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DOI: 10.7554/eLife.105834
Resource: None
Curator: @scibot
SciCrunch record: RRID:DGRC_9148
RRID:DGRC_9148
DOI: 10.7554/eLife.105834
Resource: None
Curator: @scibot
SciCrunch record: RRID:DGRC_9148
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DOI: 10.7554/eLife.105834
Resource: (Roche Cat# 11867423001, RRID:AB_390918)
Curator: @scibot
SciCrunch record: RRID:AB_390918
RRID:AB_301447
DOI: 10.7554/eLife.105834
Resource: (Abcam Cat# ab14748, RRID:AB_301447)
Curator: @scibot
SciCrunch record: RRID:AB_301447
RRID:AB_2534079
DOI: 10.7554/eLife.105834
Resource: (Thermo Fisher Scientific Cat# A-11012, RRID:AB_2534079)
Curator: @scibot
SciCrunch record: RRID:AB_2534079
BDSC#60276
DOI: 10.7554/eLife.100890
Resource: RRID:BDSC_60276
Curator: @scibot
SciCrunch record: RRID:BDSC_60276
RRID:AB_2536611
DOI: 10.7554/eLife.100890
Resource: (Thermo Fisher Scientific Cat# M11217, RRID:AB_2536611)
Curator: @scibot
SciCrunch record: RRID:AB_2536611
RRID:AB_572268
DOI: 10.7554/eLife.100890
Resource: (ImmunoStar Cat# 22941, RRID:AB_572268)
Curator: @scibot
SciCrunch record: RRID:AB_572268
RRID:AB_221570
DOI: 10.7554/eLife.100890
Resource: (Molecular Probes Cat# A-6455, RRID:AB_221570)
Curator: @scibot
SciCrunch record: RRID:AB_221570
RRID:AB_259941
DOI: 10.7554/eLife.100890
Resource: (Sigma-Aldrich Cat# G6539, RRID:AB_259941)
Curator: @scibot
SciCrunch record: RRID:AB_259941
JAX ID: 003025
DOI: 10.7554/eLife.104720.2
Resource: (IMSR Cat# JAX_003025,RRID:IMSR_JAX:003025)
Curator: @dhovakimyan1
SciCrunch record: RRID:IMSR_JAX:003025
JAX ID: 000664
DOI: 10.7554/eLife.104720.2
Resource: RRID:IMSR_JAX:000664
Curator: @dhovakimyan1
SciCrunch record: RRID:IMSR_JAX:000664
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DOI: 10.7554/eLife.104720.2
Resource: (Cell Signaling Technology Cat# 2250, RRID:AB_2247211)
Curator: @scibot
SciCrunch record: RRID:AB_2247211
RRID:SCR_018931
DOI: 10.7554/eLife.101918
Resource: EnhancedVolcano (RRID:SCR_018931)
Curator: @scibot
SciCrunch record: RRID:SCR_018931
RRID:SCR_025802
DOI: 10.7554/eLife.101918
Resource: pySCENIC (RRID:SCR_025802)
Curator: @scibot
SciCrunch record: RRID:SCR_025802
RRID:SCR_011847
DOI: 10.7554/eLife.101918
Resource: Trim Galore (RRID:SCR_011847)
Curator: @scibot
SciCrunch record: RRID:SCR_011847
RRID:Addgene_24129
DOI: 10.7554/eLife.101918
Resource: RRID:Addgene_24129
Curator: @scibot
SciCrunch record: RRID:Addgene_24129
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DOI: 10.7554/eLife.101918
Resource: HISAT2 (RRID:SCR_015530)
Curator: @scibot
SciCrunch record: RRID:SCR_015530
RRID:Addgene_173953
DOI: 10.7554/eLife.101918
Resource: RRID:Addgene_173953
Curator: @scibot
SciCrunch record: RRID:Addgene_173953
RRID:Addgene_139647
DOI: 10.7554/eLife.101918
Resource: None
Curator: @scibot
SciCrunch record: RRID:Addgene_139647
RRID:AB_2534014
DOI: 10.7554/eLife.101918
Resource: (Thermo Fisher Scientific Cat# A10038, RRID:AB_11180593)
Curator: @scibot
SciCrunch record: RRID:AB_11180593
RRID:AB_395888
DOI: 10.7554/eLife.101918
