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    Recursive splicing discovery using lariats in total RNA sequencing
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    biorxiv.org/content/10.1101/2022.12.22.521701v1
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    Exploratory Meta-Analysis of Hypoxic Transcriptomes Using a Precise Transcript Reference Sequence Set
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    biorxiv.org/content/10.1101/2022.05.01.489280v2
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    VEGFR3 modulates brain microvessel branching in a mouse model of 22q11.2 deletion syndrome
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    biorxiv.org/content/10.1101/2022.03.16.484566v1
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    Telescoping bimodal latent Dirichlet allocation to identify expression QTLs across tissues
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    1. EMBOpress 26 May 2023

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    biorxiv.org/content/10.1101/2021.10.27.466156v2
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    RAS and PP2A activities converge on epigenetic gene regulation
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    biorxiv.org/content/10.1101/2022.05.11.491459v1
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    Functional substitutions of amino acids that differ between GDF11 and GDF8 impact skeletal development and skeletal muscle.
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    biorxiv.org/content/10.1101/2022.05.09.491247v1
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    Gapless provides combined scaffolding, gap filling and assembly correction with long reads
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    biorxiv.org/content/10.1101/2022.03.08.483466v2
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    Z-Flipon Variants reveal the many roles of Z-DNA and Z-RNA in health and disease
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    biorxiv.org/lookup/doi/10.1101/2023.01.12.523822
  10. May 2023
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    The value of genotype-specific reference for transcriptome analyses
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    1. EMBOpress 14 May 2023

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    biorxiv.org/content/10.1101/2021.09.14.460213v1
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    Genome-wide CRISPRi screening reveals regulators of Alzheimee's tau pathology shared between exosomal and vesicle-free tau seeds.
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    biorxiv.org/content/10.1101/2022.04.26.489622v1
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    Small non-coding vault RNA1-2 modulate expression of cell membrane proteins through nascent RNA silencing
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    1. EMBOpress 11 May 2023

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    biorxiv.org/content/10.1101/2022.08.12.503724v2
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    LuminoCell: a versatile and affordable luminometer platform for monitoring in-cell luciferase-based reporters
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    biorxiv.org/content/10.1101/2022.01.28.478134v1
  15. Apr 2023
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    Efficient knock-in method enabling lineage tracing in zebrafish
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    biorxiv.org/content/10.1101/2022.07.15.500272v1
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    The TUDOR domain of SMN is an H3K79me1 histone mark reader
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    biorxiv.org/content/10.1101/2022.10.06.511070v1
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    Preference of CAMSAP3 for microtubules with expanded lattice contributes to stabilization of the minus end
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    biorxiv.org/content/10.1101/2022.08.21.504720v2
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    Analysis of context-specific KRAS-effectors (sub)complexes in Caco-2 cells
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    biorxiv.org/content/10.1101/2022.08.15.503960v1
  20. Mar 2023
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    Peroxisomes contribute to intracellular calcium dynamics
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    biorxiv.org/content/10.1101/2020.09.02.279174v1
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    An extended DNA-free intranuclear compartment organizes centrosomal microtubules in Plasmodium falciparum
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    biorxiv.org/content/10.1101/2021.03.12.435157v2
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    Non-canonical miRNA-RNA base-pairing impedes tumor suppressor activity of miR-16
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    biorxiv.org/content/10.1101/2021.11.30.470499v1
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    The ADAM17 sheddase complex regulator iTAP/Frmd8 modulates inflammation, epithelial repair, and tumor growth
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    biorxiv.org/content/10.1101/2022.04.11.487842v1
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    Stepwise progression of beta-selection during T cell development as revealed by histone deacetylation inhibition
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    biorxiv.org/content/10.1101/2021.10.03.462949v4
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    Lack of peroxisomal catalase affects heat shock response in C. elegans
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    biorxiv.org/content/10.1101/2021.07.13.452156v1
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    Lineage Tracing Reveals Fate Bias and Transcriptional Memory in Human B cells
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    biorxiv.org/content/10.1101/2022.07.14.499766v2
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    Critical roles of ICOS in controlling Foxp3-expressing T follicular cell subsets during early-stage germinal center reactions
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    biorxiv.org/content/10.1101/2021.09.14.460384v2
  29. www.biorxiv.org www.biorxiv.org
    The human MRS2 magnesium binding domain is a regulatory feedback switch for channel activity.
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    biorxiv.org/content/10.1101/2022.09.27.509701v1
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    Activation and inhibition of the C-terminal kinase domain of p90 ribosomal S6 kinases
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    1. EMBOpress 09 Mar 2023

