- Sep 2022
-
-
low=1
at the root? { tiles: [...], low: 1 }??
-
add it permanently,
what does this involve? what are the steps
-
callback parameter
query parameter?
-
-
4virology.net 4virology.net
-
VBRC
NARid: https://www.oxfordjournals.org/nar/database/summary/725
NARCategory: Genomics Databases (non-vertebrate) Subcategory: Viral genome databases
Tags
Annotators
URL
-
-
gigadb.org gigadb.orgGigaDB1
-
Dataset types
NARid: https://www.oxfordjournals.org/nar/database/summary/1992
NARCategory: Genomics Databases (non-vertebrate) Subcategory: General genomics databases
Tags
Annotators
URL
-
-
www.brenda-enzymes.org www.brenda-enzymes.org
-
Text-based queries
NARid: https://www.oxfordjournals.org/nar/database/summary/1301
NARCategory: Genomics Databases (non-vertebrate) Subcategory: Genome annotation terms, ontologies and nomenclature
Tags
Annotators
URL
-
-
ngdc.cncb.ac.cn ngdc.cncb.ac.cniDog1
-
iDog
NARid: https://www.oxfordjournals.org/nar/database/summary/1798
NARCategory: Human and other Vertebrate Genomes Subcategory: Model organisms, comparative genomics
Tags
Annotators
URL
-
- Aug 2022
-
www.tbdb.org www.tbdb.org
-
Gene ressources
NARid: https://www.oxfordjournals.org/nar/database/summary/1203
NARCategory: Genomics Databases (non-vertebrate) Subcategory: Prokaryotic genome databases
Tags
Annotators
URL
-
-
www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
-
Consensus CDS
NARid: https://www.oxfordjournals.org/nar/database/summary/35 https://www.oxfordjournals.org/nar/database/summary/911
NARCategory: Human and other Vertebrate Genomes Subcategory: Model organisms, comparative genomics
-
-
ww25.ecoliwiki.net ww25.ecoliwiki.net
-
Ecoliwiki.net
NARid: https://www.oxfordjournals.org/nar/database/summary/1562
NARCategory: Genomics Databases (non-vertebrate) Subcategory: Prokaryotic genome databases
Tags
Annotators
URL
-
-
cryptodb.org cryptodb.orgCryptoDB1
-
Resources
NARid: https://www.oxfordjournals.org/nar/database/summary/439
NARCategory: Genomics Databases (non-vertebrate) Subcategory: Unicellular eukaryotes genome databases
Tags
Annotators
URL
-
-
-
Shigella is a group of Gram-negative
NARid: https://www.oxfordjournals.org/nar/database/summary/865
NARCategory: Genomics Databases (non-vertebrate) Subcategory: Prokaryotic genome databases
Tags
Annotators
URL
-
-
www.yeastgenome.org www.yeastgenome.org
-
Saccharomyces Genome Database (SGD)
NARid: https://www.oxfordjournals.org/nar/database/summary/357
NARCategory: Genomics Databases (non-vertebrate) Subcategory: Fungal genome databases
Tags
Annotators
URL
-
-
www.patricbrc.org www.patricbrc.orgPATRIC1
-
PATRIC
NARid: https://www.oxfordjournals.org/nar/database/summary/1000
NARCategory: Genomics Databases (non-vertebrate) Subcategory: Prokaryotic genome databases
Tags
Annotators
URL
-
-
compbio.soe.ucsc.edu compbio.soe.ucsc.edu
-
This site contains
NARid: https://www.oxfordjournals.org/nar/database/summary/342
NARCategory: Nucleotide Sequence Databases Subcategory: Gene structure, introns and exons, splice sites
NARCategory: Genomics Databases (non-vertebrate) Subcategory: Fungal genome databases
-
-
viperdb.scripps.edu viperdb.scripps.edu
-
Highlights
NARid: https://www.oxfordjournals.org/nar/database/summary/761
NARCategory: Structure Databases Subcategory: Protein structure
NARCategory: Genomics Databases (non-vertebrate) Subcategory: Viral genome databases
Tags
Annotators
URL
-
-
toxodb.org toxodb.orgToxoDB1
-
VEuPathDB
NARid: https://www.oxfordjournals.org/nar/database/summary/359
NARCategory: Genomics Databases (non-vertebrate) Subcategory: Unicellular eukaryotes genome databases
Tags
Annotators
URL
-
-
www.diatomics.biologie.ens.fr www.diatomics.biologie.ens.fr
-
Diatoms are eukaryotic
NARid: https://www.oxfordjournals.org/nar/database/summary/662
NARCategory: Genomics Databases (non-vertebrate) Subcategory: Unicellular eukaryotes genome databases NARCategory: Plant databases Subcategory: Other plants
Tags
Annotators
URL
-
-
www.glycosciences.de www.glycosciences.de
-
Glycosciences.DB
NARid: https://www.oxfordjournals.org/nar/database/summary/300
NARCategory: Structure Databases
Subcategory: Carbohydrates
Tags
Annotators
URL
-
-
www.glycosciences.de www.glycosciences.de
-
database
NARid: https://www.oxfordjournals.org/nar/database/summary/988
NARCategory: Structure Databases
Subcategory: Carbohydrates
-
-
www.glycosciences.de www.glycosciences.de
-
Glycosciences.de
NARId: https://www.oxfordjournals.org/nar/database/summary/652
NARCategory: Structure Databases Subcategory: Carbohydrates
Tags
Annotators
URL
-
-
www.genome3d.eu www.genome3d.eu
-
genome3d
NARid: https://www.oxfordjournals.org/nar/database/summary/1614
NARCategory: Structure Databases
Subcategory: Protein structure
Tags
Annotators
URL
-
-
bioinformatics.ramapo.edu bioinformatics.ramapo.edu
