10,000 Matching Annotations
  1. Nov 2025
    1. eLife Assessment

      The authors aim to understand why Kupffer cells (KCs) die in metabolic-associated steatotic liver disease (MASLD). This is a useful study using in vitro studies and an in vivo genetic mouse model, suggesting that increased glycolysis contributes to KC death in MASLD. However, the data presented are incomplete as some inconsistencies in the results presented are identified in the characterisation of KCs. This work will be of interest to researchers in the immunology and metabolism fields.

    2. Reviewer #1 (Public review):

      Summary:

      The authors aim to investigate the mechanisms underlying Kupffer cell death in metabolic-associated steatotic liver disease (MASLD). The authors propose that KCs undergo massive cell death in MASLD and that glycolysis drives this process. However, there appears to be a discrepancy between the reported high rates of KC death and the apparent maintenance of KC homeostasis and replacement capacity.

      Strengths:

      This is an in vivo study.

      Weaknesses:

      There are discrepancies between the authors' observations and previous reports, as well as inconsistencies among their own findings.

      Before presenting the percentage of CLEC4F⁺TUNEL⁺ cells, the authors should have first shown the number of CLEC4F⁺ cells per unit area in Figure 1. At 16 weeks of age, the proportion of TUNEL⁺ KCs is extremely high (~60%), yet the flow cytometry data indicate that nearly all F4/80⁺ KCs are TIMD4⁺, suggesting an embryonic origin. If such extensive KC death occurred, the proportion of embryonically derived TIMD4⁺ KCs would be expected to decrease substantially. Surprisingly, the proportion of TIMD4⁺ KCs is comparable between chow-fed and 16-week HFHC-fed animals. Thus, the immunostaining and flow cytometry data are inconsistent, making it difficult to explain how massive KC death does not lead to their replacement by monocyte-derived cells.

      These data suggest that despite the reported high rate of cell death among CLEC4F⁺TIMD4⁺ KCs, the population appears to self-maintain, with no evidence of monocyte-derived KC generation in this model, which contradicts several recent studies in the field.

      Moreover, there is no evidence that TIMD4⁺CLEC4F⁺ KCs increase their proliferation rate to compensate for such extensive cell death. If approximately 60% of KCs are dying and no monocyte-derived KCs are recruited, one would expect a much greater decrease in total KC numbers than what is reported.

      It is also unexpected that the maximal rate of KC death occurs at early time points (8 weeks), when the mice have not yet gained substantial weight (Figure 1B). Previous studies have shown that longer feeding periods are typically required to observe the loss of embryo-derived KCs.

      Furthermore, it is surprising that the HFD induces as much KC death as the HFHC and MCD diets. Earlier studies suggested that HFD alone is far less effective than MASH-inducing diets at promoting the replacement of embryonic KCs by monocyte-derived macrophages.

      In Figure 2D, TIMD4 staining appears extremely faint, making the results difficult to interpret. In contrast, the TUNEL signal is strikingly intense and encompasses a large proportion of liver cells (approximately 60% of KCs, 15% of hepatocytes, 20% of hepatic stellate cells, 30% of non-KC macrophages, and a proportion of endothelial cells is also likely affected). This pattern closely resembles that typically observed in mouse models of acute liver failure. Given this apparent extent of cell death, it is unexpected that ALT and AST levels remain low in MASH mice, which is highly unusual.

      No statistical analysis is provided for Figure 5D, and it is unclear which metabolites show statistically significant changes in Figure 5C.

      In addition, there is no evaluation of liver pathology in Clec4f-Cre × Chil1flox/flox mice. It remains possible that the observed effects on KC death result from aggravated liver injury in these animals. There is also no evidence that Chil1 deficiency affects glucose metabolism in KCs in vivo.

      Finally, the authors should include a more direct experimental approach to modulate glycolysis in KCs and assess its causal role in KC death in MASH.

    3. Reviewer #2 (Public review):

      Summary:

      In this manuscript, He et al. set out to investigate the mechanisms behind Kupffer Cell death in MASLD. As has been previously shown, they demonstrate a loss of resident KCs in MASLD in different mouse models. They then go on to show that this correlates with alterations in genes/metabolites associated with glucose metabolism in KCs. To investigate the role of glucose metabolism further, they subject isolated KCs in vitro to different metabolic treatments and assess cleaved caspase 3 staining, demonstrating that KCs show increased Cl. Casp 3 staining upon stimulation of glycolysis. Finally, they use a genetic mouse model (Chil1KO) where they have previously reported that loss of this gene leads to increased glycolysis and validate this finding in BMDMs (KO). They then remove this gene specifically from KCs (Clec4fCre) and show that this leads to increased macrophage death compared with controls.

      Strengths:

      As we do not yet understand why KCs die in MASLD, this manuscript provides some explanation for this finding. The metabolomics is novel and provides insight into KC biology. It could also lead to further investigation; here, it will be important that the full dataset is made available.

      Weaknesses:

      Different diets are known to induce different amounts of KC loss, yet here, all models examined appear to result in 60% KC death. One small field of view of liver tissue is shown as representative to make these claims, but this is not sufficient, as anything can be claimed based on one field of view. Rather, a full tissue slice should be included to allow readers to really assess the level of death. Additionally, there is no consistency between the markers used to define KCs and moMFs, with CLEC4F being used in microscopy, TIM4 in flow, while the authors themselves acknowledge that moKCs are CLEC4F+TIM4-. As moKCs are induced in MASLD, this limits interpretation. Additionally, Iba1 is referred to as a moMF marker but is also expressed by KCs, which again prevents an accurate interpretation of the data. Indeed, the authors show 60% of KCs are dying but only 30% of IBA1+ moMFs, as KCs are also IBA1+, this would mean that KCs die much more than moMFs, which would then limit the relevance of the BMDM studies performed if the phenotype is KC specific. Therefore, this needs to be clarified. The claim that periportal KCs die preferentially is not supported, given that the majority of KCs are peri-portal. Rather, these results would need to be normalised to KC numbers in PP vs PC regions to make meaningful conclusions. Additionally, KCs are known to be notoriously difficult to keep alive in vitro, and for these studies, the authors only examine cl. Casp 3 staining. To fully understand that data, a full analysis of the viability of the cells and whether they retain the KC phenotype in all conditions is required. Finally, in the Cre-driven KO model, there does not seem to be any death of KCs in the controls (rather numbers trend towards an increase with time on diet, Figure 6E), contrary to what had been claimed in the rest of the paper, again making it difficult to interpret the overall results. Additionally, there is no validation that the increased death observed in vivo in KCs is due to further promotion of glycolysis.

    4. Reviewer #3 (Public review):

      This manuscript provides novel insights into altered glucose metabolism and KC status during early MASLD. The authors propose that hyperactivated glycolysis drives a spatially patterned KC depletion that is more pronounced than the loss of hepatocytes or hepatic stellate cells. This concept significantly enhances our understanding of early MASLD progression and KC metabolic phenotype.

      Through a combination of TUNEL staining and MS-based metabolomic analyses of KCs from HFHC-fed mice, the authors show increased KC apoptosis alongside dysregulation of glycolysis and the pentose phosphate pathway. Using in vitro culture systems and KC-specific ablation of Chil1, a regulator of glycolytic flux, they further show that elevated glycolysis can promote KC apoptosis.

      However, it remains unclear whether the observed metabolic dysregulation directly causes KC death or whether secondary factors, such as low-grade inflammation or macrophage activation, also contribute significantly. Nonetheless, the results, particularly those derived from the Chil1-ablated model, point to a new potential target for the early prevention of KC death during MASLD progression.

      The manuscript is clearly written and thoughtfully addresses key limitations in the field, especially the focus on glycolytic intermediates rather than fatty acid oxidation. The authors acknowledge the missing mechanistic link between increased glycolysis and KC death. Still, several interpretations require moderation to avoid overstatement, and certain experimental details, particularly those concerning flow cytometry and population gating, need further clarification.

      Strengths:

      (1) The study presents the novel observation of profound metabolic dysregulation in KCs during early MASLD and identifies these cells as undergoing apoptosis. The finding that Chil1 ablation aggravates this phenotype opens new avenues for exploring therapeutic strategies to mitigate or reverse MASLD progression.

      (2) The authors provide a comprehensive metabolic profile of KCs following HFHC diet exposure, including quantification of individual metabolites. They further delineate alterations in glycolysis and the pentose phosphate pathway in Chil1-deficient cells, substantiating enhanced glycolytic flux through 13C-glucose tracing experiments.

      (3) The data underscore the critical importance of maintaining balanced glucose metabolism in both in vitro and in vivo contexts to prevent KC apoptosis, emphasizing the high metabolic specialization of these cells.

      (4) The observed increase in KC death in Chil1-deficient KCs demonstrates their dependence on tightly regulated glycolysis, particularly under pathological conditions such as early MASLD.

      Weaknesses:

      (1) The novelty is questionable. The presented work has considerable overlap with a study by the same lab, which is currently under review (citation 17), and it should be considered whether the data should not be presented in one paper.

      (2) The authors report that 60% of KCs are TUNEL-positive after 16 weeks of HFHC diet and confirm this by cleaved caspase-3 staining. Given that such marker positivity typically indicates imminent cell death within hours, it is unexpected that more extensive KC depletion or monocyte infiltration is not observed. Since Timd4 expression on monocyte-derived macrophages takes roughly one month to establish, the authors should consider whether these TUNEL-positive KCs persist in a pre-apoptotic state longer than anticipated. Alternatively, fate-mapping experiments could clarify the dynamics of KC death and replacement.

      (3) The mechanistic link between elevated glycolytic flux and KC death remains unclear.

      (4) The study does not address the polarization or ontogeny of KCs during early MASLD. Given that pro-inflammatory macrophages preferentially utilize glycolysis, such data could provide valuable insight into the reason for increased KC death beyond the presented hyperreliance on glycolysis.

      (5) The gating strategy for monocyte-derived macrophages (moMFs) appears suboptimal and may include monocytes. A more rigorous characterization of myeloid populations by including additional markers would strengthen the study's conclusions.

      (6) While BMDMs from Chil1 knockout mice are used to demonstrate enhanced glycolytic flux, it remains unclear whether Chil1 deficiency affects macrophage differentiation itself.

      (7) The authors use the PDK activator PS48 and the ATP synthase inhibitor oligomycin to argue that increased glycolytic flux at the expense of OXPHOS promotes KC death. However, given the high energy demands of KCs and the fact that OXPHOS yields 15-16 times more ATP per glucose molecule than glycolysis, the increased apoptosis observed in Figure 4C-F could primarily reflect energy deprivation rather than a glycolysis-specific mechanism.

      (8) In Figure 1C, KC numbers are significantly reduced after 4 and 16 weeks of HFHC diet in WT male mice, yet no comparable reduction is seen in Clec4Cre control mice, which should theoretically exhibit similar behavior under identical conditions.

    1. eLife Assessment

      This study examines the role of the fungal pathogen Candida albicans in the progression of colorectal cancer, a relevant and urgent topic given the global incidence of colon cancer. While the findings are useful and provide solid experimental work and insight into how Candida may contribute to tumor progression, the small patient sample size, reliance on in vitro models, and absence of in vivo validation may limit its impact. This work will interest scientists studying cancer progression and the role played by pathogens.

    2. Reviewer #1 (Public review):

      Summary:

      This study addresses the emerging role of fungal pathogens in colorectal cancer and provides mechanistic insights into how Candida albicans may influence tumor-promoting pathways. While the work is potentially impactful and the experiments are carefully executed, the strength of evidence is limited by reliance on in vitro models, small patient sample size, and the absence of in vivo validation, which reduces the translational significance of the findings.

      Strengths:

      (1) Comprehensive mechanistic dissection of intracellular signaling pathways.

      (2) Broad use of pharmacological inhibitors and cell line models.

      (3) Inclusion of patient-derived organoids, which increases relevance to human disease.

      (4) Focus on an emerging and underexplored aspect of the tumor microenvironment, namely fungal pathogens.

      Weaknesses:

      (1) Clinical association data are inconsistent and based on very small sample numbers.

      (2) No in vivo validation, which limits the translational significance.

      (3) Species- and cell type-specificity claims are not well supported by the presented controls.

      (4) Reliance on colorectal cancer cell lines alone makes it difficult to judge whether findings are specific or general epithelial responses.

    3. Reviewer #2 (Public review):

      The authors in this manuscript studied the role of Candida albicans in Colorectal cancer progression. The authors have undertaken a thorough investigation and used several methods to investigate the role of Candida albicans in Colorectal cancer progression. The topic is highly relevant, given the increasing burden of colon cancer globally and the urgent need for innovative treatment options.

      However, there are some inconsistencies in the figures and some missing details in the figures, including:

      (1) The authors should clearly explain in the results section which patient samples are shown in Figure 1B.

      (2) What do a, ab, b, b written above the bars in Figure 1F represent? Maybe authors should consider removing them, because they create confusion. Also, there is no explanation for those letters in the figure legend.

      (3) The authors should submit all the raw images of Western blot with appropriate labels to indicate the bands of protein of interest along with molecular weight markers.

      (4) The authors should do the quantification of data in Figure 2d and include it in the figure.

      (5) In Figure 2h, the authors should indicate if the quantification represents VEGF expression after 6h or 12h of C. albicans co-culture with cells.

      (6) In Figure 2i, quantification of VEGF should be done and data from three independent experiments should be submitted. The authors should also mention the time point.

    1. Superstars are even more valuable than they seem, but you have to evaluate people on their net impact on the performance of the organization.

      انگار داره اینو میگه: ارزیابی عملکرد نباید مبتنی بر رتبه سازمانی باشه، باید ارزشی که طرف خلق میکنه (با حل مشکلات واقعی) رو بسنجی.

      چند تا معیار نادرست دیگه که اتفاقا خیلی توی مدل کارمندی مورد توجه هستن: 1. ساعت کار 2. زحمت فرد (قابل تقدیره ولی خب) 3. ارتباطات و پارتی و...

    1. The historical impact of technological progress suggests that most of the metrics we care about (health outcomes, economic prosperity, etc.) get better on average and over the long-term, but increasing equality does not seem technologically determined and getting this right may require new ideas.

      انگار داره میگه تکنولوژی سطح رفاه و سلامت رو به طور کلی بالا میبره اما این افزایش برای همه عادلانه نیست، بعضیا کمتر و بعضیا بیشتر گیرشون میاد، البته باز اینم اوکیه، ما دنبال "برابری" نیستیم ولی خب منم فکر میکنم حتی "عادلانه" هم نیست. سوال پیش میاد پس درمان "عدالت" چیه؟ جوابش رو نمیدونم اما فکر میکنم مفهوم "نوآوری" و "non-consumer" بتونه جوابش باشه، البته باید بیشتر فکر کنم بازم...

    1. if the citizens do not wish to have the royal family, it is quite realistic for it to be abolished.

      Context: Shows how democracy could end monarchy.

    2. Moreover, the rule of succession had prioritized males since in 1701, but in 2013, the Parliament changed the rules in such a way that the first child would ascend the throne regardless of gender.

      Context: Important modern legal change.

    3. When Queen Elizabeth passed away on September 8, 2022, British people stood in a queue of 10 km or longer to bid final farewell to her during her lying in state.

      Overview Shows the big public reaction and article focus

    1. emotionally salient

      Definition... The degree to which an event or piece of information is emotionally prominent or significant, making it more likely to capture attention and be remembered.

    2. Emotional stimuli presented in a speaker’s first languageconsistently evoke stronger autonomic responses and heightened activation in emotion-processing regions,including the amygdala and hippocampus

      Does this mean that people who are not bilingual do not have this? Or is it activated all the time if you only speak one language?

    Annotators

    1. Each of the sources you cite in the body text will appear in a references list at the end of your paper. While in-text citations provide the most basic information about the source, your references section will include additional publication details. In general, you will include the following information: The author’s last name followed by his or her first (and sometimes middle) initial The year the source was published The source title For articles in periodicals, the full name of the periodical, along with the volume and issue number and the pages where the article appeared. Additional information may be included for different types of sources, such as online sources.

      You must include a reference section so that it compliments your in text citations

    2. In-text citations document your sources within the body of your paper. These include vital pieces of information: with APA, the author’s name and the year the source material was published; with MLA, the author’s name and the page number where the reader can locate the quote.

      In text citations are important for many reasons, and there are key points of information needed to do so properly.

    1. Now that you have spent time considering different aspects of your topic in your exploratory essay, you will continue your research through our CNM library resources to help inform a larger audience about your topic.

      Using the library resources will help you in connecting with your audience

    2. This chapter explains that an informative research report answers a central research question using organized , reliable sources. It highlights the importance of using credible tools like Google Scholar and library databases to give clear, factual information about a specific topic.

