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DOI: 10.1016/j.stem.2026.01.007
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SciCrunch record: RRID:CVCL_2Z88
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DOI: 10.1016/j.stem.2026.01.007
Resource: (RRID:CVCL_2Z88)
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DOI: 10.1016/j.stem.2026.01.007
Resource: (Coriell Cat# GM25256, RRID:CVCL_Y803)
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DOI: 10.1016/j.stem.2026.01.007
Resource: (RRID:CVCL_9771)
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DOI: 10.1016/j.stem.2026.01.007
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DOI: 10.1016/j.stem.2026.01.007
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DOI: 10.1016/j.stem.2026.01.007
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DOI: 10.1016/j.stem.2026.01.007
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SciCrunch record: RRID:AB_461064
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DOI: 10.1016/j.stem.2026.01.007
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DOI: 10.1016/j.stem.2026.01.007
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SciCrunch record: RRID:AB_3669120
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DOI: 10.1016/j.stem.2026.01.007
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DOI: 10.1016/j.stem.2026.01.007
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DOI: 10.1016/j.stem.2026.01.007
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DOI: 10.1016/j.stem.2026.01.007
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DOI: 10.1016/j.redox.2026.104073
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SciCrunch record: RRID:IMSR_JAX:024857
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DOI: 10.1016/j.neuron.2025.12.034
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DOI: 10.1016/j.neuron.2025.12.034
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DOI: 10.1016/j.neuron.2025.12.034
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SciCrunch record: RRID:IMSR_JAX:030323
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DOI: 10.1016/j.neuron.2025.12.034
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DOI: 10.1016/j.neuron.2025.12.034
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SciCrunch record: RRID:AB_2247211
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SciCrunch record: RRID:SCR_024675
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DOI: 10.1016/j.neuron.2025.12.032
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SciCrunch record: RRID:AB_2671936
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DOI: 10.1016/j.neuron.2025.12.032
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DOI: 10.1016/j.neuron.2025.12.032
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SciCrunch record: RRID:AB_2890897
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DOI: 10.1016/j.neuron.2025.12.032
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SciCrunch record: RRID:AB_1566510
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DOI: 10.1016/j.neuron.2025.12.028
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SciCrunch record: RRID:AB_476744
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DOI: 10.1016/j.neuron.2025.12.028
Resource: (Abberior Cat# STRED-1002-500UG, RRID:AB_2833015)
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SciCrunch record: RRID:AB_2833015
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DOI: 10.1016/j.neuron.2025.12.028
Resource: (Thermo Fisher Scientific Cat# A-11006, RRID:AB_2534074)
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SciCrunch record: RRID:AB_2534074
RRID:AB_3712829
DOI: 10.1016/j.neuron.2025.12.028
Resource: None
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SciCrunch record: RRID:AB_3712829
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DOI: 10.1016/j.neuron.2025.12.028
Resource: (Thermo Fisher Scientific Cat# A-11076, RRID:AB_2534120)
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SciCrunch record: RRID:AB_2534120
RRID:CVCL_1926
DOI: 10.1016/j.neuron.2025.12.028
Resource: (RRID:CVCL_1926)
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SciCrunch record: RRID:CVCL_1926
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DOI: 10.1016/j.neuron.2025.12.028
Resource: (BioLegend Cat# 137002, RRID:AB_2044004)
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SciCrunch record: RRID:AB_2044004
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DOI: 10.1016/j.neuron.2025.12.028
Resource: Huygens Software (RRID:SCR_014237)
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SciCrunch record: RRID:SCR_014237
RRID:SCR_002798
DOI: 10.1016/j.neuron.2025.12.028
Resource: GraphPad Prism (RRID:SCR_002798)
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SciCrunch record: RRID:SCR_002798
RRID:SCR_003070