-
GRSDB2
NARid: https://www.oxfordjournals.org/nar/database/summary/820
NARCategory: RNA sequence databases
NARCategory: Structure Databases
Subcategory: Nucleic acid structure
Tags
Annotators
URL
-
-
caps.ncbs.res.in caps.ncbs.res.inIMOTdb1
-
iMOTdb
NARid: https://www.oxfordjournals.org/nar/database/summary/829
NARCategory: Structure Databases Subcategory: Protein structure NARCategory: Metabolic and Signaling Pathways Subcategory: Protein-protein interactions
Tags
Annotators
URL
-
-
dorina.mdc-berlin.de dorina.mdc-berlin.dedoRiNA1
-
doRiNA
NARid: https://www.oxfordjournals.org/nar/database/summary/1463
NARCategory: RNA sequence databases
Tags
Annotators
URL
-
-
polyasite.unibas.ch polyasite.unibas.ch
-
portal to the curated
NARid: https://www.oxfordjournals.org/nar/database/summary/2004
NARCategory: RNA sequence databases
Tags
Annotators
URL
-
-
mirdb.org mirdb.org
-
miRDB
NARid: https://www.oxfordjournals.org/nar/database/summary/1760 https://www.oxfordjournals.org/nar/database/summary/2070
NARCategory: RNA sequence databases
Tags
Annotators
URL
-
-
brp.kfshrc.edu.sa brp.kfshrc.edu.sa
-
AU-Rich
NARid: https://www.oxfordjournals.org/nar/database/summary/34 NARCategory: Nucleotide Sequence Databases
https://www.oxfordjournals.org/nar/database/summary/232 NARCategory: RNA sequence databases
wd: https://www.wikidata.org/wiki/Q113587472
NAR
Tags
Annotators
URL
-
-
mpd.bioinf.uni-sb.de mpd.bioinf.uni-sb.de
-
Enter
NARid: https://www.oxfordjournals.org/nar/database/summary/1921 https://www.oxfordjournals.org/nar/database/summary/2071
NARCategory: RNA sequence databases
Tags
Annotators
URL
-
-
dashr1.lisanwanglab.org dashr1.lisanwanglab.org
-
DASHR
NARid: https://www.oxfordjournals.org/nar/database/summary/1840
NARCategory: RNA sequence databases
Tags
Annotators
URL
-
-
trna.bioinf.uni-leipzig.de trna.bioinf.uni-leipzig.de
-
Introduction
NARid: https://www.oxfordjournals.org/nar/database/summary/251
NARCategory: RNA sequence databases
-
-
srv00.recas.ba.infn.it srv00.recas.ba.infn.it
-
REDIportal
NARid: https://www.oxfordjournals.org/nar/database/summary/1962
NARCategory: RNA sequence databases
-
-
greengenes.lbl.gov greengenes.lbl.gov
-
Index
NARid: https://www.oxfordjournals.org/nar/database/summary/878
NARCategory: RNA sequence databases
Tags
Annotators
URL
-
-
120.110.158.132:8787 120.110.158.132:8787YM500v31
-
YM500
NARid: https://www.oxfordjournals.org/nar/database/summary/1601
NARCategory: RNA sequence databases
Tags
Annotators
URL
-
-
www.rna-society.org www.rna-society.orgHome1
-
ViRBase
NARid: https://www.oxfordjournals.org/nar/database/summary/1791
NARCategory: RNA sequence databases
Tags
Annotators
URL
-
-
konulab.fen.bilkent.edu.tr konulab.fen.bilkent.edu.tr
-
database
NARid: https://www.oxfordjournals.org/nar/database/summary/1455
NARCategory: RNA sequence databases
-
-
www.biodiversitylibrary.org www.biodiversitylibrary.org
-
mencionado en: A Survey of Color Charts for Biological Descriptions
-
-
52.53.155.43 52.53.155.43
-
SCR_021301
DOI: 10.1101/2022.04.01.22273328
Resource: Wikidata Query Service (RRID:SCR_021301)
Curator: @scibot
SciCrunch record: RRID:SCR_021301
-
SCR_018492
DOI: 10.1101/2022.04.01.22273328
Resource: Wikidata (RRID:SCR_018492)
Curator: @scibot
SciCrunch record: RRID:SCR_018492
-
-
-
Supported types are:
Some types missing from the documentation: * files (see https://wikidata-game.toolforge.org/distributed/#game=10) * url * html * map
-
Example JSONP:
Is there an additional
optionsproperty defining game types?"options":[{"name":"Entry type","key":"type","values":{"dog":"Dog","bridge":"Bridge","tree":"Tree","hieroglyph":"Hieroglyph","musical instrument":"Musical instrument","mountain":"Mountain"}}] -
action=tiles&num=1&lang=en&callback=xyz
there seems to be a "type" parameter specifying the game version requested
-
-
www.mirbase.org www.mirbase.orgmiRBase1
-
miRBase
NARid: https://www.oxfordjournals.org/nar/database/summary/529
NARCategory: RNA sequence databases
Tags
Annotators
URL
-
-
www.iresite.org www.iresite.org
-
IRESite
NARid: https://www.oxfordjournals.org/nar/database/summary/831
NARCategory: RNA sequence databases
Tags
Annotators
URL
-
-
snoopy.med.miyazaki-u.ac.jp snoopy.med.miyazaki-u.ac.jp
-
snOPY
NARid: https://www.oxfordjournals.org/nar/database/summary/1750
NARCategory: RNA sequence databases
-
-
bio-bigdata.hrbmu.edu.cn bio-bigdata.hrbmu.edu.cn
-
LincSNP 3.0
NARid: https://www.oxfordjournals.org/nar/database/summary/1918
NARCategory: RNA sequence databases
Tags
Annotators
URL
-
-
deny.tsinghua.edu.cn deny.tsinghua.edu.cn提示1
-
登录服务
NARid: https://www.oxfordjournals.org/nar/database/summary/984
NARCategory: RNA sequence databases
Tags
Annotators
URL
-
-
111.198.139.65 111.198.139.65POSTAR31
-
POSTAR3