  2. social-media-ethics-automation.github.io social-media-ethics-automation.github.io
    1. Merriam-Webster. Definition of CAPITALISM. December 2023. URL: https://www.merriam-webster.com/dictionary/capitalism (visited on 2023-12-10).

      It defines capitalism as private ownership and free market competition, but ignores the extreme inequality of ownership and the enormous power held by capital holders. It also views "competition" as always leading to good results, when in reality, competition can degenerate into monopolies, exploitation, or companies disregarding ethics in pursuit of profit maximization.

    2. Cornering the market means one person or company buys or controls so much of a product that they can basically decide its price. When they hold most of the supply, other people can’t compete or influence the market, so the controller can push prices up. This usually requires a lot of money and is often watched or restricted by regulators because it can hurt fairness and create an unfair advantage.

    3. Steve Jobs. December 2023. Page Version ID: 1189127326. URL: https://en.wikipedia.org/w/index.php?title=Steve_Jobs&oldid=1189127326 (visited on 2023-12-10).

      Whenever I see the page about Steve Jobs, I always think of him not just as a technological innovator, but more like a person who constantly challenges the norm. His story reminds me that success often comes from the courage to pursue what one truly loves, rather than just following the routine. Reading about his experiences makes one feel that entrepreneurship, creation, and even life itself can be full of passion and creativity.

    4. Merriam-Webster. Definition of CAPITALISM. December 2023. URL: https://www.merriam-webster.com/dictionary/capitalism (visited on 2023-12-10).

      This website basically talked about the definition of Capitalism, and used Capitalism in couple sentences. I agree that Capitalism is an economic system characterized by private ownership of capital goods.

    1. When shareholders buy stocks in a company, they are owed a percentage of the profits. Therefore it is the company leaders’ fiduciary duty [s11] to maximize the profits of the company (called the Friedman Doctrine [s12]). If the leader of the company (the CEO) intentionally makes a decision that they know will reduce the company’s profits, then they are cheating the shareholders out of money the shareholders could have had. CEOs mistakenly do things that lose money all the time, but doing so on purpose is a violation of fiduciary duty.

      CEOs are legally obligated to maximize profits, even if some decisions are clearly harmful to users or society. I always thought corporate greed was voluntary, but the explanation of fiduciary duty in the article makes me think that the system itself drives them to do so. So should we continue to blame individual leaders, or should we question the systemic structure that compels them to put shareholder interests above all else?

    2. Capitalism is: “an economic system characterized by private or corporate ownership of capital goods, by investments that are determined by private decision, and by prices, production, and the distribution of goods that are determined mainly by competition in a free market”

      In my opinion, the definition of Capitalism should be an economic system organized by personal ownership, without the interference from governments. I think the core of Capitalism is free marketing. Companies can decide the price for their products, and every company can compete each other. In this way, the price of that type of product can be adjusted automatically.

    1. In this code, the Profile component isn’t passing any props to its child component, Avatar:

      Since there is no argument inside the function. So there is no prop that we are passing to the child component : Avatar

      NO NO I was wrong about it

    1. UNTB ensures tailored support to areas and sectorsfor meaningful impact through capacities for innovation, introducing biotechnological research exchange,and strengthening Indigenous technologies.257 FAO’s e-Agriculture Strategy Guide was developed in 2018as a tool for Member States to improve food chain efficiencies and agricultural systems.258 Regionalbanks, including the African Development Bank and the Asian Development Bank, provide support inintroducing connectivity programs, aiming to close digital divides through broadening infrastructure andaffordability of technology.259 The programs focus on investment in technology and infrastructuraldevelopment, through collaborations with organizations like the World Bank and FAO.2

      How bodies leverage AI

    2. Strengthening food supply chains as a means to eradicate hunger is at the forefront of internationaldiscussions on food security.

      This paragraph has interactions between many bodies. and agreements.

    3. Universal Declaration of Human Rights (UDHR) (1948).179 Building on this, the 1966 InternationalCovenant on Economic, Social and Cultural Rights (ICESCR)

      International Agreements

    4. The Economic and Financial Committee (Second Committee) of the General Assembly plays a pivotalrole in promoting sustainable transportation.

      How GA 2 helps

    5. Regional Action Programme forSustainable Transport Development in Asia and the Pacific, which aids Member States in adopting roadsafety infrastructure and policies.

      Regional Agreement

    6. The Second Committee, the Economic and Financial Committee, addresses issues in eleven topicalclusters: macroeconomic policy; operational activities for development; financing for development; groupsof countries in special situations; globalization and interdependence; eradication of poverty; sustainabledevelopment; information and communication technologies for development; agriculture development,food security, and nutrition; human settlements and sustainable urban development; sovereignty of thePalestinian people over their natural resources; and the issue of global partnership.

      Outlines responsibility of GA2

    7. advancing economic and socialdevelopment to benefit today’s and future generations—in a manner that is safe, affordable, accessible,efficient, and resilient, while minimizing carbon and other emissions and environmental impacts.”31Realizing sustainable transport can help achieve 92% of the SDGs, including SDG 9 (industry, innovationand infrastructure) and SDG 11 (sustainable cities and communities)

      How GA 2 fits into the SDGs

    8. mplementation is conducted by Member States, the United Nations Secretariat,and other United Nations bodies, each of which independently align their work with General Assemblyresolutions

      How other bodies within the UN interact with the General Assembly.

    9. Chapter IV of the Charter established the foundational composition and capabilities of the GeneralAssembly.6

      Chapter that outlines mandate of General Assembly

    1. Like Europe, China lost up to half its population, or about 40 million people. And like Europe, the Chinese population had already been hard hit by famines in the decades before the plague arrived.

      This is insane that half of the population in China and Europe was lost.

    2. Caravans and official travelers could cover up to 200 miles per day, and for the first time, people from each end of the long trade route, such as the Polos, were able to visit the other endpoint and return home to tell tales of exotic cultures.

      200 miles in a day is a lot. Especially since the people back then only had caravans. This is cool that they were such motivated people to travel this far without giving up.

    3. Often, wealthy members such as Lübeck, Hamburg, and Danzig were not that interested in paying for poorer members’ defense. And in their first attempt, going to war against Denmark in 1361 after the sack of Visby, a lack of full participation resulted in a humiliating defeat.

      This is interesting. Providing a lack of full participation, it is not surprising that they resulted in a failure and defeat.

  3. social-media-ethics-automation.github.io social-media-ethics-automation.github.io
    1. Decolonization. December 2023. Page Version ID: 1189372296. URL: https://en.wikipedia.org/w/index.php?title=Decolonization&oldid=1189372296 (visited on 2023-12-10).

      The act of decolonization is a difficult and tricky one, due to the fact that with how long some cultures have been colonized, it would be difficult to distinguish between what is native culture and what was brought over by the colonizers. The cultures and habits that the colonizers have bought over might also have been integrated into and intertwined with local culture, making it even more difficult to distinguish.

    2. Olivia Solon. 'It's digital colonialism': how Facebook's free internet service has failed its users. The Guardian, July 2017. URL: https://www.theguardian.com/technology/2017/jul/27/facebook-free-basics-developing-markets (visited on 2023-12-10).

      This article explains how Facebook offers free internet service, but only to a limited extent. People were angry, because the free internet would only allow certain websites and offered only a few languages. This limited users' access and exposure. Even though I understand this would be frustrating, I wouldn't go so far as to call it "digital colonialism." If Facebook is offering something for free, its each person's choice whether to take it or leave it.

    1. What if government regulations said that social media sites weren’t allowed to make money based on personal data / targeted advertising?

      If the government made it so that companies were unable to sell their users data to a external buyer, the companies might pivot to a more ad based business model similar to a lot of model games and apps currently, where the website gets a bit of money to have a user click on a specific app. Or they might attempt to sell something to the user, and in order to maximize sales, make the free version of the app nearly unusable without any purchases similar to Spotify.

    2. If the social media site is funded by the government. There would be a big change in social media. First of all, probably be fewer advertisements since there is no need for profit. Government spending on social media would be considered a public good. What's more, it would have stronger regulations to protect the users, creating more transparency. On the downside, development might be slow, as government agencies tend to move more slowly than private tech companies, so updates and features could lag.

    3. What if there were a social media site funded by the government as a government service (e.g., democratic socialism)?

      The concern with a government-funded social media site is censorship. If the government is in control of the public's media, they can control the narrative. The danger in this is that they can heavily influence what people think is going on in the world and the public's opinion on it.

    1. True change cannot exist without acknowledging the harm one has caused. Claiming to have changed while continuing to defend the very behavior that led to incarceration is not accountability; it is avoidance. Mr. Combs repeatedly shifts between denying responsibility, seeking sympathy, and reshaping the narrative to suit his immediate needs. Real transformation is consistent, honest, and uncomfortable; it does not depend on who is watching or what outcome is desired. Until he confronts his actions as wrong and takes full responsibility, any claim of change is hollow.”

      Media points out Combs’ resistance to responsibility, reinforcing moral judgment in the narrative.

    2. All of this trauma was compounded by the impact of my testimony at my abuser’s trial. The investigation and pre-trial process threw me back into a world I had spent years desperately trying to suppress.

      Anonymous source shows ongoing trauma from public legal proceedings. This humanizes the story apart from legal facts.

    3. Combs is the third major criminal conviction of an influential man in the entertainment world since 2020. Singer R. Kelly was convicted in 2021 for racketeering and sex trafficking, and in 2022 for child pornography. He is serving a combined sentence of 31 years in federal prison. Former Hollywood producer Harvey Weinstein was first convicted of rape and a criminal sex act in New York, which was overturned in 2024 and retried — leading to another conviction this year. A separate conviction in Los Angeles for sexual assault and rape still stands. Weinstein was sentenced to 16 years in prison for the Los Angeles charges in 2022.

      Comparison to other celebrity cases frames narrative. There is a pattern highlighting celebrity abuse as a societal concern.

    4. While the defense attorneys at trial suggested that my time with Combs was akin to a ‘great modern love story,’ nothing could be further from the truth. Nothing about this story is great, modern, or loving—this was a horrific decade of my life stained by abuse, violence, forced sex and degradation.

      Vivid trauma language. Media emphasizes victim experiences over defense framing.

    5. During my time with Combs, I was in a constant state of hypervigilance, as I was always anticipating demands for sex acts or otherwise fearing retribution for any perceived slight,

      Words like, “hypervigilance” and “fearing retribution” refers to the trauma and psychological control. A direct victim quote adds emotional weight.

    6. To Ms. Ventura and the other brave survivors that came forward, I want to say first: We heard you,

      Judicial acknowledgment of victims. The tone frames survivors as courageous and emphasizes accountability. Victim-centered story.

    1. Twitter’s large user base makes it difficult for people to move to a new social media network, even if they are worried the new owner is going to ruin it, since the people they want to connect with aren’t all on some other platform.

      I think this sentence is really vivid, haha. It feels like everyone is in a crowded party. Even if you don't like the DJ's music, you still won't want to leave because your friends are here. The power of "friends are here" on social media is both endearing and frustrating.

    1. Jakie suplementy diety warto brać jesienią i zimą? Dr Tadeusz Oleszczuk [Sekrety Długowieczności]
      • Vitamin D3 (Witamina D3):
        • Crucial Supplement: Highly recommended for the autumn/winter season (September to April in Poland) because skin synthesis of D3 is inactive and most people have low levels (safe level is 50-80 ng/mL) [00:00:12], [00:00:33], [00:01:32].
        • Benefits: Supports immunity, reduces infection risk, and is vital for hormone production [00:01:17], [00:01:39].
        • Actionable Advice: Always check your current level before supplementation, and retest after 3-6 months to ensure the optimal level (50-60 ng/mL) is reached [00:01:24], [00:01:59].
      • Omega-3 Fatty Acids (Kwasy omega-3):
        • Component: Provides EPA and DHA, which are essential for brain structure (60% fat), nervous system function, and myelin sheaths [00:03:30], [00:03:38].
        • Functions: Exhibits anti-inflammatory effects and supports the heart, brain, and overall immunity [00:03:38].
        • Storage Tip: Liquid form should be consumed within one month of opening and kept in the refrigerator to prevent oxidation; capsules are more stable [00:03:48], [00:04:01].
      • Magnesium (Magnez):
        • Role: Helps manage stress, improves memory, and supports muscle function [00:07:05].
        • Essential Cofactor: Magnesium is required as a "motor" for the majority of enzymes in the body; deficiency impairs the function of the entire organism [00:07:35], [00:07:42].
        • Consumption: Choose easily absorbable and safe forms like magnesium glycinate [00:07:23]. Be mindful that diuretics like coffee and tea can deplete magnesium levels [00:07:46].
      • Other Key Supplements:
        • Vitamin C and Zinc: Support the immune system and shorten the duration of infections [00:05:03]. It's important to test your zinc level first to avoid harmful excess [00:04:18], [00:04:21].
        • Probiotics and Prebiotics: A healthy gut microbiota is the foundation of immunity [00:06:14]. Probiotics need prebiotics (e.g., resistant starch like cold potatoes) to thrive and create beneficial conditions [00:06:24], [00:05:39].
        • B Vitamins: A B-complex should be considered if the diet is poor, especially since B12 deficiency can be linked to nervous system issues and stomach problems [00:08:14], [00:08:29].
      • General Supplementation Rules:
        • Supplements should be individually chosen based on a person's lifestyle and real, confirmed deficiencies [00:09:16], [00:09:21].
        • When buying, always check the dosage on the label to ensure the amounts are effective and not just minimal [00:08:44], [00:08:56].
        • The foundation of strong immunity remains sleep, diet, and exercise [00:09:26].
    1. About half of U.S. states include gender identity in their civil rights code to protect against discrimination in housing and public places, such as stores or restaurants, according to the Movement Advancement Project

      In this quote, it gives national a bit of context by comparing Iowa to other states in the US, which helps provide a larger picture of what is going on nationally and how this is a bigger problem than just Iowa. It also shows framing because it uses info from an LGBTQ+ group, which influences how the issue is explained. The quote draws a picture of the states having these laws put in place is the norm but lacks more explanation of these differences of why some do have these laws and why others don't.

    2. Sixty-five such complaints were filed and accepted for investigation from July 2023 through the end of June 2024, according to Stiffler. Forty-three were filed and accepted from July 1, 2024, through June 19 of this year.

      When statistics or articles , its to show the news value of evidence, but ti feel like the article doesn’t explain what the complaints were about or how many were confirmed, which leaves out important context. This is an example of how data can be used to make an issue seem big or urgent and leaves the audience up to interpretation of what these said complaints were without fully explaining what it means.

    3. Not every state includes gender identity in their civil rights code, but Iowa was the first to remove nondiscrimination protections based on gender identity, according to the Movement Advancement Project, an LGBTQ+ rights think tank.

      when the quote says "Iowa was the first", it implies/ stresses the news value by explaining how Iowa is the first state to remove gender-identity protections, which makes the change seem more dramatic and significant. It also shows framing because it uses information from an LGBTQ+ think tank, which shapes how readers understand the action as a rollback of rights.

    1. Evidence suggests early developing human brains are preconfigured with instructions for understanding the world
      • New research suggests the human brain is preconfigured with structured electrical activity patterns even before sensory experiences begin.
      • UC Santa Cruz scientists used brain organoids—3D models of human brain tissue grown from stem cells—to study early brain electrical activity.
      • The brain's earliest neuron firings occur in complex patterns similar to the brain’s default mode, indicating an intrinsic, genetically encoded blueprint.
      • These early patterns emerge without any external sensory input, showing the brain has an inherent operating system for navigating and interacting with the world.
      • Organoids offer a unique way to study brain development and developmental disorders ethically, bypassing the inaccessibility of the fetal brain in the womb.
      • Understanding these patterns could aid in diagnosing and treating neurodevelopmental disorders and assessing the impact of toxins like pesticides and microplastics.
      • This research opens possibilities for developing new therapies including compounds, drug treatments, and gene editing that can be tested at the preclinical level in human tissue.

      Hacker News Comments

      • Many commenters found the innate, prewired nature of some animal behaviors fascinating, citing examples such as foals standing immediately after birth and Labradors instinctively swimming.
      • Discussion touched on the distinction between precocial and non-precocial animals, and how some behaviors are genetically encoded versus learned quickly after birth.
      • Several comments highlighted the mystery of how relatively limited DNA information can encode complex brain functions and behaviors.
      • Some pointed out that brains may encode useful priors or inductive biases that enable efficient learning from the environment.
      • There was curiosity about how innate programming and environmental learning interact, with some suggesting innate neural groups form first and then acquire functions through interaction.
      • Others weighed in on philosophy versus empirical science in understanding brain development, emphasizing the complexity and that much remains unknown.
      • Additional remarks described how genetic, epigenetic, and external factors collectively shape brain development and behavior.

      These combined perspectives underscore excitement about the new findings and the broader implications for neuroscience, genetics, and understanding innate versus learned behaviors in humans and animals.

