, D. and Ventura, M. 2014. Investigation of the evolutionary development of the genus Bifidobacterium by comparative genomics. Appl. Environ. Microbiol. 80(20):6383-94.

      Enjoy the reading


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    1. On 2015 Jul 13, Graham Coop commented:

      After our paper appeared we were made aware of a great potential example of paternal control of female meiotic transmission (Herrera et al. 1996). In many species dispensable supernumerary B-chromosomes are preferentially transmitted to offspring, with this preferential segregation (drive) often occurring through female meiosis (Jones 1991, Burt and Trivers 2006). Herrera et al. studied a widespread B chromosome polymorphism in the grasshopper, Eyprepocnemis plorans. In crosses between 1B females and males from the same focal population in which B-chromosomes were present, B-chromosomes were transmitted following Mendelian ratios. However, when the same females were crossed to males from a population where the B chromosome was not present, they transmitted their B-chromosome to much more than half of their progeny. There was no obvious reduction in fertility, suggesting that this was not due to lethality and potentially due to meiotic drive. Herrera et al suggested that the male control of female meiosis is exerted during the first meiotic division, perhaps due to an effect of substances in the male ejaculate. These results are consistent with our hypothesis that sperm-based suppressors of drive may arise and spread in response to the spread of female meiotic drive elements (such as B-chromosomes), such that female meiotic drive can re-emerge when eggs are exposed to specific sperm from a population where drive suppression had not evolved. We thank Juan Pedro M. Camacho (Universidad de Granada) for kindly bringing this example to our attention and for feedback on this note.

      Yaniv Brandvain and Graham Coop

      Cited References:

      Jones, R.N. 1991. B-Chromosome Drive. American Naturalist 137: 430-442.

      Burt, A. and R. Trivers, 2006. Genes in conflict. Belknap Press, Cambridge.

      Herrera, J. A., M. D. López-León, J. Cabrero, M. W. Shaw and J. P. M. Camacho. 1996. Evidence for B chromosome drive suppression in the grasshopper Eyprepocnemis plorans. Heredity 76: 633–639.


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    1. On 2015 Jun 10, Paul Golding commented:

      Baggott and Tamura imply that my experiment was flawed because: “The study design by Golding (2014) should have included a balanced supplementation of micronutrients at the level of generally recommended dietary intakes.” and advise that “Therefore, the data presented by Golding (2014) must be cautiously interpreted”.

      My full response is available here.

      Was the 500 mg/day vitamin C supplement excessive, and could it have abnormally extended the time taken to deplete the liver folate store?

      Baggott and Tamura claim that my 500 mg/day vitamin C supplement was excessive, and that my saturated vitamin C status was abnormal. They propose that by abnormally protecting the reduced (unstable) form of folate from oxidation, which they claim would not have been preserved by recommended vitamin C intakes, the “excessive” vitamin C preserved the liver folate store. I strongly disagree with these assertions.

      Carr et al (2012), Levine et al. (1996) and Lykkesfeldt and Poulsen (2010) recommend that vitamin C intake should be sufficient to ensure plasma saturation. If the plasma vitamin C concentration is insufficient to prevent oxidation of fully reduced folate, although sufficient to prevent scurvy, there would be sub-optimal vitamin C status.

      There is no evidence that, once there is sufficient vitamin C present to ensure plasma saturation, and thereby protect the fully reduced folates, additional amounts will affect the time taken to develop folate deficiency.

      Levine et al. (1996) recommend 200 mg vitamin C daily, very significantly higher than the 70 mg taken by Herbert (Herbert 1962), and a level that ensures plasma saturation. They plotted plasma vitamin C concentration against the daily vitamin C dose (Levine et al. 1996 Figure 1C); this produced a sigmoid curve with 200 mg the lowest dose to reach a plateau.

      I used data from Levine et al. (1996 Table 1) to produce a chart to illustrate the relationship between vitamin C dose and the plasma concentration, at relevant levels. At Herbert’s dose of 70 mg/day, plasma concentration is 32 µmol/L; at 200 mg/day recommended by Levine et al. (1996), plasma concentration is 66 µmol/L; at my dose of 500 mg/day, plasma concentration is 71 µmol/L. A 500 mg dose of vitamin C will not produce a significantly higher plasma concentration than the 200 mg dose recommended by Levine et al. (1996), but a 70 mg dose will produce a very significantly lower plasma concentration. The Excel file, high-resolution PDF and Microsoft PowerPoint slide for my chart are available at the link above.

      The predicted plasma vitamin C concentration of 71 µmol/L, produced by my intake of 500 mg/day, is very close to the value considered by Carr et al. (2012) to be necessary for good health.

      The vitamin C supplement used by me was integrated with the iron tablets taken to prevent the iron deficiency reported by Herbert. As stated in Golding (2014), the iron tablets (Abbott Australia Ferro-Grad C) comprised 325 mg ferrous sulphate (equivalent to 105 mg elemental iron), with 562 mg sodium ascorbate (equivalent to 500 mg vitamin C). Sodium ascorbate is necessary to ensure adequate absorption of the iron (Hurrell 2002, McCurdy 1968).

      Was the 1000 µg/day vitamin B12 supplement excessive, and could it have abnormally extended the time taken for me to deplete my liver folate store?

      Although Baggott and Tamura raise the possibility of such a confounding effect, they have not suggested any mechanism for it, or cited any published reports of such findings.

      I found no published reports of vitamin B12 used to overcome a dietary folate deficiency, or any findings of interference by vitamin B12 supplements with folate metabolism where there was no initial vitamin B12 deficiency. An initially untreated vitamin B12 deficiency can cause a secondary functional folate deficiency; the “methylfolate trap” (Tisman and Herbert 1973). Such a secondary folate deficiency might be corrected by vitamin B12 supplements, depending on the cause of the vitamin B12 deficiency, but there is no published evidence that increasing the vitamin B12 intake beyond that will have any effect on folate metabolism.

      As explained in Golding (2014), the 1000 µg/day vitamin B12 supplement was necessary to prevent vitamin B12 deficiency. Extensive testing during my previous vitamin B12 investigation showed that my vitamin B12 is absorbed and transported to cells normally but is not utilised adequately within the cells, presumably because of a deficiency of one of the B12 cofactors. At least 250 µg was needed to avoid deficiency but 1000 µg is the most readily available, allows a reasonable margin for error, and is within the recommended range for the oral vitamin B12 dose (Kuzminski et al. 1998).

      Did the experiment include appropriate supplementation of micronutrients and was the title adequate?

      Baggott and Tamura have not provided any evidence that taking either of these supplements could have interfered with the development of folate deficiency in my experiment, and have not offered any plausible mechanism for such confounding effects. In addition, my supplementation with vitamin C and vitamin B12 was reasonable, in the doses used, to prevent deficiencies.

      I therefore disagree with their advice that “Therefore, the data presented by Golding (2014) must be cautiously interpreted”, and with what they imply in their conclusion; that my experiment was flawed because the study design failed to include “a balanced supplementation of micronutrients at the level of generally recommended dietary intakes.”

      I also disagree with their assertion that “The title … should have contained words clearly indicating that the subject had a high initial folate status and was saturated with ascorbate.” My replete folate status was clearly stated in Objective, Experiment Design and The Subject. According to Levine et al. (1996), Carr et al. (2012) and Lykkesfeldt and Poulsen (2010), plasma saturation is the normal optimal vitamin C status.

      References

      Baggott JE, Tamura T (2014) The second study of experimental human folate deficiency. SpringerPlus 3:719

      Carr AC, Pullar JM, Moran S, Vissers MC (2012) Bioavailability of vitamin C from kiwifruit in non-smoking males: determination of 'healthy' and 'optimal' intakes. J Nutr Sci 1:e14

      Golding PH (2014) Severe experimental folate deficiency in a human subject – a longitudinal study of biochemical and haematological responses as megaloblastic anaemia develops. SpringerPlus 3:442

      Herbert V (1962) Experimental nutritional folate deficiency in man. Trans Assoc Am Physicians 75:307–320

      Herbert V (1987) Recommended dietary intakes (RDI) of folate in humans. Am J Clin Nutr 45(4):661–670

      Hurrell RF (2002) Fortification: overcoming technical and practical barriers. J Nutr 132(4 Suppl):806S–812S

      Kuzminski AM, Del Giacco EJ, Allen RH, Stabler SP, Lindenbaum J (1998) Effective treatment of cobalamin deficiency with oral cobalamin. Blood 92(4):1191-1198

      Levine M, Conry-Cantilena C, Wang Y, Welch RW, Washko PW, Dhariwal KR, Park JB, Lazarev A, Graumlich JF, King J, Cantilena LR (1996) Vitamin C pharmacokinetics in healthy volunteers: evidence for a recommended dietary allowance. Proc Natl Acad Sci 93(8):3704–3709

      Lykkesfeldt J, Poulsen HE (2010) Is vitamin C supplementation beneficial? Lessons learned from randomised controlled trials. Br J Nutr 103(9):1251-1259

      McCurdy PR, Dern RJ (1968) Some therapeutic implications of ferrous sulfate-ascorbic acid mixtures. Am J Clin Nutr 21(4):284–288

      Tisman G, Herbert V (1973) B12 dependence of cell uptake of serum folate: an explanation for high serum folate and cell folate depletion in B 12 deficiency. Blood 41(3):465–469


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    1. On 2015 Feb 23, William Grant commented:

      Concerns over Vitamin D and clinical practice at a crossroads recommendations

      In their viewpoint piece, Vitamin D and clinical practice at a crossroads, Manson and Bassuk state among other things that the Institute of Medicine (IOM) set the recommended dietary allowance for vitamin D at 600 IU/d for those living in the upper latitudes of North America aged to 70 years and 800 IU/d for those older in order to reach a 25-hydroxyvitamin D [25(OH)D] concentration of 20 ng/mL (50 nmol/L) [1]. However, it is not clear how the Dietary Reference Intakes for Calcium and Vitamin D committee arrived at that number. For example, on p. 3-20 of the vitamin D and calcium IOM report [2], Figure 3-4 from Cashman et al. [3] is given as Figure 3-4, although without the 95% confidence intervals as in the original paper. The results were based on a 22-week placebo, randomized controlled supplementation study involving men and women aged 20-40 years. Inspection of Figure 2 in Ref. 3 indicates that it would take 1155 IU/d vitamin D3 for 97.5% of the 20-40 year old population sampled to reach 50 nmol/L. In a subsequent paper based on a systematic review and meta-analysis of vitamin D intake and 25(OH)D concentrations, the same group determined that it would take 930 IU/d vitamin D3 for people living in northern Europe to reach 50 nmol/L [4]. Further complicating matters is the fact that not all of the contributions from diet are accounted for in most studies. It is becoming apparent that some food such as meat has vitamin D in the form of 25(OH)D. Thus, vegans in the UK have 25(OH)D concentrations 20 nmol/L lower than omnivores [5], so require higher vitamin D intake from non-dietary sources or solar UVB exposure.

      Their comment that "while awaiting the results of the large trials now in progress, physicians would be well advised to follow current USPSTF and IOM recommendations and avoid overscreening and overprescribing supplemental vitamin D" is also not well grounded. The IOM restricted its assessment of the benefits of vitamin D to vitamin D randomized controlled trials [RCTs] with substantial benefits by 2010. A number of trials since then demonstrated health benefits, e.g., for biomarkers of inflammation, where it was found that RCTs with baseline 25(OH)D concentrations below 48 nmol/L had a 50% chance of findings benefits from vitamin D supplementation compared to 25% with baseline 25(OH)D concentrations above 50 nmol/L [6]. In addition, ecological, observational, clinical, and laboratory studies have found many health benefits of solar UVB exposure and/or vitamin D. Since the IOM report was published (29 November, 2010), 13,535 publications with vitamin D in the title or abstract have been published at PubMed.gov as of 23 February, 2015, compared with 27,775 published before that date. Many of these publications strengthen the case for vitamin D supplementation and UVB exposure.

      In terms of confounding factors related to observational studies, one not mentioned in Ref. 1 is the possibility that solar UV exposure may have health benefits in addition to vitamin D production. As a result, 25(OH)D concentrations may be an index of UVB exposure. Beneficial effects of UV exposure in addition to vitamin D production have been reported for intestinal cancer [7], multiple sclerosis [8], and blood pressure [9].

      As for concern about adverse effects of higher 25(OH)D concentrations based on observational studies, it should be noted that most such studies do not obtain any information from participants about vitamin D supplementation prior to having 25(OH)D concentrations measured. Thus, those with adverse health outcomes and high 25(OH)D concentrations may have started taking vitamin D supplements shortly before blood draw. For example, studies of frailty vs. 25(OH)D concentration found a U-shaded relation for elderly women [10] but a linear inverse relation for elderly men [11]. Elderly women in the U.S. are much more likely to be advised to take vitamin D supplements than men, and starting to take vitamin D late in life cannot erase the adverse effects of years of low 25(OH)D concentrations. In addition, meta-analyses of observational studies of health outcomes with respect to 25(OH)D concentrations do not show U-shaped relations for cardiovascular disease [12] or all-cause mortality rates [13].