Resource: (BD Biosciences Cat# 555498, RRID:AB_395888)
Curator: @scibot
SciCrunch record: RRID:AB_395888
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DOI: 10.7554/eLife.101918
Resource: (R and D Systems Cat# PP-H7223-00, RRID:AB_2155481)
Curator: @scibot
SciCrunch record: RRID:AB_2155481
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DOI: 10.7554/eLife.101918
Resource: (Jackson ImmunoResearch Labs Cat# 705-545-147, RRID:AB_2336933)
Curator: @scibot
SciCrunch record: RRID:AB_2336933
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DOI: 10.7554/eLife.101918
Resource: (Thermo Fisher Scientific Cat# A-11057, RRID:AB_2534104)
Curator: @scibot
SciCrunch record: RRID:AB_2534104
RRID:AB_395870
DOI: 10.7554/eLife.101918
Resource: (BD Biosciences Cat# 555478, RRID:AB_395870)
Curator: @scibot
SciCrunch record: RRID:AB_395870
RRID:AB_305643
DOI: 10.7554/eLife.101918
Resource: (Abcam Cat# ab6673, RRID:AB_305643)
Curator: @scibot
SciCrunch record: RRID:AB_305643
RRID:AB_628308
DOI: 10.7554/eLife.101918
Resource: (Santa Cruz Biotechnology Cat# sc-1240, RRID:AB_628308)
Curator: @scibot
SciCrunch record: RRID:AB_628308
RRID:AB_393778
DOI: 10.7554/eLife.101918
Resource: (BD Biosciences Cat# 550609, RRID:AB_393778)
Curator: @scibot
SciCrunch record: RRID:AB_393778
RRID:AB_2737293
DOI: 10.7554/eLife.101918
Resource: (Santa Cruz Biotechnology Cat# SC-514134, RRID:AB_2737293)
Curator: @scibot
SciCrunch record: RRID:AB_2737293
RRID:AB_2269865
DOI: 10.7554/eLife.101918
Resource: (Santa Cruz Biotechnology Cat# sc-555, RRID:AB_2269865)
Curator: @scibot
SciCrunch record: RRID:AB_2269865
RRID:AB_2725937
DOI: 10.7554/eLife.101918
Resource: (Miltenyi Biotec Cat# 130-113-108, RRID:AB_2725937)
Curator: @scibot
SciCrunch record: RRID:AB_2725937
RRID:AB_10991100
DOI: 10.7554/eLife.101918
Resource: (Santa Cruz Biotechnology Cat# sc-374277, RRID:AB_10991100)
Curator: @scibot
SciCrunch record: RRID:AB_10991100
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DOI: 10.7554/eLife.101918
Resource: (R and D Systems Cat# AF2945, RRID:AB_2155098)
Curator: @scibot
SciCrunch record: RRID:AB_2155098
RRRC No. 659
DOI: 10.7554/eLife.103260
Resource: (RRRC Cat# 00659,RRID:RRRC_00659)
Curator: @bandrow
SciCrunch record: RRID:RRRC_00659
Uniprot
DOI: 10.7554/eLife.103729.2
Resource: Universal Protein Resource (RRID:SCR_002380)
Curator: @areedewitt04
SciCrunch record: RRID:SCR_002380
AB_221569
DOI: 10.7554/eLife.107566.1
Resource: (Molecular Probes Cat# A-11122, RRID:AB_221569)
Curator: @scibot
SciCrunch record: RRID:AB_221569
AB_2313584
DOI: 10.7554/eLife.107566.1
Resource: (Jackson ImmunoResearch Labs Cat# 711-545-152, RRID:AB_2313584)
Curator: @scibot
SciCrunch record: RRID:AB_2313584
AB_398980
DOI: 10.7554/eLife.107566.1
Resource: (BD Biosciences Cat# 611520, RRID:AB_398980)
Curator: @scibot
SciCrunch record: RRID:AB_398980
AB_2340813
DOI: 10.7554/eLife.107566.1
Resource: (Jackson ImmunoResearch Labs Cat# 715-165-150, RRID:AB_2340813)
Curator: @scibot
SciCrunch record: RRID:AB_2340813
RRID:SCR_019202
DOI: 10.7554/eLife.107397.1