    1. munificence

      The OED defines "munificence" as: The quality of being munificent; great generosity or liberality in giving.

      The word is used for a mysterious Count showing that the Duke is aware that his story may have been off-putting, and he must now save face by praising his new socio-political target. However, to use a word that is antithetical to who the Duke is draws larger parallels between who he associates with, who he pretends to be, and who he really is. The Duke is not giving in the sense that he should be praised, he is giving in the sense that gives people reasons to fear him. By praising this Count's munificence, he can downplay his own lack of it.

    2. My Last Duchess

      Depending on the edition of the poem, after the title, there is supposed to be in italics, and all capitalized the word/name FERRARA.

      However, It is important to note that the poem did not always feature FERRARA as an epigraph—it was intentionally added by Browning in later editions of the poem, hence scholar Louis S. Friedland’s exploration of the history of the Duke Vespasiano Gonzaga, and comparison to Duke Alfonso II d’Este.

      What was discovered was that despite both Dukes having multiple marriages and young wives, Gonzaga’s wife, Diana Folch de Cardona, did not die young, unlike Lucrezia de' Medici—a point the poem hints to the reader. Through Friedland’s comparisons of the histories between the two to the poem, the final verdict aligned with d’Este as the mysterious Duke.

    3. I gave commands; Then all smiles stopped together. There she stands As if alive.

      The Duke states that he "gave commands" in order for the Duchess to behave--whether this means a death sentence or exile have no difference to the Duke as she is dead to him either way.

      However, "Lucrezia suffered from chronic lung-trouble, that her father and her brother Francesco were kept constantly informed with regard to the progress of her last illness" (Friedland 673) which implies Lucrezia succumbed to illness. While the Duke married her as a political advantage, if he were to kill her, he risks a war with her family, the Medicis; once again the Duke must put on a front to exert dominance over his subjects and guests. Whether she died by his hand, or from illness is not the issue the Duke wants attention on, but rather, that he can decide when she dies, and anyone within his court is no different.

    4. She thanked men—good! but thanked Somehow—I know not how—as if she ranked My gift of a nine-hundred-years-old name With anybody’s gift. Who’d stoop to blame This sort of trifling?

      Women (and girls) of nobility were meant to show appreciation and be impressed by the immediate men in their lives, such as family, their husbands, and on occasion, men who served them after great acts of duty, such as military feats in war.

      The Duke is masking his anger and lack of control over the Duchess--he believes his "nine-hundred-years-old name" should warrant complete control over her, and is offended over the fact that she'd "thank men good," without any explanation over what she would thank them for (not to mention, she is fond of many "trivial" things, not just men, as he lists them before making said statement).

      For historical context, the Duchess, Lucrezia is about 13-16 years old depending on when these offenses take place; she has yet to reach emotional, mental, and physical maturity. Without considering the Duchess's age and her lack of experience, he took her behavior as uncouth and as an affront to his dominance. The Duke's reaction lacks emotional maturity as he lets his jealousy be the vessel in how he treats his wife.

    5. That’s my last Duchess painted on the wall, Looking as if she were alive.

      Lucrezia de' Medici

      The image is a painting of Lucrezia de' Medici, and though this was painted for her brother one year after her passing, this painting could be used as the stand-in for the image the Duke is describing. The Duchess' somber gaze is antithetical to how the Duke describes the Duchess as a person, which makes the reader question how much truth could the Duke be speaking. Is it possible that the Duke is imagining a smile on her face because he feels guilty? Is the Duchess' stoic look a reflection of her feelings, or was it "by design" as the Duke later states?

    1. Many who were engaged in the Department of Government Efficiency, the group who ransacked the government on orders from Elon Musk, are now worried they may face consequences for their actions earlier this year.

      AND THEY SHOULD!!

    1. The research didn’t stop at identifying this ‘neural fingerprint’. It found a connection between these voice-selective brain regions and a child’s social communication skills. This tells us that the neural traces of a mother’s voice in a child’s brain can predict the child’s social communication abilities. So, the influence of a mother’s voice isn’t limited to early childhood but has far-reaching implications throughout a child’s life. From bedtime stories and family dinners to the very first sounds heard in the womb, the mother’s voice is a constant, and it shapes our emotional and social abilities just as definitively as our fingerprints do.

      references too

    2. Can a Mother’s Voice Truly Calm and Connect? Here’s What Science Shows Lisa SandersMarch 5, 2025Child Sleep Consultant, Educational Material

      hormone levels, specifically, it can lower cortisol, which is the hormone that makes us feel stressed. At the same time, it increases oxytocin, which is often called the 'love hormone' or 'bonding hormone'. A mom's voice can make a child feel less stressed and more socially connected.

    1. Were it no for my helpless bairns I wadna care to dee.

      This line doubles as a potential moment of autobiographical poetry for Johnston. In her autobiography, published in the same book as "The Last Sark," she writes that even though the abuses of her youth left her suicidal many a time:

      "I did not, however, feel inclined to die when I could no longer conceal what the world falsely calls a woman’s shame. No, on the other hand, I never loved life more dearly and longed for the hour when I would have something to love me-and my wish was realised by becoming the mother of a lovely daughter on the 14th of September, 1852."

      After the birth of her daughter, her tone toward her personal death in her autobiography shifts, no longer claiming suicidal ideation, and instead a will to live.

    2. oh! John, catch haud o’ him

      Johnston keeps up a strict rhyme scheme throughout the poem - aabbccbb, etc. However, the speaker's somewhat fourth wall breaking exclamation here tips that rhyme scheme on its head. Blin', in the Scots dialect, is a near rhyme with the word him, though that rhyme is lost some in other accents. Beyond the loose rhyme here, the outburst also changes the otherwise even flow of the rhythm through the poem.

      The thought of her child falling to the floor forces the speaker out of her careful patterns, highlighting the mother's love and care for her children.

    3. puir

      Puir in modern Scots (from 1700 onward) can mean either a "pauper or beggar", or "someone in considerable need of help". While this definition is also true for older Scots, there was also a secondary definition - one that meant "guiltless" or "free from moral corruption". With this older definition in mind, this line comes to have a similarly twofold meaning; one in which all the poor will die at the careless hands of the rich, but also one where the poor working-class are the class of purity, while the gentry are corrupt.

    4. What care some gentry if they’re weel though a’ the puir wad dee!

      The refrain throughout this poem works as a sort of a war cry. The rest of the poem reads as a lament between wife and husband, something that could come from almost any middle class or lower house even to this day. However, the use of the refrain takes readers from the world of the poem back out into the wider world of working-class Scotland.

    5. The Last Sark

      "The Last Sark" is a dialect poem, written in the Scots language. As Florence S. Boos notes: "The everyday speech of all classes of Victorian Scotland was probably some version of Scots" (55). While it was common for Scottish authors to write in Standardized English, dialect poetry tended to be looked down upon and efforts of Scottish poets to write in traditionally English poetic forms, such as blank verse, removed them from the common Scot (54). As such, Scottish (and especially Glaswegian) working-class poets "expected no wider English audience" (56) and instead wrote more towards an audience of their peers.

    1. metimes the change is in the

      This reminds me of our own personal moʻolelo. I had a conversation with one of my hoa from Keaukaha about Kamapuaʻa and how she had a different recollection of the moʻolelo from her other friend who was in the next town over, but the ending/moral of the story was still the same. It's interesting to see this play out in different cultures as well.

    2. at Fla

      I find this bit very funny. I was curious and decided to look up Robert Flaherty and what kind of movies he's done and out of the 24 movies he's created, according to Google, 5 of them are related to ʻōiwi peoples. Anyway, showing the main character as "uncivilized" by having Nanook bite the record to figure out what kind of material it is, is harmful to Inuit, and then to go around and to ask the same people you are making fun of to fix your equipment is a crazy concept. What do you gain from making fun of the same people, and in a way, calling them uncivilized, but then asking the same people to fix your own equipment? Are they uncivilized or not?

    1. Leave no profit—give no pleasure, To the toiler’s human breast?

      Cook ends this stanza with an indictment: society denies both material gain ("profit") and emotional fulfillment ("pleasure") to the laboring class. She ends by humanizing the worker to remind society that workers are people too.

    2. Shall our Men, fatigued to loathing. Plod on sickly, worn, and bowed? Shall our Maidens sew fine clothing, Dreaming of their own, white shroud?

      In poems that protested the oppression of the working class, domesticity and 'feminine labor' was often left out of the discussion; however, Cook appeals to both men and women in her poem. This results in a wider audience being included in the narrative, and leads to a larger group speaking out against their oppressors.

    3. Work on bravely, GOD ‘s own daughters! Work on stanchly, GOD ‘s own sons! But till ye have smoother waters, Let Truth fire her minute guns!

      This stanza is repeated twice throughout the poem. The sarcastic tone and the repetition of the stanza emphasizes Cook's message. She gives life to the worker and encourages work while also suggesting the workers stand up for themselves. A "minute gun" is a gun that fires every minute, so Cooke is encouraging the working class not to be silent about the injustices they face.

    4. Shall the mercy that we cherish, As old England’s primest boast, See no slaves but those who perish On a far and foreign coast?

      In the article ""Of "Haymakers" and "City Artisans": The Chartist Poetics of Eliza Cook's "Songs of Labor,"" Solveig Robinson states: "Cook uses the Chartist trope of the domestic slave and a string of rhetorical questions to challenge the effects of unregulated labor, not only on the workers themselves, but on the society as a whole."

      https://www.jstor.org/stable/40002678

    5. The richest crown-pearls in a nation Hang from Labour’s reeking brow.

      The "reeking brow" Cook mentions is a reference to the sweat on a worker's brow. This serves as a metaphor comparing sweat to pearls which elevates work to a royal adornment. This bypasses the levels of traditional hierarchy by location national wealth in workers' bodies.

    6. Let Man toil to win his living, Work is not a task to spurn; Poor is gold of others’ giving, To the silver that we earn.

      Each stanza follows a specific rhyming pattern. In each stanza, the end words of the first and third lines rhyme and the second and fourth also rhyme. The rhyme scheme of the poem results in an up-beat cadence when the poem is read aloud. The cadence really juxtaposes the serious tone of the content.

    1. gaffer

      According to the OED, there are multiple potential meanings for this term when this poem was written. It could have been a general term of address, especially for an older man or it could have been a way to refer to a master, governor, or foreman. This stanza itself does not make the distinction clear, but considering the focus in the third stanza on "men of fourscore" (line 23) it could be the first definition; however, a foreman or master would produce the image of control Winter has over the speaker.

      https://www.oed.com/dictionary/gaffer_n?tab=meaning_and_use#3371962

    2. Shouting and pelting—what bliss to fall Half-smother’d beneath the well-aim’d ball! Men of fourscore, did ye ever know Such sport as ye had in the drifting snow?

      The speaker is connecting another kind of joy to the snow through the image of boys having a snowball fight. She speaks to elderly men to bring back the memory of the good times they had in the snow. This brings the two groups of people together.

    3. “Snow”

      "Eliza Cook, New Media Innovator" points out that part of the appeal of Cook's work is the fact that she focuses on everyday experiences and often invoked a cozy feeling for the readers. In this poem, she does not overtly focus on the challenges or politics surrounding England at the time. Instead, she creates a beautiful image of winter and a snowy day that any person could enjoy while subtly addressing Victorian norms.

      https://wtamu-primo.hosted.exlibrisgroup.com/permalink/f/ahoafg/TN_cdi_walterdegruyter_books_10_1515_9781474475945_005

    4. Smoother and purer

      The speaker draws attention to the whiteness and purity of the snow here and line 8. In Christianity, particularly Isaiah 1 and Psalm 51, the whiteness of snow is a visual representation of the forgiveness a person can receive. The line "'Tis the fairest scene we can have below" (line 15, 31) most likely refers to heaven. The speaker draws the reader's attention to the biblical connections with the snow.

    5. marching forth

      The word "marching is usually connected to military movement. This presents Winter as an organized and potentially dangerous force that the speaker enjoys seeing. This line may also explain why the first line characterizes Winter as brave. Most Victorians considered fighting and dying for ones country as brave.

    6. icicle gems

      This phrase as well as "delicate carpet so richly spread"(line 12) "glittering diadems crown'd" (line 14), and "ermine mantle" (line 30) invoke an image of natural riches that are available to everyone in the area instead of those who are very wealthy. While the speaker does not explicitely state it, the snow allows individuals who, otherwise, would not have access to material riches to have them in the snow.

    1. When domestic violence is documented in case files, there are additional complications. Oncedomestic violence is identified, the system expectation is for the mother to end the relationshipwith her abusive partner or be found to have failed to protect her children. The documentationof violence also results in quick movement toward removal of children from the mother’s careand the batterer’s access—even when removal and placement in alternative care is known tobe extraordinarily traumatic for children,

      With limited resources available the mother is being expected to access or naturally have and utilize resources to provide for her children and protect them, stablize and heal them, as a single parent or lose her children. If a mother chooses to move her children to the streets because there is not access to shelters and her family cant take her and her children in the children are torn away from the only person with any perspective and lived experience as well as a fully developed brain being able to help them overcome the trauma experienced

    Annotators

    1. The solution is always about finding ways to “help” and to restoreability of some kind, thus reinforcing the normal and the normative as desirablespaces that all must ennulate,

      a

    2. Under“the medical model,” disabled and queer bodies were pathologized as lesser,deviant, and undesirable, with profound consequences. Eugenic laws, for ex-arnple, were instrumentalized across the world to sterilize, institutionalize, andat tirnes even eliminate queer and disabled bodies.

      a

    3. In the United States, for example, we identifysome plants with such names as Japanese knotweed or Chinese privet and yetanoint the Georgia peach as American even though it is of Chinese origin.Repeatedly, desirable objects become US American while the undesirableretain their foreign morikers.’ Phe majority of US crops are plants of foreignorigin, while most insects that cause damage are considered native.”

      a

    4. Rememory can help us recognizethe profound botanical amnesia that produced xenophobie concepts such as in-vasive species, “discovery” of plants long known to natives, and translating theexuberance of plant reproduction into the decidedly human registers of “sex.”As we rememory the history of botany, the past opens up.

      whogets to knwo

    5. s Edouard Glissant succinctly observes, “the West isnot a place, it is a project.”*! Linderstanding colonialism as a project allows usto see its vast infrastructures in academic disciplines.

      a

    6. native and foreign. Are these historical terms? As we will see in the later dis-cussion of invasion biology, historicizing botany allows us to recognize these asimprecise, indeed political, categories rather than natural or biological ones.

      a

    7. Some sugeest that western science is itself best understood as an “ethnosci-ence’ and that appreciating its roats, routes, and evolutions are important anduseful, Our knowledge production has been far too roediated by the politics ofthe academy.'* The field of botany, like other fields, has “disciplined” itself intoa narrow, myopic field, with a prescribed object of study (the plant world) andprescribed methods (the scientifte rnethod). Disciplinary education enablesexploring the world from particular perspectives, reproduced generationally—perspectives that are taught, learned, rehearsed, practiced, remembered, andthen replicated endlessly.

      a

    8. The history ofcolonial botany is a story about more than plant worlds—how plants, animals,and colonized humans were used by and for the colonial project. By centeringthe plant, we see how colonists remade plants in their image, for their needs,consumption, and profit and for empire. While my focus is botany, revealingand resisting the hauntings of colonialism in botany reveals these same bssuresin science as a whole.

      a

    9. We get to ask,Why this canon? Why is this the center of the narrative of the plant world?importantly, how might we narrate otherwise? In challenging Linnaean sexualbinaries, we challenge all binaries, Surely there are always more than two sideste every issue? Not a singular or binary view but a polyphonic, polybotanicalimagination. In revisiting the labyrinth of infinite plant hfe, [ urge us to seebotany not as a site of the dark unknown of colonial scripts but as a site of joyfuland playful exploration for flourisbing botanical furures.

      a

    10. when colonial explorers in Al-rica, Asia, and the Americas described species they encountered, the diversityof those species astonished and overwhelmed. When Linnaeus began his ca-reer, “natural history was a mess, and people needed guidelines,”

      a

    11. Little did Irealize that my botanical artwork followed in a long history of the sciencessteeped in histories of sexism, racism, and colonialism, While many peopleacross the world observed, studied, drew, painted, and used their knowledgeof plants, only a few were allowed the privilege of a professional life in botany.

      a

    12. Botany Hourished during colonial expansion as explorers “discovered” atreasure trove of plants chicing their global voyages. At its peak, botany wasbig business, fucling commerce and propelling the growth of merchant capi-talism.”

      a

    13. She writes, “through textual practices and other means, women andgender-tagved activities were placed into a botanical separate sphere, set apartfroro the mainstream of the budding science.”* By the mid-nineteenth cen-tury, the profession of botany was thoroughly a masculine enterprise and theascendant male botanist its celebrated prototype. Likewise, we see the erasureof artisanal and working-class botanists.’

      primitive accumulation

    1. This opportunity may also allow music educators to learn techniques from the current paraprofessional working with the student with differences and disabilities that may be useful in the music classroom.

