EurExpress
DOI: 10.7554/eLife.46773
Resource: Eurexpress (RRID:SCR_005093)
Curator: @Naa003
SciCrunch record: RRID:SCR_005093
EurExpress
DOI: 10.7554/eLife.46773
Resource: Eurexpress (RRID:SCR_005093)
Curator: @Naa003
SciCrunch record: RRID:SCR_005093
FVB
DOI: 10.7554/eLife.46773
Resource: (IMSR Cat# JAX_001800,RRID:IMSR_JAX:001800)
Curator: @Naa003
SciCrunch record: RRID:IMSR_JAX:001800
LAS X
DOI: 10.7554/eLife.48003
Resource: Leica Application Suite X (RRID:SCR_013673)
Curator: @Naa003
SciCrunch record: RRID:SCR_013673
Image J
DOI: 10.7554/eLife.48003
Resource: ImageJ (RRID:SCR_003070)
Curator: @Naa003
SciCrunch record: RRID:SCR_003070
CHOPCHOP
DOI: 10.7554/eLife.48003
Resource: CHOPCHOP (RRID:SCR_015723)
Curator: @Naa003
SciCrunch record: RRID:SCR_015723
GraphPad Prism
DOI: 10.7554/eLife.49248
Resource: GraphPad Prism (RRID:SCR_002798)
Curator: @Naa003
SciCrunch record: RRID:SCR_002798
CuFi-4 cell line
DOI: 10.7554/eLife.49248
Resource: (ATCC Cat# CRL-4015, RRID:CVCL_C459)
Curator: @Naa003
SciCrunch record: RRID:CVCL_C459
CuFi-1 cell line
DOI: 10.7554/eLife.49248
Resource: (ATCC Cat# CRL-4013, RRID:CVCL_C457)
Curator: @Naa003
SciCrunch record: RRID:CVCL_C457
IB3-1
DOI: 10.7554/eLife.49248
Resource: (BCRJ Cat# 0114, RRID:CVCL_0338)
Curator: @Naa003
SciCrunch record: RRID:CVCL_0338
BEAS-2B cell line
DOI: 10.7554/eLife.49248
Resource: (BCRJ Cat# 0395, RRID:CVCL_0168)
Curator: @Naa003
SciCrunch record: RRID:CVCL_0168
DESeq2
DOI: 10.7554/eLife.48284
Resource: DESeq2 (RRID:SCR_015687)
Curator: @Naa003
SciCrunch record: RRID:SCR_015687
featureCounts
DOI: 10.7554/eLife.48284
Resource: featureCounts (RRID:SCR_012919)
Curator: @Naa003
SciCrunch record: RRID:SCR_012919
HISAT2
DOI: 10.7554/eLife.48284
Resource: HISAT2 (RRID:SCR_015530)
Curator: @Naa003
SciCrunch record: RRID:SCR_015530
UMI-tools
DOI: 10.7554/eLife.48284
Resource: UMI-tools (RRID:SCR_017048)
Curator: @Naa003
SciCrunch record: RRID:SCR_017048
Matplotlib
DOI: 10.7554/eLife.48056
Resource: MatPlotLib (RRID:SCR_008624)
Curator: @Naa003
SciCrunch record: RRID:SCR_008624
Flybase
DOI: 10.7554/eLife.48056
Resource: FlyBase (RRID:SCR_006549)
Curator: @Naa003
SciCrunch record: RRID:SCR_006549
Python
DOI: 10.7554/eLife.48056
Resource: Python Programming Language (RRID:SCR_008394)
Curator: @Naa003
SciCrunch record: RRID:SCR_008394
Adobe Illustrator
DOI: 10.7554/eLife.48056
Resource: Adobe Illustrator (RRID:SCR_010279)
Curator: @Naa003
SciCrunch record: RRID:SCR_010279
Adobe Photoshop
DOI: 10.7554/eLife.48056
Resource: Adobe Photoshop (RRID:SCR_014199)
Curator: @Naa003
SciCrunch record: RRID:SCR_014199
Fiji
DOI: 10.7554/eLife.48056
Resource: Fiji (RRID:SCR_002285)
Curator: @Naa003
SciCrunch record: RRID:SCR_002285
UAS-Syp-RNAi
DOI: 10.7554/eLife.48056
Resource: (FlyBase Cat# FBst0459886,RRID:FlyBase_FBst0459886)
Curator: @Naa003
SciCrunch record: RRID:FlyBase_FBst0459886
anti-Rat, DyLight405 (Goat)
DOI: 10.7554/eLife.48056
Resource: (Jackson ImmunoResearch Labs Cat# 112-475-167, RRID:AB_2338314)
Curator: @Naa003
SciCrunch record: RRID:AB_2338314
anti-mouse, Alexa647 (Donkey)
DOI: 10.7554/eLife.48056
Resource: (Jackson ImmunoResearch Labs Cat# 715-605-151, RRID:AB_2340863)
Curator: @Naa003
SciCrunch record: RRID:AB_2340863
Graphpad Prism
DOI: 10.7554/eLife.48648
Resource: GraphPad Prism (RRID:SCR_002798)
Curator: @Naa003
SciCrunch record: RRID:SCR_002798
Adobe Photoshop
DOI: 10.7554/eLife.48648
Resource: Adobe Photoshop (RRID:SCR_014199)
Curator: @Naa003
SciCrunch record: RRID:SCR_014199
ImageJ
DOI: 10.7554/eLife.48648