Resource: New York University School of Medicine Langone Health Cryo-Electron Microscopy Laboratory Core Facility (RRID:SCR_019202)
Curator: @scibot
SciCrunch record: RRID:SCR_019202
ID: 006474
DOI: 10.7554/eLife.107708.1
Resource: (IMSR Cat# JAX_006474,RRID:IMSR_JAX:006474)
Curator: @dhovakimyan1
SciCrunch record: RRID:IMSR_JAX:006474
RRID:SCR_025044
DOI: 10.7554/eLife.107708.1
Resource: LJPcalc (RRID:SCR_025044)
Curator: @scibot
SciCrunch record: RRID:SCR_025044
RRID:Addgene_18917
DOI: 10.7554/eLife.107708.1
Resource: RRID:Addgene_18917
Curator: @scibot
SciCrunch record: RRID:Addgene_18917
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DOI: 10.7554/eLife.105277
Resource: (IMSR Cat# JAX_016961,RRID:IMSR_JAX:016961)
Curator: @dhovakimyan1
SciCrunch record: RRID:IMSR_JAX:016961
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DOI: 10.7554/eLife.105277
Resource: University of California San Francisco Parnassus Flow Cytometry Core Facility (RRID:SCR_018206)
Curator: @scibot
SciCrunch record: RRID:SCR_018206
RRID:AB_2860113
DOI: 10.7554/eLife.105277
Resource: None
Curator: @scibot
SciCrunch record: RRID:AB_2860113
RRID:SCR_016582
DOI: 10.7554/eLife.105277
Resource: kallisto (RRID:SCR_016582)
Curator: @scibot
SciCrunch record: RRID:SCR_016582
RRID:AB_2535718
DOI: 10.7554/eLife.102230
Resource: (Thermo Fisher Scientific Cat# A-21050, RRID:AB_2535718)
Curator: @dhovakimyan1
SciCrunch record: RRID:AB_2535718
RRID:AB_2534096
DOI: 10.7554/eLife.102230
Resource: (Thermo Fisher Scientific Cat# A-11039, RRID:AB_2534096)
Curator: @scibot
SciCrunch record: RRID:AB_2534096
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DOI: 10.7554/eLife.102230
Resource: RRID:BDSC_55138
Curator: @scibot
SciCrunch record: RRID:BDSC_55138
RRID:BDSC_55139
DOI: 10.7554/eLife.102230
Resource: RRID:BDSC_55139
Curator: @scibot
SciCrunch record: RRID:BDSC_55139
RRID:BDSC_44277
DOI: 10.7554/eLife.102230
Resource: RRID:BDSC_44277
Curator: @scibot
SciCrunch record: RRID:BDSC_44277
RRID:BDSC_55137
DOI: 10.7554/eLife.102230
Resource: RRID:BDSC_55137
Curator: @scibot
SciCrunch record: RRID:BDSC_55137
RRID:BDSC_79603
DOI: 10.7554/eLife.102230
Resource: RRID:BDSC_79603
Curator: @scibot
SciCrunch record: RRID:BDSC_79603
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DOI: 10.7554/eLife.102230
Resource: (Creative Diagnostics Cat# DMAB9116MD, RRID:AB_2392664)
Curator: @scibot
SciCrunch record: RRID:AB_2392664
RRID:AB_300798
DOI: 10.7554/eLife.102230
Resource: (Abcam Cat# ab13970, RRID:AB_300798)
Curator: @scibot
SciCrunch record: RRID:AB_300798
RRID:BDSC_32189
DOI: 10.7554/eLife.102230
Resource: RRID:BDSC_32189
Curator: @scibot
SciCrunch record: RRID:BDSC_32189
RRID:BDSC_75862
DOI: 10.7554/eLife.102230
Resource: RRID:BDSC_75862
Curator: @scibot
SciCrunch record: RRID:BDSC_75862
RRID:BDSC_52867
DOI: 10.7554/eLife.102230
Resource: RRID:BDSC_52867
Curator: @scibot
SciCrunch record: RRID:BDSC_52867
RRID:BDSC_88574
DOI: 10.7554/eLife.102230
Resource: RRID:BDSC_88574
Curator: @scibot
SciCrunch record: RRID:BDSC_88574
RRID:BDSC_53740
DOI: 10.7554/eLife.102230
Resource: RRID:BDSC_53740
Curator: @scibot
SciCrunch record: RRID:BDSC_53740