NARid: https://www.oxfordjournals.org/nar/database/summary/1922 https://www.oxfordjournals.org/nar/database/summary/2049
NARCategory: RNA sequence databases
Tags
Annotators
URL
-
-
crdd.osdd.net crdd.osdd.net
-
VIRsiRNAdb
NARid: https://www.oxfordjournals.org/nar/database/summary/1467
NARCategory: RNA sequence databases
Tags
Annotators
URL
-
-
genome.bioch.virginia.edu genome.bioch.virginia.edu
-
tRFs
NARid: https://www.oxfordjournals.org/nar/database/summary/1770
NARCategory: RNA sequence databases
Tags
Annotators
URL
-
-
starbase.sysu.edu.cn starbase.sysu.edu.cn
-
starBase
NARid: https://www.oxfordjournals.org/nar/database/summary/1447
NARCategory: RNA sequence databases
Tags
Annotators
URL
-
-
lncipedia.org lncipedia.org
-
LNCipedia
NARid: https://www.oxfordjournals.org/nar/database/summary/1599 https://www.oxfordjournals.org/nar/database/summary/2040
NARCategory: RNA sequence databases
Tags
Annotators
URL
-
-
diana.e-ce.uth.gr diana.e-ce.uth.gr
-
database
NARid: https://www.oxfordjournals.org/nar/database/summary/1598
NARCategory: RNA sequence databases
Tags
Annotators
URL
-
-
pirnabank.ibab.ac.in pirnabank.ibab.ac.in
-
piRNABank
NARid: https://www.oxfordjournals.org/nar/database/summary/1114
NARCategory: RNA sequence databases
Tags
Annotators
URL
-
-
www.ezlab.org www.ezlab.org
-
Bioinformatics
NARid:https://www.oxfordjournals.org/nar/database/summary/1232
NARCategory: RNA sequence databases
Tags
Annotators
URL
-
-
people.biochem.umass.edu people.biochem.umass.edu
-
3D RIBOSOMAL MODIFICATION MAPS DATABASE
NARid: https://www.oxfordjournals.org/nar/database/summary/1041
NARCategory: RNA sequence databases
-
-
www.wikidata.org www.wikidata.orgroseta1
-
WikidataBiocolores
-
-
www.wikidata.org www.wikidata.orgManchas1
-
WikidataBiocolores
-
-
www.wikidata.org www.wikidata.orgraya1
-
WikidataBiocolores
-
-
www.wikidata.org www.wikidata.org
-
WikidataBiocolores
-
-
combio.pl combio.pl
-
5S rRNA Database
NARid: https://www.oxfordjournals.org/nar/database/summary/230
NARCategory: RNA sequence databases
Tags
Annotators
URL
-
-
rhesus.amu.edu.pl rhesus.amu.edu.pl
-
miRNEST
NARid: https://www.oxfordjournals.org/nar/database/summary/1465
NARCategory: RNA sequence databases
Tags
Annotators
URL
-
-
www.rna-society.org www.rna-society.org
-
RNALocate
NARid: https://www.oxfordjournals.org/nar/database/summary/1925
NARCategory: RNA sequence databases
Tags
Annotators
URL
-
-
mirgator.kobic.re.kr mirgator.kobic.re.kr
-
miRGator
NARid: https://www.oxfordjournals.org/nar/database/summary/1098
NARCategory: RNA sequence databases
Tags
Annotators
URL
-
-
www.smallrnagroup-mainz.de www.smallrnagroup-mainz.de
-
smallrnagroup
NARid: https://www.oxfordjournals.org/nar/database/summary/1841
NARCategory: RNA sequence databases
-
-
c1.accurascience.com c1.accurascience.com
-
miRNA
NARid: https://www.oxfordjournals.org/nar/database/summary/1278
NARCategory: RNA sequence databases
Tags
Annotators
URL
-
-
ngdc.cncb.ac.cn ngdc.cncb.ac.cn
-
LncRNAWiki
NARid: https://www.oxfordjournals.org/nar/database/summary/1768
NARCategory: RNA sequence databases
-
-
tpsic.igcz.poznan.pl tpsic.igcz.poznan.pl
-
tRNA database
NARid: https://www.oxfordjournals.org/nar/database/summary/2084
NARCategory: RNA sequence databases
Tags
Annotators
URL
-
-
compgenomics.utsa.edu compgenomics.utsa.edu
-
(MeT-DB
NARid: https://www.oxfordjournals.org/nar/database/summary/1771
NARCategory: RNA sequence databases
-
-
sysbio.gzzoc.com sysbio.gzzoc.com
-
RPFdb
NARid: https://www.oxfordjournals.org/nar/database/summary/1842
NARCategory: RNA sequence databases
Tags
Annotators
URL
-
-
www.wikidata.org www.wikidata.org
-
It refers to an instance of a clearly identifiable conceptual or material entity. The entity must be notable, in the sense that it can be described using serious and publicly available references.
this is a deal breaker if you are working at the edge of knowl'edge
-
-
bioinformatics.psb.ugent.be bioinformatics.psb.ugent.be
-
the European ribosomal RNA database
NARid: https://www.oxfordjournals.org/nar/database/summary/463
NARCategory: RNA sequence databases
-
-
elifesciences.org elifesciences.org
-
Este es un ejemplo perfecto de la gran sofisticación que se ha logrado en el manejo de información biomédica libre y común.
Este tipo de trabajos se conoce poco y se aplica menos en nuestra región.
El uso de Wikidata disminuye brechas pues no es necesario contar con infraestructura especial
Existe una gran comunidad, conformada por usuarios siempre dispuesta a colaborar
-
Wikidata is a community-maintained knowledge base that has been assembled from repositories
Wikidata es una base de conocimientos mantenida por la comunidad que se ha ensamblado a partir de repositorios
-
and that adheres to the FAIR principles of findability, accessibility, interoperability and reusability.