      This makes me think about how I could learn a lot from working closely with paraprofessionals. Seeing the techniques they use with students who have differences or disabilities could give me new ideas for how I support all my students in the music classroom. It reminds me that I don’t have to figure everything out on my own.

    2. It will become clear how a student communicates, processes information, and uses successful adaptations, as well as how their unique personality traits affect them in the learning environment.

      After working with a student who had a processing delay during my student teaching, I realized how important it was to reflect right after teaching. One class, I noticed that the student consistently came in early during a call-and-response rhythm activity. In the moment, I simply helped to the best of my ability. But as soon as the class ended, I wrote down what happened, how the student processes information, and what strategies seemed to help them most.

    3. However, practicing music educators are encouraged to utilize the observation protocols and other strategies to obtain on-the-job and authentic experience through self-imposed observation, and discussion within the special education framework.

      During my observations of seeing a middle school general music class, I worked closely with a student who had sensory sensitivities. I noticed that loud, sudden sounds often caused them to shut down which made it hard to participate in full-class activities. When seeing their reactions, I realized that using noise-canceling headphones during particularly loud sections and giving clear, step-by-step instructions helped them stay engaged and gave the student space to succeed.

    1. “Here,” said the Nagib, addressing the katib, “take thy wife and lead her away,for she is thine truly.Then, turning to his guards and pointing to the fellah, he said, “Give this manfifty blows of a courbash [hippopotamus hide whip] on the soles of his feet.”The katib walked off with his wife, and the guards gave the fellah fifty blowsof a courbash on the soles of his feet.Next came the fruiterer and the butter merchant in their turn.“Here,” said the Nagib to the fruiterer, “here is thy money; verily didst thoutake it from thine own purse, and never did it belong to him by whom thou artaccused.”Then, turning to his guards and pointing to the butter merchant, he said, “Givethis man fifty blows of a courbash on the soles of his feet.”

      More repetition

    Annotators

  4. www.youtube.com www.youtube.com
    1. Storybook and Vitest together streamline the entire UI workflow by turning each component state into both a design reference and an automated test. Developers can instantly see layout or behavior changes in isolation, reducing the need for manual visual checks. Because Storybook treats each story as a test, it removes much of the setup effort normally required for UI validation. The built-in accessibility panel also makes issues easier to understand by highlighting them directly on the component. Overall, this integration helps teams build more consistent, accessible, and high-quality interfaces with far less friction.

    2. Yann Braga | Storybook Vitest | ViteConf 2025

      Storybook is very useful because it allows you to test frontend components, run tests for accessibility, and even write code based on interactions with the frontend. The writing code seems particularly useful, since a lot of people are more specialized in just frontend or just backend, so a frontend designer might not be the best at writing code. It's also convenient how well it works in tandem with Vitest.

    3. Yann Braga | Storybook Vitest | ViteConf 2025

      Storybook makes testing way easier by letting you focus on individual UI components instead of the whole app. Each Storybook “story” works like a built-in test, so you can check how a component behaves, how it looks, and whether it’s accessible. You can even auto-generate stories, record interactions, and instantly see what breaks when you change something. Overall, it shows that since modern apps are made from tons of small pieces, it’s way easier to test those pieces directly rather than trying to test everything at once.

    4. Yann Braga | Storybook Vitest | ViteConf 2025

      Storybook and Vitest work together to create a streamlined, unified testing experience where every Storybook story essentially becomes a test. Because stories already show how a component should look and behave, Vitest can use them as the source of truth—meaning less duplicated test setup and faster feedback. This integration lets developers visually inspect interactions, automatically detect errors, and run all tests directly inside Storybook with immediate pass/fail results. Overall, the toolset makes UI testing easier, more efficient, and more accessible for both new and experienced frontend developers.

    5. This video explains how Storybook becomes the main place to test UI components. It brings together interaction tests, visual checks, and accessibility tests. Storybook works with Vitest, Playwright, Chromatic, and Axe to make this possible. I found the automation the most interesting because it removes a lot of manual work.

    6. Yann Braga | Storybook Vitest | ViteConf 2025

      Where he shows the accessibility tab and explains how Storybook highlights issues directly on the component, that part made me realize how helpful the tool is for catching problems early. Instead of waiting until the end or ignoring accessibility completely, it shows exactly what needs fixing and why.

    7. Yann Braga | Storybook Vitest | ViteConf 2025

      I liked how the video explained that testing shouldn’t just check if a component works, but also how it looks and how users interact with it. It was cool to see how Vitest can handle all of that in one place. It made the idea of testing feel a lot more organized and easier to understand.

    8. Yann Braga | Storybook Vitest | ViteConf 2025

      Storybook is a useful tool that combines three dimensions of testing, visual, interactions, and accessibility, without having to acquire the specialized tools for each dimension. This ensures that the process of testing is more efficient, less time consuming, and requires less resources. Storybook allows a programmer to focus on certain sections or parts of the program instead of trying to accommodate the whole program. It is useful in showing the results of the test using an interface and it even has an interaction recorder that records any interaction with the program. Storybook is a genius idea and it is executed well. It allows programmers to easily test large projects, and makes the testing process much more accommodating.

    9. Yann Braga | Storybook Vitest | ViteConf 2025

      It is emphasized that every story in Storybook represents a rendered state of your UI, and in their view, every story is a test. When using Vitest, Storybook automatically detects it and provides capabilities to run tests on top of these stories. There's a button within the Storybook UI to run all tests, providing immediate visual feedback on passing or failing states.

    10. One of the highlights of the video was when you walked through how Storybook works hand-in-hand with Vitest. The moment you isolated a single component in Storybook and then demonstrated how easily it can be tested with Vitest really stood out. It clearly showed how the two tools streamline both visual and functional testing, making the whole workflow feel much more efficient and beginner-friendly.

    11. Yann Braga | Storybook Vitest | ViteConf 2025

      Yann Braga provides a demonstration of how Storybook and Vitest work together so that tests are written for the components that make up the app. Stories capture each component state, while Vitest renders the stories to run the tests. Storybook also helps to speed up the testing process by showing exactly where the errors in the code are located which helps developers not waste time searching for them.

    12. Component testing is 3 dimensional, requiring interactions, visual, and accessibility. Interactions include the program functionality and operating in the manner you sought for it. Visual includes the vision of the program and there aren't assets you like for the UI. Finally, accessibility is the ability to make the program follow regulations and enable users to access it. The importance of testing is to ensure you're demonstrating a product that consumers can utilize.

      Storybook enables the user to design programs feasibly and modify the program at different scales. This can be at the smallest level or alternatively on a larger scale.

    13. Storybook and Vitest makes it east to run tests directly against apps built for componnents. Each storybook story becomes a test case, so UI states thst s designers and developers already document can be automatically validated. With interaction test using play function, Storybook can simulate real user behavior and assert outcomes through Viest. It creates a a fast visual testing workflow that lets teams catch bugs at the component level before they ever reach full end to end assets.

    14. Yann Braga | Storybook Vitest | ViteConf 2025

      This video really highlights how powerful Storybook becomes when combined with Vitest and MSW. I like how it turns component testing into something visual and practical instead of just reading console logs. Being able to mock API responses and test different UI states directly inside Storybook saves so much time, especially when trying to catch edge cases like 500 errors or missing data. It also makes collaboration between designers and developers a lot smoother because everyone can actually see the component behavior instead of guessing what the code is doing. Overall, this feels like a much more efficient workflow for building reliable and accessible interfaces.

    15. Yann Braga | Storybook Vitest | ViteConf 2025Yann Braga | Storybook Vitest | ViteConf 2025

      One of the main points he makes is that your Storybook stories can double as tests. Since stories already describe how a component should look and behave, Vitest can use those stories as the “truth” for testing. That means less duplicated work you don’t have to manually write new test setups for every small UI variation.

    16. I learned that app testing involves different aspects to ensure a good user experience. First, there's component testing, which makes sure the component works as expected, looks right visually, and is accessible to everyone.

      To achieve this, the video explained how Storybook brings various specialized tools together. For checking if components work and interact correctly, it uses Vitest and Playwright. I saw how Storybook can automatically detect Vitest and run tests on stories, even in watch mode.

    17. Yann Braga | Storybook Vitest | ViteConf 2025

      What stood out to me is how Storybook keeps everything in one place such as interactions, accessibility checks, and visual regression tests. The speaker mentions that fixing a component instantly updates all the related tests, which makes debugging feel way less chaotic. It’s like the tool encourages good testing habits just by being convenient. It also makes testing feel less like a separate task and more like a natural part of the development workflow. Seeing issues update in real time helps you understand the impact of your changes much faster, which is very good.

    18. ViteConf

      Storybook working as a single solution for UX design is genius. Usually one would focus on interactions, then move onto visuals if there was time. After this, accessibility would be considered. However, all these aspects are fundamental to UX design. Sometimes, the reason that things like visuals and accessibility are a second thought is often because of limitations like time and resources. Having to integrate several tools to help with your design can be costly, so having a single solution really saves developers and the organizations they belong to.

    19. Yann Braga | Storybook Vitest | ViteConf 2025Tap to unmute2xYann Braga | Storybook Vitest | ViteConf 2025ViteConf 1,938 views 3 weeks agoSearchCopy linkInfoShoppingIf playback doesn't begin shortly, try restarting your device.Pull up for precise seekingPause0:48•Up nextLiveUpcomingCancelPlay NowYou're signed outVideos you watch may be added to the TV's watch history and influence TV recommendations. To avoid this, cancel and sign in to YouTube on your computer.CancelConfirmShareInclude playlistAn error occurred while retrieving sharing information. Please try again later.0:001:02 / 23:51Live•Watch full video••10:29How To Use GitHub For Beginnerscorbin599K views • 8 months agoLivePlaylist ()Mix (50+)9:54Every Type Of API You Must Know Explained!Codist 452K views • 1 month agoLivePlaylist ()Mix (50+)56:29Frontend Testing Stack: Storybook, Vitest, PlaywrightChromatic5.3K views • 5 months agoLivePlaylist ()Mix (50+)22:52Vladimir Sheremet | The State of Vitest | ViteConf 2025ViteConf1.9K views • 1 month agoLivePlaylist ()Mix (50+)4:47Parent Teacher Conference - SNLSaturday Night Live4.5M views • 1 month agoLivePlaylist ()Mix (50+)5:54An old mans advice.Bernard Albertson31M views • 12 years agoLivePlaylist ()Mix (50+)18:54how i made my websiteshar560K views • 7 months agoLivePlaylist ()Mix (50+)24:25you need to learn SQL RIGHT NOW!! (SQL Tutorial for Beginners)NetworkChuck1.9M views • 3 years agoLivePlaylist ()Mix (50+)29:23Matt Kane | The Future of Astro | ViteConf 2025ViteConf3.1K views • 4 weeks agoLivePlaylist ()Mix (50+)12:01How to Articulate Your Thoughts More Clearly Than 99% of PeopleLeila Hormozi1.9M views • 3 months agoLivePlaylist ()Mix (50+)26:36Jacob Gross | Rolldown chunking in the wild | ViteConf 2025ViteConf1.4K views • 1 month agoLivePlaylist ()Mix (50+)11:26The Harsh Truth About Being a Developer in 2025Web Developete36K views • 1 month agoLivePlaylist ()Mix (50+) Yann Braga | Storybook Vitest | ViteConf 2025

      This development tool is very useful to applying all of the user interface elements that we have discussed to be important. For example, it was interesting that they provide accessibility test to expose the issues to creators. This very important because many creators might not see the issues on their own so this can be very beneficial to making your app/website successful

    20. Yann Braga | Storybook Vitest | ViteConf 2025

      The speaker explains that Storybook helps developers work on components in isolation and serves as a central hub for various testing dimensions.

    1. eLife Assessment

      This is a valuable study describing transcriptome-based pheochromocytoma and paraganglioma (PPGL) subtypes and exploring the mutations, immune correlates and disease progression of cases in each subtype. The cohort is a reasonable size and a second cohort is included from the Cancer Genome Atlas (TCGA). One of the key premises of the study is that identification of driver mutations in PPGL is not complete and that compromises characterisation for prognostic purposes. This is a solid starting point on which to base characterisation using different methods.

    2. Reviewer #1 (Public review):

      This study presents an exploration of PPGL tumour bulk transcriptomics and identifies three clusters of samples (labeled as subtypes C1-C3). Each subtype is then investigated for the presence of somatic mutations, metabolism-associated pathway and inflammation correlates, and disease progression.

      The proposed subtype descriptions are presented as an exploratory study. The proposed potential biomarkers from this subtype are suitably caveated and will require further validation in PPGL cohorts together with mechanistic study.

      The first section uses WGCNA (a method to identify clusters of samples based on gene expression correlations) to discover three transcriptome-based clusters of PPGL tumours using a new cohort of n=87 PPGL samples from various locations in the body.

      The second section inspects a previously published snRNAseq dataset, assigning the published samples to subtypes C1-C3 using a pseudo-bulk approach.

      The tumour samples are obtained from multiple locations in the body, summarised in Fig1A. It will be important to see further investigation of how the sample origin is distributed among the C1-C3 clusters, and whether there is a sample-origin association with mutational drivers and disease progression.

      Comments on revisions:

      In SupplFile3 (pdf) - please correct the table format. The contents are obscured due to the narrowness of the table columns.

      Deposit the new RNAseq data (N=87 cases, N=5 controls) in an appropriate repository; see "Data on human genotypes and phenotypes" at https://elife-rp.msubmit.net/html/elife-rp_author_instructions.html#dataavailability

    3. Reviewer #2 (Public review):

      Summary:

      A study that furthers the molecular definition of PPGL (where prognosis is variable) and provides a wide range of sub-experiments to back up the findings. One of the key premises of the study is that identification of driver mutations in PPGL is incomplete and that compromises characterisation for prognostic purposes. This is a reasonable starting point on which to base some characterisation based on different methods.

      Strengths:

      The cohort is a reasonable size, and a useful validation cohort in the form of TCGA is used. Whilst it would be resource-intensive (though plausible given the rarity of the tumour type) to perform RNAseq on all PPGL samples in clinical practice, some potential proxies are proposed.

      Weaknesses:

      Performance of some of the proxy markers for transcriptional subtype is not presented.

      Limited prognostic information available.

      Comments on revisions:

      Having reviewed the responses to my comments and associated revisions, I am satisfied that they have been addressed.

    4. Author response:

      The following is the authors’ response to the original reviews.

      Reviewer #1 (Public Review):

      This study presents an exploration of PPGL tumour bulk transcriptomics and identifies three clusters of samples (labeled as subtypes C1-C3). Each subtype is then investigated for the presence of somatic mutations, metabolism-associated pathways and inflammation correlates, and disease progression. The proposed subtype descriptions are presented as an exploratory study. The proposed potential biomarkers from this subtype are suitably caveated and will require further validation in PPGL cohorts together with a mechanistic study.  

      The first section uses WGCNA (a method to identify clusters of samples based on gene expression correlations) to discover three transcriptome-based clusters of PPGL tumours. The second section inspects a previously published snRNAseq dataset, and labels some of the published cells as subtypes C1, C2, C3 (Methods could be clarified here), among other cells labelled as immune cell types. Further details about how the previously reported single-nuclei were assigned to the newly described subtypes C1-C3 require clarification.

      Thank you for your valuable suggestion. In response to the reviewer’s request for further clarification on “how previously published single-nuclei data were assigned to the newly defined C1-C3 subtypes,” we have provided additional methodological details in the revised manuscript (lines 103-109). Specifically, we aggregated the single-nucleus RNA-seq data to the sample level by summing gene counts across nuclei to generate pseudo-bulk expression profiles. These profiles were then normalized for library size, log-transformed (log1p), and z-scaled across samples. Using genesets scores derived from our earlier WGCNA analysis of PPGLs, we defined transcriptional subtypes within the Magnus cohort (Supplementary Figure. 1C). We further analyzed the single-nucleus data by classifying malignant (chromaffin) nuclei as C1, C2, or C3 based on their subtype scores, while non-malignant nuclei (including immune, stromal, endothelial, and others) were annotated using canonical cell-type markers (Figure. 4A). 

      The tumour samples are obtained from multiple locations in the body (Figure 1A). It will be important to see further investigation of how the sample origin is distributed among the C1C3 clusters, and whether there is a sample-origin association with mutational drivers and disease progression.