Resource: ImageJ (RRID:SCR_003070)
Curator: @Naa003
SciCrunch record: RRID:SCR_003070
Anti-parvalbumin (mouse polyclonal)
DOI: 10.7554/eLife.48648
Resource: (Millipore Cat# MAB1572, RRID:AB_2174013)
Curator: @Naa003
SciCrunch record: RRID:AB_2174013
MATLAB
DOI: 10.7554/eLife.48562
Resource: MATLAB (RRID:SCR_001622)
Curator: @Naa003
SciCrunch record: RRID:SCR_001622
FIJI
DOI: 10.7554/eLife.48562
Resource: Fiji (RRID:SCR_002285)
Curator: @Naa003
SciCrunch record: RRID:SCR_002285
Anti-FLAG (rabbit monoclonal)
DOI: 10.7554/eLife.48562
Resource: (Sigma-Aldrich Cat# F7425, RRID:AB_439687)
Curator: @Naa003
SciCrunch record: RRID:AB_439687
FlowJo
DOI: 10.7554/eLife.49044
Resource: FlowJo (RRID:SCR_008520)
Curator: @Naa003
SciCrunch record: RRID:SCR_008520
FACSDiva
DOI: 10.7554/eLife.49044
Resource: BD FACSDiva Software (RRID:SCR_001456)
Curator: @Naa003
SciCrunch record: RRID:SCR_001456
MassHunter
DOI: 10.7554/eLife.49044
Resource: Agilent Masshunter Quantitative Analysis software (RRID:SCR_015040)
Curator: @Naa003
SciCrunch record: RRID:SCR_015040
Xenbase
DOI: 10.7554/eLife.49044
Resource: Xenbase (RRID:SCR_003280)
Curator: @Naa003
SciCrunch record: RRID:SCR_003280
HTSeq-count
DOI: 10.7554/eLife.49044
Resource: htseq-count (RRID:SCR_011867)
Curator: @Naa003
SciCrunch record: RRID:SCR_011867
WebGestalt
DOI: 10.7554/eLife.49044
Resource: WebGestalt: WEB-based GEne SeT AnaLysis Toolkit (RRID:SCR_006786)
Curator: @Naa003
SciCrunch record: RRID:SCR_006786
TopHat
DOI: 10.7554/eLife.49044
Resource: TopHat (RRID:SCR_013035)
Curator: @Naa003
SciCrunch record: RRID:SCR_013035
PANTHER
DOI: 10.7554/eLife.49044
Resource: PANTHER (RRID:SCR_004869)
Curator: @Naa003
SciCrunch record: RRID:SCR_004869
DESeq2
DOI: 10.7554/eLife.49044
Resource: DESeq2 (RRID:SCR_015687)
Curator: @Naa003
SciCrunch record: RRID:SCR_015687
STAR
DOI: 10.7554/eLife.49044
Resource: STAR (RRID:SCR_015899)
Curator: @Naa003
SciCrunch record: RRID:SCR_015899
FastQC
DOI: 10.7554/eLife.49044
Resource: FastQC (RRID:SCR_014583)
Curator: @Naa003
SciCrunch record: RRID:SCR_014583
bcl2fastq
DOI: 10.7554/eLife.49044
Resource: bcl2fastq (RRID:SCR_015058)
Curator: @Naa003
SciCrunch record: RRID:SCR_015058
HRP-coupled goat polyclonal anti mouse IgG
DOI: 10.7554/eLife.49044
Resource: (Jackson ImmunoResearch Labs Cat# 115-035-146, RRID:AB_2307392)
Curator: @Naa003
SciCrunch record: RRID:AB_2307392
HRP-coupled goat polylonal anti rabbit IgG
DOI: 10.7554/eLife.49044
Resource: (Jackson ImmunoResearch Labs Cat# 111-035-144, RRID:AB_2307391)
Curator: @Naa003
SciCrunch record: RRID:AB_2307391
rabbit polyclonal anti-Caspase-7
DOI: 10.7554/eLife.49044
Resource: (Cell Signaling Technology Cat# 9492, RRID:AB_2228313)
Curator: @Naa003
SciCrunch record: RRID:AB_2228313
rabbit polyclonal anti-Caspase-3
DOI: 10.7554/eLife.49044
Resource: (Cell Signaling Technology Cat# 9662, RRID:AB_331439)
Curator: @Naa003
SciCrunch record: RRID:AB_331439
rabbit polyclonal anti-TDG
DOI: 10.7554/eLife.49044
Resource: (Active Motif Cat# 61437, RRID:AB_2793636)
Curator: @Naa003
SciCrunch record: RRID:AB_2793636
rabbit polyclonal anti-histone H3 (Ser10)
DOI: 10.7554/eLife.49044
Resource: (Millipore Cat# 06-570, RRID:AB_310177)
Curator: @Naa003
SciCrunch record: RRID:AB_310177
rabbit polyclonal anti-histone H3
DOI: 10.7554/eLife.49044
Resource: (Abcam Cat# ab1791, RRID:AB_302613)
Curator: @Naa003
SciCrunch record: RRID:AB_302613
mouse monoclonal anti-p53 (X77)
DOI: 10.7554/eLife.49044
Resource: (Thermo Fisher Scientific Cat# MA1-12549, RRID:AB_1077421)
Curator: @Naa003