      As to their comment regarding how interest in vitamin D could jeopardize ongoing vitamin D RCTs, that should not be the case if trial participants are screened by measuring 25(OH)D concentration prior to acceptance and including only those with 25(OH)D concentrations below 50 nmol/L then dropping any who are subsequently prescribed supplements in excess of the IOM recommendations. Over 99% of the population is not enrolled in vitamin D RCTs and should not be held hostage to ongoing or planned trials since there appear to be many health benefits and very few risks of vitamin D supplementation below 4000 IU/d [14] even by the IOM's admission [2].

      References 1. Manson JE, Bassuk SS. Vitamin D research and clinical practice: at a crossroads. JAMA. 2015 Feb 19. doi: 10.1001/jama.2015.1353. [Epub ahead of print] 2. Ross AC, Taylor CL, Yaktine AL, Del Valle HB, eds. ; Committee to Review Dietary Reference Intakes for Vitamin D and Calcium; Dietary Reference Intakes for Calcium and Vitamin D. Institute of Medicine. ISBN: 0-309-16395-1, 482 pages, (2010) Available from National Academies Press at: http://www.nap.edu/catalog/13050.html 3. Cashman KD, Hill TR, Lucey AJ, et al. Estimation of the dietary requirement for vitamin D in healthy adults. Am J Clin Nutr. 2008;88(6):1535-42. 4. Cashman KD, Fitzgerald AP, Kiely M, Seamans KM. A systematic review and meta-regression analysis of the vitamin D intake-serum 25-hydroxyvitamin D relationship to inform European recommendations. Br J Nutr. 2011;106(11):1638-48. 5. Crowe FL, Steur M, Allen NE, et al. Plasma concentrations of 25-hydroxyvitamin D in meat eaters, fish eaters, vegetarians and vegans: results from the EPIC-Oxford study. Public Health Nutr. 2011;14(2):340-6. 6. Cannell JJ, Grant WB, Holick MF. Vitamin D and inflammation. Dermato-Endocrinology. 2014;6(1):e983401-1-10.<br> 7. Rebel H, der Spek CD, Salvatori D, et al.UV exposure inhibits intestinal tumour growth and progression to malignancy in intestine-specific Apc mutant mice kept on low vitamin D diet. Int J Cancer. 2015;136(2):271-7. 8. Zivadinov R, Treu CN, Weinstock-Guttman B, et al. Interdependence and contributions of sun exposure and vitamin D to MRI measures in multiple sclerosis. J Neurol Neurosurg Psychiatry. 2013;84(10):1075-81. 9. Opländer C, Volkmar CM, Paunel-Görgülü A, et al. Whole body UVA irradiation lowers systemic blood pressure by release of nitric oxide from intracutaneous photolabile nitric oxide derivates. Circ Res. 2009;105(10):1031-40. 10. Ensrud KE, Ewing SK, Fredman L, et al. Circulating 25-hydroxyvitamin D levels and frailty status in older women. J Clin Endocrinol Metab. 2010;95(12):5266-73. 11. Ensrud KE, Blackwell TL, Cauley JA, et al. Circulating 25-hydroxyvitamin D levels and frailty in older men: the osteoporotic fractures in men study. J Am Geriatr Soc. 2011;59(1):101-6. 12. Wang L, Song Y, Manson JE, et al. Circulating 25-hydroxy-vitamin D and risk of cardiovascular disease: A meta-analysis of prospective studies. Circ Cardiovasc Qual Outcomes. 2012;5(6):819-29. 13. Garland CF, Kim JJ, Mohr SB, et al. Meta-analysis of all-cause mortality according to serum 25-hydroxyvitamin D. Am J Pub Health. 2014;104(8):e43-50. 14. Vieth R. Implications for 25-hydroxyvitamin D testing of public health policies about the benefits and risks of vitamin D fortification and supplementation. Scand J Clin Lab Invest Suppl. 2012;243:144-53.

      Disclosure I receive funding from Bio-Tech Pharmacal, Inc. (Fayetteville, AR), MediSun Technology (Highland Park, IL), and the Vitamin D Council (San Luis Obispo, CA).


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    1. On 2016 Jan 16, Lewis G Halsey commented:

      Fay worries that in the real world of data collection, the power of a study is not known in advance. If true, this argument would only compound our own, which is that unless power is very high (>90%) P has surprisingly low repeatability (Halsey et al., 2015), and the power of most studies calculated after the data analysis is far lower than this (Button et al., 2013, Maxwell, 2004). Therefore, researchers would not be able to design their experiment to ensure it has a very high power, and they could not rely on good fortune instead for their experiment to turn out this way.

      But anyway, an integral step in testing the null hypothesis generates an estimate of the variance of the pooled population. Using this estimated parameter, obtained as the data are analysed, the researcher can immediately gauge the study’s power. The exact parameters of the population are never known. These parameters are hypothesised and then estimated, with varying certainty, according to the sample that we have. With a limited sample, these estimates can vary substantially each time an experiment is repeated. If our samples, and the estimates they generate, suggest that power is poor, then any P value that we obtain, low or not, is untrustworthy. A small P value is of little import: a repetition of the same study would give another result (our study, figure 4). This is like looking at the world through a pinhole. When the theoretical power is 0.48, P values less than 0.05 are no more likely than P values greater than 0.05. Why get excited if P is <0.01, when the next replicate experiment could give a P of 0.6?

      Fay asks if there is a single better measure than P to test the likelihood that the null hypothesis is untenable. First, this brings us back to the nub of the problem - P is only a good test of the null in the ideal circumstances that study power is very high. Second, there are long-held, big concerns about the value of null hypothesis significance testing as a method for analysing and interpreting data (Cohen, 1994).

      Lewis G Halsey and Gordon B Drummond

      BUTTON, K., IOANNIDIS, J., MOKRYSZ, C., NOSEK, B., FLINT, J., ROBINSON, E. & MUNAFO, M. (2013) Power failure: why small sample size undermines the reliability of neuroscience. Nature Reviews Neuroscience, 14, 365-376. COHEN, J. (1994) The Earth is round (p < 0.05). American Psychologist 49, 997-1003. HALSEY, L., CURRAN-EVERETT, D., VOWLER, S. & DRUMMOND, G. (2015) The fickle P value generates irreproducible results. Nature Methods, 12, 179-185. MAXWELL, S. (2004) The persistence of underpowered studies in psychological research: Causes, consequences, and remedies. Psychological Methods, 9, 147-163.


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    1. On 2015 Apr 24, CHARLES KING commented:

      I feel there is a serious methodological flaw in the recently published Cochrane Review “Circulating antigen tests and urine reagent strips for diagnosis of active schistosomiasis in endemic areas” by Ochodo, et el., 2015. The inaccurate analysis used in the HSROC estimation skews the reported summary results on the diagnostic performance of both antigen tests and dipsticks, and a correct analysis would actually invalidate several of the conclusions and recommendations found in the current version of the review: My objection is to the use of egg count diagnostics as a reference standard for the diagnosis of Schistosoma infection. The stool egg count for S. mansoni and S. japonicum and the urine filtration egg count for S. haematobium have long been known to be poorly sensitive for low intensity infections. When subjects are repeatedly tested for 7-15 days in a row, single day egg count testing has a sensitivity of 40-60%. Although these imperfect tests remain in widespread use in field studies and control campaigns because they accurately detect persons with heavy infections, they cannot be relied upon to establish infection in all subjects. The failings of stool counting for S. mansoni were documented in the work of de Vlas and colleagues cited below [1,2]. The limitations of stool counting for S. japonicum have been established by Carabin, et al.,[3] and Hubbard, et al.,[4] and the limitations of egg counting for S. haematobium can be found in Savioli et al.,[5] and Warren, et al.[6]

      In all cases, egg counting cannot be considered a ‘gold standard’ diagnostic. Such a test, with ~50% sensitivity, is so inaccurate to be useless on a per-individual diagnostic basis. I feel that the appropriate comparison for the Ochodo, et al., review would have been Latent Class Analysis, in which two imperfect tests are compared in their attempt to classify an unmeasured ‘true’ infection status. Using egg count results as a reference standard in the HSROC was a serious error--reporting a new test’s performance benchmarked against an already flawed test is meaningless, and in fact, the reported comparisons are misleading to the practitioner or public health officer.

      Secondly, I feel that the exclusion of results from populations or areas without significant Schistosoma risk was also a tactical error. If we are concerned about the specificity of new tests, there is great value in measuring results among persons who have a very low prior probability of infection.

      I would strongly recommend that the Cochrane review be revised and re-issued after the authors revisit the data using the approach of Dendukuri, et al., 2012 [7] for situations where there is no gold standard. Their SAS code is available online, and the reanalysis could be done in a matter of a day. The Bayesian LCA should be informed by prior observations on the estimated specificity of single (or treble stool) examinations, and the known specificity estimates of dipsticks and antigen testing among non-endemic populations.

      The concern is that while the authors discuss and reiterate the lack of a gold standard and the insensitivity of the egg count procedures they go right ahead and use them as their comparator and they present strong conclusions that are biased by their approach. This will only add to policymakers’ confusion about the utility of these alternative test approaches.

      By way of disclosure, I have no relation to the manufacturers of these tests, and I have no conflict of interest in this matter.

      1. de Vlas SJ, Engels D, Rabello AL, Oostburg BF, Van Lieshout L, Polderman AM, Van Oortmarssen GJ, Habbema JD, Gryseels B, 1997. Validation of a chart to estimate true Schistosoma mansoni prevalences from simple egg counts. Parasitology 114 ( Pt 2): 113-21.
      2. de Vlas SJ, Gryseels B, 1992. Underestimation of Schistosoma mansoni prevalences. Parasitol Today 8: 274-277.
      3. Carabin H, Marshall CM, Joseph L, Riley S, Olveda R, McGarvey ST, 2005. Estimating the intensity of infection with Schistosoma japonicum in villagers of Leyte, Philippines. Part I: A Bayesian cumulative logit model. The Schistosomiasis Transmission & Ecology Project (STEP). Am J Trop Med Hyg 72: 745-753.
      4. Hubbard A, Liang S, Maszle D, Qiu D, Gu X, Spear RC, 2002. Estimating the distribution of worm burden and egg excretion of Schistosoma japonicum by risk group in Sichuan Province, China. Parasitology 125: 221-31.
      5. Savioli L, Hatz C, Dixon H, Kisumku UM, Mott KE, 1990. Control of morbidity due to Schistosoma haematobium on Pemba Island: egg excretion and hematuria as indicators of infection. Am J Trop Med Hyg 43: 289-295.
      6. Warren KS, Arap Siongok TK, Hauser HB, Ouma JH, Peters PAS, 1978. Quantification of infection with Schistosoma haematobium in relation to epidemiology and selective population chemotherapy. I. Minimal number of daily egg counts in urine necessary to establish intensity of infection. Journal of Infectious Diseases 138: 849-55.
      7. Dendukuri N, Schiller I, Joseph L, Pai M, 2012. Bayesian meta-analysis of the accuracy of a test for tuberculous pleuritis in the absence of a gold standard reference. Biometrics 68: 1285-1293.


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    1. On 2015 Aug 24, Eiko Fried commented:

      We have published a commentary on this article in Frontiers of Psychiatry, in which we introduce Symptomics as a novel research paradigm for psychiatry and clinical psychology. We provide a brief summary of the commentary below.

      Summary:

      "Research has now shown that distinct depression symptoms differ in the risk factors that predispose them, their underlying biology, their response to specific life events, and their impact on impairment of psychosocial functioning. The recently published work by Hieronymus et al. adds the differential reactivity of depression symptoms to antidepressant medication to this prior body of work. The authors argue that the findings stress the importance of analyzing individual depression symptoms in future studies. We would like to extend their claim: these results mandate the examination of symptom-specific effects throughout the realm of psychopathology. Symptomics invites the application of new modeling efforts to the level of individual symptoms as fundamental building blocks of mental disorders. Focusing (A) on the level of symptoms and (B) analyzing the causal relations among them—as an alternative approach to the dominant focus on diagnoses—is likely to extend our understanding of psychopathology directly and significantly. As such, symptomics may herald a time of renewed research energy that could, finally, provide an inroad to achieve real understanding of the mechanisms underlying psychopathology."