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    biorxiv.org/content/10.1101/2022.02.18.481032v1
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    Segregation of pathways leading to pexophagy
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    biorxiv.org/content/10.1101/2022.11.08.515582v1
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    New algorithms for accurate and efficient de-novo genome assembly from long DNA sequencing reads
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    biorxiv.org/content/10.1101/2022.08.30.505891v1
  33. Feb 2023
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    Adenylyl cyclase 9 is auto-stimulated by its isoform-specific carboxyl terminal domain and equipped with paradigm-switching mechanisms.
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    biorxiv.org/content/10.1101/2022.06.05.494885v3
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    Lung macrophages utilize cathepsin K-dependent phagosomal machinery to degrade intracellular collagen
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    biorxiv.org/content/10.1101/2022.05.16.492085v1
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    SorCS1 inhibits amyloid-β binding to neurexin and rescues amyloid-β-induced synaptic pathology
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    biorxiv.org/content/10.1101/2022.07.26.501499v1
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    The GET pathway serves to activate Atg32-mediated mitophagy by ER targeting of the Ppg1-Far complex
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    biorxiv.org/content/10.1101/2021.09.20.461067v1
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    Human RNA Nm-MTase FTSJ1: new tRNA targets and role in the regulation of brain-specific genes.
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    1. EMBOpress 14 Feb 2023

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    biorxiv.org/content/10.1101/2021.02.06.430044v4
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    A genome-wide CRISPR functional survey of the human phagocytosis molecular machinery
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    biorxiv.org/content/10.1101/2022.09.08.507072v1
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    Epigenetic signals that direct cell type specific interferon beta response in mouse cells
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    biorxiv.org/content/10.1101/2022.02.26.481127v1
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    Convergent evolution and horizontal gene transfer in Arctic Ocean microalgae
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    biorxiv.org/content/10.1101/2021.07.31.454568v1
  42. Jan 2023
  43. www.biorxiv.org www.biorxiv.org
    Structural and functional characterization of TraI from pKM101 reveals basis for DNA processing
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    biorxiv.org/content/10.1101/2022.06.02.494495v2
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    Membrane cholesterol regulates inhibition and substrate transport by the glycine transporter, GlyT2
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    1. EMBOpress 28 Jan 2023

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    biorxiv.org/content/10.1101/2022.08.31.506132v1
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    SMN promotes mitochondrial metabolic maturation during myogenesis by regulating the MYOD-miRNA axis.
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    1. EMBOpress 27 Jan 2023

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    biorxiv.org/content/10.1101/2022.02.13.480288v1
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    Epigenetic centromere identity is precisely maintained through DNA replication but is uniquely specified among human cells
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    biorxiv.org/content/10.1101/2022.09.07.506974v1
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    Identifying novel regulators of placental development using time series transcriptomic data and network analyses
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    1. EMBOpress 26 Jan 2023

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    biorxiv.org/content/10.1101/2022.05.17.492330v1
  48. www.biorxiv.org www.biorxiv.org
    De novo discovery of traits co-occurring with chronic obstructive pulmonary disease
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    biorxiv.org/content/10.1101/2022.07.20.500731v1
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    An isoform-specific function of Cdc42 in regulating mammalian Exo70 during axon formation
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    1. EMBOpress 24 Jan 2023

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    biorxiv.org/content/10.1101/2022.07.01.498448v1
  50. www.biorxiv.org www.biorxiv.org
    Comparative analysis of MERFISH spatial transcriptomics with bulk and single-cell RNA sequencing
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    1. EMBOpress 19 Jan 2023

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    biorxiv.org/content/10.1101/2022.03.04.483068v3
  51. www.biorxiv.org www.biorxiv.org
    A synergistic activation of RARb and RARg nuclear receptors restores cell-types specialization during stem cells differentiation by hijacking RARa-controlled program
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    1. EMBOpress 19 Jan 2023