DOI: 10.1016/j.neuron.2025.12.028
Resource: ImageJ (RRID:SCR_003070)
Curator: @scibot
SciCrunch record: RRID:SCR_003070
RRID:Addgene_249179
DOI: 10.1016/j.neuron.2025.12.028
Resource: None
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SciCrunch record: RRID:Addgene_249179
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DOI: 10.1016/j.neuron.2025.12.028
Resource: Python Programming Language (RRID:SCR_008394)
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SciCrunch record: RRID:SCR_008394
RRID:Addgene_249180
DOI: 10.1016/j.neuron.2025.12.028
Resource: None
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SciCrunch record: RRID:Addgene_249180
RRID:SCR_001905
DOI: 10.1016/j.neuron.2025.12.028
Resource: R Project for Statistical Computing (RRID:SCR_001905)
Curator: @scibot
SciCrunch record: RRID:SCR_001905
RRID:SCR_007370
DOI: 10.1016/j.neuron.2025.12.028
Resource: Imaris (RRID:SCR_007370)
Curator: @scibot
SciCrunch record: RRID:SCR_007370
RRID:Addgene_249176
DOI: 10.1016/j.neuron.2025.12.028
Resource: None
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SciCrunch record: RRID:Addgene_249176
RRID:Addgene_112867
DOI: 10.1016/j.neuron.2025.12.028
Resource: RRID:Addgene_112867
Curator: @scibot
SciCrunch record: RRID:Addgene_112867
RRID:Addgene_249177
DOI: 10.1016/j.neuron.2025.12.028
Resource: None
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SciCrunch record: RRID:Addgene_249177
RRID:Addgene_103002
DOI: 10.1016/j.neuron.2025.12.028
Resource: RRID:Addgene_103002
Curator: @scibot
SciCrunch record: RRID:Addgene_103002
RRID:Addgene_249174
DOI: 10.1016/j.neuron.2025.12.028
Resource: None
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SciCrunch record: RRID:Addgene_249174
RRID:Addgene_249178
DOI: 10.1016/j.neuron.2025.12.028
Resource: None
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SciCrunch record: RRID:Addgene_249178
RRID:IMSR_JAX:031822
DOI: 10.1016/j.neuron.2025.12.028
Resource: (IMSR Cat# JAX_031822,RRID:IMSR_JAX:031822)
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SciCrunch record: RRID:IMSR_JAX:031822
RRID:IMSR_JAX:032783
DOI: 10.1016/j.neuron.2025.12.028
Resource: RRID:IMSR_JAX:032783
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SciCrunch record: RRID:IMSR_JAX:032783
RRID:IMSR_JAX:000664
DOI: 10.1016/j.neuron.2025.12.028
Resource: RRID:IMSR_JAX:000664
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SciCrunch record: RRID:IMSR_JAX:000664
RRID:IMSR_JAX:003752
DOI: 10.1016/j.neuron.2025.12.028
Resource: (IMSR Cat# JAX_003752,RRID:IMSR_JAX:003752)
Curator: @scibot
SciCrunch record: RRID:IMSR_JAX:003752
RRID:MMRRC_036395-UCD
DOI: 10.1016/j.neuron.2025.12.028
Resource: RRID:MMRRC_036395-UCD
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SciCrunch record: RRID:MMRRC_036395-UCD
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DOI: 10.1016/j.neuron.2025.12.028
Resource: (Sigma-Aldrich Cat# F1804, RRID:AB_262044)
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SciCrunch record: RRID:AB_262044
RRID:MGI:3029284
DOI: 10.1016/j.neuron.2025.12.028
Resource: None
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SciCrunch record: RRID:MGI:3029284
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DOI: 10.1016/j.neuron.2025.12.028
Resource: (IMSR Cat# JAX_024872,RRID:IMSR_JAX:024872)
Curator: @scibot
SciCrunch record: RRID:IMSR_JAX:024872
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DOI: 10.1016/j.neuron.2025.12.028
Resource: (Aves Labs Cat# GFAP, RRID:AB_2313547)
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SciCrunch record: RRID:AB_2313547
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DOI: 10.1016/j.neuron.2025.12.028
Resource: None
Curator: @scibot
SciCrunch record: RRID:AB_228446
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DOI: 10.1016/j.neuron.2025.12.028
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SciCrunch record: RRID:AB_3076105
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DOI: 10.1016/j.neuron.2025.12.028
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SciCrunch record: RRID:AB_2533914
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DOI: 10.1016/j.neuron.2025.12.028
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SciCrunch record: RRID:AB_3076004
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DOI: 10.1016/j.neuron.2025.12.028
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SciCrunch record: RRID:AB_2737052
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DOI: 10.1016/j.neuron.2025.12.028
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SciCrunch record: RRID:AB_3075920
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DOI: 10.1016/j.neuron.2025.12.028
Resource: (Cell Signaling Technology Cat# 2278, RRID:AB_490778)
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SciCrunch record: RRID:AB_490778