Wikidata se adhiere a los principios FAIR de encontrabilidad, accesibilidad, interoperabilidad y reutilización
-
-
www.wikidata.org www.wikidata.org
-
WikidataBiocolores
-
-
www.wikidata.org www.wikidata.org
-
WikidataBiocolores
-
-
www.wikidata.org www.wikidata.org
-
WikidataBiocolores
-
-
www.wikidata.org www.wikidata.org
-
WikidataBiocolores
-
-
iimcb.genesilico.pl iimcb.genesilico.pl
-
RNA Bricks
NARid: https://www.oxfordjournals.org/nar/database/summary/1688
NARCategory: Structure Databases Subcategory: Nucleic acid structure
Tags
Annotators
URL
-
-
3did.irbbarcelona.org 3did.irbbarcelona.org3did1
-
database of three-dimensional interacting domain
NARid: https://www.oxfordjournals.org/nar/database/summary/633
NARCategory: Structure Databases Subcategory: Protein structure
Tags
Annotators
URL
-
-
www.ebi.ac.uk www.ebi.ac.uk
-
integration
NARid: https://www.oxfordjournals.org/nar/database/summary/1615
NARCategory: Structure Databases
Subcategory: Protein structure
Tags
Annotators
URL
-
-
cdb.ics.uci.edu cdb.ics.uci.edu
-
Molecules
NARid: https://www.oxfordjournals.org/nar/database/summary/1023
NARCategory: Structure Databases Subcategory: Small molecules
Tags
Annotators
URL
-
-
spock.genes.nig.ac.jp spock.genes.nig.ac.jp
-
Genomes
NARid: https://www.oxfordjournals.org/nar/database/summary/322
NARCategory: Structure Databases Subcategory: Protein structure
-
-
stackoverflow.com stackoverflow.com
-
bioinformatics.charite.de bioinformatics.charite.demVOC 3.01
-
mVOC 3.0 Database
NARid: https://www.oxfordjournals.org/nar/database/summary/1687
NARCategory: Structure Databases Subcategory: Small molecules
Tags
Annotators
URL
-
-
metacrop.ipk-gatersleben.de metacrop.ipk-gatersleben.de
-
narid:https://www.oxfordjournals.org/nar/database/summary/1095
narCategory:Category: Metabolic and Signaling Pathways
Subcategory: Metabolic pathways
Category: Plant databases
Subcategory: General plant databases
Tags
Annotators
URL
-
-
phosphat.uni-hohenheim.de phosphat.uni-hohenheim.de
-
narid:https://www.oxfordjournals.org/nar/database/summary/1112
narCategory:Category: Metabolic and Signaling Pathways
Subcategory: Signalling pathways
Category: Plant databases
Subcategory: Arabidopsis thaliana
Tags
Annotators
URL
-
-
funcoup5.scilifelab.se funcoup5.scilifelab.se
-
narid:https://www.oxfordjournals.org/nar/database/summary/91
https://www.oxfordjournals.org/nar/database/summary/1521
narCategory:Category: Metabolic and Signaling Pathways
Subcategory: Protein-protein interactions
Tags
Annotators
URL
-
- Jul 2022
-
119.3.41.228 119.3.41.228AtPID1
-
narid:https://www.oxfordjournals.org/nar/database/summary/1046
narCategory:Metabolic and Signaling Pathways
Subcategory: Protein-protein interactions
Category: Plant databases
Subcategory: Arabidopsis thaliana
Tags
Annotators
URL
-
-
genome.ucsc.edu genome.ucsc.edu
-
narid:https://www.oxfordjournals.org/nar/database/summary/985
narCategory: Human and other Vertebrate Genomes
Subcategory: Human genome databases, maps and viewers
Category: Human and other Vertebrate Genomes
Subcategory: Human ORFs
Tags
Annotators
URL
-
-
cebs.niehs.nih.gov cebs.niehs.nih.gov
-
narid:https://www.oxfordjournals.org/nar/database/summary/1055
narCategory:Microarray Data and other Gene Expression Databases
Category: Other Molecular Biology Databases
Subcategory: Drugs and drug design
Tags
Annotators
URL
-
-
www.dsimb.inserm.fr www.dsimb.inserm.fr
-
narid:https://www.oxfordjournals.org/nar/database/summary/1320
narCategory: Microarray Data and other Gene Expression Databases
Category: Organelle databases
Subcategory: Mitochondrial genes and proteins
Tags
Annotators
URL
-
-
docdrop.org docdrop.org
-
connections to wikidata
exists for mindgraph
-
-
genetics.opentargets.org genetics.opentargets.org
-
platform.opentargets.org platform.opentargets.org
-
narid:https://www.oxfordjournals.org/nar/database/summary/1976
https://www.oxfordjournals.org/nar/database/summary/1991
narCategory:Other Molecular Biology Databases
Subcategory: Drugs and drug design
Category: Proteomics Resources
Tags
Annotators
URL
-
-
www.unicarbkb.org www.unicarbkb.org
-
NARid: https://www.oxfordjournals.org/nar/database/summary/292
NARCategory: Structure Databases
Subcategory: Carbohydrates
Tags
Annotators
URL
-
-
consurfdb.tau.ac.il consurfdb.tau.ac.il
-
NARid: https://www.oxfordjournals.org/nar/database/summary/1269
NARCategory: Structure Databases
Subcategory: Protein structure
Tags
Annotators
URL
-
-
www.cathdb.info www.cathdb.info
-
NARid: https://www.oxfordjournals.org/nar/database/summary/258
NARCategory: Structure Databases
Subcategory: Protein structure
Tags
Annotators
URL
-
-
pdbflex.org pdbflex.org
-
NARid: https://www.oxfordjournals.org/nar/database/summary/1851
NARCategory: Structure Databases
Subcategory: Protein structure
Tags