SciCrunch record: RRID:AB_1077421
rabbit polyclonal anti-phospho-Chk1 (Ser345)
DOI: 10.7554/eLife.49044
Resource: (Cell Signaling Technology Cat# 2341, RRID:AB_330023)
Curator: @Naa003
SciCrunch record: RRID:AB_330023
rabbit polyclonal anti-APE1
DOI: 10.7554/eLife.49044
Resource: (Abcam Cat# ab137708, RRID:AB_2732912)
Curator: @Naa003
SciCrunch record: RRID:AB_2732912
rabbit polyclonal anti-NEIL2
DOI: 10.7554/eLife.49044
Resource: (Abcam Cat# ab124106, RRID:AB_10975153)
Curator: @Naa003
SciCrunch record: RRID:AB_10975153
rabbit polyclonal anti-NEIL1
DOI: 10.7554/eLife.49044
Resource: (Abcam Cat# ab21337, RRID:AB_1952225)
Curator: @Naa003
SciCrunch record: RRID:AB_1952225
mouse monoclonal anti-alpha tubulin
DOI: 10.7554/eLife.49044
Resource: (Sigma-Aldrich Cat# T5168, RRID:AB_477579)
Curator: @Naa003
SciCrunch record: RRID:AB_477579
E14TG2a
DOI: 10.7554/eLife.49044
Resource: (ECACC Cat# 08021401, RRID:CVCL_9108)
Curator: @Naa003
SciCrunch record: RRID:CVCL_9108
Pannoramic Viewer
DOI: 10.7554/eLife.46592
Resource: Pannoramic Viewer (RRID:SCR_014424)
Curator: @Naa003
SciCrunch record: RRID:SCR_014424
GraphPad Prism
DOI: 10.7554/eLife.41239
Resource: GraphPad Prism (RRID:SCR_002798)
Curator: @Naa003
SciCrunch record: RRID:SCR_002798
Xcalibur
DOI: 10.7554/eLife.41239
Resource: Thermo Xcalibur (RRID:SCR_014593)
Curator: @Naa003
SciCrunch record: RRID:SCR_014593
FlowJo
DOI: 10.7554/eLife.41239
Resource: FlowJo (RRID:SCR_008520)
Curator: @Naa003
SciCrunch record: RRID:SCR_008520
MATLAB
DOI: 10.7554/eLife.45909
Resource: MATLAB (RRID:SCR_001622)
Curator: @Naa003
SciCrunch record: RRID:SCR_001622
Igor pro
DOI: 10.7554/eLife.45909
Resource: IGOR Pro (RRID:SCR_000325)
Curator: @Naa003
SciCrunch record: RRID:SCR_000325
LabVIEW
DOI: 10.7554/eLife.45909
Resource: LabView (RRID:SCR_014325)
Curator: @Naa003
SciCrunch record: RRID:SCR_014325
GUSSI
DOI: 10.7554/eLife.47650
Resource: GUSSI (RRID:SCR_014962)
Curator: @Naa003
SciCrunch record: RRID:SCR_014962
μManager
DOI: 10.7554/eLife.47650
Resource: ?Manager (RRID:SCR_016865)
Curator: @Naa003
SciCrunch record: RRID:SCR_016865
Fiji
DOI: 10.7554/eLife.47650
Resource: Fiji (RRID:SCR_002285)
Curator: @Naa003
SciCrunch record: RRID:SCR_002285
Graphpad prism
DOI: 10.7554/eLife.47650
Resource: GraphPad Prism (RRID:SCR_002798)
Curator: @Naa003
SciCrunch record: RRID:SCR_002798
Phenix.refine
DOI: 10.7554/eLife.47650
Resource: Phenix.refine (RRID:SCR_016736)
Curator: @Naa003
SciCrunch record: RRID:SCR_016736
Coot
DOI: 10.7554/eLife.47650
Resource: Coot (RRID:SCR_014222)
Curator: @Naa003
SciCrunch record: RRID:SCR_014222
RELION
DOI: 10.7554/eLife.47650
Resource: RELION (RRID:SCR_016274)
Curator: @Naa003
SciCrunch record: RRID:SCR_016274
EMAN2
DOI: 10.7554/eLife.47650
Resource: EMAN (RRID:SCR_016867)
Curator: @Naa003
SciCrunch record: RRID:SCR_016867
GCTF
DOI: 10.7554/eLife.47650
Resource: GCTF (RRID:SCR_016500)
Curator: @Naa003
SciCrunch record: RRID:SCR_016500
Goat anti-Rabbit IgG H and L (Alexa Fluor 488)
DOI: 10.7554/eLife.47650
Resource: (Thermo Fisher Scientific Cat# A-11034, RRID:AB_2576217)
Curator: @Naa003
SciCrunch record: RRID:AB_2576217
Bowtie
DOI: 10.7554/eLife.48469
Resource: Bowtie (RRID:SCR_005476)
Curator: @Naa003
SciCrunch record: RRID:SCR_005476
FlowJo
DOI: 10.7554/eLife.48469
Resource: FlowJo (RRID:SCR_008520)
Curator: @Naa003
SciCrunch record: RRID:SCR_008520
Prism
DOI: 10.7554/eLife.48469
Resource: GraphPad Prism (RRID:SCR_002798)
Curator: @Naa003
SciCrunch record: RRID:SCR_002798
FLAG (mouse, monoclonal)
DOI: 10.7554/eLife.48469
