162 Matching Annotations
  1. May 2022
  2. www.biorxiv.org www.biorxiv.org
    Diauxic lags explain unexpected coexistence in multi-resource environments
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    1. EMBOpress 27 May 2022

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    biorxiv.org/content/10.1101/2021.08.09.455603v2
  3. www.biorxiv.org www.biorxiv.org
    Differential impact of TNFRSF co-stimulation on CD8+ T cell cytokine production by feedback control of surface receptor expression
    1
    1. EMBOpress 07 May 2022

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    biorxiv.org/content/10.1101/2021.07.02.450833v1
  4. www.biorxiv.org www.biorxiv.org
    Single Cell Variability of CRISPR-Cas Interference and Adaptation
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    1. EMBOpress 04 May 2022

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    biorxiv.org/content/10.1101/2021.07.21.453200v1
  5. Apr 2022
  6. www.biorxiv.org www.biorxiv.org
    Unique features of transcription termination and initiation at closely spaced tandem human genes
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    1. EMBOpress 23 Apr 2022

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    biorxiv.org/content/10.1101/2021.09.10.459726v1
  7. www.biorxiv.org www.biorxiv.org
    Physical and functional interactome atlas of human receptor tyrosine kinases
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    1. EMBOpress 22 Apr 2022

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    biorxiv.org/content/10.1101/2021.09.17.460748v1
  8. www.biorxiv.org www.biorxiv.org
    Conserved exchange of paralog proteins during neuronal differentiation
    1
    1. EMBOpress 08 Apr 2022

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      PeerReviewed EMBOPress Life Science Alliance systems biology
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    biorxiv.org/content/10.1101/2021.07.22.453347v1
  9. Mar 2022
  10. www.biorxiv.org www.biorxiv.org
    GROWTH-RATE DEPENDENT AND NUTRIENT-SPECIFIC GENE EXPRESSION RESOURCE ALLOCATION IN FISSION YEAST
    1
    1. EMBOpress 22 Mar 2022

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    biorxiv.org/content/10.1101/2021.03.16.435638v1
  11. www.biorxiv.org www.biorxiv.org
    Ultra-high sensitivity mass spectrometry quantifies single-cell proteome changes upon perturbation
    1
    1. EMBOpress 22 Mar 2022

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    biorxiv.org/content/10.1101/2020.12.22.423933v2
  12. www.biorxiv.org www.biorxiv.org
    A human kinase yeast array for the identification of kinases modulating phosphorylation-dependent protein-protein interactions
    1
    1. EMBOpress 22 Mar 2022

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    biorxiv.org/content/10.1101/2021.11.18.469002v1
  13. www.biorxiv.org www.biorxiv.org
    https://biorxiv.org/cgi/content/10.1101/2021.09.01.458647
    1
    1. EMBOpress 09 Mar 2022

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    biorxiv.org/content/10.1101/2021.09.01.458647v1
  14. Feb 2022
  15. www.biorxiv.org www.biorxiv.org
    Structured decomposition improves systems serology prediction and interpretation
    1
    1. EMBOpress 19 Feb 2022

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    biorxiv.org/content/10.1101/2021.01.03.425138v2
  16. www.biorxiv.org www.biorxiv.org
    Major functional bias for mitochondrial complexes in genome-wide CRISPR screens
    1
    1. EMBOpress 19 Feb 2022

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    biorxiv.org/content/10.1101/2020.08.31.273730v1
  17. Jan 2022
  18. www.biorxiv.org www.biorxiv.org
    Trade-offs in adaptation to glycolysis and gluconeogenesis result in a preferential flux direction in central metabolism
    1
    1. EMBOpress 21 Jan 2022

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    biorxiv.org/content/10.1101/2021.05.07.443112v3
  19. Dec 2021
  20. www.biorxiv.org www.biorxiv.org
    Modeling population size independent tissue epigenomes by ChIL-seq with single-thin sections
    1
    1. EMBOpress 16 Dec 2021

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    biorxiv.org/content/10.1101/2020.12.18.423434v1
  21. www.biorxiv.org www.biorxiv.org
    A Genome-Scale TF-DNA Interaction Network of Transcriptional Regulation of Arabidopsis Primary and Specialized Metabolism
    1
    1. EMBOpress 16 Dec 2021

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    biorxiv.org/content/10.1101/2021.05.13.443927v1
  22. www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
    https://biorxiv.org/cgi/content/10.1101/2021.01.27.428543
    1
    1. EMBOpress 01 Dec 2021