Annotators
URL
-
-
prodata.swmed.edu prodata.swmed.edu
-
NARid: https://www.oxfordjournals.org/nar/database/summary/1936
NARCategory: Structure Databases
Subcategory: Protein structure
Tags
Annotators
URL
-
-
ahdb.ee.ncku.edu.tw ahdb.ee.ncku.edu.tw
-
NARid: https://www.oxfordjournals.org/nar/database/summary/1488
NARCategory: Structure Databases
Subcategory: Protein structure
Tags
Annotators
URL
-
-
www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
-
NARid: https://www.oxfordjournals.org/nar/database/summary/270
NARCategory: Structure Databases
Subcategory: Protein structure
-
-
pocket.med.wayne.edu pocket.med.wayne.edu
-
NARid: https://www.oxfordjournals.org/nar/database/summary/1353
NARCategory: Structure Databases
Subcategory: Protein structure
-
-
as-alps.nagahama-i-bio.ac.jp as-alps.nagahama-i-bio.ac.jp
-
NARid: https://www.oxfordjournals.org/nar/database/summary/1284
NARCategory: Structure Databases
Subcategory: Protein structure
-
-
pcidb.russelllab.org pcidb.russelllab.org
-
NARid: https://www.oxfordjournals.org/nar/database/summary/1500
NARCategory: Structure Databases
Subcategory: Protein structure
Tags
Annotators
URL
-
-
www.ebi.ac.uk www.ebi.ac.uk
-
NARid: https://www.oxfordjournals.org/nar/database/summary/1615
NARCategory: Structure Databases
Subcategory: Protein structure
-
-
linkprot.cent.uw.edu.pl linkprot.cent.uw.edu.pl
-
NARid: https://www.oxfordjournals.org/nar/database/summary/1932
NARCategory: Structure Databases
Subcategory: Protein structure
Tags
Annotators
URL
-
-
idp1.force.cs.is.nagoya-u.ac.jp idp1.force.cs.is.nagoya-u.ac.jp
-
NARid: https://www.oxfordjournals.org/nar/database/summary/1501
NARCategory: Structure Databases
Subcategory: Protein structure
-
-
supfam.org supfam.org
-
NARid: https://www.oxfordjournals.org/nar/database/summary/285
NARCategory: Structure Databases
Subcategory: Protein structure
Tags
Annotators
URL
-
-
spock.genes.nig.ac.jp spock.genes.nig.ac.jp
-
NARid: https://www.oxfordjournals.org/nar/database/summary/322
NARCategory: Structure Databases
Subcategory: Protein structure
-
-
tstmp.enzim.ttk.mta.hu tstmp.enzim.ttk.mta.hu
-
narid:https://www.oxfordjournals.org/nar/database/summary/1937
narCategory:Structure Databases
Subcategory:Protein structure
Tags
Annotators
URL
-
-
caps.ncbs.res.in caps.ncbs.res.in
-
NARid: https://www.oxfordjournals.org/nar/database/summary/1756
NARCategory: Structure Databases
Subcategory: Protein structure
Tags
Annotators
URL
-
-
bitterdb.agri.huji.ac.il bitterdb.agri.huji.ac.ilBitterDB1
-
NARid: https://www.oxfordjournals.org/nar/database/summary/1482
NARCategory: Structure Databases
Subcategory: Small molecules
-
-
www.crystallography.net www.crystallography.net
-
NARid: https://www.oxfordjournals.org/nar/database/summary/1483
NARCategory: Structure Databases
Subcategory: Small molecules
Tags
Annotators
URL
-
-
glytoucan.org glytoucan.org
-
NARid: https://www.oxfordjournals.org/nar/database/summary/1905
NARCategory: Structure Databases
Subcategory: Carbohydrates
Tags
Annotators
URL
-
-
www.glycanstructure.org www.glycanstructure.org
-
NARid: https://www.oxfordjournals.org/nar/database/summary/1611
NARCategory: Structure Databases
Subcategory: Carbohydrates
-
-
psi-structuralgenomics.org psi-structuralgenomics.org
-
NARid: https://www.oxfordjournals.org/nar/database/summary/1260
NARCategory: Structure Databases
Subcategory: Protein structure
-
- Jun 2022
-
www.plprot.ethz.ch www.plprot.ethz.ch
-
narid:https://www.oxfordjournals.org/nar/database/summary/722
narCategory: Organelle databases
Category: Plant databases
Subcategory: Arabidopsis thaliana
Tags
Annotators
URL
-
-
www.glycome-db.org www.glycome-db.org
-
NARid: https://www.oxfordjournals.org/nar/database/summary/1905
NARCategory: Structure Databases Subcategory: Carbohydrates
Tags
Annotators
URL
-
-
www.emdataresource.org www.emdataresource.org
-
NARid: https://www.oxfordjournals.org/nar/database/summary/1311
NARCategory: Structure Databases
Subcategory: Protein structure
Tags
Annotators
URL
-
-
agris-knowledgebase.org agris-knowledgebase.org
-
narid:https://www.oxfordjournals.org/nar/database/summary/618
narCategory:Nucleotide Sequence Databases
Subcategory: Transcriptional regulator sites and transcription factors
Category: Plant databases
Subcategory: Arabidopsis thaliana
Tags
Annotators
URL
-
-
utk-mods-to-rdf.readthedocs.io utk-mods-to-rdf.readthedocs.io
-
International Standard Book Numbers are present as identifier values in the Children’s Defense Fund collection. UT currently has a specific Solr field for publication identifiers (ISBNs and ISSNs) so that these identifiers can be displayed and searched for separately: utk_mods_publication_identifier_ms.
Note: The wikidata equivalents (P957 and p212) split ISBN into 2 separate fields based on whether it is a 10 or 13.