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DOI: 10.1016/j.neuron.2025.12.028
Resource: (Cell Signaling Technology Cat# 14793, RRID:AB_2572291)
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SciCrunch record: RRID:AB_2572291
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DOI: 10.1016/j.neuron.2025.12.028
Resource: (AnaSpec; EGT Group Cat# 55043A, RRID:AB_2298886)
Curator: @scibot
SciCrunch record: RRID:AB_2298886
RRID:AB_390918
DOI: 10.1016/j.neuron.2025.12.028
Resource: (Roche Cat# 11867423001, RRID:AB_390918)
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SciCrunch record: RRID:AB_390918
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DOI: 10.1016/j.neuron.2025.12.028
Resource: (Millipore Cat# 05-419, RRID:AB_309725)
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SciCrunch record: RRID:AB_309725
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DOI: 10.1016/j.neuron.2025.12.028
Resource: (Synaptic Systems Cat# 234 009, RRID:AB_2891282)
Curator: @scibot
SciCrunch record: RRID:AB_2891282
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DOI: 10.1016/j.neuron.2025.12.028
Resource: (Synaptic Systems Cat# 135 404, RRID:AB_887884)
Curator: @scibot
SciCrunch record: RRID:AB_887884
eLife Assessment
This important study characterizes a cascade of neural processes triggered by memory-based prediction errors. The study uses an impressive collection of approaches and methods to characterize and measure cognitive control, arousal, and memory changes as a function of memory-based violations. The analyses are technically sophisticated and rigorous and, taken together, provide solid evidence that there are multiple processes accompanying prediction errors, and that they differentially relate to successful encoding. The manuscript would be much improved by the addition of a discussion or visual schematic that integrates the numerous findings together into a more coherent model.
Reviewer #1 (Public review):
Summary:
This manuscript describes a multi-modal study of associative learning and memory in humans that combines scalp EEG, pupillometry and behavioral analysis to explore the construct of mnemonic prediction errors (MPEs), in terms of their relationship to attention and cognitive control. Across two pooled studies, participants performed associative memory tasks in which they learned the relationship between a cue word (action verb) and a subsequent picture (animate or inanimate) with a strong vs. weak (4 or 1 repetitions) encoding manipulation. At test, participants were encouraged to generate a prediction following the cue word to determine whether the subsequently presented picture was a match or a mismatch. The timecourse of pupillary responses during match decisions was decomposed using temporal principal components analysis, which identified 6 distinct and overlapping processes. Some of the components (PC3/PC4) exhibited sensitivity to both the strength and mismatch conditions, as well as behavior (both RT and accuracy) and retrieval success on the subsequent trial. Furthermore, relationships were also observed between pupillary responses (specifically for PC4) and both frontal theta and posterior alpha power measures obtained from scalp EEG in Experiment 2, as well as for frontal theta and subsequent learning from mismatch stimuli (assessed using subsequent memory findings from a surprise recognition test). The authors suggest the findings indicate that MPEs elicit changes in attention, arousal and cognitive control which impact subsequent learning.
Strengths:
This manuscript has many strengths, including a clever study design, thoughtful integration of multiple neurocognitive measures, and a set of rigorous and technically sophisticated analyses, which reveal a large set of relationships among the measures and behavior. The findings demonstrating brain/physiology-behavior relationships are particularly important, in that they point to potential functional consequences of MPES.
Weaknesses:
The technical proficiency and complexity of the study and analysis also present a clear limitation and challenge for interpretation. As a reader, even those who are quite knowledgeable about the methods, constructs, and questions being addressed will often struggle (as this reviewer did) to keep the large set of findings in mind and gain an understanding of how they all fit together.
Indeed, it seems like there are many threads running together in the paper, which makes it challenging to find the through-line of the key findings, or to understand how they might relate to some pre-existing hypotheses, rather than merely interesting patterns detected in the data. In the Introduction and Discussion, it seems as if the key question is to understand the pathways by which MPEs impact cognition, but this is a rather broad topic, so it is not clear exactly what the authors are aiming at with this question and study design.