      Reference:

      Fried EI, Boschloo L, van Borkulo CD, Schoevers RA, Romeijn J-W, Wichers MC, de Jonge P, Nesse RM, Tuerlinckx F, & Borsboom D (2015). Commentary: "Consistent superiority of selective serotonin reuptake inhibitors over placebo in reducing depressed mood in patients with major depression", Frontiers in Psychiatry 6, 1–3. DOI: 10.3389/fpsyt.2015.00117.

      URL: http://journal.frontiersin.org/article/10.3389/fpsyt.2015.00117/full


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    1. On 2015 May 28, Peter Good commented:

      Cochran et al. measured brain glutamate, glutamine, GABA, and other metabolites by MRS in the anterior cingulate cortex of ASD adolescents to test whether autistic behavior arises from imbalance of excitatory vs. inhibitory neurotransmitters. They found normal concentrations of excitatory transmitter glutamate, but significantly high non-transmitter glutamine and significantly low inhibitory GABA. They concluded high brain glutamine and/or low GABA might explain imbalance of excitatory vs. inhibitory transmission – i.e. autistic behavior.

      True, low brain GABA could be responsible – but implicating high brain glutamine in autistic behavior is risky at best, and potentially dangerous. Not only do ASD children consistently have low plasma glutamine, high brain glutamine appears to protect against ASD. This is most obvious in children with high brain glutamine from inborn urea cycle disorders (UCD) or propionic acidemia (PA) [Good 2014]. In UCD, failure of the liver urea cycle to detoxify blood ammonia at first pass allows high levels into the brain, which astrocytes detoxify by combining with glutamate to form glutamine. Krivitzky et al.: “Children in this cohort [UCD] show other behavioral/emotional strengths, including a minimal percentage with previous diagnoses of Autism spectrum disorders, mood disorders, and other psychiatric disorders.”[Krivitzky L, 2009] Saul Brusilow (MD) never mentioned autism or autistic behavior in any paper on UCD or hepatic encephalopathy (HE) [personal communication 2013]. Gropman et al., however, noted patients with partial deficiencies of urea cycle enzymes and late-onset presentations may show signs of autism [Gropman AL, 2007]. Cochran et al. also found the osmolyte myoinositol normal in ASD brains; when astrocyte glutamine is high in urea cycle disorders or HE, myoinositol is consistently low. Gabis et al., however, found myoinositol high in ASD astrocytes [Gabis L, 2008].

      Propionic acidemia is another inborn metabolic disorder where high blood ammonia becomes high brain glutamine. Al Owain et al.: “In the consensus conference about diagnosis and management of PA hosted in Washington, D.C. in January 2011, there was no reported association among the neurological sequelae of the disease between PA and autism.”[Al-Owain M, 2013] Other physicians who treat PA and UCD children also report they rarely show autistic behavior. Sabine Scholl-Bürgi (MD): “In our PA patient group none has an ASD.”[personal communication 2014]. Professor of pediatrics (MD): “I see lots of kids with PA and UCD but few (perhaps none) have ASD.”[personal communication 2013]

      Moreover, plasma concentrations of glutamine and GABA in ASD children are consistently opposite brain concentrations detected by Cochran et al. Plasma glutamine is consistently low [e.g. Moreno-Fuenmayor H, 1996; Aldred S, 2003; Shimmura C, 2011] and plasma GABA high [Cohen 2000; Dhossche D, 2002]. Ghanizadeh concluded: “The low level of plasma glutamine . . . is suggested as a screening test for detecting autism in children especially those with normal IQ. The decreased level has been reported before in all children with autism.”[Ghanizadeh A, 2013] Dhossche et al. thought high plasma GABA explained mood disorders and stupor. Burrus concluded a reaction between ammonia and propionic acid could produce a molecule structurally very similar to GABA [Burrus CJ, 2012].

      Glutamine is normally the most abundant amino acid in blood [Souba WW, 1991], a primary brain osmolyte, alternative fuel for brain neurons and astrocytes (especially during hypoglycemia) [Stelmashook EV, 2011], and primary fuel in rapidly replicating cells (e.g. blood vessel endothelial cells, intestinal enterocytes, liver cells, and lymphocytes) [Souba WW, 1987; Souba WW, 1991; Deutz NE, 2008]. Glutamine released from skeletal muscles for anabolic responses to infection may explain the dramatic ability of fever to relieve autistic behavior [Good P, 2013]. A new clue to this phenomenon was recently published at <www.autismstudies.net>.

      Autism Research Institute practitioners commonly give ASD patients oral glutamine to heal their intestines, from 250mg–8g/day, with few side effects (some hyperactivity) [Good P, 2013] – although one neurologist reported seizures. Only two practitioners, however, reported improved behavior from glutamine. Franco Verzella (MD) in Bologna, Italy gives ASD children 5–7g/day of oral glutamine after cleansing their intestines of pathogens like bacteria and Candida: “Multifactorial and multisystemic is the condition, so that the improvement has different aspects in different children. Most common: sedation, less stereotypes, better sleep, more concentration.”[personal communication 2013]

      Cochran and colleagues need to think twice about reducing brain glutamine in ASD children – whose plasma and brain glutamine are more likely TOO LOW than too high. Pangborn (2013) recommended the free amino acid taurine as a natural way to increase conversion of ammonia + glutamate to glutamine.

      Peter Good Autism Studies La Pine OR www.autismstudies.net autismstudies1@gmail.com

      Aldred S, Moore KM, Fitzgerald M, Waring RH. Plasma amino acid levels in children with autism and their families. J Autism Dev Disord 2003;33:93–97.

      Al-Owain M, Kaya N, Al-Shamrani H, et al. Autism spectrum disorder in a child with propionic acidemia. JIMD Rep 2013;7:63–66.

      Burrus CJ. A biochemical rationale for the interaction between gastrointestinal yeast and autism. Med Hypotheses 2012;79:784–785.

      Cohen BI. Infantile autism and the liver: a possible connection. Autism 2000;4:441–442.

      Deutz NEP. The 2007 ESPEN Sir David Cuthbertson Lecture: amino acids between and within organs. The glutamate-glutamine-citrulline-arginine pathway. Clin Nutr 2008;27(3):321–327.

      Dhossche D, Applegate H, Abraham A, et al. Elevated plasma gamma-aminobutyric acid (GABA) levels in autistic youngsters: stimulus for a GABA hypothesis of autism. Med Sci Monit 2002;8:PR1–PR6.

      Gabis L, Wei Huang, Azizian A, et al. 1H-magnetic resonance spectroscopy markers of cognitive and language ability in clinical subtypes of autism spectrum disorders. J Child Neurol 2008;23(7):766–774.

      Ghanizadeh A. Increased glutamate and homocysteine and decreased glutamine levels in autism: a review and strategies for future studies of amino acids in autism. Dis Markers 2013;35:281–286.

      Good P. Does infectious fever relieve autistic behavior by releasing glutamine from skeletal muscles as provisional fuel? Med Hypotheses 2013;80:1–12.

      Good P. Why do children with propionic acidemia or urea cycle disorders rarely show autistic behavior? Autism–Open Access 2014;4:3.

      Gropman AL, Summar M, Leonard JV. Neurological implications of urea cycle disorders. J Inherit Metab Dis 2007;30:865–879.

      Krivitzky L, Babikian T, Lee HS, et al. Intellectual, adaptive, and behavioral functioning in children with urea cycle disorders. Pediatr Res 2009;66:96–101.

      Moreno-Fuenmayor H, Borjas L, Arrieta A, et al. Plasma excitatory amino acids in autism. Invest Clin 1996;37:113–128.

      Pangborn JB. Nutritional Supplement Use for Autism Spectrum Disorder. San Diego: Autism Research Institute; 2013.

      Shimmura C, Suda S, Tsuchiya KJ, et al. Alteration of plasma glutamate and glutamine levels in children with high functioning autism. PLoS One 2011;6:e25340–e25346.

      Souba WW. Interorgan ammonia metabolism in health and disease: a surgeon’s view. J Parenter Enteral Nutr 1987;11:569–579.

      Souba WW. Glutamine: a key substrate for the splanchnic bed. Ann Rev Nutr 1991;11:285–308.

      Stelmashook EV, Isaev NK, Lozier ER, et al. Role of glutamine in neuronal survival and death during brain ischemia and hypoglycemia. Int J Neurosci 2011;121:415–422.


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    1. On 2015 Jun 06, A Martinez-Arias commented:

      This manuscript claims the discovery of a new kind of Embryonic Stem (ES) cell, so called ‘region specific Epiblast stem cells (rsEpiSC). A close look at the protocols, genetics and cell behaviours indicates that what is reported is likely to be an improved method for the maintenance of EpiSCs and the closely related human ES cells; it would be misleading to describe a more stable population as a new entity.

      The main finding reported here is that inhibition of Wnt signalling in cultures of EpiSCs, and also human ES cells, leads to a stable pluripotent population. As briefly indicated below, this has been reported a number of times before, as has the ability of EpiSCs to integrate in postimplantation embryos, the other finding presented here as new. The observation that stabilized human ES cells can undergo a similar integration is, however, novel, though the degree to which this happens and its value will await further experiments.

      It is well known that ES and EpiS cells are, for the most part, heterogeneous populations in dynamic equilibria. In the case of ES cells this can be biased towards a stable state, called ‘ground state’, by application of two inhibitors, one for MEK and another for GSK3 [1]. It is also well known that in contrast with ES cells, when EpiSCs and human ES cells are presented with high levels of Wnt signalling they differentiate [2, 3] and over the last few years a number of reports have shown that inhibition of Wnt secretion or Wnt/ß-catenin signalling increases the self renewal of EpiSCs populations [4-6]. Thus a cocktail of Activin, FGF2 together with Wnt/ß-catenin inhibitors leads to efficient derivation of EpiSCs as well as their stable culture. This is confirmed in this report without acknowledging the earlier studies –interestingly some of these studies are referred to but only as discussing Wnt signalling in pluripotency. Having repeated this observation, the authors now notice that removal of Activin from the cocktail –but not inhibition of Activin signalling, which is not tested- improved the stability of the culture; this tweak is novel and mechanistically intriguing, though it is not pursued further. Thus the main message of the work is that EpiSCs grown or derived in the presence of FGF2 and Wnt inhibitors are stable (this is no new kind of ES cell).

      With regard to the ability of the cells to integrate in the posterior part of postimplantation embryos, there are also precedents showing that EpiSCs, which indeed are not able to integrate in preimplantation embryos under normal conditions, can and will integrate in postimplantation embryos [7, 8]. The point made here that ‘stable EpiSCs integrate preferentially in posterior regions of the embryo is not surprising as integration is likely to be easier in the region undergoing gastrulation, which is ongoing in the posterior region at the time of the injection. Furthermore, the conclusion that ‘rsEpiSCs’ are related to the posterior proximal epiblast of stage E6.5 is similar to that obtained by Kojima et al. that although it is possible to obtain EpiSCs from a range of stages during gastrulation, EpiSC lines tend to correspond to anterior primitive streak i.e. posterior proximal E6.5 [8]. The results presented here are compatible with the observation that EpiSCs derived from embryos at different stages of gastrulation can be different [8] i.e there might be many rsEpiSCs, which is probably not a helpful notion.

      One of the arguments used by the authors to claim the identification of a new type of stem cell is their transcriptional profile. However, EpiSC lines derived from different stages around gastrulation have different properties and transcriptional profiled and much of these differences are likely to be down to signalling [8]. Thus it is not that surprising that a population of EpiSCs severely deprived of Wnt and Activin signalling exhibits a special transcriptional profile and maps, in a PCA plot, away from other cells in different states and notably from EpiSCs grown in Activin and FGF2, a very different cocktail. It is likely that under appropriate experimental conditions, rsEpiSCs will be shown to correspond to one of the EpiSCs derived by Kojima et al. [8], though the changes and adaptations associated with growth in specific signalling environments would make the comparison challenging.

      In summary, this report is a protocol to obtain a state which is to EpiSCs what the ground state (2i) is to the ES cells. This is certainly useful but not enough to talk about a new kind of ES cells. Of course, this is an opinion. Nevertheless, the work provides further support to the importance of Wnt signalling in the control of the dynamics of stem cell populations.