-
-
jowisz.ifpan.edu.pl jowisz.ifpan.edu.pl
-
BSDB
NARid: https://www.oxfordjournals.org/nar/database/summary/1300
NARCategory: Structure Databases
Subcategory: Protein structure
Tags
Annotators
URL
-
-
coiledcoils.chm.bris.ac.uk coiledcoils.chm.bris.ac.uk
-
CC+
NARid: https://www.oxfordjournals.org/nar/database/summary/1215
NARCategory: Structure Databases
Subcategory: Protein structure
-
-
pdbtm.enzim.hu pdbtm.enzim.hu
-
PDBTM
NARid: https://www.oxfordjournals.org/nar/database/summary/619
NARCategory: Structure Databases
Subcategory: Protein structure
Tags
Annotators
URL
-
-
www.minas.uzh.ch www.minas.uzh.ch
-
MINAS
NARid: https://www.oxfordjournals.org/nar/database/summary/1485
NARCategory: Structure Databases
Subcategory: Nucleic acid structure
Tags
Annotators
URL
-
-
swissmodel.expasy.org swissmodel.expasy.org
-
SWISS-MODEL Repository
NARid: https://www.oxfordjournals.org/nar/database/summary/585
NARCategory: Structure Databases Subcategory: Protein structure
Tags
Annotators
URL
-
-
weram.biocuckoo.org weram.biocuckoo.org
-
narid:https://www.oxfordjournals.org/nar/database/summary/1935
narCategory: Protein sequence databases
Subcategory: Databases of individual protein families
Tags
Annotators
URL
-
-
www.genome.jp www.genome.jp
-
narid:https://www.oxfordjournals.org/nar/database/summary/221
narCategory:Protein sequence databases
Subcategory: Protein properties
Category: Proteomics Resources
Tags
Annotators
URL
-
-
-
narid:https://www.oxfordjournals.org/nar/database/summary/452 (Nota: la URL de narid es incorrecta)
narCategory:Protein sequence databases
Subcategory: Protein sequence motifs and active sites
Category: Structure Databases
Subcategory: Protein structure
Tags
Annotators
URL
-
-
ciliate.org ciliate.org
-
narid:https://www.oxfordjournals.org/nar/database/summary/873
narCategory:Genomics Databases (non-vertebrate)
Subcategory:Unicellular eukaryotes genome databases
Tags
Annotators
URL
-
-
search.thegencc.org search.thegencc.org
-
narid:https://www.oxfordjournals.org/nar/database/summary/2116
narCategory:Genomics Databases (non-vertebrate)
Subcategory: Model organisms, comparative genomics
Tags
Annotators
URL
-
-
alk.ibms.sinica.edu.tw alk.ibms.sinica.edu.twHome1
-
narid:https://www.oxfordjournals.org/nar/database/summary/1149
narCategory:RNA sequence databases, Structure Databases
Subcategory:RNA sequence databases, Nucleic acid structure
Tags
Annotators
URL
-
-
hfv.lanl.gov hfv.lanl.gov
-
narid:https://www.oxfordjournals.org/nar/database/summary/1503
narCategory:Genomics Databases (non-vertebrate)
Subcategory:Viral genome databases
Tags
Annotators
URL
-
-
meta.wikimedia.org meta.wikimedia.org
-
inference to increase the coverage of Wikidata data considerably
so wikidate can create knowledge by 'thinking' inferring in software.
-
-
caps.ncbs.res.in caps.ncbs.res.inPASS 2.71
-
PASS2
NARid: https://www.oxfordjournals.org/nar/database/summary/275
NARCategory: Structure Databases
Subcategory: Protein structure
Tags
Annotators
URL
-
-
sbi.imim.es sbi.imim.esArchDB1
-
ArchDB
NARid: https://www.oxfordjournals.org/nar/database/summary/413
NARCategory: Structure Databases
Subcategory: Protein structure
Tags
Annotators
URL
-
-
compbio.buffalo.edu compbio.buffalo.edu
-
Decoys 'R' Us
NARid: https://www.oxfordjournals.org/nar/database/summary/385
NARCategory: Structure Databases
Subcategory: Protein structure
Tags
Annotators
URL
-
-
www.genome.jp www.genome.jp
-
KEGG GLYCAN
NARid: https://www.oxfordjournals.org/nar/database/summary/486
NARCategory: Structure Databases
Subcategory: Carbohydrates
Tags
Annotators
URL
-
-
possum.cbrc.jp possum.cbrc.jpPoSSuM1
-
PoSSuM
NARid: https://www.oxfordjournals.org/nar/database/summary/1499
NARCategory: Structure Databases
Subcategory: Protein structure
Tags
Annotators
URL
-
-
jenalib.leibniz-fli.de jenalib.leibniz-fli.de
-
Jena Library of Biological Macromolecules
NARid: https://www.oxfordjournals.org/nar/database/summary/267
NARCategory: Structure Databases
Subcategory: Protein structure
Tags
Annotators
URL
-
-
ndbserver.rutgers.edu ndbserver.rutgers.edu
-
NDB
NARid: https://www.oxfordjournals.org/nar/database/summary/272
NARCategory: Structure Databases
Subcategory: Nucleic acid structure
Tags
Annotators
URL
-
-
scop.berkeley.edu scop.berkeley.edu
-
SCOPe
NARid: https://www.oxfordjournals.org/nar/database/summary/255
NARCategory: Structure Databases
Subcategory: Protein structure
Tags
Annotators
URL
-
-
molmovdb.mbb.yale.edu molmovdb.mbb.yale.edu
-
Database
NARid: https://www.oxfordjournals.org/nar/database/summary/262
NARCategory: Structure Databases
Subcategory: Protein structure
Tags
Annotators
URL
-
-
www.imgt.org www.imgt.org
-
IMGT®
NARid: https://www.oxfordjournals.org/nar/database/summary/502
NARCategory: Structure Databases
Subcategory: Protein structure
Tags
Annotators
URL
-
-
211.25.251.163 211.25.251.163InterRNA1
-
InterRNA
NARid: https://www.oxfordjournals.org/nar/database/summary/1844
NARCategory: Structure Databases
Subcategory: Nucleic acid structure
Tags
Annotators
URL
-
-
pubchem.ncbi.nlm.nih.gov pubchem.ncbi.nlm.nih.gov
-
chemical information
NARid: vhttps://www.oxfordjournals.org/nar/database/summary/735
NARCategory: Structure Databases
Subcategory: Small molecules
Tags
Annotators
URL
-
-
modbase.compbio.ucsf.edu modbase.compbio.ucsf.edu
-
ModBase
NARid: https://www.oxfordjournals.org/nar/database/summary/331
NARCategory: Structure Databases
Subcategory: Protein structure
Tags
Annotators
URL
-
-
crdd.osdd.net crdd.osdd.net
-
Hemolytik
NARid: https://www.oxfordjournals.org/nar/database/summary/1686
NARCategory: Structure Databases
Subcategory: Small molecules
Tags
Annotators
URL
-
- May 2022
-
www.ccdc.cam.ac.uk www.ccdc.cam.ac.uk
-
Cambridge Structural Database
NARid: https://www.oxfordjournals.org/nar/database/summary/261