Resource: (Sigma-Aldrich Cat# F1804, RRID:AB_262044)
Curator: @Naa003
SciCrunch record: RRID:AB_262044
GFP (rabbit, polyclonal)
DOI: 10.7554/eLife.48469
Resource: (GeneTex Cat# GTX113617, RRID:AB_1950371)
Curator: @Naa003
SciCrunch record: RRID:AB_1950371
Dengue virus NS4B protein (rabbit, polyclonal)
DOI: 10.7554/eLife.48469
Resource: (GeneTex Cat# GTX124250, RRID:AB_11176998)
Curator: @Naa003
SciCrunch record: RRID:AB_11176998
Dengue virus NS3 protein (mouse, monoclonal)
DOI: 10.7554/eLife.48469
Resource: (GeneTex Cat# GTX629477, RRID:AB_2801283)
Curator: @Naa003
SciCrunch record: RRID:AB_2801283
Dengue virus NS2B (rabbit, polyclonal)
DOI: 10.7554/eLife.48469
Resource: (GeneTex Cat# GTX124246, RRID:AB_11170698)
Curator: @Naa003
SciCrunch record: RRID:AB_11170698
Dengue virus capsid protein (rabbit, polyclonal)
DOI: 10.7554/eLife.48469
Resource: (GeneTex Cat# GTX103343, RRID:AB_1240697)
Curator: @Naa003
SciCrunch record: RRID:AB_1240697
EMC2/TTC35 (rabbit, polyclonal)
DOI: 10.7554/eLife.48469
Resource: (Proteintech Cat# 25443-1-AP, RRID:AB_2750836)
Curator: @Naa003
SciCrunch record: RRID:AB_2750836
GAPDH (mouse, monoclonal)
DOI: 10.7554/eLife.48469
Resource: (Santa Cruz Biotechnology Cat# sc-32233, RRID:AB_627679)
Curator: @Naa003
SciCrunch record: RRID:AB_627679
P84 (mouse, monoclonal)
DOI: 10.7554/eLife.48469
Resource: (GeneTex Cat# GTX70220, RRID:AB_372637)
Curator: @Naa003
SciCrunch record: RRID:AB_372637
GraphPad Prism
DOI: 10.7554/eLife.46089
Resource: GraphPad Prism (RRID:SCR_002798)
Curator: @Naa003
SciCrunch record: RRID:SCR_002798
Fiji
DOI: 10.7554/eLife.46089
Resource: Fiji (RRID:SCR_002285)
Curator: @Naa003
SciCrunch record: RRID:SCR_002285
Illustrator
DOI: 10.7554/eLife.46089
Resource: Adobe Illustrator (RRID:SCR_010279)
Curator: @Naa003
SciCrunch record: RRID:SCR_010279
ImageJ
DOI: 10.7554/eLife.46089
Resource: ImageJ (RRID:SCR_003070)
Curator: @Naa003
SciCrunch record: RRID:SCR_003070
BWA
DOI: 10.7554/eLife.48220
Resource: BWA (RRID:SCR_010910)
Curator: @Naa003
SciCrunch record: RRID:SCR_010910
vcftools
DOI: 10.7554/eLife.48220
Resource: VCFtools (RRID:SCR_001235)
Curator: @Naa003
SciCrunch record: RRID:SCR_001235
GraphPad Prism
DOI: 10.7554/eLife.47972
Resource: GraphPad Prism (RRID:SCR_002798)
Curator: @Naa003
SciCrunch record: RRID:SCR_002798
AxoGraph
DOI: 10.7554/eLife.47972
Resource: Axograph (RRID:SCR_014284)
Curator: @Naa003
SciCrunch record: RRID:SCR_014284
ImageJ
DOI: 10.7554/eLife.47972
Resource: ImageJ (RRID:SCR_003070)
Curator: @Naa003
SciCrunch record: RRID:SCR_003070
Fiji
DOI: 10.7554/eLife.47972
Resource: Fiji (RRID:SCR_002285)
Curator: @Naa003
SciCrunch record: RRID:SCR_002285
Xcalibur
DOI: 10.7554/eLife.47990
Resource: Thermo Xcalibur (RRID:SCR_014593)
Curator: @Naa003
SciCrunch record: RRID:SCR_014593
MassHunter
DOI: 10.7554/eLife.47990
Resource: Agilent Masshunter Quantitative Analysis software (RRID:SCR_015040)
Curator: @Naa003
SciCrunch record: RRID:SCR_015040
mouse monoclonal) anti-FLAG
DOI: 10.7554/eLife.48119
Resource: (Sigma-Aldrich Cat# F3165, RRID:AB_259529)
Curator: @Naa003
SciCrunch record: RRID:AB_259529
mouse monoclonal) anti-DYKDDDDK
DOI: 10.7554/eLife.48119
Resource: (Thermo Fisher Scientific Cat# MA1-91878, RRID:AB_1957945)
Curator: @Naa003
SciCrunch record: RRID:AB_1957945
mouse monoclonal) anti-HA
DOI: 10.7554/eLife.48119
Resource: (Thermo Fisher Scientific Cat# 32-6700, RRID:AB_2533092)
Curator: @Naa003
SciCrunch record: RRID:AB_2533092
A549
DOI: 10.7554/eLife.48119
Resource: (CCLV Cat# CCLV-RIE 1035, RRID:CVCL_0023)
Curator: @Naa003