As an example, authors operationalize frontal theta power as an index of cognitive control demand, and one of the pathways by which MPEs impact cognition. But this point becomes somewhat circular, since it is not clear how or why the Mismatch x Strength interaction in frontal theta reflects that demand. It would have been better to set this pattern up in the Introduction as a theoretically driven hypothesis, since it currently appears more like a post-hoc interpretation. This is mirrored by how the issue is first brought up in the Introduction, where it states somewhat vaguely: "whether MPEs are followed by an increase in frontal theta... warrants closer examination". Later in the results, there are findings relating frontal theta to pupil dilation, posterior alpha suppression and then subsequent memory. It was hard to understand how all the findings might be linked together functionally or conceptually. Are the authors potentially postulating a mediating or mechanistic pathway, in which the MPE leads to increased cognitive control (frontal theta), which then leads to enhanced subsequent memory of those events? If this is the case, then maybe a formal path analysis would be the best way to test or state this hypothesis. It would also be useful to specify more clearly how the pupil components and alpha suppression factor into this mediating path, since it was not clear.
Relatedly, the authors suggest that internal attention and arousal also play relevant roles in this pathway, but these are also not clear. In some cases, it is stated as if this is a distinct pathway from the cognitive control one, since there is a focus in the results on the independence of frontal theta and posterior alpha, but elsewhere they seem to be treated as two aspects, or distinct steps, within a single pathway. Again, these different threads of the findings were quite challenging for the reader to follow. Pathway analyses, such as with multiple mediation or moderated mediation, could be a useful way to address this question. For example, it seems as if readiness-to-remember is another behavioral outcome (like subsequent memory) that could be used in the search for mediators.
At the minimum, it would be quite helpful to have diagrammatic figures that specify the hypothesized and observed relationships between independent variables (Strength, Mismatch), physiological indices (pupil dilation components, frontal theta, posterior alpha) and key outcome measures (accuracy, RT, next-trial retrieval success, subsequent memory), so that the reader can refer back to them as each component of the analyses is conducted.
Minor Points:
Many figures had x-axes showing a pupil component or EEG power metric broken down by quartile or quintile. Yet nowhere is it ever explained why this graphical (or analytic?) approach is used and what it reflects, or how it is decided which break down to use (quartile/quintile). If the data are analyzed as a correlation, why is a scatterplot not shown instead?
It was surprising that, unlike readiness-to-remember, which was analyzed via logistic regression and odds-ratio, subsequent memory was not analyzed in the same fashion (i.e., as a binary outcome variable predicted by frontal theta), rather than in a reverse chronological one (subsequent memory predicting frontal theta). Historically, it was the case that subsequent memory was analyzed in this manner, but that was before the era in which trial-level linear mixed-effect models were in wide usage, as they are implemented in this study. Thus, the choice seems like a wasted opportunity or a step backwards analytically.
Reviewer #2 (Public review):
Summary:
The authors studied cognitive control and attention in response to mnemonic prediction errors (MPEs): situations in which the external reality violates internal memory-based predictions. The behavioral task first established strong versus weak predictions, and then either confirmed or violated these predictions. The authors examined markers of cognitive control (frontal theta) and attention (posterior alpha suppression, pupil response) while strong and weak predictions were confirmed or violated. They found increased cognitive control (frontal theta) for strong MPEs, which correlated with subsequent memory. Markers of attention (alpha suppression, pupil response) also accompanied strong MPEs but did not correlate with subsequent memory. Pupil response was investigated using an interesting approach that decomposes the response into different components, finding that different components respond earlier or later and show different correlations with MPEs and their strength. The authors also investigated how EEG, reaction time, and pupil responses correlated with one another, providing further insight into the mechanism underlying the response to MPEs. Together, the study points toward multiple control and attention mechanisms involved in MPE response and memory.
Strengths:
The study has a clear behavioral paradigm with multiple measures - behavioral, EEG, and pupillometry that offer an investigation into different aspects of MPE response and memory.