NARCategory: Structure Databases
Subcategory: Small molecules
-
-
elifesciences.org elifesciences.org
-
RRID:SCR_018492
DOI: 10.7554/eLife.70780
Resource: Wikidata (RRID:SCR_018492)
Curator: @scibot
SciCrunch record: RRID:SCR_018492
Tags
Annotators
URL
-
-
www.bio2byte.be www.bio2byte.be
-
Start2Fold
NARid: https://www.oxfordjournals.org/nar/database/summary/1852
NARCategory: Structure Databases
Subcategory: Protein structure
Tags
Annotators
URL
-
-
pcddb.cryst.bbk.ac.uk pcddb.cryst.bbk.ac.uk
-
PCDDB
NARid: https://www.oxfordjournals.org/nar/database/summary/1430
NARCategory: Structure Databases
Subcategory: Protein structure
Tags
Annotators
URL
-
-
mmb.irbbarcelona.org mmb.irbbarcelona.org
-
BIGNASim
NARid: https://www.oxfordjournals.org/nar/database/summary/1845
NARCategory: Structure Databases
Subcategory: Nucleic acid structure
Tags
Annotators
URL
-
-
upjv.q4md-forcefieldtools.org upjv.q4md-forcefieldtools.org
-
R.E.DD.B
NARId: https://www.oxfordjournals.org/nar/database/summary/1127
NARCategory: Structure Databases
Subcategory: Small molecules
-
-
repeatsdb.org repeatsdb.org
-
RepeatsDB
NARid: https://www.oxfordjournals.org/nar/database/summary/1691
NARCategory: Structure Databases
Subcategory: Protein structure
Tags
Annotators
URL
-
-
www.bioinsilico.org www.bioinsilico.org
-
CAPS - Database
NARid: https://www.oxfordjournals.org/nar/database/summary/1489
NARCategory: Structure Databases
Subcategory: Protein structure
-
-
scop.mrc-lmb.cam.ac.uk scop.mrc-lmb.cam.ac.uk
-
SCOP
NARid: https://www.oxfordjournals.org/nar/database/summary/282
NARCategory: Structure Databases
Subcategory: Protein structure
Tags
Annotators
URL
-
-
rna.urmc.rochester.edu rna.urmc.rochester.edu
-
Nearest Neighbor
NARid: https://www.oxfordjournals.org/nar/database/summary/1349
NARCategory: Structure Databases
Subcategory: Nucleic acid structure
Tags
Annotators
URL
-
-
www.cgl.ucsf.edu www.cgl.ucsf.edu
-
Download
NARid: https://www.oxfordjournals.org/nar/database/summary/583
NARCategory: Structure Databases
Subcategory: Protein structure
Tags
Annotators
URL
-
-
pdbj.org pdbj.org
-
PDBj
NARid: https://www.oxfordjournals.org/nar/database/summary/1487
NARCategory: Structure Databases
Subcategory: Protein structure
Tags
Annotators
URL
-
-
cluster.physics.iisc.ernet.in cluster.physics.iisc.ernet.in
-
Experiment Metho
NARid: https://www.oxfordjournals.org/nar/database/summary/384
NARCategory: Structure Databases
Subcategory: Protein structure
-
-
pisite.sb.ecei.tohoku.ac.jp pisite.sb.ecei.tohoku.ac.jpPiSITE1
-
PiSITE
NARid: https://www.oxfordjournals.org/nar/database/summary/1208
NARCategory: Structure Databases
Subcategory: Protein structure
-
-
www.ebi.ac.uk www.ebi.ac.uk
-
PDBsum
NARid: https://www.oxfordjournals.org/nar/database/summary/278
NARCategory: Structure Databases
Subcategory: Protein structure
-
-
csdb.glycoscience.ru csdb.glycoscience.ru
-
Version 2.
NARid: https://www.oxfordjournals.org/nar/database/summary/1904
NARCategory: Structure Databases Subcategory: Carbohydrates
Tags
Annotators
URL
-
-
www.bobdc.com www.bobdc.com
-
sparql PREFIX osmt: <https://wiki.openstreetmap.org/wiki/Key:> SELECT * WHERE { ?museum osmt:addr:city "New York"; osmt:tourism "museum"; osmt:wikidata ?wikidataID . }
Tags
Annotators
URL
-
-
bioinfo3d.cs.tau.ac.il bioinfo3d.cs.tau.ac.ilRsiteDB1
-
database
NARid: https://www.oxfordjournals.org/nar/database/summary/1252
NARCategory: Structure Databases Subcategory: Protein structure
-
-
caps.ncbs.res.in caps.ncbs.res.in
-
SSToSS
NARid: https://www.oxfordjournals.org/nar/database/summary/530
NARCategory: Structure Databases Subcategory: Protein structure
Tags
Annotators
URL
-
-
opm.phar.umich.edu opm.phar.umich.eduOPM1
-
Orientations of Proteins in Membranes (OPM) database
NARid: https://www.oxfordjournals.org/nar/database/summary/1478
NARCategory: Structure Databases Subcategory: Protein structure
Tags
Annotators
URL
-
-
webchem.ncbr.muni.cz webchem.ncbr.muni.cz
-
ValidatorDB
NARid: https://www.oxfordjournals.org/nar/database/summary/1779
NARCategory: Structure Databases Subcategory: Protein structure
-
-
crdd.osdd.net crdd.osdd.net
-
ccPDB
NARid: https://www.oxfordjournals.org/nar/database/summary/1490
NARCategory: Structure Databases Subcategory: Protein structure
Tags
Annotators
URL
-
-
-
Topsan
NARid: https://www.oxfordjournals.org/nar/database/summary/1335
NARCategory: Structure Databases Subcategory: Protein structure
Tags
Annotators
URL
-
-
ptgl.uni-frankfurt.de ptgl.uni-frankfurt.de
-
PTGLweb
NARid: https://www.oxfordjournals.org/nar/database/summary/1352
NARCategory: Structure Databases Subcategory: Protein structure
Tags
Annotators
URL
-
-
mizuguchilab.org mizuguchilab.orgHOMSTRAD1
-
1032 families / 3454 structures
NARid: https://www.oxfordjournals.org/nar/database/summary/498
NARCategory: Structure Databases Subcategory: Protein structure
Tags
Annotators
URL
-
-
-
D2P2
NARid: https://www.oxfordjournals.org/nar/database/summary/1613
NARCategory: Structure Databases Subcategory: Protein structure
Tags
Annotators
URL
-
-
waltzdb.switchlab.org waltzdb.switchlab.org
-
WALTZ-DB
NARid: https://www.oxfordjournals.org/nar/database/summary/2007
NARCategory: Structure Databases Subcategory: Protein structure
Tags
Annotators
URL
-
-
proteinensemble.org proteinensemble.orgPED1
-
Protein Ensemble Database
NARid: https://www.oxfordjournals.org/nar/database/summary/1690
NARCategory: Structure Databases Subcategory: Protein structure
Tags
Annotators
URL
-
-
gnmdb.csb.pitt.edu gnmdb.csb.pitt.edu
-
GNM DB
NARid: https://www.oxfordjournals.org/nar/database/summary/1850
NARCategory: Structure Databases Subcategory: Protein structure
Tags
Annotators
URL
-
-
-
Scholia is a python package and webapp for interaction with scholarly information in Wikidata.