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    ncbi.nlm.nih.gov/pmc/articles/PMC7852273/
  23. Nov 2021
  24. www.biorxiv.org www.biorxiv.org
    Cell-to-cell and type-to-type heterogeneity of signaling networks: Insights from the crowd
    1
    1. EMBOpress 30 Nov 2021

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    biorxiv.org/content/10.1101/2021.03.23.436603v2
  25. Oct 2021
  26. www.biorxiv.org www.biorxiv.org
    Exploring amino acid functions in a deep mutational landscape
    1
    1. EMBOpress 30 Oct 2021

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    biorxiv.org/lookup/doi/10.1101/2020.05.26.116756
  27. Sep 2021
  28. www.biorxiv.org www.biorxiv.org
    Evaluating the Simple Arrhenius Equation for the Temperature Dependence of Complex Developmental Processes
    1
    1. EMBOpress 30 Sep 2021

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    biorxiv.org/content/10.1101/2020.07.17.208777v1
  29. Aug 2021
  30. www.biorxiv.org www.biorxiv.org
    Single-cell transcriptomics reveals immune response of intestinal cell types to viral infection
    1
    1. EMBOpress 13 Aug 2021

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    biorxiv.org/content/10.1101/2020.08.19.255893v1
  31. www.biorxiv.org www.biorxiv.org
    Identification of Covalent Modifications Regulating Immune Signaling Complex Composition and Phenotype
    1
    1. EMBOpress 13 Aug 2021

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    biorxiv.org/content/10.1101/2020.11.16.384750v1
  32. www.biorxiv.org www.biorxiv.org
    Tunable phenotypic variability through an autoregulatory alternative sigma factor circuit
    1
    1. EMBOpress 13 Aug 2021

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    biorxiv.org/content/10.1101/2020.06.18.158790v1
  33. www.biorxiv.org www.biorxiv.org
    TNF stimulation primarily modulates transcriptional burst size of NF-κB-regulated genes
    1
    1. EMBOpress 13 Aug 2021

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    biorxiv.org/content/10.1101/2020.11.16.384297v1
  34. Jul 2021
  35. www.biorxiv.org www.biorxiv.org
    Precise transcriptional control of cellular quiescence by BRAVO/WOX5 complex in Arabidopsis roots
    1
    1. EMBOpress 28 Jul 2021

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      PeerReviewed EMBOPress Molecular Systems Biology plant biology
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    biorxiv.org/lookup/doi/10.1101/2020.07.15.203638
  36. www.biorxiv.org www.biorxiv.org
    HMGB1 as a rheostat of chromatin topology and RNA homeostasis on the path to senescence
    1
    1. EMBOpress 28 Jul 2021

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    biorxiv.org/lookup/doi/10.1101/540146
  37. www.biorxiv.org www.biorxiv.org
    A genome-scale yeast library with inducible expression of individual genes
    1
    1. EMBOpress 20 Jul 2021

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      PeerReviewed EMBOPress Molecular Systems Biology synthetic biology
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    biorxiv.org/content/10.1101/2020.12.30.424776v2
  38. www.biorxiv.org www.biorxiv.org
    Diverse natural variants suppress mutations in hundreds of essential genes
    1
    1. EMBOpress 17 Jul 2021

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    biorxiv.org/content/10.1101/2020.11.24.395855v2
  39. www.biorxiv.org www.biorxiv.org
    Behavioral fingerprints predict insecticide and anthelmintic mode of action
    1
    1. EMBOpress 17 Jul 2021

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    biorxiv.org/content/10.1101/2021.01.27.428391v1
  40. www.biorxiv.org www.biorxiv.org
    JSTA: joint cell segmentation and cell type annotation for spatial transcriptomics
    1
    1. EMBOpress 17 Jul 2021

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    biorxiv.org/content/10.1101/2020.09.18.304147v1
  41. www.biorxiv.org www.biorxiv.org
    Quantifying signal persistence in the T cell signaling network using an optically controllable antigen receptor
    1
    1. EMBOpress 14 Jul 2021

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    biorxiv.org/content/10.1101/2020.10.30.362194v1
  42. www.biorxiv.org www.biorxiv.org
    A dynamic and spatially periodic micro-pattern of HES5 expression underlies the probability of neuronal differentiation in the mouse spinal cord
    1
    1. EMBOpress 01 Jul 2021