SciCrunch record: RRID:CVCL_0023
Hela
DOI: 10.7554/eLife.48119
Resource: (BCRC Cat# 60005, RRID:CVCL_0030)
Curator: @Naa003
SciCrunch record: RRID:CVCL_0030
MDA-MB-231
DOI: 10.7554/eLife.48119
Resource: (ATCC Cat# CRM-HTB-26, RRID:CVCL_0062)
Curator: @Naa003
SciCrunch record: RRID:CVCL_0062
MCF-7
DOI: 10.7554/eLife.48119
Resource: (NCI-DTP Cat# MCF7, RRID:CVCL_0031)
Curator: @Naa003
SciCrunch record: RRID:CVCL_0031
Colo-205
DOI: 10.7554/eLife.48119
Resource: (RCB Cat# RCB2127, RRID:CVCL_0218)
Curator: @Naa003
SciCrunch record: RRID:CVCL_0218
Origin
DOI: 10.7554/eLife.47804
Resource: Origin (RRID:SCR_014212)
Curator: @Naa003
SciCrunch record: RRID:SCR_014212
Origin
DOI: 10.7554/eLife.47804
Resource: Origin (RRID:SCR_014212)
Curator: @Naa003
SciCrunch record: RRID:SCR_014212
Imaris
DOI: 10.7554/eLife.47460
Resource: Imaris (RRID:SCR_007370)
Curator: @Naa003
SciCrunch record: RRID:SCR_007370
Adobe Photoshop
DOI: 10.7554/eLife.47460
Resource: Adobe Photoshop (RRID:SCR_014199)
Curator: @Naa003
SciCrunch record: RRID:SCR_014199
Leica Application Suite
DOI: 10.7554/eLife.47460
Resource: Leica Application Suite (RRID:SCR_016555)
Curator: @Naa003
SciCrunch record: RRID:SCR_016555
ZEN
DOI: 10.7554/eLife.47460
Resource: ZEN Digital Imaging for Light Microscopy (RRID:SCR_013672)
Curator: @Naa003
SciCrunch record: RRID:SCR_013672
R
DOI: 10.7554/eLife.47460
Resource: R Project for Statistical Computing (RRID:SCR_001905)
Curator: @Naa003
SciCrunch record: RRID:SCR_001905
ggplot2
DOI: 10.7554/eLife.47460
Resource: ggplot2 (RRID:SCR_014601)
Curator: @Naa003
SciCrunch record: RRID:SCR_014601
pheatmap
DOI: 10.7554/eLife.47460
Resource: pheatmap (RRID:SCR_016418)
Curator: @Naa003
SciCrunch record: RRID:SCR_016418
Fiji
DOI: 10.7554/eLife.47460
Resource: Fiji (RRID:SCR_002285)
Curator: @Naa003
SciCrunch record: RRID:SCR_002285
SPSS
DOI: 10.7554/eLife.43243
Resource: SPSS (RRID:SCR_002865)
Curator: @Naa003
SciCrunch record: RRID:SCR_002865
Excel
DOI: 10.7554/eLife.43243
Resource: Microsoft Excel (RRID:SCR_016137)
Curator: @Naa003
SciCrunch record: RRID:SCR_016137
MATLAB
DOI: 10.7554/eLife.43243
Resource: MATLAB (RRID:SCR_001622)
Curator: @Naa003
SciCrunch record: RRID:SCR_001622
Prism
DOI: 10.7554/eLife.43243
Resource: GraphPad Prism (RRID:SCR_002798)
Curator: @Naa003
SciCrunch record: RRID:SCR_002798
NeuroMatic
DOI: 10.7554/eLife.43243
Resource: NeuroMatic (RRID:SCR_004186)
Curator: @Naa003
SciCrunch record: RRID:SCR_004186
IGOR Pro
DOI: 10.7554/eLife.43243
Resource: IGOR Pro (RRID:SCR_000325)
Curator: @Naa003
SciCrunch record: RRID:SCR_000325
GraphPad Prism
DOI: 10.7554/eLife.48834
Resource: GraphPad Prism (RRID:SCR_002798)
Curator: @Naa003
SciCrunch record: RRID:SCR_002798
R
DOI: 10.7554/eLife.48834
Resource: R Project for Statistical Computing (RRID:SCR_001905)
Curator: @Naa003
SciCrunch record: RRID:SCR_001905
ImageJ
DOI: 10.7554/eLife.48834
Resource: ImageJ (RRID:SCR_003070)
Curator: @Naa003
SciCrunch record: RRID:SCR_003070
Photoshop
DOI: 10.7554/eLife.48834
Resource: Adobe Photoshop (RRID:SCR_014199)
Curator: @Naa003
SciCrunch record: RRID:SCR_014199
FIJI
DOI: 10.7554/eLife.48834
Resource: Fiji (RRID:SCR_002285)
Curator: @Naa003
SciCrunch record: RRID:SCR_002285
FITC-conjugated anti-rabbit IgG
DOI: 10.7554/eLife.48834
Resource: (Jackson ImmunoResearch Labs Cat# 111-095-003, RRID:AB_2337972)
Curator: @Naa003
SciCrunch record: RRID:AB_2337972
AlexaFluor 647-conjugated anti-mouse IgG
DOI: 10.7554/eLife.48834
Resource: (Molecular Probes Cat# A-31571, RRID:AB_162542)
Curator: @Naa003