      References [1] Ying QL, Wray J, Nichols J, Batlle-Morera L, Doble B, Woodgett J, et al. The ground state of embryonic stem cell self-renewal. Nature 2008;453:519-23. [2] Singh AM, Reynolds D, Cliff T, Ohtsuka S, Mattheyses AL, Sun Y, et al. Signaling network crosstalk in human pluripotent cells: a Smad2/3-regulated switch that controls the balance between self-renewal and differentiation. Cell Stem Cell 2012;10:312-26. [3] Davidson KC, Adams AM, Goodson JM, McDonald CE, Potter JC, Berndt JD, et al. Wnt/beta-catenin signaling promotes differentiation, not self-renewal, of human embryonic stem cells and is repressed by Oct4. Proc Natl Acad Sci U S A 2012;109:4485-90. [4] Kurek D, Neagu A, Tastemel M, Tuysuz N, Lehmann J, van de Werken HJ, et al. Endogenous WNT signals mediate BMP-induced and spontaneous differentiation of epiblast stem cells and human embryonic stem cells. Stem cell reports 2015;4:114-28. [5] Kim H, Wu J, Ye S, Tai CI, Zhou X, Yan H, et al. Modulation of beta-catenin function maintains mouse epiblast stem cell and human embryonic stem cell self-renewal. Nat Commun 2013;4:2403. [6] Sumi T, Oki S, Kitajima K, Meno C. Epiblast ground state is controlled by canonical Wnt/beta-catenin signaling in the postimplantation mouse embryo and epiblast stem cells. PLoS One 2013;8:e63378. [7] Huang Y, Osorno R, Tsakiridis A, Wilson V. In Vivo differentiation potential of epiblast stem cells revealed by chimeric embryo formation. Cell Rep 2012;2:1571-8. [8] Kojima Y, Kaufman-Francis K, Studdert JB, Steiner KA, Power MD, Loebel DA, et al. The transcriptional and functional properties of mouse epiblast stem cells resemble the anterior primitive streak. Cell Stem Cell 2014;14:107-20.


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    1. On 2015 Jul 23, Neil Davies commented:

      Østergaard and colleagues report that fewer people with a high genetic risk of high blood pressure develop Alzheimer disease compared to those with a lower genetic risk of high blood pressure (1). This is consistent with evidence that use of anti-hypertensive medication is associated with incidence and progression of Alzheimer disease (2–4). We investigated these associations in an observational longitudinal cohort study using data from the Clinical Practice Research Datalink, a database of anonymous UK National Health Service primary and secondary health care data. We found that patients prescribed angiotensin-receptor blockers were less likely to be diagnosed with Alzheimer disease (OR 0.47, 95% CI: 0.37 to 0.58) than those prescribed other anti-hypertensives. Our results were based on observational data and may suffer from residual confounding, but they provide suggestive evidence that blood pressure or blood pressure medication is implicated in the aetiology of Alzheimer disease. A meta-analysis of randomised controlled trials has also suggested that treatment with blood pressure lowering medication may help slow cognitive decline (5).

      However, there are alternative explanations for these associations. Although Mendelian randomization analyses may remove biases due to confounding and reverse causality, survival bias is still likely to be an issue. Individuals with a greater burden of high blood pressure SNPs may have higher mortality, which could cause them to die before developing Alzheimer’s disease and reduce the frequency of blood pressure increasing SNPs in cases compared to controls. Survival bias may also explain the apparent protective effect on Alzheimer’s disease risk of variants that are associated with heaviness of smoking. The smoking heaviness increasing allele located in the CHRNA5-A3-B4 gene cluster has been shown to be associated with increased mortality risk amongst ever smokers (6), which is likely to explain the reduced frequency of this allele amongst older populations of ever compared to never smokers.(7) This highlights the difficulties in using Mendelian randomisation for diseases of old age.

      The authors discuss survival bias, and conclude it is unlikely to be a problem. However, in our opinion more research is needed to quantify the extent and impact of survival bias in Mendelian randomisation studies. It may be possible to assess the extent of survival bias by comparing risk allele frequencies to known allele frequencies in younger populations, or to track their change in a population as it ages. Survival bias is likely to only occur if there are fewer risk alleles in older populations. Simulations may allow us to estimate the size of survival bias and aid the interpretation of Mendelian randomisation studies.

      Neil M. Davies, Amy E. Taylor, Marcus R. Munafò

      [1] S. D. Østergaard et al., Associations between Potentially Modifiable Risk Factors and Alzheimer Disease: A Mendelian Randomization Study. PLOS Med. 12, e1001841 (2015).

      [2] N. Li et al., Use of angiotensin receptor blockers and risk of dementia in a predominantly male population: prospective cohort analysis. Br. Med. J. 340, b5465 (2010).

      [3] N. M. Davies, P. G. Kehoe, Y. Ben-Shlomo, R. M. Martin, Associations of anti-hypertensive treatments with Alzheimer’s disease, vascular dementia, and other dementias. J. Alzheimers Dis. JAD. 26, 699–708 (2011).

      [4] P. G. Kehoe, N. M. Davies, R. M. Martin, Y. Ben-Shlomo, Associations of Angiotensin Targeting Antihypertensive Drugs with Mortality and Hospitalization in Primary Care Patients with Dementia. J. Alzheimers Dis. JAD. 33, 999–1008 (2013).

      [5] N. Levi Marpillat, I. Macquin-Mavier, A.-I. Tropeano, A.-C. Bachoud-Levi, P. Maison, Antihypertensive classes, cognitive decline and incidence of dementia: a network meta-analysis. J. Hypertens. 31, 1073–1082 (2013).

      [6] L. Rode, S. E. Bojesen, M. Weischer, B. G. Nordestgaard, High tobacco consumption is causally associated with increased all-cause mortality in a general population sample of 55,568 individuals, but not with short telomeres: a Mendelian randomization study. Int. J. Epidemiol. 43, 1473–1483 (2014).

      [7] A. E. Taylor, M. R. Munafò, CARTA consortium, Commentary: Does mortality from smoking have implications for future Mendelian randomization studies? Int. J. Epidemiol. 43, 1483–1486 (2014).


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    1. On 2016 Aug 18, David C. Norris commented:

      This JAMA Viewpoint hinges on a categorical claim: “probability is not meaningful in an individual context.” In a subsequent exchange with Van Calster, Steyerberg and Harrell<sup>1</sup> , the authors have backed away slightly from this precipice, stating that it was rather the verifiability (and not meaningfulness) of ‘individual probability’ that was at issue—and indeed that only a frequentist probability notion was targeted by this statement.<sup>2</sup> The authors also explain that their original citation of Cohen<sup>3</sup> in the context of this statement was meant “to direct the reader to the excellent discussion by Cohen of the limitations of the frequentist notion of probability”<sup>2</sup> . Cohen’s discussion is indeed excellent, and the reader who follows up this citation cannot fail to find a forceful rebuke of this Viewpoint's entire treatment of ‘probability’, delivered no less with particular reference to the very context under consideration—medical decision making:

      Nor is it open to a frequency theorist to claim that all important probabilities are indeed general, not singular. It often seems very important to be able to calculate the probability of success for your own child’s appendectomy... <sup>3(p49)</sup>

      Cohen proceeds from this observation to advance a Bayesian perspective; why Sniderman, D’Agostino and Pencina don’t do likewise would be a mystery if they did not reveal some peculiar methodological preoccupations in the ensuing development of their argument.

      Eschewing a (meaningful|verifiable) notion of ‘individual probability’, the authors substitute the petitio principii of ‘individual risk’—the continuous, probabilistic character of which they conceal through the conceit of “clinically meaningful risk categories” [emphasis mine]. Tellingly, they label these categories “clinically meaningful” because they have forfeited the philosophic basis for making them so. Ultimately, what makes any concept clinically meaningful is its openness to connection with the values and circumstances of individual patients. Classification schemes that prematurely close patients’ decision problems have precisely the opposite character. Without such artificial categories, however, the characteristically incoherent<sup>4</sup> frequentist approach to decision-making under uncertainty would lack even a semblance of that singular uncertainty which confronts the patient-physician dyad.

      The authors conclude by calling on physicians to mop up this shambles. They utter the shibboleth, “models cannot replace the physician,” then incant some vague magic by which physicians should restore the individual patient to a scheme that has excluded the individual from its very epistemology. Mathematically, the requisite magic translates to conditioning on individuals after frequentist methods have already averaged individuals out.<sup>4(pp61,509)</sup>

      The ‘art of medicine’ has long enough been defined by quixotic attacks upon mathematical impossibilities. Physicians of the future will gladly relinquish the merely computational tasks of medicine to predictive models and other forms of automation. They will rather find a purposive role in the creative, irreplaceably human endeavor of helping patients to formulate their medical decision problems in alignment with their values and circumstances,<sup>5</sup> and to decide these problems in accordance with appropriate evidence drawn from ever-improving<sup>6</sup> predictive models.

      1] Van Calster B, 2015

      2] Sniderman AD, 2015

      3] Cohen, L. Jonathan. An Introduction to the Philosophy of Induction and Probability. Oxford : New York: Clarendon Press; Oxford University Press, 1989.

      4] Robert, Christian P. The Bayesian Choice: From Decision-Theoretic Foundations to Computational Implementation. 2nd ed. Springer Texts in Statistics. New York: Springer, 2007.

      5] Moroff SV, 1983

      6] Mazzola E, 2015


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    1. On 2015 Dec 09, Donald Forsdyke commented:

      PURINE LOADING AS A THERMAL ADAPTATION The proteins of thermophiles are generally more heat-stable than the corresponding proteins from mesophiles. This must be reflected in either, or both, of two major amino acid variables – composition and order. In the past the notion that amino acid composition might be reflective of the pressure in thermophiles to retain purine-rich codons (3) has been disparaged by Zeldovich et al. (6). In this elegant new paper (5), Venev and Zeldovich (2015) agree that the “multiple factors” not accounted for in their modelling “include the influence of the genetic code and guanine-cytosine (GC) content of the genomes on amino acid frequencies.” However, there is puzzlement that the “theory and simulations predict a strong increase of leucine content in the thermostable proteins, whereas it is only minimally increased in experimental data.” Perhaps it is of relevance that leucine is on the top left quadrant of the standard presentation of the genic code, its codons being extremely poor in purines.

      My response to Zeldovich et al. (6) in 2007, and my follow-up references in 2012 (1, 4), are set out below. One of the coauthors of the 2007 paper has recently further contributed to this topic (2).

      2007 Response

      This paper draws conclusions tending to oppose those of myself and coworkers (cited). A "key question" is held to be: "Which factor - amino acid or nucleotide composition - is primary in thermal adaptation and which is derivative?" Previous evidence is considered "anecdotal." Now there is evidence for "an exact and conclusive" relationship, based on an "exhaustive study" that provides a "complete picture." A set of amino acids - IVYWREL - correlates well with growth temperature. It is noted:

      "Signatures of thermal adaptation in protein sequences can be due to the specific biases in nucleotide sequences and vice versa. ... One has to explore whether a specific composition of nucleotide (amino acid) sequences shapes the content of amino acid (nucleotide) ones, or thermal adaptation of proteins and DNA (at the level of sequence compositions) are independent processes."

      In other words, are primary adaptations at the nucleic acid level driving changes at the protein level, or vice- versa? To what extent are the two processes independent? Their conclusion:

      "Resolving the old-standing controversy, we determined that the variation in nucleotide composition (increase of purine-load, or A + G content with temperature) is largely a consequence of thermal adaptation of proteins."

      Thus, the superficial reader of the paper, while noting the purine-richness of some of the codons corresponding to the IVYWREL amino acids, will conclude that the "independent processes" alternative has been excluded. Reading the paper (e.g. Figure 7) one can question the validity of this conclusion. Many of the IVYWREL amino acids have purine-poor alternative codons (especially IYLV, which at best can only change one purine unit in their codons). One of the IVYWREL amino acids has relatively purine-rich alternative codons (R, which at best can change two purine units). Two (EW) are always purine-rich, and there are no alternatives.

      Displaying more EW's as the temperature got hotter would satisfy a need both for more purines and for more tryptophan and glutamate, so here there is no discrimination as to whether one "shapes" the organism’s content of the other. Displaying more IYLVs gives only minimal flexibility in accommodating a purine-need. Most flexibility is provided by R codons.

      The authors do not give statistics for the differences between the slopes of Figs. 7a (unshuffled codons) and 7b (shuffled codons), but they appear real, presumably reflecting the choice biologically of purine-rich codons, a choice the organisms might not have to make if there were no independent purine-loading pressure. Thus, the authors note, but only in parenthesis, that the slopes "are somewhat different suggesting that codon bias may be partly responsible for the overall purine composition of DNA."

      2012 Response

      As a follow up, it can be noted that Dehouck et al. (2008) report that relationship between a protein's thermostability and the optimum growth temperature of the organism containing it, is not so close as previously thought (1). Furthermore, Liu et al. (2012) now conclude from a study of xylanase purine-rich coding sequences that "The codons relating to enzyme thermal property are selected by thermophilic force at [the] nucleotide level," not at the protein level (4).