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    biorxiv.org/content/10.1101/2022.05.31.494116v2
  52. www.biorxiv.org www.biorxiv.org
    Nuclear envelope reshaping around the vacuole determines the morphology of the ribosomal DNA
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    1. EMBOpress 18 Jan 2023

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    biorxiv.org/content/10.1101/2021.06.23.449658v1
  53. www.biorxiv.org www.biorxiv.org
    Porcine intestinal innate lymphoid cells and lymphocyte spatial context revealed through single-cell RNA sequencing
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    1. EMBOpress 18 Jan 2023

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    biorxiv.org/content/10.1101/2022.01.09.475571v1
  54. www.biorxiv.org www.biorxiv.org
    Sibling rivalry among the ZBTB transcription factor family: homo vs. heterodimers
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    1. EMBOpress 13 Jan 2023

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    biorxiv.org/content/10.1101/2021.12.17.472994v2
  55. Dec 2022
  56. www.biorxiv.org www.biorxiv.org
    Stage-specific gene and transcript dynamics in human male germ cells
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    1. EMBOpress 30 Dec 2022

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    biorxiv.org/content/10.1101/2022.03.22.485121v1
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    New Earth Commission Working Group to Focus on the Challenges of Cross-Scale Translation - Earth Commission
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    1. stopresetgo 29 Dec 2022
      The Earth Commission provides this report in its role as a component of the Global Common Alliance.

      !- relationship : Earth Commisson and Global Common Alliance

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    earthcommission.org/news/earth-commission-news/new-earth-commission-working-group-to-focus-on-the-challenges-of-cross-scale-translation/
  58. www.biorxiv.org www.biorxiv.org
    Cdh5-lineage independent origin of dermal lymphatic vessels revealed by temporally restricted lineage tracing
    1
    1. EMBOpress 17 Dec 2022

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    biorxiv.org/content/10.1101/2022.06.08.495310v1
  59. www.biorxiv.org www.biorxiv.org
    Endoplasmic Reticulum membranes are continuously required to maintain mitotic spindle size and forces
    1
    1. EMBOpress 16 Dec 2022

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    biorxiv.org/content/10.1101/2022.05.14.491942v1
  60. www.biorxiv.org www.biorxiv.org
    Genome-wide Profiling of Histone Modifications in Plasmodium falciparum using CUT&RUN.
    1
    1. EMBOpress 16 Dec 2022

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    biorxiv.org/content/10.1101/2022.08.01.502378v2
  61. www.biorxiv.org www.biorxiv.org
    Systematic analysis of ADP-ribose detection reagents and optimisation of sample preparation to detect ADP-ribosylation in vitro and in cells
    1
    1. EMBOpress 15 Dec 2022

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    biorxiv.org/content/10.1101/2022.02.22.481411v1
  62. www.biorxiv.org www.biorxiv.org
    Drosophila pVALIUM10 TRiP RNAi lines cause undesired silencing of Gateway-based transgenes
    1
    1. EMBOpress 13 Dec 2022

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    biorxiv.org/content/10.1101/2022.08.12.503771v2
  63. Nov 2022
  64. www.biorxiv.org www.biorxiv.org
    Actin binding domain of Rng2 strongly inhibits actin movement on myosin II HMM through structural changes of actin filaments
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    biorxiv.org/content/10.1101/2020.04.14.041046v4
  65. www.biorxiv.org www.biorxiv.org
    Miro GTPase domains regulate assembly of the mitochondrial motor-adaptor complex
    1
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    biorxiv.org/content/10.1101/2022.05.13.491728v1
  66. www.biorxiv.org www.biorxiv.org
    Improving the computation efficiency of polygenic risk score modeling: Faster in Julia
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    1. EMBOpress 21 Nov 2022

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    biorxiv.org/content/10.1101/2021.12.27.474263v1
  67. www.biorxiv.org www.biorxiv.org
    Structure of mammalian V-ATPase with the TLDc domain protein mEAK7 bound
    1
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  68. www.biorxiv.org www.biorxiv.org
    Profiling subcellular localization of nuclear-encoded mitochondrial gene products in zebrafish
    1
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  69. Oct 2022
  70. www.biorxiv.org www.biorxiv.org
    https://biorxiv.org/cgi/content/10.1101/2022.03.06.483172
    1
    1. EMBOpress 28 Oct 2022