      Thank you for your valuable suggestion. In the revised manuscript (lines 74-79), Figure. 1A, Table S1 and Supplementary Figure. 1A, we harmonized anatomic site annotations from our PPGL cohort and the TCGA cohort and analyzed the distribution of tumor origin (adrenal vs extra-adrenal) across subtypes. The site composition is essentially uniform across C1-C3— approximately 75% pheochromocytoma (PC) and 25% paraganglioma (PG)—with only minimal variation. Notably, the proportion of extra-adrenal origin (paraganglioma origin) is slightly higher in the C1 subtype (see Supplementary Figure 1A), which aligns with the biological characteristics of tumors from this anatomical site, which typically exhibit more aggressive behavior.

      Reviewer #2 (Public Review):

      A study that furthers the molecular definition of PPGL (where prognosis is variable) and provides a wide range of sub-experiments to back up the findings. One of the key premises of the study is that identification of driver mutations in PPGL is incomplete and that compromises characterisation for prognostic purposes. This is a reasonable starting point on which to base some characterisation based on different methods. The cohort is a reasonable size, and a useful validation cohort in the form of TCGA is used. Whilst it would be resource-intensive (though plausible given the rarity of the tumour type) to perform RNA-seq on all PPGL samples in clinical practice, some potential proxies are proposed.

      We sincerely thank the reviewer for their positive assessment of our study’s rationale. We fully agree that RNA sequencing for all PPGL samples remains resource-intensive in current clinical practice, and its widespread application still faces feasibility challenges. It is precisely for this reason that, after defining transcriptional subtypes, we further focused on identifying and validating practical molecular markers and exploring their detectability at the protein level.

      In this study, we validated key markers such as ANGPT2, PCSK1N, and GPX3 using immunohistochemistry (IHC), demonstrating their ability to effectively distinguish among molecular subtypes (see Figure. 5). This provides a potential tool for the clinical translation of transcriptional subtyping, similar to the transcription factor-based subtyping in small cell lung cancer where IHC enables low-cost and rapid molecular classification.

      It should be noted that the subtyping performance of these markers has so far been preliminarily validated only in our internal cohort of 87 PPGL samples. We agree with the reviewer that largerscale, multi-center prospective studies are needed in the future to further establish the reliability and prognostic value of these markers in clinical practice.

      The performance of some of the proxy markers for transcriptional subtype is not presented.

      We agree with your comment regarding the need to further evaluate the performance of proxy markers for transcriptional subtyping. In our study, we have in fact taken this point into full consideration. To translate the transcriptional subtypes into a clinically applicable classification tool, we employed a linear regression model to compare the effect values (β values) of candidate marker genes across subtypes (Supplementary Figure. 1D-F). Genes with the most significant β values and statistical differences were selected as representative markers for each subtype.

      Ultimately, we identified ANGPT2, PCSK1N, and GPX3—each significantly overexpressed in subtypes C1, C2, and C3, respectively, and exhibiting the most pronounced β values—as robust marker genes for these subtypes (Figure. 5A and Supplementary Figure. 1D-F). These results support the utility of these markers in subtype classification and have been thoroughly validated in our analysis.

      There is limited prognostic information available.

      Thank you for your valuable suggestion. In this exploratory revision, we present the available prognostic signal in Figure. 5C. Given the current event numbers and follow-up time, we intentionally limited inference. We are continuing longitudinal follow-up of the PPGL cohort and will periodically update and report mature time-to-event analyses in subsequent work.

      Reviewer #1 (Recommendations for the authors):

      There is no deposition reference for the RNAseq transcriptomics data. Have the data been deposited in a suitable data repository?

      Thank you for your valuable suggestion. We have updated the Data availability section (lines 508–511) to clarify that the bulk-tissue RNA-seq datasets generated in this study are available from the corresponding author upon reasonable request.

      In the snRNAseq analysis of existing published data, clarify how cells were labelled as "C1", "C2", "C3", alongside cells labelled by cell type (the latter is described briefly in the Methods).

      Thank you for your valuable suggestion. In response to the reviewer’s request for further clarification on “how previously published single-nuclei data were assigned to the newly defined C1-C3 subtypes,” we have provided additional methodological details in the revised manuscript (lines 103-109). Specifically, we aggregated the single-nucleus RNA-seq data to the sample level by summing gene counts across nuclei to generate pseudo-bulk expression profiles. These profiles were then normalized for library size, log-transformed (log1p), and z-scaled across samples. Using genesets scores derived from our earlier WGCNA analysis of PPGLs, we defined transcriptional subtypes within the Magnus cohort (Supplementary Figure. 1C). We further analyzed the single-nucleus data by classifying malignant (chromaffin) nuclei as C1, C2, or C3 based on their subtype scores, while non-malignant nuclei (including immune, stromal, endothelial, and others) were annotated using canonical cell-type markers (Figure. 4A).

      Package versions should be included (e.g., CellChat, monocle2).

      We greatly appreciate your comments and have now added a dedicated “Software and versions” subsection in Methods. Specifically, we report Seurat (v4.4.0), sctransform (v0.4.2), CellChat (v2.2.0), monocle (v2.36.0; monocle2), pheatmap (v1.0.13), clusterProfiler (v4.16.0), survival (v3.8.3), and ggplot2 (v3.5.2) (lines 514-516). We also corrected a typographical error (“mafools” → “maftools”) (lines 463).

      Reviewer #2 (Recommendations for the authors):

      It would be helpful to provide a little more detail on the clinical composition of the cohort (e.g., phaeo vs paraganglioma, age, etc.) in the text, acknowledging that this is done in Figure 1.

      Thank you for your valuable suggestion. In the revision, we added Table S1 that provides a detailed summary of the clinical composition of the PPGL cohort. Specifically, we report the numbers and proportions (Supplementary Figure. 1A) of pheochromocytoma (PC) versus paraganglioma (PG), further subclassifying PG into head and neck (HN-PG), retroperitoneal (RPPG), and bladder (BC-PG).

      How many of each transcriptional subtype had driver mutations (germline or somatic)? This is included in the figures but would be worth mentioning in the text. Presumably, some of these may be present but not detected (e.g., non-coding variants), and this should be commented on. It is feasible that if methods to detect all the relevant genomic markers were improved, then the rate of tumours without driver mutations would be less and their prognostic utility would be more comprehensive.

      Thank you for your valuable suggestion. In the revision (lines 113–116), we now report the prevalence of driver mutations (germline or somatic) overall and by transcriptional subtype. We analyzed variant data across 84 PPGL-relevant genes from 179 tumors in the TCGA cohort and 30 tumors in Magnus’s cohort (Fig. 2A; Table S2). High-frequency genes were consistent with known biology—C1 enriched for [e.g., VHL/SDHB], C2 for [e.g., RET/HRAS], and C3 for [e.g., SDHA/SDHD]. We also note that a subset of tumors lacked an identifiable driver, which likely reflects current assay limitations (e.g., non-coding or structural variants, subclonality, and purity effects). Broader genomic profiling (deep WGS/long-read, RNA fusion, methylation) would be expected to reduce the “driver-negative” fraction and further enhance the prognostic utility of these classifiers.

      ANGPT2 provides a reasonable predictive capacity for the C1 subtype as defined by the ROC AUC. What was the performance of the PCSK1N and GPX3 as markers of the other subtypes?

      We agree with your comment regarding the need to further evaluate the performance of proxy markers for transcriptional subtyping, and we have supplemented the analysis with ROC and AUC values for two additional parameters (Author response image 1 , see below). Furthermore, in our study, we have in fact taken this point into full consideration. To translate the transcriptional subtypes into a clinically applicable classification tool, we employed a linear regression model to compare the effect values (β values) of candidate marker genes across subtypes (Supplementary Figure. 1D-F). Genes with the most significant β values and statistical differences were selected as representative markers for each subtype.

      Ultimately, we identified ANGPT2, PCSK1N, and GPX3—each significantly overexpressed in subtypes C1, C2, and C3, respectively, and exhibiting the most pronounced β values—as robust marker genes for these subtypes (Figure. 5A and Supplementary Figure. 1D-F). These results support the utility of these markers in subtype classification and have been thoroughly validated in our analysis.

      Author response image 1.

      Extended Data Figure A-B. (A) The ROC curve illustrates the diagnostic ability to distinguish PCSK1N expression in PPGLs, specifically differentiating subtype C2 from non-C2 subtypes. The red dot indicates the point with the highest sensitivity (93.1%) and specificity (82.8%). AUC, the area under the curve. (B) The ROC curve illustrates the diagnostic ability to distinguish GPX3 expression in PPGLs, specifically differentiating subtype C3 from non-C3 subtypes. The red dot indicates the point with the highest sensitivity (83.0%) and specificity (58.8%). AUC, the area under the curve.

      In the discussion, I think it would be valuable to summarise existing clinical/molecular predictors in PPGL and, acknowledging that their performance may be limited, compare them to the potential of these novel classifiers.

      Thank you for your valuable suggestion. We have added a concise overview of established clinical and molecular predictors in PPGL and compared them with the potential of our transcriptional classifiers. The new paragraph (Discussion, lines 315–338) now reads:

      “Compared to existing clinical and molecular predictors, risk assessment in PPGL has long relied on the following indicators: clinicopathological features (e.g., tumor size, non-adrenal origin, specific secretory phenotype, Ki-67 index), histopathological scoring systems (such as PASS/GAPP), and certain genetic alterations (including high-risk markers like SDHB inactivation mutations, as well as susceptibility gene mutations in ATRX, TERT promoter, MAML3, VHL, NF1, among others). Although these metrics are highly actionable in clinical practice, they exhibit several limitations: first, current molecular markers only cover a subset of patients, and technical constraints hinder the detection of many potentially significant variants (e.g., non-coding mutations), thereby compromising the comprehensiveness of prognostic evaluation; second, histopathological scoring is susceptible to interobserver variability; furthermore, the lack of standardized detection and evaluation protocols across institutions limits the comparability and generalizability of results. Our transcriptomic classification system—comprising C1 (pseudohypoxic/angiogenic signature), C2 (kinase-signaling signature), and C3 (SDHx-related signature)—provides a complementary approach to PPGL risk assessment. These subtypes reflect distinct biological backgrounds tied to specific genetic alterations and can be approximated by measuring the expression of individual genes (e.g., ANGPT2, PCSK1N, or GPX3). This study demonstrates that the classifier offers three major advantages: first, it accurately distinguishes subtypes with coherent biological features; second, it retains significant predictive value even after adjusting for clinical covariates; third, it can be implemented using readily available assays such as immunohistochemistry. These findings suggest that integrating transcriptomic subtyping with conventional clinical markers may offer a more comprehensive and generalizable risk stratification framework. However, this strategy would require validation through multi-center prospective studies and standardization of detection protocols.”

      A little more explanation of the principles behind WGCNA would be useful in the methods.

      We are grateful for your comments. We have expanded the Methods to briefly explain the principles of WGCNA (lines 426-454). In short, WGCNA constructs a weighted coexpression network from normalized gene expression, identifies modules of tightly co-expressed genes, summarizes each module by its eigengene (the first principal component), and then correlates module eigengenes with phenotypes (e.g., transcriptional subtypes) to highlight biologically meaningful gene sets and candidate hub genes. We now specify our preprocessing, choice of softthresholding power to approximate scale-free topology, module detection/merging criteria, and the statistics used for module–trait association and downstream gene-set scoring. 

      On line 234, I think the figure should be 5C?

      We greatly appreciate your comments and Correct to Figure 5C.

  5. keywords.nyupress.org keywords.nyupress.org
    1. Outside of the arena of national policy, perhaps the most influential nonmilitary use of “war” in recent decades has been in what came to be called the culture wars. Most prominent in the 1980s and 1990s, the phrase “culture wars

      The section on “culture wars” shows how the word “war” doesn’t just describe conflict — it produces it. Jeffords connects the term to debates over education, art, and politics, which reminds me of how the “celebrity” essay explored power structures and social influence. What inspires me here is the method: Jeffords uses history, politics, and examples from public controversies to show how a keyword reflects deeper tensions in American culture. For my research project, I can follow this model by showing how my own keyword shapes debates, identities, or values today.

    2. The second half of the twentieth century also saw the increasing use of “war” to refer to more than just direct military encounters, thus shifting the emphasis from the first definition of “war” (conflicts among nations) to the second (conditions of antagonism). Dwight D. Eisenhower, who served in World War II as general of the US Army, in his last speech to the nation before stepping down as president, acknowledged that the post–World War II military environment would be different from any in the past because of the emergence of a permanent, economically profitable armaments industry, or “military-industrial complex

      Jeffords shows how the meaning of “war” expands in the 20th century to describe social problems — the “war on poverty,” “war on drugs,” and “war on terror.” This reminds me of the “celebrity” essay because both authors explore how language shapes public attitudes. By calling these issues “wars,” politicians create urgency, fear, and conflict even when the situation is not military at all. This metaphorical framing is something I want to use in my own research: analyzing not just what a word means, but what it does in society.

    3. Tug-of-war, Cold War, war on terror, World War II, “Make love, not war,” WarGames, War on Poverty, prisoner of war, War of the Worlds, Iraq War, war on drugs, antiwar, “All’s fair in love and war”—these are just a few of the myriad ways that the word “war” is used every day in the English language. It is difficult today to turn on a television, check a news feed, or go to a movie theater anywhere in the United States without encountering a verbal or a visual reference to war. Whether through reports of wars around the globe; declarations of “war on” a variety of social issues, from AIDS to poverty to drugs to crime; or descriptions of sporting events (“throwing a bomb,” “blitzing,” “sudden death”)—references to war permeate US culture.

      Jeffords’s opening reminds me of last week’s “celebrity” essay because both authors start by showing how a single word appears constantly in everyday life. Just like “celebrity” was more complicated than it first seemed, “war” also carries multiple meanings beyond literal combat. I like how Jeffords uses examples from sports, politics, and media to show how the term shapes how Americans think about conflict. This approach gives me ideas for my own keyword project — especially the strategy of starting with common uses before digging into deeper cultural meanings.

    4. But Johnson’s deployment of the term solidified the use of an explicit vocabulary of war to refer to a broad social issue. Since that time, we have had wars on “drugs” and “cancer” announced by President Nixon in 1971, the “war against crime” declared by Bill Clinton in June 1994, and, more recently, George W. Bush’s “war on terror.

      calling a problem a “war” makes it seem like something we have to fight with force. But issues like poverty or drugs don’t have armies you can’t defeat them like enemies. Using war language can make these problems seem scarier and make people think extreme actions are needed.

    5. Dwight D. Eisenhower, who served in World War II as general of the US Army, in his last speech to the nation before stepping down as president, acknowledged that the post–World War II military environment would be different from any in the past because of the emergence of a permanent, economically profitable armaments industry, or “military-industrial complex,

      I realized that once the country spends a lot of money on weapons, it becomes harder to stop being at war. It means war can become a business. His warning helps explain why the U.S. often seems to be preparing for or involved in conflicts.

    6. the word “war” is used every day in the English language. It is difficult today to turn on a television, check a news feed, or go to a movie theater anywhere in the United States without encountering a verbal or a visual reference to war.

      This stood out to me because it shows that we use war words all the time without noticing. When we say things like “battle,” “attack,” or “enemy,” it makes normal problems sound like fights. That can make people see the world as more dangerous or divided than it really is.

    1. Primary sources are original documents, data, or images: the law code of the Le Dynasty in Vietnam, the letters of Kurt Vonnegut, data gathered from an experiment on color perception, an interview, or Farm Service Administration photographs from the 1930s.[3] Secondary sources are produced by analyzing primary sources. They include news articles, scholarly articles, reviews of films or art exhibitions, documentary films, and other pieces that have some descriptive or analytical purpose. Some things may be primary sources in one context but secondary sources in another.

      This section clarifies something many students, including me, often misunderstand: the difference between primary and secondary sources depends on how the source is used. I found the example about news articles especially helpful. A news article can function as a secondary source when it reports or interprets events, but it becomes a primary source if we use it as raw data for patterns or frequency. This made me realize that choosing sources is not just about finding information, but about understanding the purpose each source serves in our research.

    2. Academic papers are essentially reports that scholars write to their peers—present and future—about what they’ve done in their research, what they’ve found, and why they think it’s important. Thus, in a lot of fields they often have a structure reminiscent of the lab reports you’ve written for science classes:

      The explanation of a scholarly article’s structure (abstract, introduction, literature review, methods, results, conclusion) gave me a practical strategy for reading academic work. Before, I used to feel overwhelmed and tried to read everything from top to bottom. Now I understand that I can use the abstract to check relevance quickly and focus on the introduction and conclusion to understand the main argument. I don’t need to understand every technical detail. This approach makes academic sources feel much more manageable and less intimidating.