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    biorxiv.org/content/10.1101/2020.08.03.234369v2
  43. Jun 2021
  44. www.biorxiv.org www.biorxiv.org
    Sequence analysis allows functional annotation of tyrosine recombinases in prokaryotic genomes
    1
    1. EMBOpress 08 Jun 2021

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    biorxiv.org/content/10.1101/542381v1
  45. May 2021
  46. www.biorxiv.org www.biorxiv.org
    Spurious regulatory connections dictate the expression-fitness landscape of translation factors
    1
    1. EMBOpress 19 May 2021

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    biorxiv.org/content/10.1101/2020.11.27.400200v1
  47. www.biorxiv.org www.biorxiv.org
    hu.MAP 2.0: Integration of over 15,000 proteomic experiments builds a global compendium of human multiprotein assemblies
    1
    1. EMBOpress 19 May 2021

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    biorxiv.org/content/10.1101/2020.09.15.298216v1
  48. www.biorxiv.org www.biorxiv.org
    http://biorxiv.org/cgi/content/short/2020.10.21.348854
    1
    1. EMBOpress 19 May 2021

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    biorxiv.org/content/10.1101/2020.10.21.348854v1
  49. www.biorxiv.org www.biorxiv.org
    Multidimensional Chromatin Regulation of Cell Lineage Differentiation in a Metazoan Embryo
    1
    1. EMBOpress 06 May 2021

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    biorxiv.org/content/10.1101/2020.05.18.101584v1
  50. www.biorxiv.org www.biorxiv.org
    CODEX, a neural network approach to explore signaling dynamics landscapes
    1
    1. EMBOpress 05 May 2021

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      PeerReviewed EMBOPress Molecular Systems Biology cell biology
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    biorxiv.org/lookup/doi/10.1101/2020.08.05.237842
  51. www.biorxiv.org www.biorxiv.org
    Proteome constraints reveal targets for improving microbial fitness in nutrient-rich environments
    1
    1. EMBOpress 04 May 2021

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    biorxiv.org/content/10.1101/2020.10.15.340554v1
  52. Apr 2021
  53. www.biorxiv.org www.biorxiv.org
    CASB: A concanavalin A-based sample barcoding strategy for single-cell sequencing
    1
    1. EMBOpress 24 Apr 2021

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    biorxiv.org/content/10.1101/2020.10.15.340844v1
  54. www.biorxiv.org www.biorxiv.org
    Urinary proteome profiling for stratifying patients with familial Parkinsons disease
    1
    1. EMBOpress 07 Apr 2021

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    biorxiv.org/content/10.1101/2020.08.09.243584v1
  55. www.biorxiv.org www.biorxiv.org
    Integrated intra- and intercellular signaling knowledge for multicelullar omics analysis
    1
    1. EMBOpress 05 Apr 2021

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    biorxiv.org/content/10.1101/2020.08.03.221242v2
  56. www.biorxiv.org www.biorxiv.org
    Identifying Modules of Cooperating Cancer Drivers
    1
    1. EMBOpress 05 Apr 2021

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    biorxiv.org/content/10.1101/2020.06.29.168229v1
  57. www.biorxiv.org www.biorxiv.org
    The genotype-phenotype landscape of an allosteric protein
    1
    1. EMBOpress 05 Apr 2021

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    biorxiv.org/content/10.1101/2020.07.10.197574v1
  58. www.biorxiv.org www.biorxiv.org
    The genotype-phenotype landscape of an allosteric protein
    1
    1. EMBOpress 05 Apr 2021

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    biorxiv.org/content/10.1101/2020.09.30.320812v1
  59. www.biorxiv.org www.biorxiv.org
    Multi-modal meta-analysis of cancer cell line omics profiles identifies ECHDC1 as a novel breast tumor suppressor
    1
    1. EMBOpress 02 Apr 2021

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    biorxiv.org/content/10.1101/2020.01.31.929372v1
  60. www.biorxiv.org www.biorxiv.org
    The circadian oscillator analysed at the single-transcript level
    1
    1. EMBOpress 02 Apr 2021

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    biorxiv.org/content/10.1101/2020.08.26.268201v1
  61. www.biorxiv.org www.biorxiv.org
    From Chemoproteomic-Detected Amino Acids to Genomic Coordinates: Insights into Precise Multi-omic Data Integration
    1
    1. EMBOpress 02 Apr 2021