      1.Dehouck Y, Folch B, Rooman M (2008) Revisiting the correlation between proteins' thermoresistance and organisms' thermophilicity. Protein Engineering, Design and Selection 21:275-278.Dehouck Y, 2008

      2.Goncearenco A, Berezofsky IN (2014) The fundamental tradeoff in genomes and proteomes of prokaryotes established by the genetic code, codon entropy, and the physics of nucleic acids and proteins. Biology Direct 9:29 Goncearenco A, 2014

      3.Lambros RJ, Mortimer JR, Forsdyke DR (2003) Optimum growth temperature and the base composition of open reading frames in prokaryotes. Extremophiles 7:443–450.Lambros RJ, 2003

      4.Liu L, Wang L, Zhang Z, Wang S, Chen H (2012) Effect of codon message on xylanase thermal activity. J. Biol. Chem. 287:27183-27188 Liu L, 2012

      5.Venev SV, Zeldovich KB (2015) Massive parallel sampling of lattice proteins reveals foundations of thermal adaptation. J. Chem. Phys. 143: 055101Venev SV, 2015

      6.Zeldovich KB, Berezofsky IN, Shakhnovich EI (2007) Protein and DNA sequence determinants of thermophilic adaptation. PLOS Comput. Biol. 3(1), e5.Zeldovich KB, 2007


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    1. On 2017 May 03, Andrea Messori commented:

      Please refer to the Letters' section of the Journal.


      Presenting the results of a pharmacoeconomic study: incremental cost-effectiveness ratio vs net monetary benefit

      Andrea Messori and Sabrina Trippoli

      HTA Unit, ESTAR Regional Health Service, 50135 Firenze (Italy)

      The article by Wouters and colleagues (1) presents an exhaustive overview on how QALYs can be used in cost-effectiveness analysis. In this framework, the authors also mention the incremental cost-effectiveness ratio (ICER), which is the parameter typically employed to express the results of a cost-effectiveness study. The article, however, does not discuss the net monetary benefit (NMB), which is another parameter employed to express the results of a cost-effectiveness study.

      The incremental cost (deltaC) and the incremental effectiveness (deltaE) are the two main parameters of pharmacoeconomics and cost-effectiveness analysis, along with the willingness-to-pay threshold (lambda). The decision rule (e.g. in the case of a favourable pharmacoeconomic result) is (deltaC/deltaE)<lambda (Equation 1), if based on the ICER, or (deltaE x lambda - deltaC) > 0 (Equation 2), if based on the NMB. Likewise, an unfavourable pharmacoeconomic result is when (deltaC/deltaE)>lambda or when (deltaE x lambda - deltaC) < 0; NMB is defined as deltaE x lambda - deltaC, while ICER is defined as deltaC/deltaE. Despite its apparent complexity, most part of pharmacoeconomic methodology is described by the two simple equations reported above (i.e. Equations 1 and 2), but whether the ICER or the NMB is the best parameter for the purposes of pharmacoeconomic decision-making remains on open question.

      The study by Cowper et al evaluating new versus old oral anticoagulants in patients with atrial fibrillation (2) is a typical ICER-based cost-effectiveness analysis in which the ICER of apixaban versus warfarin is compared against a willingness-to-pay threshold. This analysis can be taken as an example for comparing ICER vs NMB.

      In one of the base-case analyses of the study by Cowper et al, QALYs per patient were 7.94 for apixaban and 7.54 for warfarin, while pharmacological costs per patient were $22,934 and $4,392, respectively. These data yielded, for apixaban versus warfarin, an ICER of $46,355 per QALY gained, a value that remains within the willingness-to-pay threshold of $50,000 per QALY gained and is therefore considered favourable (or “high value care”). As pointed our by Hlatky (3), in interpreting a specific ICER value, more than a single willingness-to-pay threshold is frequently considered (e.g. the threshold between $50,000 and $150,000 or the threshold above $150,000), and this allows us to better understand a pharmacoeconomic result expressed on the basis of an ICER.

      In the methodology of pharmacoeconomics, the net monetary benefit (NMB) plays a role similar to that of ICER, but some differences are important.

      Firstly, the ICER –by definition- has always an incremental nature and consequently the absolute cost-effectiveness ratio (calculated for a single treatment in the absence of any comparison) makes little sense and, for this reason, is rarely employed. In contrast, the NMB can be calculated for a single treatment in the absence of any comparison (absolute NMB) or can conversely be calculated as an incremental parameter [according to the equation: (incremental NMB) = (incremental QALYs per patient) x (willingness-to-pay threshold) – (incremental cost per patient)]. Another feature of NMB is that the incremental NMB for the comparison of A vs B can be estimated as the absolute NMB calculated for A minus the absolute NMB calculated for B. In this sequence of calculations, calculating the absolute NMB makes sense because the absolute NMB (separately calculated for the experimental treatment and for the control treatment) represents an intermediate step in the calculation of the incremental NMB (Table 1)

      The values of absolute NMB for apixaban and warfarin (Table 1) are, respectively, 374,066 and $372,608 per patient (calculated according to Equation 2). Hence, the incremental NMB for apixaban vs warfarin is simply the difference of the above two values, i.e. $1,458 per patient.

      References

      [1] Wouters OJ, Naci H, Samani NJ. QALYs in cost-effectiveness analysis: an overview for cardiologists. Heart. 2015 Dec;101(23):1868-73.

      [2] Cowper PA, Sheng S, Lopes RD, Anstrom KJ, Stafford JA, Davidson-Ray L, Al-Khatib SM, Ansell J, Dorian P, Husted S, McMurray JJ, Steg PG, Alexander JH, Wallentin L, Granger CB, Mark DB. Economic Analysis of Apixaban Therapy for Patients With Atrial Fibrillation From a US Perspective: Results From the ARISTOTLE Randomized Clinical Trial. JAMA Cardiol. 2017 Mar 29. doi:10.1001/jamacardio.2017.0065. [Epub ahead of print]

      [3] Hlatky MA. Are Novel Anticoagulants Worth Their Cost? JAMA Cardiol. 2017 Mar 29. doi: 10.1001/jamacardio.2017.0126. [Epub ahead of print]


      Table 1. Cost-effectiveness of apixaban vs warfarin in atrial fibrillation: basecase analysis reported by Cowper et al.(2)


      a) STARTING VALUES

      apixaban: QALYs per patient = 7.94, cost per patient = $22,934

      warfarin: QALYs per patient = 7.54, cost per patient = $4,392

      willingness-to-pay threshold = $50,000/QALY

      b) PHARMACOECONOMIC PARAMETERS

      ICER = ($22,934 - $ 4,392) / (7.94 – 7.54) = 18,542 / 0.40 = $46,355/QALY

      absolute NMB for apixaban = 7.94 x $50,000 – $22,934 = $374,066

      absolute NMB for warfarin = 7.54 x $50,000 – $4,392 = $372,608

      incremental NMB = absolute NMB for apixaban - absolute NMB for warfarin = $374,066 - $372,608 = $1,458

      c) INTERPRETATION

      ICER (equal to $46,355/QALY): favourable because <$50,000/QALY

      incremental NMB (equal to $1,458 per patient): favourable because >0


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    1. On 2015 Oct 01, Friedrich Thinnes commented:

      Plasmalemmal VDAC-1 discussed as amyloid Aß-receptor

      In 2010 I referred to a cell outside located GxxxG motif on the N-terminal helical stretch of plasmalemmal VDAC-1 (voltage dependent anion channel) and to a series of those inside the amyloid Aß peptide. The motifs are known to work as membrane perturbation motifs.

      The hint included a first rational on an interaction of the molecules, VDAC-1 suddenly appearing to figure as a receptor of toxic Aß molecules. Another link to Alzheimer´s Dementia research arose from data pointing to amyloid Aß as an apoptotic opener of cell membrane-integrated VDAC-1 and to counteracting polyphenol preparations from several plants. Together, a revised version of the amyloid cascade hypothesis came up (F.P. Thinnes, 2015; www.futhin.de).

      Accordingly, Alzheimer's disease – downstream of APP processing – can bee seen as resting on some form of extrinsic induced cell death, this via opening cell membrane-standing VDAC-1 (= receptor) and accumulating over time. The process is boosted by excessive amyloid Aß (= agonist) production via increased processing of the amyloid precursor protein (APP) of weakening cells of critical and redundant brain regions.

      Recent data on the slow down of progress of Alzheimer Disease of proven Alzheimer patients in early states by monoclonal anti-amyloid antibodies that neutralize amyloid mono- or oligomers, from my point of view, corroborate plasmalemmal VDAC-1 as a receptor of those (E.R. Siemers et al., 2015)

      However, a study presented by Y.H. Liu et al. (2015) reports on three monoclonal antibody preparations elaborated against different epitopes inside the amyloid Aß peptide. One of those called 6E10 a) in vitro disaggregates artificial amyloid fibrils and thus increases the number of Aß oligomers while b) injection of co-incubates into the lateral ventricle of 6-month-old C57 mice increased the neurotoxicity in vivo. Anyway, to raise amyloid Aß oligomers increases the risk of their docking to plasmalemmal VDAC-1 finally resulting in the induction of accumulating neuronal cell deaths. From here: To raise amyloid Aß oligomers accelerates AD progress.

      The authors call the phenomenon dust-raising. It is tempting to think Alzheimer plaques formation as a salutary form of wipe-the-dust procedure that may even protect from Alzheimer Dementia. In other words: does plaque formation work as a buckler?

      References

      Thinnes, F.P. (2015) Phosphorylation, nitrosation and plasminogen K3 modulation make VDAC-1 lucid as part of the extrinsic apoptotic pathway-Resulting thesis: Native VDAC-1 indispensible for finalisation of its 3D structure. Biochim Biophys Acta. 1848:1410-1416. doi: 10.1016/j.bbamem.2015.02.031. Epub 2015 Mar 11. Review. PMID: 25771449

      Siemers, E. R., Sundella, K. L., Carlson, C., Case, M., Sethuraman, G., Liu-Seifert, H., Dowsett, S. A., Pontecorvo, M. J., Dean, R.A., Demattos, R. (2015) Phase 3 solanezumab trials: Secondary outcomes in mild Alzheimer’s disease patients. Alzheimer’s & Dement. Aug 1. pii: S1552-5260(15)02148-2. doi: 10.1016/j.jalz.2015.06.1893. [Epub ahead of print].

      Liu, Y. H., Bu, X. L., Liang, C. R., Wang, Y. R., Zhang, T., Jiao, S. S., Zeng, F., Yao, X. Q., Zhou, H. D., Deng, J., Wang, Y. J. (2015) An N-terminal antibody promotes the transformation of amyloid fibrils into oligomers and enhances the neurotoxicity of amyloid-beta: the dust-raising effect. J Neuroinflammation. 12:153. doi: 10.1186/s12974-015-0379-4.


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    1. On 2016 Mar 01, Ram Dessau commented:

      Residual symptoms after Lyme neuroborreliosis. The prevalence is unknown? Comment by Ram B. Dessau

      Department clinical microbiology Slagelse Hospital, Region Zealand Ingemannsvej 46, DK4200, Slagelse, Denmark ramd@regionsjaelland.dk

      Dersch et al. have performed a systematic review and meta-analysis on the prevalence and spectrum of residual symptoms in patients after treatment for Lyme neuroborreliosis (LNB)[1]. 5579 bibliographic records were screened and 38 studies were included. An overview of treatment studies reporting residual symptoms is given. The follow up time is about one year concerning most of the studies. The conclusion is that 28% of LNB patients may experience symptoms after treatment. This conclusion may be misinterpreted as associated to LNB or caused by LNB. The 38 treatment studies were not designed to elucidate the association of LNB with residual symptoms, as control groups without LNB were not included.

      Many of the cited symptoms like sensory disturbances, cognitive disturbances, pain and headache are non-specific and even common in the population at large. Thus, it would be of paramount importance to compare the prevalence of events to a control group using the same methods. Only a higher frequency of residual symptoms in the LNB group may indicate association with LNB. Due to the design of the included studies the residual symptoms could as well be due to other causes such as adverse effects of treatment [2].

      Reporting the gross proportion of events may be misleading for other reasons. The load of residual symptoms will depend on not only the number of events for each symptom, but also the number of recorded items and the length of time, where symptoms may occur. The more questions you ask and the higher the gross rate of symptoms will become and eventually the rate of symptoms may approach 100%. Especially if there is also a long time span for the observations.

      Along this line of reasoning Dersch et al. also misinterpreted the studies including a control group[1]. The results of these studies do not “remain inconclusive”, but show comparable results, even if there are differences. These differences are not very large and a substantial proportion of the controls also have a similar level of problems. For example the mean physical component FS36 score in LNB was 44(9) compared to 51(6) in controls[3]. A significant difference in mean score was found, but the size of the standard deviation show that the distribution of scores in the two groups have a large overlap. Given that the 95% interval is about 2 SD then FS36 score in LNB is 26-62 and in controls 39-63. Even if LNB patients have “significantly” lower FS36 score than controls, this is not a large difference. Thus a weak or absent association alone could explain that some studies do not report statistical differences and some do due to random variation. Thus, residual symptoms associated with LNB are probably quite rare, if at all.