SciCrunch record: RRID:AB_162542
AlexaFluor 647-conjugated anti-rabbit IgG
DOI: 10.7554/eLife.48834
Resource: (Thermo Fisher Scientific Cat# A-31573, RRID:AB_2536183)
Curator: @Naa003
SciCrunch record: RRID:AB_2536183
AlexaFluor 488-conjugated anti-rabbit IgG
DOI: 10.7554/eLife.48834
Resource: (Thermo Fisher Scientific Cat# A-11008, RRID:AB_143165)
Curator: @Naa003
SciCrunch record: RRID:AB_143165
AlexaFluor 488-conjugated anti-goat IgG
DOI: 10.7554/eLife.48834
Resource: (Thermo Fisher Scientific Cat# A-11055, RRID:AB_2534102)
Curator: @Naa003
SciCrunch record: RRID:AB_2534102
anti-rabbit
DOI: 10.7554/eLife.48834
Resource: (Jackson ImmunoResearch Labs Cat# 111-035-144, RRID:AB_2307391)
Curator: @Naa003
SciCrunch record: RRID:AB_2307391
anti-mouse
DOI: 10.7554/eLife.48834
Resource: (Yeasen Biotech Cat# 33201ES60, RRID:AB_10015289)
Curator: @Naa003
SciCrunch record: RRID:AB_10015289
Anti-goat
DOI: 10.7554/eLife.48834
Resource: (Jackson ImmunoResearch Labs Cat# 305-035-003, RRID:AB_2339400)
Curator: @Naa003
SciCrunch record: RRID:AB_2339400
anti-APOA-I (rabbit polyclonal)
DOI: 10.7554/eLife.48834
Resource: (Abcam Cat# ab64308, RRID:AB_1309957)
Curator: @Naa003
SciCrunch record: RRID:AB_1309957
UCSF Chimera
DOI: 10.7554/eLife.46845
Resource: UCSF Chimera (RRID:SCR_004097)
Curator: @Naa003
SciCrunch record: RRID:SCR_004097
Gctf
DOI: 10.7554/eLife.46845
Resource: GCTF (RRID:SCR_016500)
Curator: @Naa003
SciCrunch record: RRID:SCR_016500
Fiji
DOI: 10.7554/eLife.46845
Resource: Fiji (RRID:SCR_002285)
Curator: @Naa003
SciCrunch record: RRID:SCR_002285
IMOD
DOI: 10.7554/eLife.46845
Resource: IMOD (RRID:SCR_003297)
Curator: @Naa003
SciCrunch record: RRID:SCR_003297
SerialEM
DOI: 10.7554/eLife.46845
Resource: SerialEM (RRID:SCR_017293)
Curator: @Naa003
SciCrunch record: RRID:SCR_017293
GraphPad Prism
DOI: 10.7554/eLife.50231
Resource: GraphPad Prism (RRID:SCR_002798)
Curator: @Naa003
SciCrunch record: RRID:SCR_002798
Enrichr
DOI: 10.7554/eLife.50231
Resource: Enrichr (RRID:SCR_001575)
Curator: @Naa003
SciCrunch record: RRID:SCR_001575
ImageJ
DOI: 10.7554/eLife.50231
Resource: ImageJ (RRID:SCR_003070)
Curator: @Naa003
SciCrunch record: RRID:SCR_003070
pGEM-3z/601
DOI: 10.7554/eLife.48281
Resource: RRID:Addgene_26656
Curator: @Naa003
SciCrunch record: RRID:Addgene_26656
Matlab
DOI: 10.7554/eLife.46675
Resource: MATLAB (RRID:SCR_001622)
Curator: @Naa003
SciCrunch record: RRID:SCR_001622
StereoInvestigator
DOI: 10.7554/eLife.46675
Resource: Stereo Investigator (RRID:SCR_002526)
Curator: @Naa003
SciCrunch record: RRID:SCR_002526
Photoshop
DOI: 10.7554/eLife.46675
Resource: Adobe Photoshop (RRID:SCR_014199)
Curator: @Naa003
SciCrunch record: RRID:SCR_014199
ImageJ
DOI: 10.7554/eLife.46675
Resource: ImageJ (RRID:SCR_003070)
Curator: @Naa003
SciCrunch record: RRID:SCR_003070
Offline Sorter
DOI: 10.7554/eLife.49995
Resource: Offline Sorter (RRID:SCR_000012)
Curator: @Naa003
SciCrunch record: RRID:SCR_000012
pClamp
DOI: 10.7554/eLife.49995
Resource: pClamp (RRID:SCR_011323)
Curator: @Naa003
SciCrunch record: RRID:SCR_011323
ZEN
DOI: 10.7554/eLife.49995
Resource: ZEN Digital Imaging for Light Microscopy (RRID:SCR_013672)
Curator: @Naa003
SciCrunch record: RRID:SCR_013672
ImageJ
DOI: 10.7554/eLife.49995
Resource: ImageJ (RRID:SCR_003070)
Curator: @Naa003
SciCrunch record: RRID:SCR_003070
CorelDRAW
DOI: 10.7554/eLife.49995
Resource: CorelDRAW Graphics Suite (RRID:SCR_014235)
Curator: @Naa003
SciCrunch record: RRID:SCR_014235
Neurolucida
DOI: 10.7554/eLife.49995
Resource: Neurolucida (RRID:SCR_001775)