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    biorxiv.org/content/10.1101/2020.07.03.186007v2
  62. www.biorxiv.org www.biorxiv.org
    Promoters adopt distinct dynamic manifestations depending on transcription factor context
    1
    1. EMBOpress 02 Apr 2021

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    biorxiv.org/content/10.1101/650762v2
  63. www.biorxiv.org www.biorxiv.org
    TATA and paused promoters active in differentiated tissues have distinct expression characteristics
    1
    1. EMBOpress 02 Apr 2021

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    biorxiv.org/content/10.1101/2020.07.15.196493v1
  64. Feb 2021
  65. www.biorxiv.org www.biorxiv.org
    Using single-plant -omics in the field to link maize genes to functions and phenotypes
    1
    1. EMBOpress 25 Feb 2021

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    biorxiv.org/content/10.1101/2020.04.06.027300v1
  66. www.biorxiv.org www.biorxiv.org
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    Aggregation and Disaggregation Features of the Human Proteome
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  79. Oct 2020
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    Mapping of the nucleolar proteome reveals spatiotemporal organization related to intrinsic protein disorder
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    The protein architecture of the endocytic coat analyzed by FRET
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  88. Jul 2020
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    STAT3-dependent systems-level analysis reveals PDK4 as an independent predictor of biochemical recurrence in prostate cancer
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  104. Jun 2020
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  112. May 2020
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    Flocking in complex environments—Attention trade-offs in collective information processing
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      Rahmani P, Peruani F, Romanczuk P (2020) Flocking in complex environments—Attention trade-offs in collective information processing. PLoS Comput Biol 16(4): e1007697. https://doi.org/10.1371/journal.pcbi.1007697

      is:preprint lang:en behavioral science collective behavior response interaction cognitive science social systems biology attention processing
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  114. Jan 2020
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    Book Review: Design Principles of Biological Circuits - LessWrong 2.0
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      A final word: when we do not understand something, it does not look like there is anything to be understood at all - it just looks like random noise. Just because it looks like noise does not mean there is no hidden structure.

      Excellent statement! Could this be the guiding principle of the current big data boom in biology?

      noise systems biology big data
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  116. Nov 2019
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  123. Sep 2019
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    biorxiv.org/content/10.1101/328880v1
  125. www.biorxiv.org www.biorxiv.org
    An integrative machine learning approach for prediction of toxicity-related drug safety
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    1. EMBOpress 22 Sep 2019

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    biorxiv.org/content/10.1101/455667v1
  126. www.biorxiv.org www.biorxiv.org
    Co-existing feedback loops generate tissue-specific circadian rhythms
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    1. EMBOpress 22 Sep 2019

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    biorxiv.org/content/10.1101/304451v1
  127. www.biorxiv.org www.biorxiv.org
    Multi-region proteome analysis quantifies spatial heterogeneity of prostate tissue biomarkers
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    1. EMBOpress 22 Sep 2019

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    biorxiv.org/content/10.1101/250167v1
  128. www.biorxiv.org www.biorxiv.org
    Mapping In Vivo O-Glycoproteome Using Site-specific Extraction of O-linked glycopeptides (EXoO)
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    1. EMBOpress 22 Sep 2019

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      PeerReviewed EMBOPress Molecular Systems Biology systems biology
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    biorxiv.org/content/10.1101/368282v1
  129. www.biorxiv.org www.biorxiv.org
    Disentangling bacterial invasiveness from lethality in an experimental host-pathogen system
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    1. EMBOpress 22 Sep 2019

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    biorxiv.org/content/10.1101/361584v1
  130. www.biorxiv.org www.biorxiv.org
    Absolute quantification of translational regulation and burden using combined sequencing approaches
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    1. EMBOpress 22 Sep 2019

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    biorxiv.org/content/10.1101/338939v2
  131. www.biorxiv.org www.biorxiv.org
    Mechanistic causes of constrained phenotypic variation revealed by synthetic gene regulatory networks
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    1. EMBOpress 22 Sep 2019

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    biorxiv.org/content/10.1101/184325v2
  132. www.biorxiv.org www.biorxiv.org
    The fitness cost and benefit of phase separated protein deposits
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    1. EMBOpress 22 Sep 2019

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    biorxiv.org/content/10.1101/574657v2
  133. www.biorxiv.org www.biorxiv.org
    Defining the RNA Interactome by Total RNA-Associated Protein Purification
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    1. EMBOpress 22 Sep 2019

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    biorxiv.org/content/10.1101/436253v1