      Grouping together any symptoms without considering a variable relevance to LNB is problematic. For example, it was found in Swedish children that residual symptoms were persistent nerve defects such as facial palsy, but not nonspecific subjective symptoms [4]. Thus, it would be important to distinguish different types of symptoms and their severity. The study by Dersch et al. adds to a large volume of uncontrolled case reports and case series overstating the possible risk of symptoms associated with Lyme borreliosis[5]. This may contribute to unnecessary anxiety about Lyme borreliosis.

      It is acknowledged that Dersch et al [1] do state important reservations about especially the "possible" case definitions, as patients with other conditions could contribute to the high load of reported symptomps.

      Conclusion The prevalence of residual symptoms associated with LNB after treatment may not be concluded from the study by Dersch et al [1] because control groups are missing. A meaningfull interpretation is not possible. The authors should have focused on the available controlled studies instead.

      Conflict of interests: None to declare.

      References

      1.Dersch R, Sommer H, Rauer S, Meerpohl JJ. Prevalence and spectrum of residual symptoms in Lyme neuroborreliosis after pharmacological treatment: a systematic review. J Neurol 2015 Oct 12.

      2.Dersch R, Freitag MH, Schmidt S, Sommer H, Rauer S, Meerpohl JJ. Efficacy and safety of pharmacological treatments for acute Lyme neuroborreliosis - a systematic review. Eur J Neurol 2015 Sep;22:1249-59.

      3.Eikeland R, Mygland A, Herlofson K, Ljostad U. European neuroborreliosis: quality of life 30 months after treatment. Acta Neurol Scand 2011 Nov;124:349-54.

      4.Skogman BH, Glimaker K, Nordwall M, Vrethem M, Odkvist L, Forsberg P. Long-term clinical outcome after Lyme neuroborreliosis in childhood. Pediatrics 2012 Aug;130:262-9.

      5.Baker CJ, et al. Final report of the Lyme disease review panel of the infectious diseases society of America (http://www.idsociety.org).2010.


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    1. On 2018 Feb 01, Andrew Willetts commented:

      The poor quality of the modelling studies of 3,6-diketocamphane monooxygenase (3,6-DKCMO) presented by Isupov et alresults from a combination of a number of well characterised deficiencies (1) in relevant structural and biochemical features that were used to develop their proposals for this Type II Baeyer-Villiger monooxygenase (2) from camphor-grown Pseudomonas putida NCIMB 10007.

      An important contributory factor that stymies their studies is Isupov et al’s mistaken understanding of the nature and significance of the facial diastereoselectivity of the hydride transfer that occurs between the donated FNR cofactor and the enzyme in the active site of this flavin-dependent two-component monooxygenase (fd-TCMO [3]). Both Isupov et al’s structural and modelling studies place a significant dependence on comparative data for the luciferase from Vibrio harveyi, the first fd-TCMO to be recognised and well-characterised at both the structural and functional levels (4). However, while it has been conclusively shown that 3,6-DKCMO and the two enantiocomplementary 2,5-diketocamphane monooxygenases (2,5-DKCMOs) from camphor-grown P.putida NCIMB 10007 deploy requisite FNR exclusively in (si)-facial hydride transfers (5-7), the luciferase from V.harveyi (8,9) and all other bacterial luciferases thus characterised to date (10), deploy FNR exclusively in (re)-facial hydride transfers. This fundamental dichotomy between 3,6-DKCMO and the luciferase is not taken into account by Isupov et al who incorrectly state that ‘all enzymes of the bacterial luciferase superfamily catalyse their reaction on the si side of the ring’.

      Consequential errors that result from this significant misunderstanding occur principally, but not exclusively, in Sections 3.7 (Comparison with other bacterial luciferase-family proteins) and 3.8 (The reaction mechanism) of Isupov et al’s paper. Typically, if this important biochemical difference had been appreciated, then Figure 5 of their paper might have been interpreted differently. Also, because 3,6- and the isoenzymic 2,5-DKCMOs have been shown to exhibit the same extremely high (si)-facial diastereoselectivity (5-7) with respect to the hydride transfers that characterise key biochemical events in their active sites, the outcome of which is the successive formation and stabilisation of their respective Criegee intermediates (11), Isupov et al’s prediction that these enantiocomplementary enzymes will exhibit ‘a different mode of cofactor binding’ seems highly unlikely.

      The established differences in facial diastereoselectivity between these particular fd-TCMOs may help to explain why the commercially available (Sigma Aldrich) flavin reductase component of the luciferase from Vibrio harveyi failed to promote any significant electrophilic biooxidation of a small number of tested organosulfides by purified preparations of 3,6-DKCMO (12). Similar low levels of product(s) were detected in both experimental and equivalent control reactions (eg, <0.01% sulfoxide and <0.002% sulfone formed after 30h incubation with methyl phenyl sulphide +/- 3,6-DKCMO). It was concluded that the negligible levels of oxidation observed were principally, if not exclusively, the result of abiotic autooxidation, and consequently this particular research initiative was abandoned in mid-1996. Also, because they were outside the remit of the PhD programme of Jean Beecher (supervisor Dr Andrew Willetts, degree awarded 1997, University of Exeter), no equivalent studies of potential nucleophilic biooxidation of ketone substrates were considered or undertaken (13,14). Consequently, Dr Beecher’s thesis is notable for the total absence of any relevant content relating to either electrophilic or nucleophilic biooxidations with a hybrid P.putida-V.harveyi multienzyme complex. The claims in Isupov et al that ‘the commercially available Vibrio harveyi flavin reductase (Sigma) was able to demonstrate activity with purified 36DKCMO oxygenating enzyme in biotransformation reactions (McGhie, 1998)’, and that ‘commercially available NADH-FMN oxidoreductase from Vibrio harveyi has successfully been used for reduction of cofactor in activity measurements (McGhie, 1998)’ are incompatible with the above pre-1998 outcomes. McGhie is an accredited co-author of Isupov et al’s paper, and McGhie (1998) is in reference to her PhD awarded by the University of Exeter (supervisor Dr Littlechild). Most significantly, there is a total absence of either supporting data, or corresponding experimental protocols, or discussion relevant to both electrophilic and nucleophilic biooxidations by a hybrid P.putida-V.harveyimultienzyme complex in McGhie’s 1998 thesis, the sole relevant entry being a single sentence on p74 which claims that the hybrid complex can support ‘lactonising activity’ (= nucleophilic biooxidation), citing the source as ‘Beecher, personal communication’, which is clearly inconsistent with Jean Beecher’s pre-1998 studies (vide infra). The incorrect claim included in McGhie’s PhD thesis and the equivalent two incorrect claims included in Isupov et al are clearly interrelated. References. 1. Willetts, A. & Kelly, D.P. (2016). Microorganisms, 4, 38: 2. Willetts, A. (1997). Trends Biotechnol., 15, 55-62: 3. Ellis, H.R. (2010). Arch. Biochem. Biophys. , 497, 1-12: 4. Campbell, Z.T., Weichsel, A., Montfort, W.R. & Baldwin, T.O. (2008). Biochem. 48, 6085-6094: 5. Grogan, G. (1995). PhD Thesis, University of Exeter: 6. Beecher, J.E., Grogan, G., Roberts, S. & Willetts, A. (1996). Biotechnol. Lett., 18, 571-576: 7. Kelly, D.R., Knowles, C.J., Mahdi, J.G., Wright, M.A., Taylor, I.N., Roberts, S., Wan, P., Grogan, G., Pedragosa-Moreau, S. & Willetts, A.(1996). Chem. Commun., 20, 2333-2334: 8. Yamazaki, S., Tsai, L. & Stadyman, T.C. (1980). J. Biol. Chem., 255, 9025-9027: 9. Yamazaki, S., Tsai, L. & Stadyman, T.C., Teshima, T., Nakaji, A. & Shiba, T. (1985). Proc. Nat. Acad. Sci. USA, 82, 1364-1366: 10. Villa, R. & Willetts, A. (1997). J. Mol. Catal. B: Enzym., 2, 193-197:11. Yachnin, B.J., Sprules, T., McEvoy, M.B., Lau, P.C.K. & Berghuis, A.M. (2012). J. Amer. Chem. Soc., 134, 7788-7795: 12. Willetts, A. & Beecher, J.E. (1995; 1996). Laboratory records, unpublished data: 13. Willetts, A. (1996). Laboratory records, unpublished data: 14. Beecher, J.E. (1997). PhD Thesis, University of Exeter.


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    1. On 2015 Nov 28, Friedrich Thinnes commented:

      Arguments for plasmalemmal VDAC-1 to form the channel part of VRAC

      The inclusion of VDAC-1 = voltage dependent anion channel of isotype-1 into the plasma membrane of mammalian cells was first demonstrated in 1989, this by its immuno-topochemical flagging on human B lymphocyte, and those data were meanwhile corroborated by several laboratories using manifold approaches world wide (1-4).

      Concerning the function of plasmalemmal VDAC-1 (5-9) it has been shown that the channel is involved in cell volume regulation. Cell outside applied monoclonal mouse anti-human type-1 porin antibodies blocked the RVD of HeLa cells, proving that VDAC-1 is involved in the process. HeLa cells pre-incubated with the antibodies dramatically increased their volume within about 1 min after a stimulus by hypotonic Ringer solution, but did not move backward towards their starting volume, thus indicating abolished RVD.

      To notice, corresponding blocking effects were induced by the established anion channel inhibitor DIDS or BH4BClXL peptides, respectively. Video camera monitoring of cell size over time was used in this direct and noninvasive approach (9; www.futhin.de Supplement 1). Corroboration of these data came from the laboratory of Dr. R. Boucher (10) using VDAC knock out mice, this study, furthermore, pointing to the channel as an ATP pathway.

      First data concerning the involvement of plasmalemmal VDAC-1 in the apoptotic process came from Dr. F. Elinder´s laboratory, demonstrating that opening of plasma membrane voltage-dependent anion channels (VDAC) precedes caspase activation in neuronal apoptosis induced by toxic stimuli (11). In line, the laboratory of Dr. Raquel Marin demonstrated that voltage dependent anion channel (VDAC-1) participates in amyloid Aß-induced toxicity and also interacts with the plasma membrane estrogen receptor alpha (mERa) in septal and hippocampal neurons (12). Noteworthy: Alzheimer Disease disproportionally affects women.

      To notice, plasmalemmal VDAC and amyloid Aß, too, carry GxxxG peptide interaction motifs (2-4).

      Concerning VDAC-1 agonists there are many data on low molecular weight agonists working on VDAC in varying settings, which may be helpful in studies on VRAC: DIDS, cholesterol, ATP, König's polyanion, dextran sulfate, Ga3+, Al3+, Zn2+, polyamines, compound 48/80, ruthenium red, fluoxetine, cisplatin, curcumin. Further studies looked for corresponding effect of peptides e.g. BH4-BClXL peptides, peptides including the free N-terminal part of VDAC-1 and amyloid Aβ peptides (4,9-16).

      There is increasing evidence on interactions of VDAC-1 and proteineous modulators: e.g. α-synuclein shows high affinity interaction with voltage dependent anion channel, suggesting mechanisms of regulation and toxicity in Parkinson Disease (17). It has, furthermore, been shown that interaction of human plasminogen kringle 5 and plasmalemmal VDAC-1 links the channel to the extrinsic apoptotic pathway (18). Finally, an early study pointed to cancer cell cycle modulation by functional coupling between sigma-1 receptors and Cl- channels, here GxxxG motifs putatively playing a role (19,20).

      Noteworthy, a SwissProt alignment of the LRC8A-D sequences shows two GxxxG motifs in a critical loop of LRC8E (Thinnes, unpublished).

      Conclusion

      While the expression of VDAC-1 in in the plasma membranes is beyond reasonable doubt (1-4) its function in this compartment is still in debate (5-20, 21-23).

      VDAC-1 shows ubiquitous multi-toplogical expression, standing in outer mitochondrial membranes, the endoplasmic reticulum, as well as in the plasmalemma. To fulfill putatively varying functions in differing compartments, from the beginning on, my laboratory postulated proteineous channel modulators, which in varying heteromer complexes may adjust membrane-standing VDAC-1 to local needs.

      Meanwhile, several of those come to the fore. VRAC/VSOAC candidates appear to be amongst them.

      Finally, concerning medical relevance VDAC-1 complexes are involved in the pathogenesis of e.g. Cystic Fibrosis (13), Alzheimer Disease (3,4,12) and cancer (4).