    3. Some sources are better than others You probably know by now that if you cite Wikipedia as an authoritative source, the wrath of your professor shall be visited upon you. Why is it that even the most informative Wikipedia articles are still often considered illegitimate? And what are good sources to use? The table below summarizes types of secondary sources in four tiers.

      because it explains why professors strongly prefer peer-reviewed (Tier 1) sources. These sources are evaluated by experts and therefore provide the strongest and most credible evidence. I like how the chapter also acknowledges that Tier 4 sources, including Wikipedia, still have a role in the early research process—mainly for generating keywords or identifying important names and topics. This helps me understand that good research doesn’t mean avoiding Google entirely, but knowing how to move from lower-tier sources to higher-quality academic ones.

    4. Scholarly journals use a peer-review process to decide which articles merit publication. First, hopeful authors send their article manuscript to the journal editor, a role filled by some prominent scholar in the field. The editor reads over the manuscript and decides whether it seems worthy of peer-review. If it’s outside the interests of the journal or is clearly inadequate, the editor will reject it outright.

      This section explains how academic articles get checked by experts before being published important for understanding why professors trust them.Peer-review is like a super intense homework check before an expert can publish an article its basically going through a job interview process to get published.

    5. A step below the well-developed reports and feature articles that make up Tier 2 are the short tidbits that one finds in newspapers and magazines or credible websites. How short is a short news article? Usually, they’re just a couple paragraphs or less, and they’re often reporting on just one thing: an event, an interesting research finding, or a policy change.

      This section explains which sources are the most trustworthy in research (Tier 1) and which are least trusted for citation (Tier 4). Freshmen need this to avoid using weak sources in their papers. From Tier 1 = best (used by experts; checked carefully). Tier 2 = still good from places like government agencies or major newspapers. Tier 3 = short news snippets not bad, but not great. Tier 4 = opinions or websites where anyone can write anything like Wikipedia,You can read Tier 4, but you shouldn’t use it in a serious school paper.

    6. Scholarly articles appear in academic journals, which are published multiple times a year in order to share the latest research findings with scholars in the field. They’re usually sponsored by some academic society.

      College students need to understand this difference to do proper research. It's a core concept used in almost every college paper.

    1. In Mr. Trevers's case, a wound that doesn't heal is said to be a sign thatpoints toward diabetes and atherosclerosis of the leg arteries. But this isn't nec-essarily so: this is a meaning that has been attributed. Such attributions have ahistory, and they are culturally specific

      Okay, but there is likeliness, that's how predictions work?

    2. As a complement to this, social scientists have made it their trade to listen forfeelings when they interview patients. And they have persistently and severelycriticized doctors for neglecting psychosocial matters, for being ever so con-cerned about keeping wounds clean while they hardly ever ask their patientswhat being wounded means to them.

      It's slowly becoming less the case, though.

    Annotators

    1. critical pedagogy is being discussed as a potential component of urban school re-form. Again, educators and researchers look to critical pedagogy as they con-sider ways to motivate students, to develop literacies and numeracies of power, and to engage students and their communities in the struggle for edu-cational justice

      Since no definition is written here, the first word or definition that came to my mind is something really negative because I thought it might be an educational form that pushes students to their limits by criticizing them most of the time. However, I think it does not make sense because the article says that there is an increasing trend of using such educational system. so I guess that it is a way to help student develop their critical thinking ability and critical analysis or judging something critically (since the article mentioned that it helps student too fight for educational Justice) I’m very interested to explore how this can be put into a classroom environment.

    1. All good knights held it after, saw: Yea, sirs, by cursed unknightly outrage; though You, Gauwaine, held his word without a flaw, This Mellyagraunce saw blood upon my bed: Whose blood then pray you? is there any law To make a queen say why some spots of red

      This refers to the mannerisms and politeness that men in the Victorian era must uphold towards women. Victorian men must be pleasant and pleased women; however, at this scene, Morris uses Sir Guawaine and Mellyagraunce as a contrast to that ideal. https://www.jstor.org/stable/10.1086/427127

    2. So, ever must I dress me to the fight,

      In this line, the imagery suggest that Guenevere is aware of beauty and deliberately employs it to seduce and influence the knights that are present in the room, treating it as a strategic advantage. This action goes against the ideals of Victorian standards of beauty and virtue.

    3. Men are forgetting as I speak to you; By her head sever’d in that awful drouth Of pity that drew Agravaine’s fell blow,

      Guenevere's accusation suggest that Sir Gauwaine cannot claim moral superiority, as his own family history is fraught with similar transgression. This highlights the recurring theme of hypocrisy and flawed virtue among Arthurian knights. Furthermore, Guenevere is referring to the affair of Sir Gauwaine's mother, Morgause. She was killed by her son, Gaheris, when he discovered her relationship with Sir Lamorak. https://kingarthursknights.com/arthurian-characters/morgause/

    4. Though still she stood right up, and never shrunk, But spoke on bravely, glorious lady fair!

      As Antony H. Harrison discusses in "Arthurian Poetry and Medievalism," the narrator views Guenevere as both the hero and victim. At these lines, Guenevere's monologue illustrates her bravely against the accusation from Sir Gauwaine as her only support at the moment is herself.

    5. God wot I ought to say, I have done ill, And pray you all forgiveness heartily! Because you must be right, such great lords; still

      In Carole G. Silver's article, "' The Defence of Guenevere': A Further Interpretation, she discusses how at these specific lines, Guenevere is "sarcastically flattering her audience" (698). However, Guenevere may also be indicating to the lords that she has sinned and is asking for forgiveness for the crime she committed. https://www.jstor.org/stable/450041

    6. BUT, knowing now that they would have her speak,

      (https://youtu.be/91t7U1SjCTU)

      In this YouTube video, “The Defence of Guenevere” is read by a female narrator whose soft, but firm tone highlights Guenevere’s resilience during her defense, making Guenevere appear more assertive. The narrator’s voice demonstrates Guenevere’s emotional state more vividly and convincingly, allowing listeners to better empathize with her defense against Sir. Gauwaine and other knights.

    1. Each time you touch this symbol, tell yourself, ‘I can relax now.’ If your thoughts wander during the creation process, don’t blame yourself; guide your attention back to the tactile feel of the materials.

      Tactile - transferal of ruminations to the object.

    1. If your birth background is listed as “conflict zone” or “rural community” with no educational resources, then you cannot draw the education card.

      or a different form of education perhaps ("informal education")

    1. Finally, you can choose to keep the final artwork, and you can share it with your peers if you wish.

      Perhaps you could add the links to the R&D you did here so that learners can follow up on the same sources you used to create this workshop?

  6. milenio-nudos.github.io milenio-nudos.github.io
    1. Considering the previous statements, The first hypothesis is of this study is H1 It is possible to identify two latent dimensions of digital self-efficacy (general and specialized) based on related batteries and indicators included in large-scale assessments such as PISA and ICILS.

      ehhh ... y argumentar algo sobre invarianza??

    2. The literature has shown that there are significant gender differences depending on the type of dimension of DSE (Gebhardt et al., 2019), so it is also necessary to test the stability of the scales by gender. The third hypothesis is: H3 The bi-dimensional measurement model of digital self-efficacy is equivalent between girls and boys

      esto requiere mucho más desarrollo

    3. Despite distinct approach, the two studies contain tasks that can be categorized into a more general dimension and a specialized one. PISA and ICILS share items that focus on tasks with a low degree of technical complexity, such as searching for information online and/or editing text for a school subject, but both studies also include items that refer to the creation and maintenance of web pages or programming software.

      esto no debería enfatizar que es posible hacer la distinción en PISA? (en ICILS viene por diseño)

    4. Studies focusing on capabilities usually emphasize the magnitude of the task, i.e., its degree of difficulty or complexity, and the linear achievement of the masterization process. By contrast, studies focused on attitudinal

      no queda clara la conexión con lo anterior: task are capabilities?

    5. The DigComp describes digital competences in terms of general actions, such as protecting devices or managing data, that can be applied to a heterogeneous group of individuals and are independent of specific digital systems. Most DSE s

      acá no se entiende qué tiene que ver DigComp con DSE

    1. eLife Assessment

      This important series of studies provides converging results from complementary neuroimaging and behavioral experiments to identify human brain regions involved in representing regular geometric shapes and their core features. Geometric shape concepts are present across diverse human cultures and possibly involved in human capabilities such as numerical cognition and mathematical reasoning. Identifying the brain networks involved in geometric shape representation is of broad interest to researchers studying human visual perception, reasoning, and cognition. The evidence supporting the presence of representation of geometric shape regularity in dorsal parietal and prefrontal cortex is solid, but does not directly demonstrate that these circuits overlap with those involved in mathematical reasoning. Furthermore, the links to defining features of geometric objects and with mathematical and symbolic reasoning would benefit from stronger evidence from more fine-tuned experimental tasks varying the stimuli and experience.

    2. Reviewer #1 (Public review):

      This paper examines how geometric regularities in abstract shapes (e.g., parallelograms, kites) are perceived and processed in the human brain. The manuscript contains multimodal data (behavior, fMRI, MEG) from adults and additional fMRI data from 6-year-old children. The key findings show that (1) processing geometric shapes lead to reduced activity in ventral areas in comparison to complex stimuli and increased activity in intraparietal and inferior temporal regions, (2) the degree of geometric regularity modulates activity in intraparietal and inferior temporal regions, (3) similarity in neural representation of geometric shapes can be captured early by using CNN models and later by models of geometric regularity. In addition to these novel findings, the paper also includes a replication of behavioral data, showing that the perceptual similarity structure amongst the geometric stimuli used can be explained by a combination of visual similarities (as indexed by feedforward CNN model of ventral visual pathway) and geometric features. The paper comes with openly accessible code in a well-documented GitHub repository and the data will be published with the paper on OpenNeuro.

      In the revised version of this manuscript, the authors clarified certain aspects of the task design, added critical detail to the description of the methods, and updated the figures to show unsmoothed data and variability across participants. Importantly, the authors thoroughly discussed potential task effects (for the fMRI data only) and added additional analyses that indicate that the effects are unlikely to be driven by linguistic labels/name availability of the stimuli.

      Comments on the revision:

      Thank you for carefully addressing all my concerns and especially for clarifying the task design.

    3. Reviewer #2 (Public review):

      Summary

      The current study seeks to understand the neural mechanisms underlying geometric reasoning. Using fMRI with both children and adults, the authors found that contrasting simple geometric shapes with naturalistic images (faces, tools, houses) led to responses in the dorsal visual stream, rather than ventral regions that are generally thought to represent shape properties. The author's followed up on this result using computational modeling and MEG to show that geometric properties explain distinct variance in the neural response than what is captured by a CNN.

      Strengths

      These findings contribute much-needed neural and developmental data to the ongoing debate regarding shape processing in the brain and offer additional insights into why CNNs may have difficulty with shape processing. The motivation and discussion for the study is appropriately measured, and I appreciate the authors' use of multiple populations, neuroimaging modalities, and computational models in explore this question.

      Weaknesses

      The presence of activation in aIPS led the authors to interpret their results to mean that geometric reasoning draws on the same processes as mathematical thinking. However, there is only weak and indirect evidence in the current study that geometric reasoning, as its tested here, draws on the same circuits as math.

    4. Reviewer #3 (Public review):

      Summary:

      The authors report converging evidence from behavioral studies as well as several brain-imaging techniques that geometric figures, notably quadrilaterals, are processed differently in visual (lower activation) and spatial (greater) areas of the human brain than representative figures. Comparison of mathematical models to fit activity for geometric figures shows the best fit for abstract geometric features like parallelism and symmetry. The brain areas active for geometric figures are also active in processing mathematical concepts even in blind mathematicians, linking geometric shapes to abstract math concepts. The effects are stronger in adults than in 6-year-old Western children. Similar phenomena do not appear in great apes, suggesting that this is uniquely human and developmental.

      Strengths:

      Multiple converging techniques of brain imaging and testing of mathematical models showing special status of perception of abstract forms. Careful reasoning at every step of research and presentation of research, anticipating and addressing possible reservations. Connecting these findings to other findings, brain, behavior, and historical/anthropological to suggest broad and important fundamental connections between abstract visual-spatial forms and mathematical reasoning.

      Weaknesses:

      I have reservations of the authors' use of "symbolic." They seem to interpret "symbolic" as relying on "discrete, exact, rule-based features." Words are generally considered to symbolic (that is their major function), yet words do not meet those criteria. Depictions of objects can be regarded as symbolic because they represent real objects, they are not the same as the object (as Magritte observed). If so then perhaps depictions of quadrilaterals are also symbolic but then they do not differ from depictions of objects on that quality. Relatedly, calling abstract or generalized representations of forms a distinct "language of thought" doesn't seem supportable by the current findings. Minimally, a language has elements that are combined more or less according to rules. The authors present evidence for geometric forms as elements but nowhere is there evidence for combining them into meaningful strings.

      Further thoughts

      Incidentally, there have been many attempts at constructing visual languages from visual elements combined by rules, that is, mapping meaning to depictions. Many written languages like Egyptian hieroglyphics or Mayan or Chinese, began that way; there are current attempts using emoji. Apparently, mapping sound to discrete letters, alphabets, is more efficient and was invented once but spread. That said, for restricted domains like maps, circuit diagrams, networks, chemical interactions, mathematics, and more, visual "languages" work quite well.

      The findings are striking and as such invite speculation about their meaning and limitations. The images of real objects seem to be interpreted as representations of 3D objects as they activate the same visual areas as real objects. By contrast, the images of 2D geometric forms are not interpreted as representations of real objects but rather seemingly as 2D abstractions. It would be instructive to investigate stimuli that are on a continuum from representational to geometric, e. g., real objects that have simple geometric forms like table tops or boxes under various projections or balls or buildings that are rectangular or triangular. Objects differ from geometric forms in many ways: 3D rather than 2D, more complicated shapes; internal features as well as outlines. The geometric figures used are flat, 2-D, but much geometry is 3-D (e. g. cubes) with similar abstract features. The feature space of geometry is more than parallelism and symmetry; angles are important for example. Listing and testing features would be fascinating.

      Can we say that mathematical thinking began with the regularities of shapes or with counting, or both? External representations of counting go far back into prehistory; tallies are frequent and wide-spread. Infants are sensitive to number across domains as are other primates (and perhaps other species). Finding overlapping brain areas for geometric forms and number is intriguing but doesn't show how they are related.

      Categories are established in part by contrast categories; are quadrilaterals and triangles and circles different categories? As for quadrilaterals, the authors say some are "completely irregular." Not really; they are still quadrilaterals, if atypical. See Eleanor Rosch's insightful work on (visual) categories. One wonders about distinguishing squashed quadrilaterals from squashed triangles.

      What in human experience but not the experience of close primates would drive the abstraction of these geometric properties? It's easy to make a case for elaborate brain processes for recognizing and distinguishing things in the world, shared by many species, but the case for brain areas sensitive to abstracting geometric figures is harder. The fact that these areas are active in blind mathematicians and that they are parietal areas suggest that what is important is spatial far more than visual. Could these geometric figures and their abstract properties be connected in some way to behavior, perhaps with fabrication, construction or use of objects? Or with other interactions with complex objects and environments where symmetry and parallelism (and angles and curvature--and weight and size) would be important? Manual dexterity and fabrication also distinguish humans from great apes (quantitatively not qualitatively) and action drives both visual and spatial representations of objects and spaces in the brain. I certainly wouldn't expect the authors to add research to this already packed paper, but raising some of the conceptual issues would contribute to the significance of the paper.

    5. Author response:

      The following is the authors’ response to the original reviews

      Reviewer #1 (Public review):

      Weakness:

      I wonder how task difficulty and linguistic labels interact with the current findings. Based on the behavioral data, shapes with more geometric regularities are easier to detect when surrounded by other shapes. Do shape labels that are readily available (e.g., "square") help in making accurate and speedy decisions? Can the sensitivity to geometric regularity in intraparietal and inferior temporal regions be attributed to differences in task difficulty? Similarly, are the MEG oddball detection effects that are modulated by geometric regularity also affected by task difficulty?

      We see two aspects to the reviewer’s remarks.

      (1) Names for shapes.

      On the one hand, is the question of the impact of whether certain shapes have names and others do not in our task. The work presented here is not designed to specifically test the effect of formal western education; however, in previous work (Sablé-Meyer et al., 2021), we noted that the geometric regularity effect remains present even for shapes that do not have specific names, and even in participants who do not have names for them. Thus, we replicated our main effects with both preschoolers and adults that did not attend formal western education and found that our geometric feature model remained predictive of their behavior; we refer the reader to this previous paper for an extensive discussion of the possible role of linguistic labels, and the impact of the statistics of the environment on task performance.  

      What is more, in our behavior experiments we can discard data from any shape that is has a name in English and run our model comparison again. Doing so diminished the effect size of the geometric feature model, but it remained predictive of human behavior: indeed, if we removed all shapes but kite, rightKite, rustedHinge, hinge and random (i.e., more than half of our data, and shapes for which we came up with names but there are no established names), we nevertheless find that both models significantly correlate with human behavior—see plot in Author response image 1, equivalent of our Fig. 1E with the remaining shapes.