RRID:BDSC_48322
DOI: 10.7554/eLife.102230
Resource: RRID:BDSC_48322
Curator: @scibot
SciCrunch record: RRID:BDSC_48322
RRID:BDSC_32186
DOI: 10.7554/eLife.102230
Resource: RRID:BDSC_32186
Curator: @scibot
SciCrunch record: RRID:BDSC_32186
RRID:AB_1134159
DOI: 10.7554/eLife.98662
Resource: (BioLegend Cat# 127610, RRID:AB_1134159)
Curator: @scibot
SciCrunch record: RRID:AB_1134159
RRID:IMSR_JAX:005582
DOI: 10.7554/eLife.98662
Resource: (IMSR Cat# JAX_005582,RRID:IMSR_JAX:005582)
Curator: @scibot
SciCrunch record: RRID:IMSR_JAX:005582
RRID:IMSR_JAX:000664
DOI: 10.7554/eLife.98662
Resource: RRID:IMSR_JAX:000664
Curator: @scibot
SciCrunch record: RRID:IMSR_JAX:000664
RRID:AB_261889
DOI: 10.7554/eLife.106469
Resource: (Sigma-Aldrich Cat# V8137, RRID:AB_261889)
Curator: @scibot
SciCrunch record: RRID:AB_261889
RRID:AB_2535860
DOI: 10.7554/eLife.106469
Resource: (Thermo Fisher Scientific Cat# A-21442, RRID:AB_2535860)
Curator: @scibot
SciCrunch record: RRID:AB_2535860
RRID:AB_262044
DOI: 10.7554/eLife.106469
Resource: (Sigma-Aldrich Cat# F1804, RRID:AB_262044)
Curator: @scibot
SciCrunch record: RRID:AB_262044
RRID:AB_2534069
DOI: 10.7554/eLife.106469
Resource: (Thermo Fisher Scientific Cat# A-11001, RRID:AB_2534069)
Curator: @scibot
SciCrunch record: RRID:AB_2534069
RRID:AB_477583
DOI: 10.7554/eLife.106469
Resource: (Sigma-Aldrich Cat# T6199, RRID:AB_477583)
Curator: @scibot
SciCrunch record: RRID:AB_477583
RRID:AB_796202
DOI: 10.7554/eLife.106469
Resource: (Sigma-Aldrich Cat# F2555, RRID:AB_796202)
Curator: @scibot
SciCrunch record: RRID:AB_796202
RRID:AB_2637089
DOI: 10.7554/eLife.106469
Resource: (Sigma-Aldrich Cat# M8823, RRID:AB_2637089)
Curator: @scibot
SciCrunch record: RRID:AB_2637089
RRID:AB_261888
DOI: 10.7554/eLife.106469
Resource: (Sigma-Aldrich Cat# V8012, RRID:AB_261888)
Curator: @scibot
SciCrunch record: RRID:AB_261888
RRID:Addgene_212936
DOI: 10.7554/eLife.106469
Resource: RRID:Addgene_212936
Curator: @scibot
SciCrunch record: RRID:Addgene_212936
RRID:AB_302613
DOI: 10.7554/eLife.106469
Resource: (Abcam Cat# ab1791, RRID:AB_302613)
Curator: @scibot
SciCrunch record: RRID:AB_302613
RRID:Addgene_32369
DOI: 10.7554/eLife.106469
Resource: None
Curator: @scibot
SciCrunch record: RRID:Addgene_32369
RRID:CVCL_0060
DOI: 10.7554/eLife.106469
Resource: (NCI-DTP Cat# NCI-H1299, RRID:CVCL_0060)
Curator: @scibot
SciCrunch record: RRID:CVCL_0060
RRID:Addgene_16451
DOI: 10.7554/eLife.106469
Resource: RRID:Addgene_16451
Curator: @scibot
SciCrunch record: RRID:Addgene_16451
RRID:Addgene_20140
DOI: 10.7554/eLife.106469
Resource: RRID:Addgene_20140
Curator: @scibot
SciCrunch record: RRID:Addgene_20140
RRID:Addgene_16591
DOI: 10.7554/eLife.106469
Resource: None
Curator: @scibot
SciCrunch record: RRID:Addgene_16591
ATCCCRL-3216
DOI: 10.7554/eLife.92406
Resource: (RRID:CVCL_0063)
Curator: @areedewitt04
SciCrunch record: RRID:CVCL_0063
We then evolved the deletion strain and observed that the genetic adaptation was recurrently based on a strategic mutation that changed the anticodon of other tRNA genes to match that of the deleted one.