      References

      1) De Pinto V, Messina A, Lane DJ, Lawen A. FEBS Lett. 2010 May 3;584(9):1793-9. doi: 10.1016/j.febslet.2010.02.049. Epub 2010 Feb 23. Review. PMID: 20184885 Free Article

      2) Thinnes FP. Biochim Biophys Acta. 2015 Jun;1848(6):1410-6. doi: 10.1016/j.bbamem.2015.02.031. Epub 2015 Mar 11. Review. PMID: 25771449

      3) Thinnes FP. Front Aging Neurosci. 2015 Sep 30;7:188. doi: 10.3389/fnagi.2015.00188. eCollection 2015. No abstract available. PMID: 26483684 Free PMC Article

      4) Smilansky A, Dangoor L, Nakdimon I, Ben-Hail D, Mizrachi D, Shoshan-Barmatz V. J Biol Chem. 2015 Nov 5. pii: jbc.M115.691493. [Epub ahead of print] PMID: 26542804 Free Article

      5) Morris AP, Frizzell RA. Am J Physiol. 1993 Apr;264(4 Pt 1):C977-85. PMID: 7682780

      6) Blatz AL, Magleby KL. Biophys J. 1983 Aug;43(2):237-41. PMID: 6311302 Free PMC Article

      7) Dermietzel R, Hwang TK, Buettner R, Hofer A, Dotzler E, Kremer M, Deutzmann R, Thinnes FP, Fishman GI, Spray DC, et al. Proc Natl Acad Sci U S A. 1994 Jan 18;91(2):499-503. PMID: 7507248 Free PMC Article

      8) Schwiebert EM, Egan ME, Hwang TH, Fulmer SB, Allen SS, Cutting GR, Guggino WB. Cell. 1995 Jun 30;81(7):1063-73. PMID: 7541313 Free Article

      9) Thinnes FP, Hellmann KP, Hellmann T, Merker R, Brockhaus-Pruchniewicz U, Schwarzer C, Walter G, Götz H, Hilschmann N. Mol Genet Metab. 2000 Apr;69(4):331-7. PMID: 10870851 10) Okada SF, O'Neal WK, Huang P, Nicholas RA, Ostrowski LE, Craigen WJ, Lazarowski ER, Boucher RC. J Gen Physiol. 2004 Nov;124(5):513-26. Epub 2004 Oct 11. PMID: 15477379 Free PMC Article

      11a) Elinder F, Akanda N, Tofighi R, Shimizu S, Tsujimoto Y, Orrenius S, Ceccatelli S. Cell Death Differ. 2005 Aug;12(8):1134-40. PMID: 15861186 Free Article

      11b) Akanda N, Tofighi R, Brask J, Tamm C, Elinder F, Ceccatelli S. Cell Cycle. 2008 Oct; 7(20):3225-34. Epub 2008 Oct 20. PMID: 18927501

      12a) Marin R, Ramírez CM, González M, González-Muñoz E, Zorzano A, Camps M, Alonso R, Díaz M. Mol Membr Biol. 2007 Mar-Apr;24(2):148-60. PMID: 17453421

      12b) Herrera JL, Diaz M, Hernández-Fernaud JR, Salido E, Alonso R, Fernández C, Morales A, Marin R. J Neurochem. 2011 Mar;116(5):820-7. doi: 10.1111/j.1471-4159.2010.06987.x. Epub 2011 Jan 7. Review. PMID: 21214547 Free Article

      13) Thinnes FP. Mol Genet Metab. 2014 Apr;111(4):439-44. doi: 10.1016/j.ymgme.2014.02.001. Epub 2014 Feb 13. Review. PMID: 24613483

      14 Thinnes FP. PMID: 15781203 [PubMed - indexed for MEDLINE] Mol Genet Metab. 2005 Apr;84(4):378.

      15) Thinnes FP. Mol Genet Metab. 2009 Jun;97(2):163. doi: 10.1016/j.ymgme.2009.01.014. Epub 2009 Feb 3. No abstract available. PMID: 19251445

      16) Thinnes FP. Am J Physiol Cell Physiol. 2010 May;298(5):C1276. doi: 10.1152/ajpcell.00032.2010. No abstract available. PMID: 20413797 Free Article

      17) Rostovtseva TK, Gurnev PA, Protchenko O, Hoogerheide DP, Yap TL, Philpott CC, Lee JC, Bezrukov SM. J Biol Chem. 2015 Jul 24;290(30):18467-77. doi: 10.1074/jbc.M115.641746. Epub 2015 Jun 8. PMID: 26055708

      18) Li L, Yao YC, Gu XQ, Che D, Ma CQ, Dai ZY, Li C, Zhou T, Cai WB, Yang ZH, Yang X, Gao GQ. J Biol Chem. 2014 Nov 21;289(47):32628-38. doi: 10.1074/jbc.M114.567792. Epub 2014 Oct 8. PMID: 25296756 Free PMC Article

      19) Renaudo A, L'Hoste S, Guizouarn H, Borgèse F, Soriani O. J Biol Chem. 2007 Jan 26;282(4):2259-67. Epub 2006 Nov 22. PMID: 17121836 Free Article

      20) Chu U, Ruoho AE. Mol Pharmacol. 2015 Nov 11. pii: mol.115.101170. [Epub ahead of print] PMID: 26560551 Free Article

      21) Liu HT, Tashmukhamedov BA, Inoue H, Okada Y, Sabirov RZ. Glia. 2006 Oct;54(5):343-57. Erratum in: Glia. 2006 Dec;54(8):891.

      22) Sabirov RZ, Merzlyak PG. Biochim Biophys Acta. 2012 Jun;1818(6):1570-80. doi: 10.1016/j.bbamem.2011.09.024. Epub 2011 Oct 1. Review. PMID: 21986486 Free Article

      23) Pedersen SF, Klausen TK, Nilius B. Acta Physiol (Oxf). 2015 Apr;213(4):868-81. doi: 10.1111/apha.12450. Epub 2015 Jan 28.


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    1. On 2016 Aug 17, Kirk O'Reilly commented:

      McIntyre et al. have published a series of papers evaluating the use of soil bioretention systems to reduce the toxicity of stormwater and highway runoff (McIntyre et al. 2014, 2016, 2016b). Their recent paper (McIntyre et al. 2016) investigates the use of soil bioretention to treat artificial runoff from a test plot treated with a refined tar sealant (RTS). What readers may not know is that there is an on-going controversy concerning the environmental implications of RTS use (LeHuray 2015; USGS 2016). According to McIntyre’s acknowledgement, U.S. Geological Survey personnel responsible for the agency’s effort to ban RTS assisted in project planning. The goal of this comment is not to criticize McIntyre’s research on the use of soil bioretention systems but to discuss the results in the context of other studies so that the paper is not misused by those advocating for RTS product bans. The technical basis for these comments are summarized in Exponent (2016).

      Key Points:

      The title overstates the toxicity of RTS runoff.

      The title suggests that sealant runoff causes “severe” toxicity. But severe is neither defined nor used in the text of the article. Severe toxicity is not a commonly used term in aquatic toxicology. Use of “acute toxicity” or just “toxicity” in the title would be less inflammatory and more consistent with the study results.

      As noted by the authors in a prior publication (McIntyre et al. 2014), “Developing fish embryos are particularly vulnerable to the harmful effects of chemical contaminants and have long been a focus for toxicity screening. More recently, model species such as the zebrafish have provided an increasingly sophisticated experimental context for evaluating the developmental toxicity of individual chemical constituents in stormwater.” McIntyre et al. (2016b) says that their tests measure subtle biological effects. A positive bioassay result with a particularly vulnerable fish embryo test system is insufficient to support the suggestion of severe toxicity.

      While the survival of another test species, juvenile Coho salmon, was less in runoff from a sealant test plot than the control, only the runoff collected within a few hours of sealant application killed all the organisms. Mortality decreased substantially for subsequent samples and remained significantly different from controls with runoff collected two weeks but not three weeks after application.

      The toxicity of sealant runoff is consistent with the toxicity of runoff from unsealed surfaces.

      McIntyre et al. (2014, 2016b) describe tests conducted on highway runoff collected during six storm events. Two of the six stormwater samples killed all Zebrafish embryos, and a third sample resulted in a significant reduction in survival. All six of the stormwater samples caused sublethal effects similar to those discussed in the RTS paper.

      Greenstein et al (2004) tested the toxicity of artificial runoff from an operating asphalt parking lot in Southern California. There was no evidence that RTS was ever applied on the lot. Using a sensitive marine aquatic bioassay, sea urchin egg fertilization, toxicity was noted in all runoff samples.

      Soil Bioretention treatment of RTS and highway runoff can eliminate toxicity and significantly reduced the response of sensitive molecular indicators.

      Soil bioretention is a sustainable approach in which runoff is filtered by soil. It mimics natural processes that can reduce the toxicity of runoff from urban surfaces including sealed parking lots.

      Acknowledgment

      The author of this comment has conducted research funded by the Pavement Coating Technology Council.

      References

      McIntyre JK, Edmunds RC, Anulacion BF, Davis JW, Incardona JP, Stark JD, Scholz NL. 2016. Severe coal tar sealcoat runoff toxicity to fish and reversal by bioretention filtration. Environmental Science & Technology 50(3): 1570–1578.

      LeHuray, A. 2015. In response to Bales (2014). Integrated Environmental Assessment and Management, 11(2), 185–187.

      USGS. 2016. Information Quality - Information Correction Request. At: https://www2.usgs.gov/info_qual/archives/coal_tar_sealants.html

      Exponent 2016. Summary of McIntyre et al. 2016. “Severe Coal Tar Sealcoat Runoff Toxicity to Fish Is Prevented by Bioretention Filtration” Environ. Sci. Technol. 50:1570−1578. Pavement Coatings Technology Council. 2016-08-14. URL:http://www.pavementcouncil.org/wp-content/uploads/2016/08/Tech-Memo-McIntyre-2016-review-Final.pdf. Accessed: 2016-08-14. (Archived by WebCite® at http://www.webcitation.org/6jlOpIS8t)

      McIntyre JK, Davis J, Incardona J, Stark J, Anulacion B, Scholz N. 2014. Zebrafish and clean water technology: Assessing soil bioretention as a protective treatment for toxic urban runoff. Science of the Total Environment 500:173–178. Open Access: http://www.sciencedirect.com/science/article/pii/S0048969714012455

      McIntyre JK, Edmunds RC, Redig MG, Mudrock EM, Davis JW, Incardona JP, Stark JD, Scholz NL. 2016b. Confirmation of stormwater bioretention treatment effectiveness using molecular indicators of cardiovascular toxicity in developing fish. Environmental Science & Technology 50(3): 1561–1569.

      Greenstein D, Tiefenthaler L, and Bay S. 2004. Toxicity of parking lot runoff after simulated rainfall Arch Environ Contam Toxicol. 47:199–206.


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    1. On 2017 Feb 08, Tony Gardner-Medwin commented:

      This paper (Gomes et al., 2016) raises a dilemma for readers. If well founded, it clearly merits much work to understand it and its implications. But the conclusions conflict so strongly with conventional wisdom that it is tempting to dismiss it as probably somehow incorrect. All credit therefore to Barbour (2016) for critiquing it and pinpointing questions that clearly need answering. Hopefully, both the authors and others with their own perspectives may contribute to clarify the situation.

      Broadly I concur with the points Barbour raises. I would add however what seems possibly a key oversight in the papers from Gomes' group. This is in the argument that observed filter characteristics and cell input impedances that fall off with the square root of frequency at high frequencies are indicative of diffusion processes, rather than R-C elements as in conventional modelling. Cable equations for the input impedance of even the simplest dendritic model (with uniform characteristics and a length of many space constants: V'' = Λ<sup>-2</sup> (1+ jωτ) V, I= -V'/R, Z = RΛ / √(1+jωτ), |Z| = RΛ (1+ω<sup>2</sup> τ<sup>2</sup> )<sup>-0.25</sup> ) predict just such a relation (Rall & Rinzel, 1973: see equations A13, A15 for the more general solution with dendrites of any length). So the argument of Gomes et al. that the data implicate diffusion processes (which can also lead to square root relationships) seems to collapse.

      Though the external pathway for current generated by neurons is usually regarded as largely within interstitial space, it is not exclusively so, even at low frequencies or DC. Around 6% of DC current passed through rat cortex is accounted for by K<sup>+</sup> flux (Gardner-Medwin, 1983). Since current in interstitial space would only account for a K<sup>+</sup> flux of 1.2%, the difference is presumably due to trans-cellular passage of at least 5% of long distance current flow, probably largely through the astrocytic syncytium. This is a small adjustment to the notion that low frequency currents are largely extracellular, but it does represent a 5-fold enhancement of K<sup>+</sup> flux driven by an electro-chemical gradient, which when applied to chemical (concentration) gradients implies greatly enhanced K<sup>+</sup> dispersal around regions of build up in interstitial space, compared with diffusion alone - the so-called 'spatial buffer' mechanism for K<sup>+</sup> .