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  71. www.biorxiv.org www.biorxiv.org
    Replication-associated inversions are the dominant form of bacterial chromosome structural variation
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  72. www.biorxiv.org www.biorxiv.org
    Contribution of the Golgi apparatus in morphogenesis of a virus induced cytopathic vacuolar system
    1
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  73. www.biorxiv.org www.biorxiv.org
    Regulation of Liprin-α phase separation by CASK is disrupted by a mutation in its CaM kinase domain
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    biorxiv.org/content/10.1101/2022.04.21.489014v1
  74. www.biorxiv.org www.biorxiv.org
    Gain-of-function genetic screens in human cells identify SLC transporters overcoming environmental nutrient restrictions
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    biorxiv.org/content/10.1101/2022.04.03.486870v1
  75. www.biorxiv.org www.biorxiv.org
    Synthetic evolution of herbicide resistance using a T7 RNAP-based random DNA base editor
    1
    1. EMBOpress 08 Oct 2022

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    biorxiv.org/content/10.1101/2021.11.30.470689v1
  76. www.biorxiv.org www.biorxiv.org
    Evaluation of CA repeat arrays as targets for MeCP2 function in the brain
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    biorxiv.org/content/10.1101/2022.04.26.489598v2
  77. Sep 2022
  78. www.biorxiv.org www.biorxiv.org
    Meiotic DNA breaks activate a streamlined phospho-signaling response that largely avoids protein level changes
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    biorxiv.org/content/10.1101/2022.02.24.481857v1
  79. www.biorxiv.org www.biorxiv.org
    Human gene function publications that describe wrongly identified nucleotide sequence reagents are unacceptably frequent within the genetics literature
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    biorxiv.org/lookup/doi/10.1101/2021.07.29.453321
  80. Aug 2022
  81. www.biorxiv.org www.biorxiv.org
    Decreasing pdzd8-mediated mitochondrial-ER contacts in neurons improves fitness by increasing mitophagy
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    biorxiv.org/content/10.1101/2020.11.14.382861v1
  82. www.biorxiv.org www.biorxiv.org
    Islet Gene View - a tool to facilitate islet research
    1
    1. EMBOpress 19 Aug 2022

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    biorxiv.org/content/10.1101/435743v3
  83. www.biorxiv.org www.biorxiv.org
    Resolution of the curse of dimensionality in single-cell RNA sequencing data analysis
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    biorxiv.org/content/10.1101/2022.05.02.490246v1
  84. www.biorxiv.org www.biorxiv.org
    CFTR modulator response measurements in subjects with cystic fibrosis using 2D differentiated nasal epithelia converted into spheroids
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    1. EMBOpress 18 Aug 2022

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    biorxiv.org/content/10.1101/2021.07.20.453105v2
  85. www.biorxiv.org www.biorxiv.org
    A minimal hepatocyte growth factor mimic acting as a powerful agonist of the MET receptor tyrosine kinase for regeneration of epithelial tissues and organs.
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    biorxiv.org/content/10.1101/2020.07.20.212654v3
  86. www.biorxiv.org www.biorxiv.org
    Drosophila insulator proteins exhibit in-vivo liquid-liquid phase separation properties
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    biorxiv.org/content/10.1101/2022.05.27.493687v1
  87. www.biorxiv.org www.biorxiv.org
    ScRNA-seq Expression of APOC2 and IFI27 Identifies Four Families of Alveolar Macrophage Superclusters in Cystic Fibrosis and Healthy BALF
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    biorxiv.org/content/10.1101/2022.01.30.478325v3
  88. www.biorxiv.org www.biorxiv.org
    ERK2 MAP kinase regulates SUFU binding by multisite phosphorylation of GLI1
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    biorxiv.org/content/10.1101/2021.12.22.473898v2
  89. Jul 2022
  90. www.biorxiv.org www.biorxiv.org
    LncRNA RUS shapes the gene expression program towards neurogenesis
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    biorxiv.org/content/10.1101/2022.02.17.480853v1
  91. Jun 2022
  92. www.civicsoftechnology.org www.civicsoftechnology.org
    Whose interests do teaching machines serve? — Civics of Technology
    1
    1. chrisaldrich 21 Jun 2022
      Critical Ed Tech Scholars Alliance (CETSA), a grassroots group of educators working in higher ed

      Where exactly is this group? They don't seem to have an online presence.