This is a key finding. It highlights how a single point mutation in an anticodon can functionally replace a lost tRNA, emphasizing the adaptability of the translational machinery.
Statistica
DOI: 10.7554/eLife.74493
Resource: STATISTICA (RRID:SCR_014213)
Curator: @areedewitt04
SciCrunch record: RRID:SCR_014213
catalog no. 006414
DOI: 10.7554/eLife.100722
Resource: (IMSR Cat# JAX_006414,RRID:IMSR_JAX:006414)
Curator: @dhovakimyan1
SciCrunch record: RRID:IMSR_JAX:006414
RRID:Addgene_20298
DOI: 10.7554/eLife.100722
Resource: RRID:Addgene_20298
Curator: @dhovakimyan1
SciCrunch record: RRID:Addgene_20298
RRID:IMSR_JAX:024109
DOI: 10.7554/eLife.100722
Resource: (IMSR Cat# JAX_024109,RRID:IMSR_JAX:024109)
Curator: @scibot
SciCrunch record: RRID:IMSR_JAX:024109
RRID:Addgene_20297
DOI: 10.7554/eLife.100722
Resource: RRID:Addgene_20297
Curator: @scibot
SciCrunch record: RRID:Addgene_20297
RRID:IMSR_JAX:000664
DOI: 10.7554/eLife.100722
Resource: RRID:IMSR_JAX:000664
Curator: @scibot
SciCrunch record: RRID:IMSR_JAX:000664
RRID:IMSR_JAX:023720
DOI: 10.7554/eLife.100722
Resource: RRID:IMSR_JAX:023720
Curator: @scibot
SciCrunch record: RRID:IMSR_JAX:023720
RRID:IMSR_JAX:005965
DOI: 10.7554/eLife.100722
Resource: (IMSR Cat# JAX_005965,RRID:IMSR_JAX:005965)
Curator: @scibot
SciCrunch record: RRID:IMSR_JAX:005965
RRID:SCR_020996
DOI: 10.7554/eLife.107841.1
Resource: Northwestern University Feinberg School of Medicine Center for Advanced Microscopy Nikon Imaging Center Core Facility (RRID:SCR_020996)
Curator: @scibot
SciCrunch record: RRID:SCR_020996
RRID:AB_143165
DOI: 10.7554/eLife.107252.1
Resource: (Thermo Fisher Scientific Cat# A-11008, RRID:AB_143165)
Curator: @scibot
SciCrunch record: RRID:AB_143165
RRID:AB_221569
DOI: 10.7554/eLife.107252.1
Resource: (Molecular Probes Cat# A-11122, RRID:AB_221569)
Curator: @scibot
SciCrunch record: RRID:AB_221569
RRID:SCR_001622
DOI: 10.7554/eLife.106840.1
Resource: MATLAB (RRID:SCR_001622)
Curator: @scibot
SciCrunch record: RRID:SCR_001622
plasmid_39239
DOI: 10.7554/eLife.106728
Resource: RRID:Addgene_39239
Curator: @scibot
SciCrunch record: RRID:Addgene_39239
plasmid_173484
DOI: 10.7554/eLife.106728
Resource: RRID:Addgene_173484
Curator: @scibot
SciCrunch record: RRID:Addgene_173484
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DOI: 10.7554/eLife.67170
Resource: RRID:Addgene_44481
Curator: @areedewitt04
SciCrunch record: RRID:Addgene_44481
https://www.addgene.org/1494/
DOI: 10.7554/eLife.67170
Resource: RRID:Addgene_1494
Curator: @areedewitt04
SciCrunch record: RRID:Addgene_1494
https://www.addgene.org/1686/
DOI: 10.7554/eLife.67170
Resource: RRID:Addgene_1686
Curator: @areedewitt04
SciCrunch record: RRID:Addgene_1686
MUSCLE
DOI: 10.7554/eLife.74336
Resource: MUSCLE (RRID:SCR_011812)
Curator: @areedewitt04
SciCrunch record: RRID:SCR_011812
https://emcore.ucsf.edu/ucsf-software
DOI: 10.7554/eLife.71420
Resource: University of California at San Francisco Advanced Microscopy Core Facility (RRID:SCR_025781)
Curator: @dhovakimyan1
SciCrunch record: RRID:SCR_025781
AB_5909
DOI: 10.7554/eLife.98634
Resource: None
Curator: @areedewitt04
SciCrunch record: RRID:AB_2108517
AB_14106
DOI: 10.7554/eLife.101984
Resource: None
Curator: @areedewitt04
SciCrunch record: RRID:AB_443021
RRID:Addgene_20681
DOI: 10.7554/eLife.107556.1
Resource: RRID:Addgene_20681
Curator: @dhovakimyan1
SciCrunch record: RRID:Addgene_20681
RRID:SCR_022930
DOI: 10.7554/eLife.107556.1
Resource: Compass for Simple Western (RRID:SCR_022930)