-
-
mappings.dbpedia.org mappings.dbpedia.org
Tags
Annotators
URL
-
-
hymenoptera.elsiklab.missouri.edu hymenoptera.elsiklab.missouri.edu
-
Hymenoptera
NARid: https://www.oxfordjournals.org/nar/database/summary/1414
NARCategory: Genomics Databases (non-vertebrate) Subcategory: Invertebrate genome databases
-
-
so.qbic.riken.jp so.qbic.riken.jp
-
Project
NARid: https://www.oxfordjournals.org/nar/database/summary/1624
NARCategory: Genomics Databases (non-vertebrate) Subcategory: Invertebrate genome databases
-
-
i5k.nal.usda.gov i5k.nal.usda.gov
-
i5k Workspace@NAL
NARid: https://www.oxfordjournals.org/nar/database/summary/1794
NARCategory: Genomics Databases (non-vertebrate) Subcategory: Invertebrate genome databases
Tags
Annotators
URL
-
-
www.elegansvariation.org www.elegansvariation.org
-
CeNDR
NARid: https://www.oxfordjournals.org/nar/database/summary/1956
NARCategory: Genomics Databases (non-vertebrate) Subcategory: Invertebrate genome databases
Tags
Annotators
URL
-
-
worfdb.dfci.harvard.edu worfdb.dfci.harvard.edu
-
Worm ORF
NARid: https://www.oxfordjournals.org/nar/database/summary/304
NARCategory: Genomics Databases (non-vertebrate) Subcategory: Invertebrate genome databases
Tags
Annotators
URL
-
-
v2.insect-genome.com v2.insect-genome.com
-
InsectBase 2.0,
NARid: https://www.oxfordjournals.org/nar/database/summary/1874
NARCategory: Genomics Databases (non-vertebrate) Subcategory: Invertebrate genome databases
Tags
Annotators
URL
-
-
wfleabase.org wfleabase.org
-
wFleaBase
NARid: https://www.oxfordjournals.org/nar/database/summary/925
NARCategory: Genomics Databases (non-vertebrate) Subcategory: Invertebrate genome databases
Tags
Annotators
URL
-
-
bioinformatics.biol.uoa.gr bioinformatics.biol.uoa.gr
-
cuticleDB
NARid: https://www.oxfordjournals.org/nar/database/summary/653
NARCategory: Genomics Databases (non-vertebrate) Subcategory: Invertebrate genome databases
-
-
www.flymine.org www.flymine.org
-
FlyMine
NARid: https://www.oxfordjournals.org/nar/database/summary/670
NARCategory: Genomics Databases (non-vertebrate) Subcategory: Invertebrate genome databases
Tags
Annotators
URL
-
-
vectorbase.org vectorbase.org
-
VeuPathDB
NARid: https://www.oxfordjournals.org/nar/database/summary/1031
NARCategory: Genomics Databases (non-vertebrate) Subcategory: Invertebrate genome databases
Tags
Annotators
URL
-
-
opencitations.net opencitations.net
-
|Prefix|Supplier|Identifier type|Example| |--- |--- |--- |--- | |010|Wikidata|Wikidata Identifier (QID)|oci:01027931310-01022252312| |020|Crossref|Digital Object Identifier (DOI)|oci:02001010806360107050663080702026306630509-02001010806360107050663080702026305630301| |030|OpenCitations Corpus|OpenCitations Corpus Internal Identifier|oci:0301-03018| |040|Dryad|Digital Object Identifier (DOI)|oci:040050006013613273410133708070900-04003070302361019113701000000040801| |050|CROCI|Digital Object Identifier (DOI)|oci:05001000106361937321411281422370200010237000837000001-050010008073602000009020002|
Tags
Annotators
URL
-
-
www.cdfd.org.in www.cdfd.org.in
-
SilkSatDb
NARid: https://www.oxfordjournals.org/nar/database/summary/744
NARCategory: Genomics Databases (non-vertebrate) Subcategory: Invertebrate genome databases
Tags
Annotators
URL
-
-
tritrypdb.org tritrypdb.org
-
Search for...
NARid: https://www.oxfordjournals.org/nar/database/summary/1360
NARCategory: Genomics Databases (non-vertebrate) Subcategory: Invertebrate genome databases
Tags
Annotators
URL
-
-
pristionchus.org pristionchus.org
-
pristionchus.org
NARid: https://www.oxfordjournals.org/nar/database/summary/1006
NARCategory: Genomics Databases (non-vertebrate) Subcategory: Invertebrate genome databases
Tags
Annotators
URL
-
-
xyala2.bio.ed.ac.uk xyala2.bio.ed.ac.uk
-
earthworms.org
NARid: https://www.oxfordjournals.org/nar/database/summary/698
NARCategory: Genomics Databases (non-vertebrate) Subcategory: Invertebrate genome databases
Tags
Annotators
URL
-
-
planmine.mpibpc.mpg.de planmine.mpibpc.mpg.de
-
PlanMine
NARid: https://www.oxfordjournals.org/nar/database/summary/1872
NARCategory: Genomics Databases (non-vertebrate) Subcategory: Invertebrate genome databases
-
-
talk.ictvonline.org talk.ictvonline.org
-
ICTV
NARid: https://www.oxfordjournals.org/nar/database/summary/106
NARCategory: Genomics Databases (non-vertebrate) Subcategory: Invertebrate genome databases
Tags
Annotators
URL
-
-
www.helminth.net www.helminth.net
-
About Helminth.net:
NARid: https://www.oxfordjournals.org/nar/database/summary/543
NARCategory: Genomics Databases (non-vertebrate) Subcategory: Invertebrate genome databases
Tags
Annotators
URL
-