Curator: @Naa003
SciCrunch record: RRID:SCR_001775
Prism
DOI: 10.7554/eLife.49995
Resource: GraphPad Prism (RRID:SCR_002798)
Curator: @Naa003
SciCrunch record: RRID:SCR_002798
Matlab
DOI: 10.7554/eLife.49995
Resource: MATLAB (RRID:SCR_001622)
Curator: @Naa003
SciCrunch record: RRID:SCR_001622
anti-chicken Alexa Fluor 488 (host: donkey, polyclonal)
DOI: 10.7554/eLife.49995
Resource: (Jackson ImmunoResearch Labs Cat# 703-545-155, RRID:AB_2340375)
Curator: @Naa003
SciCrunch record: RRID:AB_2340375
anti-rabbit Cy5 (host: donkey, polyclonal)
DOI: 10.7554/eLife.49995
Resource: (Jackson ImmunoResearch Labs Cat# 711-175-152, RRID:AB_2340607)
Curator: @Naa003
SciCrunch record: RRID:AB_2340607
anti-rabbit Cy3 (host: donkey, polyclonal)
DOI: 10.7554/eLife.49995
Resource: (Jackson ImmunoResearch Labs Cat# 711-165-152, RRID:AB_2307443)
Curator: @Naa003
SciCrunch record: RRID:AB_2307443
anti-rabbit Alexa Fluor 488 (host: donkey, polyclonal)
DOI: 10.7554/eLife.49995
Resource: (Jackson ImmunoResearch Labs Cat# 711-545-152, RRID:AB_2313584)
Curator: @Naa003
SciCrunch record: RRID:AB_2313584
anti-mouse Cy5 (host: donkey, polyclonal)
DOI: 10.7554/eLife.49995
Resource: (Jackson ImmunoResearch Labs Cat# 715-175-151, RRID:AB_2340820)
Curator: @Naa003
SciCrunch record: RRID:AB_2340820
anti-mouse Cy3 (host: donkey, polyclonal)
DOI: 10.7554/eLife.49995
Resource: (Jackson ImmunoResearch Labs Cat# 715-165-151, RRID:AB_2315777)
Curator: @Naa003
SciCrunch record: RRID:AB_2315777
anti-mouse Alexa Fluor 488 (host: donkey, polyclonal)
DOI: 10.7554/eLife.49995
Resource: (Jackson ImmunoResearch Labs Cat# 715-545-151, RRID:AB_2341099)
Curator: @Naa003
SciCrunch record: RRID:AB_2341099
anti-substance P mouse monoclonal antibody
DOI: 10.7554/eLife.49995
Resource: (Abcam Cat# ab14184, RRID:AB_300971)
Curator: @Naa003
SciCrunch record: RRID:AB_300971
anti-GFP chicken polyclonal antibody
DOI: 10.7554/eLife.49995
Resource: (Novus Cat# NB100-1614, RRID:AB_10001164)
Curator: @Naa003
SciCrunch record: RRID:AB_10001164
anti-NeuN rabbit polyclonal antibody
DOI: 10.7554/eLife.49995
Resource: (Abcam Cat# ab104225, RRID:AB_10711153)
Curator: @Naa003
SciCrunch record: RRID:AB_10711153
anti-tyrosine hydroxylase (TH) mouse monoclonal antibody
DOI: 10.7554/eLife.49995
Resource: (Millipore Cat# MAB318, RRID:AB_2201528)
Curator: @Naa003
SciCrunch record: RRID:AB_2201528
Primer-BLAST
DOI: 10.7554/eLife.42951
Resource: Primer-BLAST (RRID:SCR_003095)
Curator: @Naa003
SciCrunch record: RRID:SCR_003095
β-actin, mouse monoclonal
DOI: 10.7554/eLife.42951
Resource: (Santa Cruz Biotechnology Cat# sc-47778 HRP, RRID:AB_2714189)
Curator: @Naa003
SciCrunch record: RRID:AB_2714189
NFκB p65, rabbit polyclonal
DOI: 10.7554/eLife.42951
Resource: (Cell Signaling Technology Cat# 3034, RRID:AB_330561)
Curator: @Naa003
SciCrunch record: RRID:AB_330561
Phospho-NFκB p65 (Ser536), rabbit monoclonal
DOI: 10.7554/eLife.42951
Resource: (Cell Signaling Technology Cat# 3033, RRID:AB_331284)
Curator: @Naa003
SciCrunch record: RRID:AB_331284
ERK1/2, rabbit polyclonal
DOI: 10.7554/eLife.42951
Resource: (Cell Signaling Technology Cat# 9102, RRID:AB_330744)
Curator: @Naa003
SciCrunch record: RRID:AB_330744
Phospho-p44/42 MAPK (Erk1/2) (Thr202/Tyr204) (D13.14.4E) XP Rabbit mAb
DOI: 10.7554/eLife.42951
Resource: (Cell Signaling Technology Cat# 4370, RRID:AB_2315112)
Curator: @Naa003
SciCrunch record: RRID:AB_2315112
p38, rabbit polyclonal
DOI: 10.7554/eLife.42951
Resource: (Cell Signaling Technology Cat# 9212, RRID:AB_330713)
Curator: @Naa003
SciCrunch record: RRID:AB_330713
