A survey of 230 diverse bacterial and archaeal genomes found evidence of DNA methylation in 93% of genomes, with a diverse array of methylated motifs (834 distinct motifs; average of three motifs per organism)

Using long-read sequencing to detect imprinted DNA methylation

Comparison of whole-genome bisulfite sequencing library preparation strategies identifies sources of biases affecting DNA methylation data

repeat expansion at IIL1 leads to increased accumulation of 24-nt siRNAs in a temperature-dependent manner that correlates with the iil phenotype. We show that DCL3 and other components of the RNA-dependent DNA methylation (RdDM) pathway are essential for this siRNA-directed epigenetic gene silencing

Dynamics and function of DNA methylation in plants

Recurrent acquisition of cytosine methyltransferases into eukaryotic retrotransposons

Genome-scale DNA methylome and transcriptome profiling of human neutrophils

Cell-type deconvolution in epigenome-wide association studies: a review and recommendations

Dnmt3a is an epigenetic mediator of adipose insulin resistance

A resource for the allele-specific analysis of DNA methylation at multiple genomically imprinted loci in mice

Statistical and integrative system-level analysis of DNA methylation data

RCP: a novel probe design bias correction method for Illumina Methylation BeadChip

global dye-bias equalization step to control for the different average intensities in the red and green channels. This procedure scales the background-corrected intensities, dividing by the average intensity of the positive control probes in the same channel, red or green, and multiplying by the average intensity of all positive controls in a reference array.