      Author response image 1.

      An identical analysis on the MEG leads to two noisy but significant clusters (CNN: 64.0ms to 172.0ms; then 192.0ms to 296.0ms; both p<.001: Geometric Features: 312.0ms to 364.0ms with p=.008). We have improved our manuscript thanks to the reviewer’s observation by adding a figure with the new behavior analysis to the supplementary figures and in the result section of the behavior task. We now refer to these analysis where appropriate:

      (intro) “The effect appeared as a human universal, present in preschoolers, first-graders, and adults without access to formal western math education (the Himba from Namibia), and thus seemingly independent of education and of the existence of linguistic labels for regular shapes.”

      (behavior results) “Finally, to separate the effect of name availability and geometric features on behavior, we replicated our analysis after removing the square, rectangle, trapezoids, rhombus and parallelogram from our data (Fig. S5D). This left us with five shapes, and an RDM with 10 entries, When regressing it in a GLM with our two models, we find that both models are still significant predictors (p<.001). The effect size of the geometric feature model is greatly reduced, yet remained significantly higher than that of the neural network model (p<.001).”

      (meg results) “This analysis yielded similar clusters when performed on a subset of shapes that do not have an obvious name in English, as was the case for the behavior analysis (CNN Encoding: 64.0ms to 172.0ms; then 192.0ms to 296.0ms; both p<.001: Geometric Features: 312.0ms to 364.0ms with p=.008).”

      (discussion, end of behavior section) “Previously, we only found such a significant mixture of predictors in uneducated humans (whether French preschoolers or adults from the Himba community, mitigating the possible impact of explicit western education, linguistic labels, and statistics of the environment on geometric shape representation) (Sablé-Meyer et al., 2021).”

      Perhaps the referee’s point can also be reversed: we provide a normative theory of geometric shape complexity which has the potential to explain why certain shapes have names: instead of seeing shape names as the cause of their simpler mental representation, we suggest that the converse could occur, i.e. the simpler shapes are the ones that are given names.

      (2) Task difficulty

      On the other hand is the question of whether our effect is driven by task difficulty. First, we would like to point out that this point could apply to the fMRI task, which asks for an explicit detection of deviants, but does not apply to the MEG experiment. In MEG, participants passively looked at sequences of shapes which, for a given block, comprising many instances of a fixed standard shape and rare deviants–even if they notice deviants, they have no task related to them. Yet two independent findings validated the geometric features model: there was a large effect of geometric regularity on the MEG response to deviants, and the MEG dissimilarity matrix between standard shapes correlated with a model based on geometric features, better than with a model based on CNNs. While the response to rare deviants might perhaps be attributed to “difficulty” (assuming that, in spite of the absence of an explicit task, participants try to spot the deviants and find this self-imposed task more difficult in runs with less regular shapes), it seems very hard to explain the representational similarity analysis (RSA) findings based on difficulty. Indeed, what motivated us to use RSA analysis in both fMRI and MEG was to stop relying on the response to deviants, and use solely the data from standard or “reference” shapes, and model their neural response with theory-derived regressors.

      We have updated the manuscript in several places to make our view on these points clearer:

      (experiment 4) “This design allowed us to study the neural mechanisms of the geometric regularity effect without confounding effects of task, task difficulty, or eye movements.”

      (figure 4, legend) “(A) Task structure: participants passively watch a constant stream of geometric shapes, one per second (presentation time 800ms). The stimuli are presented in blocks of 30 identical shapes up to scaling and rotation, with 4 occasional deviant shape. Participants do not have a task to perform beside fixating.”

      Reviewer #2 (Public review):

      Weakness:

      Given that the primary take away from this study is that geometric shape information is found in the dorsal stream, rather than the ventral stream there is very little there is very little discussion of prior work in this area (for reviews, see Freud et al., 2016; Orban, 2011; Xu, 2018). Indeed, there is extensive evidence of shape processing in the dorsal pathway in human adults (Freud, Culham, et al., 2017; Konen & Kastner, 2008; Romei et al., 2011), children (Freud et al., 2019), patients (Freud, Ganel, et al., 2017), and monkeys (Janssen et al., 2008; Sereno & Maunsell, 1998; Van Dromme et al., 2016), as well as the similarity between models and dorsal shape representations (Ayzenberg & Behrmann, 2022; Han & Sereno, 2022).

      We thank the reviewer for this opportunity to clarify our writing. We want to use this opportunity to highlight that our primary finding is not about whether the shapes of objects or animals (in general) are processed in the ventral versus or the dorsal pathway, but rather about the much more restricted domain of geometric shapes such as squares and triangles. We propose that simple geometric shapes afford additional levels of mental representation that rely on their geometric features – on top of the typical visual processing. To the best of our knowledge, this point has not been made in the above papers.

      Still, we agree that it is useful to better link our proposal to previous ones. We have updated the discussion section titled “Two Visual Pathways” to include more specific references to the literature that have reported visual object representations in the dorsal pathway. Following another reviewer’s observation, we have also updated our analysis to better demonstrate the overlap in activation evoked by math and by geometry in the IPS, as well as include a novel comparison with independently published results.

      Overall, to address this point, we (i) show the overlap between our “geometry” contrast (shape > word+tools+houses) and our “math” contrast (number > words); (ii) we display these ROIs side by side with ROIs found in previous work (Amalric and Dehaene, 2016), and (iii) in each math-related ROIs reported in that article, we test our “geometry” (shape > word+tools+houses) contrast and find almost all of them to be significant in both population; see Fig. S5.

      Finally, within the ROIs identified with our geometry localizer, we also performed similarity analyses: for each region we extracted the betas of every voxel for every visual category, and estimated the distance (cross-validated mahalanobis) between different visual categories. In both ventral ROIs, in both populations, numbers were closer to shapes than to the other visual categories including text and Chinese characters (all p<.001). In adults, this result also holds for the right ITG (p=.021) and the left IPS (p=.014) but not the right IPS (p=.17). In children, this result did not hold in the areas.

      Naturally, overlap in brain activation does not suffice to conclude that the same computational processes are involved. We have added an explicit caveat about this point. Indeed, throughout the article,  we have been careful to frame our results in a way that is appropriate given our evidence, e.g. saying “Those areas are similar to those active during number perception, arithmetic, geometric sequences, and the processing of high-level math concepts” and “The IPS areas activated by geometric shapes overlap with those active during the comprehension of elementary as well as advanced mathematical concepts”. We have rephrased the possibly ambiguous “geometric shapes activated math- and number-related areas, particular the right aIPS.” into “geometric shapes activated areas independently found to be activated by math- and number-related tasks, in particular the right aIPS”.

      Reviewer #3 (Public review):

      Weakness:

      Perhaps the manuscript could emphasize that the areas recruited by geometric figures but not objects are spatial, with reduced processing in visual areas. It also seems important to say that the images of real objects are interpreted as representations of 3D objects, as they activate the same visual areas as real objects. By contrast, the images of geometric forms are not interpreted as representations of real objects but rather perhaps as 2D abstractions.

      This is an interesting possibility. Geometric shapes are likely to draw attention to spatial dimensions (e.g. length) and to do so in a 2D spatial frame of reference rather than the 3D representations evoked by most other objects or images. However, this possibility would require further work to be thoroughly evaluated, for instance by comparing usual 3D objects with rare instances of 2D ones (e.g. a sheet of paper, a sticker etc). In the absence of such a test, we refrained from further speculation on this point.

      The authors use the term "symbolic." That use of that term could usefully be expanded here.  

      The reviewer is right in pointing out that “symbolic” should have been more clearly defined. We now added in the introduction:

      (introduction) “[…] we sometimes refer to this model as “symbolic” because it relies on discrete, exact, rule-based features rather than continuous representations  (Sablé-Meyer et al., 2022). In this representational format, geometric shapes are postulated to be represented by symbolic expressions in a “language-of-thought”, e.g. “a square is a four-sided figure with four equal sides and four right angles” or equivalently by a computer-like program from drawing them in a Logo-like language (Sablé-Meyer et al., 2022).”

      Here, however, the present experiments do not directly probe this format of a representation. We have therefore simplified our wording and removed many of our use of the word “symbolic” in favor of the more specific “geometric features”.

      Pigeons have remarkable visual systems. According to my fallible memory, Herrnstein investigated visual categories in pigeons. They can recognize individual people from fragments of photos, among other feats. I believe pigeons failed at geometric figures and also at cartoon drawings of things they could recognize in photos. This suggests they did not interpret line drawings of objects as representations of objects.

      The comparison of geometric abilities across species is an interesting line of research. In the discussion, we briefly mention several lines of research that indicate that non-human primates do not perceive geometric shapes in the same way as we do – but for space reasons, we are reluctant to expand this section to a broader review of other more distant species. The referee is right that there is evidence of pigeons being able to perceive an invariant abstract 3D geometric shape in spite of much variation in viewpoint (Peissig et al., 2019) – but there does not seem to be evidence that they attend to geometric regularities specifically (e.g. squares versus non-squares). Also, the referee’s point bears on the somewhat different issue of whether humans and other animals may recognize the object depicted by a symbolic drawing (e.g. a sketch of a tree). Again, humans seem to be vastly superior in this domain, and research on this topic is currently ongoing in the lab. However, the point that we are making in the present work is specifically about the neural correlates of the representation of simple geometric shapes which by design were not intended to be interpretable as representations of objects.

      Categories are established in part by contrast categories; are quadrilaterals, triangles, and circles different categories?

      We are not sure how to interpret the referee’s question, since it bears on the definition of “category” (Spontaneous? After training? With what criterion?). While we are not aware of data that can unambiguously answer the reviewer’s question, categorical perception in geometric shapes can be inferred from early work investigating pop-out effects in visual search, e.g. (Treisman and Gormican, 1988): curvature appears to generate strong pop-out effects, and therefore we would expect e.g. circles to indeed be a different category than, say, triangles. Similarly, right angles, as well as parallel lines, have been found to be perceived categorically (Dillon et al., 2019).

      This suggests that indeed squares would be perceived as categorically different from triangles and circles. On the other hand, in our own previous work (Sablé-Meyer et al., 2021) we have found that the deviants that we generated from our quadrilaterals did not pop out from displays of reference quadrilaterals. Pop-out is probably not the proper criterion for defining what a “category” is, but this is the extent to which we can provide an answer to the reviewer’s question.

      It would be instructive to investigate stimuli that are on a continuum from representational to geometric, e.g., table tops or cartons under various projections, or balls or buildings that are rectangular or triangular. Building parts, inside and out. like corners. Objects differ from geometric forms in many ways: 3D rather than 2D, more complicated shapes, and internal texture. The geometric figures used are flat, 2-D, but much geometry is 3-D (e. g. cubes) with similar abstract features.

      We agree that there is a whole line of potential research here. We decided to start by focusing on the simplest set of geometric shapes that would give us enough variation in geometric regularity while being easy to match on other visual features. We agree with the reviewer that our results should hold both for more complex 2-D shapes, but also for 3-D shapes. Indeed, generative theories of shapes in higher dimensions following similar principles as ours have been devised (I. Biederman, 1987; Leyton, 2003).  We now mention this in the discussion:

      “Finally, this research should ultimately be extended to the representation of 3-dimensional geometric shapes, for which similar symbolic generative models have indeed been proposed (Irving Biederman, 1987; Leyton, 2003).”

      The feature space of geometry is more than parallelism and symmetry; angles are important, for example. Listing and testing features would be fascinating. Similarly, looking at younger or preferably non-Western children, as Western children are exposed to shapes in play at early ages.

      We agree with the reviewer on all point. While we do not list and test the different properties separately in this work, we would like to highlight that angles are part of our geometric feature model, which includes features of “right-angle” and “equal-angles” as suggested by the reviewer.

      We also agree about the importance of testing populations with limited exposure to formal training with geometric shapes. This was in fact a core aspect of a previous article of ours which tests both preschoolers, and adults with no access to formal western education – though no non-Western children (Sablé-Meyer et al., 2021). It remains a challenge to perform brain-imaging studies in non-Western populations (although see Dehaene et al., 2010; Pegado et al., 2014).

      What in human experience but not the experience of close primates would drive the abstraction of these geometric properties? It's easy to make a case for elaborate brain processes for recognizing and distinguishing things in the world, shared by many species, but the case for brain areas sensitive to processing geometric figures is harder. The fact that these areas are active in blind mathematicians and that they are parietal areas suggests that what is important is spatial far more than visual. Could these geometric figures and their abstract properties be connected in some way to behavior, perhaps with fabrication and construction as well as use? Or with other interactions with complex objects and environments where symmetry and parallelism (and angles and curvature--and weight and size) would be important? Manual dexterity and fabrication also distinguish humans from great apes (quantitatively, not qualitatively), and action drives both visual and spatial representations of objects and spaces in the brain. I certainly wouldn't expect the authors to add research to this already packed paper, but raising some of the conceptual issues would contribute to the significance of the paper.

      We refrained from speculating about this point in the previous version of the article, but share some of the reviewers’ intuitions about the underlying drive for geometric abstraction. As described in (Dehaene, 2026; Sablé-Meyer et al., 2022), our hypothesis, which isn’t tested in the present article, is that the emergence of a pervasive ability to represent aspects of the world as compact expressions in a mental “language-of-thought” is what underlies many domains of specific human competence, including some listed by the reviewer (tool construction, scene understanding) and our domain of study here, geometric shapes.

      Recommendations for the Authors:

      Reviewer #1 (Recommendations for the authors):

      Overall, I enjoyed reading this paper. It is clearly written and nicely showcases the amount of work that has gone into conducting all these experiments and analyzing the data in sophisticated ways. I also thought the figures were great, and I liked the level of organization in the GitHub repository and am looking forward to seeing the shared data on OpenNeuro. I have some specific questions I hope the authors can address.

      (1) Behavior

      - Looking at Figure 1, it seemed like most shapes are clustering together, whereas square, rectangle, and maybe rhombus and parallelogram are slightly more unique. I was wondering whether the authors could comment on the potential influence of linguistic labels. Is it possible that it is easier to discard the intruder when the shapes are readily nameable versus not?

      This is an interesting observation, but the existence of names for shapes does not suffice to explain all of our findings ; see our reply to the public comment.

      (2) fMRI

      - As mentioned in the public review, I was surprised that the authors went with an intruder task because I would imagine that performance depends on the specific combination of geometric shapes used within a trial. I assume it is much harder to find, for example, a "Right Hinge" embedded within "Hinge" stimuli than a "Right Hinge" amongst "Squares". In addition, the rotation and scaling of each individual item should affect regular shapes less than irregular shapes, creating visual dissimilarities that would presumably make the task harder. Can the authors comment on how we can be sure that the differences we pick up in the parietal areas are not related to task difficulty but are truly related to geometric shape regularities?

      Again, please see our public review response for a larger discussion of the impact of task difficulty. There are two aspects to answering this question.

      First, the task is not as the reviewer describes: the intruder task is to find a deviant shape within several slightly rotated and scaled versions of the regular shape it came from. During brain imaging, we did not ask participants to find an exemplar of one of our reference shape amidst copies of another, but rather a deviant version of one shape against copies of its reference version. We only used this intruder task with all pairs of shapes to generate the behavioral RSA matrix.

      Second, we agree that some of the fMRI effect may stem from task difficulty, and this motivated our use of RSA analysis in fMRI, and a passive MEG task. RSA results cannot be explained by task difficulty.

      Overall, we have tried to make the limitations of the fMRI design, and the motivation for turning to passive presentation in MEG, clearer by stating the issues more clearly when we introduce experiment 4:

      “The temporal resolution of fMRI does not allow to track the dynamic of mental representations over time. Furthermore, the previous fMRI experiment suffered from several limitations. First, we studied six quadrilaterals only, compared to 11 in our previous behavioral work. Second, we used an explicit intruder detection, which implies that the geometric regularity effect was correlated with task difficulty, and we cannot exclude that this factor alone explains some of the activations in figure 3C (although it is much less clear how task difficulty alone would explain the RSA results in figure 3D). Third, the long display duration, which was necessary for good task performance especially in children, afforded the possibility of eye movements, which were not monitored inside the 3T scanner and again could have affected the activations in figure 3C.”

      - How far in the periphery were the stimuli presented? Was eye-tracking data collected for the intruder task? Similar to the point above, I would imagine that a harder trial would result in more eye movements to find the intruder, which could drive some of the differences observed here.

      A 1-degree bar was added to Figure 3A, which faithfully illustrates how the stimuli were presented in fMRI. Eye-tracking data was not collected during fMRI. Although the participants were explicitly instructed to fixate at the center of the screen and avoid eye movements, we fully agree with the referee that we cannot exclude that eye movements were present, perhaps more so for more difficult displays, and would therefore have contributed to the observed fMRI activations in experiment 3 (figure 3C). We now mention this limitation explicity at the end of experiment 3. However, crucially, this potential problem cannot apply to the MEG data. During the MEG task, the stimuli were presented one by one at the center of screen, without any explicit task, thus avoiding issues of eye movements. We therefore consider the MEG geometrical regularity effect, which comes at a relatively early latency (starting at ~160 ms) and even in a passive task, to provide the strongest evidence of geometric coding, unaffected by potential eye movement artefacts. 