Curator: @scibot
SciCrunch record: RRID:SCR_022930
RRID:AB_476744
DOI: 10.7554/eLife.107556.1
Resource: (Sigma-Aldrich Cat# A5441, RRID:AB_476744)
Curator: @scibot
SciCrunch record: RRID:AB_476744
RRID:AB_2107448
DOI: 10.7554/eLife.107556.1
Resource: (Abcam Cat# ab8245, RRID:AB_2107448)
Curator: @scibot
SciCrunch record: RRID:AB_2107448
RRID:SCR_007370
DOI: 10.7554/eLife.107556.1
Resource: Imaris (RRID:SCR_007370)
Curator: @scibot
SciCrunch record: RRID:SCR_007370
RRID:AB_10560513
DOI: 10.7554/eLife.107556.1
Resource: (Cell Signaling Technology Cat# 3726, RRID:AB_10560513)
Curator: @scibot
SciCrunch record: RRID:AB_10560513
RRID:AB_2891282
DOI: 10.7554/eLife.107556.1
Resource: (Synaptic Systems Cat# 234 009, RRID:AB_2891282)
Curator: @scibot
SciCrunch record: RRID:AB_2891282
RRID:AB_477499
DOI: 10.7554/eLife.107556.1
Resource: (Sigma-Aldrich Cat# S2532, RRID:AB_477499)
Curator: @scibot
SciCrunch record: RRID:AB_477499
RRID:AB_87705
DOI: 10.7554/eLife.107556.1
Resource: (Innovative Research Cat# 51-6900, RRID:AB_87705)
Curator: @scibot
SciCrunch record: RRID:AB_87705
RRID:AB_887717
DOI: 10.7554/eLife.107556.1
Resource: (Synaptic Systems Cat# 147 011, RRID:AB_887717)
Curator: @scibot
SciCrunch record: RRID:AB_887717
RRID:AB_887878
DOI: 10.7554/eLife.107556.1
Resource: (Synaptic Systems Cat# 135 304, RRID:AB_887878)
Curator: @scibot
SciCrunch record: RRID:AB_887878
RRID:AB_887873
DOI: 10.7554/eLife.107556.1
Resource: (Synaptic Systems Cat# 131 004, RRID:AB_887873)
Curator: @scibot
SciCrunch record: RRID:AB_887873
RRID:AB_177521
DOI: 10.7554/eLife.107556.1
Resource: (Millipore Cat# AB5541, RRID:AB_177521)
Curator: @scibot
SciCrunch record: RRID:AB_177521
RRID:AB_2533001
DOI: 10.7554/eLife.107556.1
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Curator: @scibot
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DOI: 10.7554/eLife.107556.1
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DOI: 10.7554/eLife.107556.1
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DOI: 10.7554/eLife.107556.1
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DOI: 10.7554/eLife.107556.1
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DOI: 10.7554/eLife.107556.1
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DOI: 10.7554/eLife.107556.1
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DOI: 10.7554/eLife.107556.1
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DOI: 10.7554/eLife.107556.1
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DOI: 10.7554/eLife.107556.1
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DOI: 10.7554/eLife.107556.1
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Stock No 000664
DOI: 10.7554/eLife.107298.1
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SCR_015636
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DOI: 10.7554/eLife.106550.1
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t5+1 could assemble these into αβ+ and γδε+ fragments, guided only by partially overlapping ‘−’ strands (Figure 6b, Figure 6—figure supplement 1). Through non-covalent association (Vaish et al., 2003; Mutschler et al., 2015), the ribozyme-synthesised αβ+ and γδε+ fragments spontaneously reconstituted a new catalytically active triplet polymerase ribozyme (with in vitro transcribed type 1 RNA)
The ribozyme can build copies of parts of itself and put them together like puzzle pieces to regenerate function. That’s basically modular self-replication, which I thought only synthetic biology was capable of.
