137 Matching Annotations
  1. Last 7 days
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    A genome-scale yeast library with inducible expression of individual genes
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    1. EMBOpress 20 Jul 2021

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    biorxiv.org/content/10.1101/2020.12.30.424776v2
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    Diverse natural variants suppress mutations in hundreds of essential genes
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    1. EMBOpress 17 Jul 2021

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    biorxiv.org/content/10.1101/2020.11.24.395855v2
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    Behavioral fingerprints predict insecticide and anthelmintic mode of action
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    1. EMBOpress 17 Jul 2021

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    biorxiv.org/content/10.1101/2021.01.27.428391v1
  5. www.biorxiv.org www.biorxiv.org
    JSTA: joint cell segmentation and cell type annotation for spatial transcriptomics
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    1. EMBOpress 17 Jul 2021

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    biorxiv.org/content/10.1101/2020.09.18.304147v1
  6. Jul 2021
  7. www.biorxiv.org www.biorxiv.org
    Quantifying signal persistence in the T cell signaling network using an optically controllable antigen receptor
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    1. EMBOpress 14 Jul 2021

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    biorxiv.org/content/10.1101/2020.10.30.362194v1
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    A dynamic and spatially periodic micro-pattern of HES5 expression underlies the probability of neuronal differentiation in the mouse spinal cord
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    1. EMBOpress 01 Jul 2021

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    biorxiv.org/content/10.1101/2020.08.03.234369v2
  9. Jun 2021
  10. www.biorxiv.org www.biorxiv.org
    Sequence analysis allows functional annotation of tyrosine recombinases in prokaryotic genomes
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    1. EMBOpress 08 Jun 2021

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    biorxiv.org/content/10.1101/542381v1
  11. May 2021
  12. www.biorxiv.org www.biorxiv.org
    Spurious regulatory connections dictate the expression-fitness landscape of translation factors
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    1. EMBOpress 19 May 2021

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    biorxiv.org/content/10.1101/2020.11.27.400200v1
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    hu.MAP 2.0: Integration of over 15,000 proteomic experiments builds a global compendium of human multiprotein assemblies
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    1. EMBOpress 19 May 2021

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    biorxiv.org/content/10.1101/2020.09.15.298216v1
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    http://biorxiv.org/cgi/content/short/2020.10.21.348854
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    1. EMBOpress 19 May 2021

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    biorxiv.org/content/10.1101/2020.10.21.348854v1
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    Multidimensional Chromatin Regulation of Cell Lineage Differentiation in a Metazoan Embryo
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    1. EMBOpress 06 May 2021

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    biorxiv.org/content/10.1101/2020.05.18.101584v1
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    CODEX, a neural network approach to explore signaling dynamics landscapes
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    1. EMBOpress 05 May 2021

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    biorxiv.org/lookup/doi/10.1101/2020.08.05.237842
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    Proteome constraints reveal targets for improving microbial fitness in nutrient-rich environments
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    1. EMBOpress 04 May 2021

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    biorxiv.org/content/10.1101/2020.10.15.340554v1
  18. Apr 2021
  19. www.biorxiv.org www.biorxiv.org
    CASB: A concanavalin A-based sample barcoding strategy for single-cell sequencing
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    1. EMBOpress 24 Apr 2021

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    biorxiv.org/content/10.1101/2020.10.15.340844v1
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    Urinary proteome profiling for stratifying patients with familial Parkinsons disease
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    1. EMBOpress 07 Apr 2021

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    biorxiv.org/content/10.1101/2020.08.09.243584v1
  21. www.biorxiv.org www.biorxiv.org
    Integrated intra- and intercellular signaling knowledge for multicelullar omics analysis
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    1. EMBOpress 05 Apr 2021

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    biorxiv.org/content/10.1101/2020.08.03.221242v2
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    Identifying Modules of Cooperating Cancer Drivers
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    1. EMBOpress 05 Apr 2021

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    biorxiv.org/content/10.1101/2020.06.29.168229v1
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    The genotype-phenotype landscape of an allosteric protein
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    1. EMBOpress 05 Apr 2021

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    biorxiv.org/content/10.1101/2020.07.10.197574v1
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    The genotype-phenotype landscape of an allosteric protein
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    1. EMBOpress 05 Apr 2021

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    biorxiv.org/content/10.1101/2020.09.30.320812v1
  25. www.biorxiv.org www.biorxiv.org
    Multi-modal meta-analysis of cancer cell line omics profiles identifies ECHDC1 as a novel breast tumor suppressor
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    1. EMBOpress 02 Apr 2021

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    biorxiv.org/content/10.1101/2020.01.31.929372v1
  26. www.biorxiv.org www.biorxiv.org
    The circadian oscillator analysed at the single-transcript level
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    1. EMBOpress 02 Apr 2021

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    biorxiv.org/content/10.1101/2020.08.26.268201v1
  27. www.biorxiv.org www.biorxiv.org
    From Chemoproteomic-Detected Amino Acids to Genomic Coordinates: Insights into Precise Multi-omic Data Integration
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    1. EMBOpress 02 Apr 2021