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  93. www.biorxiv.org www.biorxiv.org
    Negative curvature-promoting lipids instruct nuclear ingression of low autophagic potential vacuoles
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  94. www.biorxiv.org www.biorxiv.org
    OXSR1 inhibits inflammasome activation by limiting potassium efflux during mycobacterial infection
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    biorxiv.org/content/10.1101/2021.04.21.440692v1
  95. www.biorxiv.org www.biorxiv.org
    Genetic and compound screens uncover factors modulating cancer cell response to indisulam
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    biorxiv.org/content/10.1101/2021.12.20.473451v1
  96. www.biorxiv.org www.biorxiv.org
    Map7D2 and Map7D1 facilitate microtubule stabilization through distinct mechanisms to control cell motility and neurite outgrowth.
    1
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    biorxiv.org/content/10.1101/2021.10.27.466197v3
  97. May 2022
  98. www.biorxiv.org www.biorxiv.org
    Molecular insights into RNA recognition and gene regulation by the TRIM-NHL protein Mei-P26
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    biorxiv.org/content/10.1101/2021.09.20.461029v1
  99. Apr 2022
  100. www.biorxiv.org www.biorxiv.org
    Tricalbin proteins regulate plasma membrane phospholipid homeostasis
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    biorxiv.org/content/10.1101/2021.06.04.447076v1
  101. www.biorxiv.org www.biorxiv.org
    Polycomb Group Ring Finger Protein 6 suppresses Myc-induced lymphomagenesis
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    biorxiv.org/content/10.1101/2021.12.02.470967v1
  102. www.biorxiv.org www.biorxiv.org
    Quantitative analysis of nuclear pore complex organization in Schizosaccharomyces pombe
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    biorxiv.org/content/10.1101/2021.08.11.455278v1
  103. www.biorxiv.org www.biorxiv.org
    TET2-mediated epigenetic reprogramming of breast cancer cells impairs lysosome biogenesis
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    1. EMBOpress 22 Apr 2022

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  104. www.biorxiv.org www.biorxiv.org
    https://biorxiv.org/cgi/content/10.1101/2021.10.18.464926
    1
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  105. www.biorxiv.org www.biorxiv.org
    Conserved exchange of paralog proteins during neuronal differentiation
    1
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    biorxiv.org/content/10.1101/2021.07.22.453347v1
  106. Mar 2022
  107. www.biorxiv.org www.biorxiv.org
    AGO1 regulates major satellite transcripts and H3K9me3 distribution at pericentromeric regions in mESCs
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    biorxiv.org/content/10.1101/2021.07.26.453733v2
  108. www.biorxiv.org www.biorxiv.org
    GROWTH-RATE DEPENDENT AND NUTRIENT-SPECIFIC GENE EXPRESSION RESOURCE ALLOCATION IN FISSION YEAST
    1
    1. EMBOpress 22 Mar 2022

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    biorxiv.org/content/10.1101/2021.03.16.435638v1
  109. www.biorxiv.org www.biorxiv.org
    The expression of essential selenoproteins during zebrafish development requires SECIS binding protein 2-like
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    biorxiv.org/content/10.1101/2021.11.01.466845v1
  110. www.biorxiv.org www.biorxiv.org
    Stress-induced tyrosine phosphorylation of RtcB modulates IRE1 activity and signaling outputs.
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    biorxiv.org/content/10.1101/2020.03.02.972950v5
  111. www.biorxiv.org www.biorxiv.org
    ETV2 regulates PARP-1 binding protein to induce ER stress-mediated cell death in tuberin-deficient cells
    1
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    biorxiv.org/content/10.1101/2021.11.08.467714v1
  112. www.biorxiv.org www.biorxiv.org
    Quantitative Profiling of Adaptation to Cyclin E Overproduction
    1
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    biorxiv.org/content/10.1101/2021.07.26.453751v3
  113. www.biorxiv.org www.biorxiv.org
    https://biorxiv.org/cgi/content/10.1101/2021.09.08.459430
    1
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  114. www.biorxiv.org www.biorxiv.org
    https://biorxiv.org/cgi/content/10.1101/2021.04.23.440619
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  115. www.biorxiv.org www.biorxiv.org
    Structural basis of membrane recognition of Toxoplasma gondii vacuole by Irgb6
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      PeerReviewed EMBOPress Life Science Alliance microbiology
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    biorxiv.org/content/10.1101/2021.07.01.450801v1
  116. www.biorxiv.org www.biorxiv.org
    Redundant and specific roles of EGFR ligands in the ERK activation waves during collective cell migration of MDCK cells
    1
    1. EMBOpress 10 Mar 2022