Phospho-p38 (Thr180/Tyr182), rabbit polyclonal
DOI: 10.7554/eLife.42951
Resource: (Cell Signaling Technology Cat# 9211, RRID:AB_331641)
Curator: @Naa003
SciCrunch record: RRID:AB_331641
Keap1 (E-20), goat polyclonal
DOI: 10.7554/eLife.42951
Resource: (Santa Cruz Biotechnology Cat# sc-15246, RRID:AB_2132638)
Curator: @Naa003
SciCrunch record: RRID:AB_2132638
Nrf2 (C-20), rabbit polyclonal
DOI: 10.7554/eLife.42951
Resource: (Santa Cruz Biotechnology Cat# sc-722, RRID:AB_2108502)
Curator: @Naa003
SciCrunch record: RRID:AB_2108502
Nrf2 (H-300), rabbit polyclonal
DOI: 10.7554/eLife.42951
Resource: (Santa Cruz Biotechnology Cat# sc-13032, RRID:AB_2263168)
Curator: @Naa003
SciCrunch record: RRID:AB_2263168
RAW264.7
DOI: 10.7554/eLife.42951
Resource: (ATCC Cat# TIB-71, RRID:CVCL_0493)
Curator: @Naa003
SciCrunch record: RRID:CVCL_0493
LyzMCre
DOI: 10.7554/eLife.42951
Resource: (IMSR Cat# JAX_018956,RRID:IMSR_JAX:018956)
Curator: @Naa003
SciCrunch record: RRID:IMSR_JAX:018956
Fasttree
DOI: 10.7554/eLife.49662
Resource: FastTree (RRID:SCR_015501)
Curator: @Naa003
SciCrunch record: RRID:SCR_015501
Trinity
DOI: 10.7554/eLife.49662
Resource: Trinity (RRID:SCR_013048)
Curator: @Naa003
SciCrunch record: RRID:SCR_013048
cutadapt
DOI: 10.7554/eLife.49662
Resource: cutadapt (RRID:SCR_011841)
Curator: @Naa003
SciCrunch record: RRID:SCR_011841
Photoshop
DOI: 10.7554/eLife.47327
Resource: Adobe Photoshop (RRID:SCR_014199)
Curator: @Naa003
SciCrunch record: RRID:SCR_014199
Slidebook
DOI: 10.7554/eLife.47327
Resource: SlideBook (RRID:SCR_014300)
Curator: @Naa003
SciCrunch record: RRID:SCR_014300
Image Scope
DOI: 10.7554/eLife.47327
Resource: ImageScope (RRID:SCR_014311)
Curator: @Naa003
SciCrunch record: RRID:SCR_014311
UniProtKB
DOI: 10.7554/eLife.47327
Resource: UniProtKB (RRID:SCR_004426)
Curator: @Naa003
SciCrunch record: RRID:SCR_004426
MaxQuant
DOI: 10.7554/eLife.47327
Resource: MaxQuant (RRID:SCR_014485)
Curator: @Naa003
SciCrunch record: RRID:SCR_014485
Gene Set Enrichment Analysis
DOI: 10.7554/eLife.47327
Resource: Gene Set Enrichment Analysis (RRID:SCR_003199)
Curator: @Naa003
SciCrunch record: RRID:SCR_003199
DESeq2
DOI: 10.7554/eLife.47327
Resource: DESeq2 (RRID:SCR_015687)
Curator: @Naa003
SciCrunch record: RRID:SCR_015687
ClusterProfiler
DOI: 10.7554/eLife.47327
Resource: clusterProfiler (RRID:SCR_016884)
Curator: @Naa003
SciCrunch record: RRID:SCR_016884
TopHat2
DOI: 10.7554/eLife.47327
Resource: TopHat (RRID:SCR_013035)
Curator: @Naa003
SciCrunch record: RRID:SCR_013035
Integrative Genomics Viewer
DOI: 10.7554/eLife.47327
Resource: Integrative Genomics Viewer (RRID:SCR_011793)
Curator: @Naa003
SciCrunch record: RRID:SCR_011793
ANNOVAR
DOI: 10.7554/eLife.47327
Resource: ANNOVAR (RRID:SCR_012821)
Curator: @Naa003
SciCrunch record: RRID:SCR_012821
SAMtools
DOI: 10.7554/eLife.47327
Resource: Samtools (RRID:SCR_002105)
Curator: @Naa003
SciCrunch record: RRID:SCR_002105
GATK
DOI: 10.7554/eLife.47327
Resource: GATK (RRID:SCR_001876)
Curator: @Naa003
SciCrunch record: RRID:SCR_001876
BWA MEM
DOI: 10.7554/eLife.47327
Resource: BWA (RRID:SCR_010910)
Curator: @Naa003
SciCrunch record: RRID:SCR_010910
Prism
DOI: 10.7554/eLife.47327
Resource: GraphPad Prism (RRID:SCR_002798)
Curator: @Naa003
SciCrunch record: RRID:SCR_002798
CellQuest Pro
DOI: 10.7554/eLife.47327
Resource: BD CellQuest Pro (RRID:SCR_014489)
Curator: @Naa003
SciCrunch record: RRID:SCR_014489
ModFit LT
DOI: 10.7554/eLife.47327
Resource: ModFit LT (RRID:SCR_016106)
Curator: @Naa003
SciCrunch record: RRID:SCR_016106