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    biorxiv.org/content/10.1101/2020.07.03.186007v2
  28. www.biorxiv.org www.biorxiv.org
    Promoters adopt distinct dynamic manifestations depending on transcription factor context
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    1. EMBOpress 02 Apr 2021

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    biorxiv.org/content/10.1101/650762v2
  29. www.biorxiv.org www.biorxiv.org
    TATA and paused promoters active in differentiated tissues have distinct expression characteristics
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    1. EMBOpress 02 Apr 2021

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    biorxiv.org/content/10.1101/2020.07.15.196493v1
  30. Feb 2021
  31. www.biorxiv.org www.biorxiv.org
    Using single-plant -omics in the field to link maize genes to functions and phenotypes
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    1. EMBOpress 25 Feb 2021

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    biorxiv.org/content/10.1101/2020.04.06.027300v1
  32. www.biorxiv.org www.biorxiv.org
    A quantitative analysis of the interplay of environment, neighborhood and cell state in 3D spheroids
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    1. EMBOpress 25 Feb 2021

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    biorxiv.org/content/10.1101/2020.07.24.219659v1
  33. www.biorxiv.org www.biorxiv.org
    DOMINO: a novel network-based module detection algorithm with reduced rate offalse calls
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    1. EMBOpress 25 Feb 2021

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    biorxiv.org/content/10.1101/2020.03.10.984963v4
  34. www.biorxiv.org www.biorxiv.org
    Causal integration of multi-omics data with prior knowledge to generate mechanistic hypotheses
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    1. EMBOpress 25 Feb 2021

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    biorxiv.org/content/10.1101/2020.04.23.057893v1
  35. www.biorxiv.org www.biorxiv.org
    Harmonization and Annotation of Single-cell Transcriptomics data with Deep Generative Models
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    1. EMBOpress 25 Feb 2021

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    biorxiv.org/content/10.1101/532895v2
  36. www.biorxiv.org www.biorxiv.org
    Phosphoproteomics identifies microglial Siglec-F inflammatory response during neurodegeneration
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    1. EMBOpress 25 Feb 2021

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    biorxiv.org/content/10.1101/2020.05.12.090688v1
  37. www.biorxiv.org www.biorxiv.org
    CIGAR-seq, a CRISPR/Cas-based method for unbiased screening of novel mRNA modification regulators
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    1. EMBOpress 25 Feb 2021

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    biorxiv.org/content/10.1101/2020.10.03.324715v1
  38. www.biorxiv.org www.biorxiv.org
    Dormancy as a spectrum measuring spore’s proximity to death and to replicative life
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    1. EMBOpress 25 Feb 2021

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    biorxiv.org/content/10.1101/747766v2
  39. www.biorxiv.org www.biorxiv.org
    The transcriptome dynamics of single cells during the cell cycle
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    1. EMBOpress 25 Feb 2021

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    biorxiv.org/content/10.1101/2019.12.23.887570v1
  40. www.biorxiv.org www.biorxiv.org
    Predictive features of gene expression variation reveal a mechanistic link between expression variation and differential expression
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    1. EMBOpress 25 Feb 2021

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    biorxiv.org/content/10.1101/2020.02.10.942276v1
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    Oncogenic mutant RAS activity is rescaled by the ERK/MAPK pathway
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    1. EMBOpress 25 Feb 2021

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    biorxiv.org/content/10.1101/2020.02.17.952093v1
  42. www.biorxiv.org www.biorxiv.org
    CEN-tools: An integrative platform to identify the contexts of essential genes
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    1. EMBOpress 25 Feb 2021

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    biorxiv.org/content/10.1101/2020.05.10.087668v2
  43. www.biorxiv.org www.biorxiv.org
    Genome-wide off-rates reveal how DNA binding dynamics shape transcription factor function
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    1. EMBOpress 25 Feb 2021

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    biorxiv.org/content/10.1101/2020.05.03.074815v1
  44. www.biorxiv.org www.biorxiv.org
    Aggregation and Disaggregation Features of the Human Proteome
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    1. EMBOpress 25 Feb 2021

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    biorxiv.org/content/10.1101/2020.02.05.931675v1
  45. Oct 2020
  46. www.biorxiv.org www.biorxiv.org
    Programmable and portable CRISPR-Cas transcriptional activation in bacteria
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    1. EMBOpress 06 Oct 2020

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    biorxiv.org/content/10.1101/2020.01.03.882431v2
  47. www.biorxiv.org www.biorxiv.org
    State transitions of a developmental oscillator
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    1. EMBOpress 06 Oct 2020

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    biorxiv.org/content/10.1101/755421v2
  48. www.biorxiv.org www.biorxiv.org
    Predicting antigen-specificity of single T-cells based on TCR CDR3 regions
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    1. EMBOpress 06 Oct 2020