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    biorxiv.org/content/10.1101/2021.05.25.445569v1
  117. www.biorxiv.org www.biorxiv.org
    Nonsense-mediated mRNA decay utilizes complementary mechanisms to suppress mRNA and protein accumulation
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    1. EMBOpress 09 Mar 2022

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    biorxiv.org/content/10.1101/2021.05.24.445486v1
  118. www.biorxiv.org www.biorxiv.org
    Recruitment of Scc2/4 to double strand breaks depends on &#x03B3;H2A and DNA end resection
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    1. EMBOpress 08 Mar 2022

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    biorxiv.org/content/10.1101/2021.07.09.451733v1
  119. Feb 2022
  120. www.mediamatters.org www.mediamatters.org
    Fox News goes all-in promoting anti-vaccine mandate Canadian truckers
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    1. lucyparfitt16 11 Feb 2022

      Fox News goes all-in promoting anti-vaccine mandate Canadian truckers. (n.d.). Media Matters for America. Retrieved February 11, 2022, from https://www.mediamatters.org/coronavirus-covid-19/fox-news-goes-all-promoting-anti-vaccine-mandate-canadian-truckers

      is:webpage lang:en anti-vaccine anti-mandate vaccine mandate Canada Fox News COVID-19 vaccine protest government trucker convoy airtime Canadian Trucking Alliance Freedom convoy media propaganda USA Omicron social media
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  121. www.biorxiv.org www.biorxiv.org
    Refining the domain architecture model of the replication origin firing factor Treslin/TICRR
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    1. EMBOpress 09 Feb 2022

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    biorxiv.org/content/10.1101/2021.07.24.453613v1
  122. www.biorxiv.org www.biorxiv.org
    Small disulfide loops in peptide hormones mediate self-aggregation and secretory granule sorting
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    1. EMBOpress 04 Feb 2022

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    biorxiv.org/content/10.1101/2021.08.20.457087v1
  123. www.biorxiv.org www.biorxiv.org
    Cis-Regulatory Hubs: a Relevant 3D Model to Study the Genetics of Complex Diseases with an Application to Schizophrenia
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    1. EMBOpress 04 Feb 2022

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    biorxiv.org/content/10.1101/2021.06.22.449467v2
  124. www.biorxiv.org www.biorxiv.org
    Nucleotide Biosynthesis Links Glutathione Metabolism to Ferroptosis Sensitivity
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    1. EMBOpress 03 Feb 2022

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    biorxiv.org/content/10.1101/2021.07.14.452394v1
  125. Jan 2022
  126. www.biorxiv.org www.biorxiv.org
    Rbfox1 is required for myofibril development and maintaining fiber-type specific isoform expression in Drosophila muscles
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    1. EMBOpress 21 Jan 2022

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    biorxiv.org/content/10.1101/2021.05.09.443278v1
  127. www.biorxiv.org www.biorxiv.org
    https://biorxiv.org/cgi/content/10.1101/2021.02.04.429604
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    1. EMBOpress 21 Jan 2022

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  128. www.biorxiv.org www.biorxiv.org
    Bimodal fibrosis in a novel mouse model of bleomycin-induced usual interstitial pneumonia
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    1. EMBOpress 20 Jan 2022

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    biorxiv.org/content/10.1101/2021.03.18.435059v1
  129. www.biorxiv.org www.biorxiv.org
    Electron Cryo-Tomography Structure of Axonemal Doublet Microtubule from Tetrahymena thermophila
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    1. EMBOpress 20 Jan 2022

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    biorxiv.org/content/10.1101/2021.07.13.452106v1
  130. Dec 2021
  131. www.biorxiv.org