RNA catalysis is dependent upon RNA folding, and this yields structures that can block replication of such RNAs. To address this apparent paradox, we have re-examined the building blocks used for RNA replication.
This blew my mind, RNA has to fold into specific shapes to work like a ribozyme, but those same shapes make it harder to copy. It’s like building a key that locks itself.
Although still inefficient, the fact that the nascent activity of the 0core ribozyme could already copy templates that had confounded an established RPR encouraged us to continue to seek improved triplet polymerase ribozymes to leverage this substrate behaviour.
This early success gave the researchers a good reason to keep pushing forward, since it hinted that triplet-based RNA replication might help overcome a key obstacle in the field.
he strong inhibitory role of this central feature of RNA leads to an antagonism between the degree to which an RNA sequence is able to fold into a defined three-dimensional structure to encode function (such as catalysis) and the ease with which it can be replicated (Boza et al., 2014).
This "structure vs. replication" tradeoff is a bigger deal because it may have made it harder for life to get started using RNA as both the genetic material and the machinery for replication.
Yet, although ribozymes can be made to copy straight RNA templates this way, folded RNA templates – including the replicase ribozyme itself – impede copying. In this apparent paradox, a ribozyme needs to fold to copy RNA, but when folded, is itself copied poorly. Here, Attwater et al. wondered if choosing different building blocks might overcome this contradiction.
I think this presents a contradiction, that the structure hat enables function also hinders duplication. However, the sentence introduces a key barrier that the research seeks to address.
https://biccn.org/
DOI: 10.7554/eLife.94000
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R
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006148, The Jackson Laboratory
DOI: 10.7554/eLife.78517
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ImageJ
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Jackson Laboratory
DOI: 10.7554/eLife.107037.1
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SciCrunch record: RRID:IMSR_JAX:000664
GROMACS
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Dask
DOI: 10.7554/eLife.106509.1
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DOI: 10.7554/eLife.106509.1
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DOI: 10.7554/eLife.106473.1
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#000461
DOI: 10.7554/eLife.105153
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DOI: 10.7554/eLife.105153
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DOI: 10.7554/eLife.105153
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DOI: 10.7554/eLife.105153
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DOI: 10.7554/eLife.105153
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DOI: 10.7554/eLife.105153
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DOI: 10.7554/eLife.105153
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DOI: 10.7554/eLife.105153
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DOI: 10.7554/eLife.99368
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SciCrunch record: RRID:Addgene_49411
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DOI: 10.7554/eLife.99368
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SciCrunch record: RRID:DGGR_106098
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DOI: 10.7554/eLife.99368
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DOI: 10.7554/eLife.99368
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DOI: 10.7554/eLife.99368
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SciCrunch record: RRID:AB_528235
RRID:AB_528121
DOI: 10.7554/eLife.99368
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DOI: 10.7554/eLife.99368
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SciCrunch record: RRID:BDSC_36305
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DOI: 10.7554/eLife.99368
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DOI: 10.7554/eLife.99368
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SciCrunch record: RRID:BDSC_55807
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Curator: @scibot
SciCrunch record: RRID:AB_477585
ATCC CRL-2302
DOI: 10.7554/eLife.96414
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Curator: @dhovakimyan1
SciCrunch record: RRID:CVCL_0145