      - I was wondering whether the authors would consider showing some un-thresholded maps just to see how widespread the activation of the geometric shapes is across all of the cortex.

      We share the uncorrected threshold maps in Fig. S3. for both adults and children in the category localizer, copied here as well. For the geometry task, most of the clusters identified are fairly big and survive cluster-corrected permutations; the uncorrected statistical maps look almost fully identical to the one presented in Fig. 3 (p<.001 map).

      - I'm missing some discussion on the role of early visual areas that goes beyond the RSA-CNN comparison. I would imagine that early visual areas are not only engaged due to top-down feedback (line 258) but may actually also encode some of the geometric features, such as parallel lines and symmetry. Is it feasible to look at early visual areas and examine what the similarity structure between different shapes looks like?

      If early visual areas encoded the geometric features that we propose, then even early sensor-level RSA matrices should show a strong impact of geometric features similarity, which is not what we find (figure 4D). We do, however, appreciate the referee’s request to examine more closely how this similarity structure looks like. We now provide a movie showing the significant correlation between neural activity and our two models (uncorrected participants); indeed, while the early occipital activity (around 110ms) is dominated by a significant correlation with the CNN model, there are also scattered significant sources associated to the symbolic model around these timepoints already.

      To test this further, we used beamformers to reconstruct the source-localized activity in calcarine cortex and performed an RSA analysis across that ROI. We find that indeed the CNN model is strongly significant at t=110ms (t=3.43, df=18, p=.003) while the geometric feature model is not (t=1.04, df=18, p=.31), and the CNN is significantly above the geometric feature model (t=4.25, df=18, p<.001). However, this result is not very stable across time, and there are significant temporal clusters around these timepoints associated to each model, with no significant cluster associated to a CNN > geometric (CNN: significant cluster from 88ms to 140ms, p<.001 in permutation based with 10000 permutations; geometric features has a significant cluster from 80ms to 104ms, p=.0475; no significant cluster on the difference between the two).

      (3) MEG

      - Similar to the fMRI set, I am a little worried that task difficulty has an effect on the decoding results, as the oddball should pop out more in more geometric shapes, making it easier to detect and easier to decode. Can the authors comment on whether it would matter for the conclusions whether they are decoding varying task difficulty or differences in geometric regularity, or whether they think this can be considered similarly?

      See above for an extensive discussion of the task difficulty effect. We point out that there is no task in the MEG data collection part. We have clarified the task design by updating our Fig. 4. Additionally, the fact that oddballs are more perceived more or less easily as a function of their geometric regularity is, in part, exactly the point that we are making – but, in MEG, even in the absence of a task of looking for them.

      - The authors discuss that the inflated baseline/onset decoding/regression estimates may occur because the shapes are being repeated within a mini-block, which I think is unlikely given the long ISIs and the fact that the geometric features model is not >0 at onset. I think their second possible explanation, that this may have to do with smoothing, is very possible. In the text, it said that for the non-smoothed result, the CNN encoding correlates with the data from 60ms, which makes a lot more sense. I would like to encourage the authors to provide readers with the unsmoothed beta values instead of the 100-ms smoothed version in the main plot to preserve the reason they chose to use MEG - for high temporal resolution!

      We fully agree with the reviewer and have accordingly updated the figures to show the unsmoothed data (see below). Indeed, there is now no significant CNN effect before ~60 ms (up to the accuracy of identifying onsets with our method).

      - In Figure 4C, I think it would be useful to either provide error bars or show variability across participants by plotting each participant's beta values. I think it would also be nice to plot the dissimilarity matrices based on the MEG data at select timepoints, just to see what the similarity structure is like.

      Following the reviewer’s recommendation, we plot the timeseries with SEM as shaded area, and thicker lines for statistically significant clusters, and we provide the unsmoothed version in figure Fig. 4. As for the dissimilarity matrices at select timepoints, this has now been added to figure Fig. 4.

      - To evaluate the source model reconstruction, I think the reader would need a little more detail on how it was done in the main text. How were the lead fields calculated? Which data was used to estimate the sources? How are the models correlated with the source data?

      We have imported some of the details in the main text as follows (as well as expanding the methods section a little):

      “To understand which brain areas generated these distinct patterns of activations, and probe whether they fit with our previous fMRI results, we performed a source reconstruction of our data. We projected the sensor activity onto each participant's cortical surfaces estimated from T1-images. The projection was performed using eLORETA and emptyroom recordings acquired on the same day to estimate noise covariance, with the default parameters of mne-bids-pipeline. Sources were spaced using a recursively subdivided octahedron (oct5). Group statistics were performed after alignement to fsaverage. We then replicated the RSA analysis […]”

      - In addition to fitting the CNN, which is used here to model differences in early visual cortex, have the authors considered looking at their fMRI results and localizing early visual regions, extracting a similarity matrix, and correlating that with the MEG and/or comparing it with the CNN model?

      We had ultimately decided against comparing the empirical similarity matrices from the MEG and fMRI experiments, first because the stimuli and tasks are different, and second because this would not be directly relevant to our goal, which is to evaluate whether a geometric-feature model accounts for the data. Thus, we systematically model empirical similarity matrices from fMRI and from MEG with our two models derived from different theories of shape perception in order to test predictions about their spatial and temporal dynamic. As for comparing the similarity matrix from early visual regions in fMRI with that predicted by the CNN model, this is effectively visible from our Fig. 3D where we perform searchlight RSA analysis and modeling with both the CNN and the geometric feature model; bilaterally, we find a correlation with the CNN model, although it sometimes overlap with predictions from the geometric feature model as well. We now include a section explaining this reasoning in appendix:

      “Representational similarity analysis also offers a way to directly compared similarity matrices measured in MEG and fMRI, thus allowing for fusion of those two modalities and tentatively assigning a “time stamp” to distinct MRI clusters. However, we did not attempt such an analysis here for several reasons. First, distinct tasks and block structures were used in MEG and fMRI. Second, a smaller list of shapes was used in fMRI, as imposed by the slower modality of acquisition. Third, our study was designed as an attempt to sort out between two models of geometric shape recognition. We therefore focused all analyses on this goal, which could not have been achieved by direct MEG-fMRI fusion, but required correlation with independently obtained model predictions.”

      Minor comments

      - It's a little unclear from the abstract that there is children's data for fMRI only.

      We have reworded the abstract to make this unambiguous

      - Figures 4a & b are missing y-labels.

      We can see how our labels could be confused with (sub-)plot titles and have moved them to make the interpretation clearer.

      - MEG: are the stimuli always shown in the same orientation and size?

      They are not, each shape has a random orientation and scaling. On top of a task example at the top of Fig. 4, we have now included a clearer mention of this in the main text when we introduce the task:

      “shapes were presented serially, one at a time, with small random changes in rotation and scaling parameters, in miniblocks with a fixed quadrilateral shape and with rare intruders with the bottom right corner shifted by a fixed amount (Sablé-Meyer et al., 2021)”

      - To me, the discussion section felt a little lengthy, and I wonder whether it would benefit from being a little more streamlined, focused, and targeted. I found that the structure was a little difficult to follow as it went from describing the result by modality (behavior, fMRI, MEG) back to discussing mostly aspects of the fMRI findings.

      We have tried to re-organize and streamline the discussion following these comments.

      Then, later on, I found that especially the section on "neurophysiological implementation of geometry" went beyond the focus of the data presented in the paper and was comparatively long and speculative.

      We have reexamined the discussion, but the citation of papers emphasizing a representation of non-accidental geometric properties in non-human animals was requested by other commentators on our article; and indeed, we think that they are relevant in the context of our prior suggestion that the composition of geometric features might be a uniquely human feature – these papers suggest that individual features may not, and that it is therefore compositionality which might be special to the human brain. We have nevertheless shortened it.

      Furthermore, we think that this section is important because symbolic models are often criticized for lack of a plausible neurophysiological implementation. It is therefore important to discuss whether and how the postulated symbolic geometric code could be realized in neural circuits. We have added this justification to the introduction of this section.

      Reviewer #2 (Recommendations for the authors):

      (1) If the authors want to specifically claim that their findings align with mathematical reasoning, they could at least show the overlap between the activation maps of the current study and those from prior work.

      This was added to the fMRI results. See our answers to the public review.

      (2) I wonder if the reason the authors only found aIPS in their first analysis (Figure 2) is because they are contrasting geometric shapes with figures that also have geometric properties. In other words, faces, objects, and houses also contain geometric shape information, and so the authors may have essentially contrasted out other areas that are sensitive to these features. One indication that this may be the case is that the geometric regularity effect and searchlight RSA (Figure 3) contains both anterior and posterior IPS regions (but crucially, little ventral activity). It might be interesting to discuss the implications of these differences.

      Indeed, we cannot exclude that the few symmetries, perpendicularity and parallelism cues that can be presented in faces, objects or houses were processed as such, perhaps within the ventral pathway, and that these representations would have been subtracted out. We emphasize that our subtraction isolates the geometrical features that are present in simple regular geometric shapes, over and above those that might exist in other categories. We have added this point to the discussion:

      “[… ] For instance, faces possess a plane of quasi-symmetry, and so do many other man-made tools and houses. Thus, our subtraction isolated the geometrical features that are present in simple regular geometric shapes (e.g. parallels, right angles, equality of length) over and above those that might already exist, in a less pure form, in other categories.”

      (3) I had a few questions regarding the MEG results.

      a. I didn't quite understand the task. What is a regular or oddball shape in this context? It's not clear what is being decoded. Perhaps a small example of the MEG task in Figure 4 would help?

      We now include an additional sub-figure in Fig. 4 to explain the paradigm. In brief: there is no explicit task, participants are simply asked to fixate. The shapes come in miniblocks of 30 identical reference shapes (up to rotation and scaling), among which some occasional deviant shapes randomly appear (created by moving the corner of the reference shape by some amount).

      b. In Figure 4A/B they describe the correlation with a 'symbolic model'. Is this the same as the geometric model in 4C?

      It is. We have removed this ambiguity by calling it “geometric model” and setting its color to the one associated to this model thought the article.

      c. The author's explanation for why geometric feature coding was slower than CNN encoding doesn't quite make sense to me. As an explanation, they suggest that previous studies computed "elementary features of location or motor affordance", whereas their study work examines "high-level mathematical information of an abstract nature." However, looking at the studies the authors cite in this section, it seems that these studies also examined the time course of shape processing in the dorsal pathway, not "elementary features of location or motor affordance." Second, it's not clear how the geometric feature model reflects high-level mathematical information (see point above about claiming this is related to math).

      We thank the referee for pointing out this inappropriate phrase, which we removed. We rephrased the rest of the paragraph to clarify our hypothesis in the following way:

      “However, in this work, we specifically probed the processing of geometric shapes that, if our hypothesis is correct, are represented as mental expressions that combine geometrical and arithmetic features of an abstract categorical nature, for instance representing “four equal sides” or “four right angles”. It seems logical that such expressions, combining number, angle and length information, take more time to be computed than the first wave of feedforward processing within the occipito-temporal visual pathway, and therefore only activate thereafter.”

      One explanation may be that the authors' geometric shapes require finer-grained discrimination than the object categories used in prior studies. i.e., the odd-ball task may be more of a fine-grained visual discrimination task. Indeed, it may not be a surprise that one can decode the difference between, say, a hammer and a butterfly faster than two kinds of quadrilaterals.

      We do not disagree with this intuition, although note that we do not have data on this point (we are reporting and modelling the MEG RSA matrix across geometric shapes only – in this part, no other shapes such as tools or faces are involved). Still, the difference between squares, rectangles, parallelograms and other geometric shapes in our stimuli is not so subtle. Furthermore, CNNs do make very fine grained distinctions, for instance between many different breeds of dogs in the IMAGENET corpus. Still, those sorts of distinctions capture the initial part of the MEG response, while the geometric model is needed only for the later part. Thus, we think that it is a genuine finding that geometric computations associated with the dorsal parietal pathway are slower than the image analysis performed by the ventral occipito-temporal pathway.

      d. CNN encoding at time 0 is a little weird, but the author's explanation, that this is explained by the fact that temporal smoothed using a 100 ms window makes sense. However, smoothing by 100 ms is quite a lot, and it doesn't seem accurate to present continuous time course data when the decoding or RSA result at each time point reflects a 100 ms bin. It may be more accurate to simply show unsmoothed data. I'm less convinced by the explanation about shape prediction.

      We agree. Following the reviewer’s advice, as well as the recommendation from reviewer 1, we now display unsmoothed plots, and the effects now exhibit a more reasonable timing (Figure 4D), with effects starting around ~60 ms for CNN encoding.

      (4) I appreciate the author's use of multiple models and their explanation for why DINOv2 explains more variance than the geometric and CNN models (that it represents both types of features. A variance partitioning analysis may help strengthen this conclusion (Bonner & Epstein, 2018; Lescroart et al., 2015).

      However, one difference between DINOv2 and the CNN used here is that it is trained on a dataset of 142 million images vs. the 1.5 million images used in ImageNet. Thus, DINOv2 is more likely to have been exposed to simple geometric shapes during training, whereas standard ImageNet trained models are not. Indeed, prior work has shown that lesioning line drawing-like images from such datasets drastically impairs the performance of large models (Mayilvahanan et al., 2024). Thus, it is unlikely that the use of a transformer architecture explains the performance of DINOv2. The authors could include an ImageNet-trained transformer (e.g., ViT) and a CNN trained on large datasets (e.g., ResNet trained on the Open Clip dataset) to test these possibilities. However, I think it's also sufficient to discuss visual experience as a possible explanation for the CNN and DINOv2 results. Indeed, young children are exposed to geometric shapes, whereas ImageNet-trained CNNs are not.

      We agree with the reviewer’s observation. In fact, new and ongoing work from the lab is also exploring this; we have included in supplementary materials exactly what the reviewer is suggesting, namely the time course of the correlation with ViT and with ConvNeXT. In line with the reviewers’ prediction, these networks, trained on much larger dataset and with many more parameters, can also fit the human data as well as DINOv2. We ran additional analysis of the MEG data with ViT and ConvNeXT, which we now report in Fig. S6 as well as in an additional sentence in that section:

      “[…] similar results were obtained by performing the same analysis, not only with another vision transformer network, ViT, but crucially using a much larger convolutional neural network, ConvNeXT, which comprises ~800M parameters and has been trained on 2B images, likely including many geometric shapes and human drawings. For the sake of completeness, RSA analysis in sensor space of the MEG data with these two models is provided in Fig. S6.”

      We conclude that the size and nature of the training set could be as important as the architecture – but also note that humans do not rely on such a huge training set. We have updated the text, as well as Fig. S6, accordingly by updating the section now entitled “Vision Transformers and Larger Neural Networks”, and the discussion section on theoretical models.

      (5) The authors may be interested in a recent paper from Arcaro and colleagues that showed that the parietal cortex is greatly expanded in humans (including infants) compared to non-human primates (Meyer et al., 2025), which may explain the stronger geometric reasoning abilities of humans.

      A very interesting article indeed! We have updated our article to incorporate this reference in the discussion, in the section on visual pathways, as follows:

      “Finally, recent work shows that within the visual cortex, the strongest relative difference in growth between human and non-human primates is localized in parietal areas (Meyer et al., 2025). If this expansion reflected the acquisition of new processing abilities in these regions, it  might explain the observed differences in geometric abilities between human and non-human primates (Sablé-Meyer et al., 2021).”

      Also, the authors may want to include this paper, which uses a similar oddity task and compelling shows that crows are sensitive to geometric regularity:

      Schmidbauer, P., Hahn, M., & Nieder, A. (2025). Crows recognize geometric regularity. Science Advances, 11(15), eadt3718. https://doi.org/10.1126/sciadv.adt3718

      We have ongoing discussions with the authors of this work and are  have prepared a response to their findings (Sablé-Meyer and Dehaene, 2025)–ultimately, we think that this discussion, which we agree is important, does not have its place in the present article. They used a reduced version of our design, with amplified differences in the intruders. While they did not test the fit of their model with CNN or geometric feature models, we did and found that a simple CNN suffices to account for crow behavior. Thus, we disagree that their conclusions follow from their results and their conclusions. But the present article does not seem to be the right platform to engage in this discussion.

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      Reviewer #3 (Recommendations for the authors):

      Bring into the discussion some of the issues outlined above, especially a) the spatial rather than visual of the geometric figures and b) the non-representational aspects of geometric form aspects.

      We thank the reviewer for their recommendations – see our response to the public review for more details.