      An additional, larger, component of macroscopic cortical conductance appears to arise from extracellular but not interstitial pathways, possibly via perivascular tissue. This may not have been studied in detail, but is indicated by the fact that measured cortical impedance is in at least some circumstances only around half what would be expected on the basis of measurements of the volume and tortuosity of local interstitial space around a microelectrode (Gardner-Medwin, 1980; Nicholson & Phillips, 1981). Barbour (2016) points out that these two ways of approaching impedance both give an order of magnitude hugely below that of Gomes et al. (2016). Taking account of interstitial tortuosity shows, however, that they do differ by a factor of about 2.

      Barbour B. (2016) Analysis of claims that the brain extracellular impedance is high and non-resistive. https://arxiv.org/abs/1612.08457

      Gardner-Medwin A.R. (1980) Membrane transport and solute migration affecting the brain cell microenvironment. Neurosci. Res. Progr. Bull. 18:208-226

      Gardner-Medwin A.R. (1983) A study of the mechanisms by which potassium moves through brain tissue in the rat. J Physiol 335:353-374

      Gomes J.-M., C. Bédard, S. Valtcheva, M. Nelson, V. Khokhlova, P. Pouget, L. Venance, T. Bal, and A. Destexhe (2016) Intracellular impedance measurements reveal non-ohmic properties of the extracellular medium around neurons. Biophysical Journal, 110(1):234-246

      Nicholson C. & Phillips J.M. (1981) Ion diffusion modified by tortuosity and volume fraction in the extracellular microenvironment of the rat cerebellum. J. Physiol. 321:225-257

      Rall W. & Rinzel J. (1973) Branch input resistance and steady attenuation for input to one branch of a dendritic neuron model. Biophysical Journal 13(7):648-688


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    1. On 2016 Mar 15, Lionel Christiaen commented:

      In this article, the author presents an extensive account of the extreme diversity of adult anatomies and life histories encountered across the thousands of tunicate species that roam the oceans worldwide, and occupy multitudes of ecological niches. The author then emphasizes that tunicate genomes are markedly more compact and evolve faster than the genomes of their chordate relatives, the cephalochordates and vertebrates. Several recent studies support this notion, and the argument that rapid genome diversification may have fostered tunicate evolution is reasonable. Since the early development of tunicates, in particular ascidians, has been considerably simplified and streamlined in a manner analogous to what is observed in nematodes, the author argues that tunicates must have lost most ancestral genomic, developmental and anatomical features that could inform reconstruction of the evolutionary history of vertebrate traits. We wish to provide alternative interpretations and propose a more inclusive approach to the problems posed by tunicates in building models for the evolution of vertebrates. First, the argument about faster evolutionary rates implies that every part of the genome evolves at similarly faster rates; yet, phylogenomic analyses of concatenated coding sequences unequivocally revealed that tunicates and vertebrates form a monophyletic group referred to as olfactores [1, 2]. Moreover, conserved anatomical features including the notochord, the dorsal neural tube and the pharyngeal gill slits depend upon ancestral regulatory inputs from conserved transcription factors, as noted by the author. These simple examples argue against a complete relaxation of evolutionary constraints on ancestral features in tunicates, especially in ascidians. In other words, high average rates of sequence evolution and profound morphological changes are not incompatible with deep conservation of cellular and molecular mechanisms for embryonic patterning and cell fate specification. Instead, the apparent incompatibility between high rates of genome divergence and the maintenance of ancestral olfactores features over long evolutionary distances hints at the notion of developmental system drift (DSD), whereby mechanistically connected developmental features may be conserved between distantly related species exhibiting extensive divergence of the intervening processes [3]. Ascidians provide an attractive test-bed to study DSD since their early embryos have barely changed in almost half a billion years, despite considerable genomic divergence [4]. This is a lively area of research as illustrated by the 11 tunicate genomes recently made openly available to the worldwide research community [4-6]. We argue that comparative developmental studies are poised to identify additional features conserved between tunicates and vertebrates, such as those recently reported for the neural crest, the cranial placodes and the cardiopharyngeal mesoderm [7-10]. These "islands of conservation" will continue to shed light on the mechanisms of tunicate diversification and the deep evolutionary origins of the vertebrate body plan.

      REFERENCES 1. Delsuc, F., Brinkmann, H., Chourrout, D., and Philippe, H. (2006). Tunicates and not cephalochordates are the closest living relatives of vertebrates. Nature 439, 965-968. 2. Putnam, N.H., Butts, T., Ferrier, D.E., Furlong, R.F., Hellsten, U., Kawashima, T., Robinson-Rechavi, M., Shoguchi, E., Terry, A., Yu, J.K., et al. (2008). The amphioxus genome and the evolution of the chordate karyotype. Nature 453, 1064-1071. 3. True, J.R., and Haag, E.S. (2001). Developmental system drift and flexibility in evolutionary trajectories. Evolution & development 3, 109-119. 4. Stolfi, A., Lowe, E.K., Racioppi, C., Ristoratore, F., Brown, C.T., Swalla, B.J., and Christiaen, L. (2014). Divergent mechanisms regulate conserved cardiopharyngeal development and gene expression in distantly related ascidians. eLife 3, e03728. 5. Voskoboynik, A., Neff, N.F., Sahoo, D., Newman, A.M., Pushkarev, D., Koh, W., Passarelli, B., Fan, H.C., Mantalas, G.L., Palmeri, K.J., et al. (2013). The genome sequence of the colonial chordate, Botryllus schlosseri. eLife 2, e00569. 6. Brozovic, M., Martin, C., Dantec, C., Dauga, D., Mendez, M., Simion, P., Percher, M., Laporte, B., Scornavacca, C., Di Gregorio, A., et al. (2016). ANISEED 2015: a digital framework for the comparative developmental biology of ascidians. Nucleic acids research 44, D808-818. 7. Abitua, P.B., Gainous, T.B., Kaczmarczyk, A.N., Winchell, C.J., Hudson, C., Kamata, K., Nakagawa, M., Tsuda, M., Kusakabe, T.G., and Levine, M. (2015). The pre-vertebrate origins of neurogenic placodes. Nature 524, 462-465. 8. Abitua, P.B., Wagner, E., Navarrete, I.A., and Levine, M. (2012). Identification of a rudimentary neural crest in a non-vertebrate chordate. Nature 492, 104-107. 9. Diogo, R., Kelly, R.G., Christiaen, L., Levine, M., Ziermann, J.M., Molnar, J.L., Noden, D.M., and Tzahor, E. (2015). A new heart for a new head in vertebrate cardiopharyngeal evolution. Nature 520, 466-473. 10. Stolfi, A., Ryan, K., Meinertzhagen, I.A., and Christiaen, L. (2015). Migratory neuronal progenitors arise from the neural plate borders in tunicates. Nature 527, 371-374.


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    1. On 2016 Feb 29, Gary Goldman commented:

      Marin et al report a vaccine effectiveness (VE) of 81% (95% C.I.: 78-84) for the one-dose varicella vaccination protocol. [1] This figure is biased high and declines rapidly as the vaccine is widely used and exogenous boosting becomes rare. Many of the clinical trials and studies that reported VE were conducted within the first few years of the start of varicella vaccination—during a time period when vaccinees were additionally boosted by exogenous exposures to those shedding wild-type (or natural) varicella-zoster virus during annual outbreaks. Annual VE, derived from secondary family attack rate (SFAR) data among contacts aged <20 years reporting to the Antelope Valley Varicella Active Surveillance Project (VASP), demonstrated an annual increase from 87% in 1997 to 96% in 1999 (the last year that varicella displayed its characteristic seasonality), then declined to 85% and 74% in 2000 and 2001, respectively, when exogenous boosting substantially decreased. [2]

      The conclusion given in the Meta-analysis by Marin et al states that several studies reported a lower risk for herpes zoster among varicella vaccinated children “and a decline in herpes zoster incidence among cohorts targeted for varicella vaccination.” [1] The later part of that statement is patently false. There are two confounders in the cited studies that contribute to this erroneous conclusion and a consideration of these confounders helps to explain why the VASP study [3] (referenced in the Meta-analysis [1]) reports that (a) the 2000-2006 HZ incidence increased by 63% among 10- to 19-year olds and (b) HZ incidence decreased by 32% from 98.3/100,000 person-years (p-y) in 2006 to 66.7/100,000 p-y in 2010, with “substantial fluctuation in annual HZ rates.” [3]

      The authors of both the Meta-analysis [1] and supporting reference [3] have erroneously assumed that the HZ cases reported to the VASP represent 100% reporting completeness. However, using capture-recapture with two ascertainment sources (schools and health cares), it was demonstrated that varicella cases among 2- to 18-year-olds were under-reported by approximately 45%. [4] Likewise, it can be shown that VASP also experienced approximately 50% under-reporting of HZ cases [2], leading to the Marin et al study [3] reporting incidence rates that are one-half the actual rates. HZ incidence rates that have not been ascertainment corrected simply reflect the incidence of reported HZ cases to the VASP and not the HZ incidence rate in the community. It is invalid to compare the uncorrected VASP-reported HZ rates to those rates reported by other studies that possess much higher case ascertainment. [5]

      Additionally, the >10- to 19-year-old age category consists of three different cohorts with widely differing HZ incidence rates. Marin et al [3] only considers the mean HZ incidence rate for each age category instead of stratifying by (1) those still susceptible to varicella and never vaccinated (0 cases/100,000 p-y); (2) those that have had a prior history of wild-type varicella who exhibit increasing HZ incidence rates from approximately 120 cases/100,000 p-y to 500 cases/100,000 p-y (in the absence of exogenous boosting); and (3) those vaccinated who exhibit an HZ incidence rate less than 120 cases/100,000 p-y.

      In summary, unless HZ incidence rates are ascertainment corrected [5], such rates will erroneously be reported as “lower” than other studies. [1] Also, reporting the mean HZ incidence of a bimodal distribution masks the widely differing incidence rates among those vaccinated and those with a prior history of varicella. Further, this invalid mean masks the significant effects of exogenous boosting. [7] Varicella vaccination innoculates children with the Oka-strain VZV. When these children are exposed to natural varicella or herpes zoster in adults, they may additionally harbor the natural VZV strain. Both strains are subject to reactivation as HZ. This is another confounder in the reporting of HZ incidence rates. Health officials initially believed that only a single dose of varicella vaccine would provide long-term protection and have negligible impact on the incidence of HZ. These assumptions are incorrect and have led to a continual cycle of treatment and disease. The shingles (herpes zoster) vaccine now provides the boosting to postpone or suppress the reactivation of HZ in adults aged 60 years and older—a substitute for the exogenous boosting that was prevalent in the pre-varicella vaccination era at no cost. [6]

      References:

      [1] Marin M, Marti M, Kambhampati A, Jeram SM, Seward JF. Global varicella vaccine effectiveness: A meta-analysis. Pediatrics Feb. 16, 2016; DOI: 10.1542/peds.2015-3741. Marin M, 2016

      [2] Goldman GS. Universal Varicella Vaccination: Efficacy Trends and Effect on Herpes Zoster. Int J Toxicol 2006 Sep-Oct; 25(5):313-317. Goldman GS, 2005

      [3] Marin M. Civen R, Zhang J, et al. Update on incidence of herpes zoster among children and adolescents following implementation of varicella vaccination, Antelope Valley, CA. 2000-2010. Presented at IDweek 2015, October 7-11, 2015; San Diego, CA.

      [4] Seward JF, Watson BM, Peterson CL, Mascola L, Pelosi JW, Zhang JX, et al. Varicella disease after introduction of varicella vaccine in the United States, 1995-2000. JAMA 2002; 287(5):606-611. Seward JF, 2002

      [5] Hook EB, Regal RR. The value of capture-recapture methods even for apparent exhaustive surveys: the need for adjustment for source of ascertainment intersection in attempted complete prevalence studies. Am J Epidemiol 1992; 135:1060-1067. Hook EB, 1992

      [6] Goldman GS, King PG. Review of the United States universal varicella vaccination program: Herpes-zoster incidence rates, cost effectiveness, and vaccine efficacy based primarily on the Antelope Valley Varicella Active Surveillance Project data. Vaccine 2013; 31(13):1680-1694. Goldman GS, 2013

      [7] Guzzetta G, Poletti P, Del Vava E, et al. Hope-Simpson’s progressive immunity hypothesis as a possible explanation for herpes –zoster incidence data. Am J Epidemiol 2013; 77(10):1134-1142. Guzzetta G, 2013


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