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    biorxiv.org/content/10.1101/734053v1
  49. www.biorxiv.org www.biorxiv.org
    Mapping of the nucleolar proteome reveals spatiotemporal organization related to intrinsic protein disorder
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    1. EMBOpress 06 Oct 2020

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    biorxiv.org/content/10.1101/2020.01.30.923003v3
  50. doi.org doi.org
    https://doi.org/10.1101/2020.03.31.016048
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    doi.org/10.1101/2020.03.31.016048
  51. www.biorxiv.org www.biorxiv.org
    The protein architecture of the endocytic coat analyzed by FRET
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    1. EMBOpress 06 Oct 2020

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    biorxiv.org/content/10.1101/480996v1
  52. www.biorxiv.org www.biorxiv.org
    Multiplexing cell-cell communication
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    1. EMBOpress 06 Oct 2020

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    biorxiv.org/content/10.1101/584664v1
  53. www.biorxiv.org www.biorxiv.org
    Hormonal dysregulation after prolonged HPA axis activation can be explained by changes of adrenal and corticotroph masses
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    biorxiv.org/content/10.1101/2020.01.01.892596v2
  54. Jul 2020
  55. www.biorxiv.org www.biorxiv.org
    Drug mechanism-of-action discovery through the integration of pharmacological and CRISPR screens
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    1. EMBOpress 15 Jul 2020

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    biorxiv.org/content/10.1101/2020.01.14.905729v1
  56. www.biorxiv.org www.biorxiv.org
    Using deep mutational scanning data to benchmark computational phenotype predictors and identify pathogenic missense mutations
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    1. EMBOpress 15 Jul 2020

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    biorxiv.org/content/10.1101/855957v2
  57. www.biorxiv.org www.biorxiv.org
    Reduced proteasome activity in the aging brain results in ribosome stoichiometry loss and aggregation
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    1. EMBOpress 15 Jul 2020

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    biorxiv.org/content/10.1101/577478v3
  58. www.biorxiv.org www.biorxiv.org
    Exploring endocytic compartment morphology with systematic genetics and single cell image analysis
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    1. EMBOpress 15 Jul 2020

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    biorxiv.org/content/10.1101/724989v1
  59. www.biorxiv.org www.biorxiv.org
    STAT3-dependent systems-level analysis reveals PDK4 as an independent predictor of biochemical recurrence in prostate cancer
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    1. EMBOpress 15 Jul 2020

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    biorxiv.org/content/10.1101/770701v1
  60. www.biorxiv.org www.biorxiv.org
    Controlling spatiotemporal pattern formation in a concentration gradient with a synthetic toggle switch
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  70. Jun 2020
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  78. May 2020
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    Flocking in complex environments—Attention trade-offs in collective information processing
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      Rahmani P, Peruani F, Romanczuk P (2020) Flocking in complex environments—Attention trade-offs in collective information processing. PLoS Comput Biol 16(4): e1007697. https://doi.org/10.1371/journal.pcbi.1007697

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  80. Jan 2020
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      A final word: when we do not understand something, it does not look like there is anything to be understood at all - it just looks like random noise. Just because it looks like noise does not mean there is no hidden structure.

      Excellent statement! Could this be the guiding principle of the current big data boom in biology?

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  82. Nov 2019
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  89. Sep 2019
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    Non-canonical circadian oscillations in Drosophila S2 cells drive gene-expression cycles coupled to metabolic oscillations
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    Ratiometric Distribution Of OCT4 During Stem Cell Division Controls The Balance Between Self-Renewal And Differentiation
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    biorxiv.org/content/10.1101/129163v1
  118. www.biorxiv.org www.biorxiv.org
    MODELING SIGNALING-DEPENDENT PLURIPOTENT CELL STATES WITH BOOLEAN LOGIC CAN PREDICT CELL FATE TRANSITIONS
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    biorxiv.org/content/10.1101/115683v2
  119. www.biorxiv.org www.biorxiv.org
    Genome-wide phenotypic analysis of growth, cell morphogenesis and cellcycle events in Escherichia coli.
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    biorxiv.org/content/10.1101/101832v3
  120. www.biorxiv.org www.biorxiv.org
    A synthesis of over 9,000 mass spectrometry experiments reveals the core set of human protein complexes
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    1. EMBOpress 22 Sep 2019

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    biorxiv.org/content/10.1101/092361v1
  121. www.biorxiv.org www.biorxiv.org
    A two-state photoconversion model predicts the spectral response dynamics of optogenetic systems
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    1. EMBOpress 22 Sep 2019

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    biorxiv.org/content/10.1101/081430v1
  122. www.biorxiv.org www.biorxiv.org
    Unraveling mitotic protein networks by 3D multiplexed epitope drug screening
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    1. EMBOpress 22 Sep 2019

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    biorxiv.org/content/10.1101/231779v2
  123. www.biorxiv.org www.biorxiv.org
    Mapping DNA damage-dependent genetic interactions in yeast via orgy mating and barcode fusion genetics