The study is also very comprehensive in looking at multiple phases in processing MPEs: the prediction phase (prior to the violation), the response to MPEs, and subsequent memory of MPEs, all within one study. Specifically, the link between neural mechanisms and subsequent memory is a major advancement, as most prior studies did not include this component. Mechanisms underlying subsequent memory of MPEs are theoretically important, as a primary function of MPEs is to promote learning and memory. As the authors mention, the different neural and pupillary signals are not robustly correlated, suggesting multiple mechanisms underlying MPE detections, which is interesting, offers avenues for future research, and can facilitate a better theory of how MPEs are processed in the brain. Finally, the decomposition of pupil response into different components and their correlation with behavior (RT during match/MPE detection) is interesting.
Weaknesses:
The methods are rigorous, and the claims are mostly supported by the data, but there are a few weaknesses or places that could be improved:
(1) The authors conduct PCA analysis to identify different components of the pupillary response to MPE and relate them to behavior. Specifically, the authors identify components PC3 and PC4, which they interpret as related to MPE. However, some parts of the interpretation could be clearer or better justified:
(a) The authors refer to PC4 as "post-decision cognitive processing". But, given that RT was between .5-.7s, and PC3 peaked after more than 1s, wouldn't it be cautious to interpret PC3 as post-decision as well?
(b) MPEs overall elicit longer RTs in this study, suggesting that long RT is a behavioral marker of MPE. Nonetheless, the authors argue on p. 12: "Altogether, these findings indicate that when stronger mnemonic predictions (as indexed by shorter RTs) were violated." And, PC3 is correlated with shorter RTs for mismatches, meaning that behaviorally, these trials were more similar to matches. Thus, how do the authors interpret shorter versus longer RTs for MPEs, and what processes do these RT reflect?
(2) The brain to pupil relationship (p. 13-14): If I understand correctly, this was done on a trial-by-trial basis, but the high temporal resolution allows doing the analysis in a time-resolved manner - does brain activity at a certain time point preceding/following the pupil response correlate with the pupil response? It might be that cognitive control influences attention mechanisms or vice versa (because there is some overlap in the response). Although not testing causality, this temporally resolved correlation would be an interesting way to start probing how signals might influence each other.
(3) The relationships the authors find between brain measures and pupil components were largely not specific to mismatches/matches. However, are they specific to this task? I think it would benefit the paper to show that these relationships are potentially specific to making match/mismatch memory decisions, versus, e.g., any stimulus processing. For example, the authors could run the same analyses locked to stimuli in the study phase, anticipating a different pattern, if indeed these findings are specific to the associative memory task.
(4) During memory retrieval (i.e., before the probe), the authors find that frontal theta, a marker of cognitive control, was associated on a trial-by-trial basis with more posterior alpha (i.e., less alpha suppression, potentially reflecting less attention), and that this association was stronger for weaker predictions. The authors interpreted this as weaker predictions necessitating more cognitive control, and that more cognitive control was recruited specifically in trials where retrieval included less content (memory reinstatement) to attend to. Generally, cognitive control is recruited to facilitate memory retrieval. If so, one possible interpretation is that this correlation reflects cognitive control effort that has failed to produce enough memory reinstatement. The other possibility is that this correlation reflects more specific retrieval of the correct probe, without retrieval of interfering items (i.e., overall less content). I believe that the former explanation predicts that this correlation would be associated with longer RTs (more difficult decisions), while the latter predicts shorter RTs (easier decisions due to successful retrieval), at least for matches.
(5) In section 3, the authors found a positive relationship between alpha during memory retrieval and PC3 during MPE. If I understood correctly, this means that less attention during retrieval (less suppression) is correlated with a stronger PC3 response. How do the authors interpret this? Maybe along the same lines as in (5), specifically retrieving the correct information (i.e., less retrieved content to attend to) means a stronger prediction, leading to a stronger MPE, and a stronger MPE response, as reflected by PC3?
(6) The results with subsequent memory are important and address a major gap in the field that largely did not relate neural effects of MPE to subsequent memory. However, one major limitation of the study is that the authors did not test memory for matches. I understand the logic of avoiding testing matches. Because matches were repeated more times in the study, it's not a fair comparison, and could change participants' overall criterion for old/new decisions. However, one possibility would have been to test only the weak prediction; this could have given some specificity to the neural subsequent memory findings.
(7) The authors nicely characterized the different PC of pupillary MPE response. But, with respect to subsequent memory, they only present pupil size. Unless there is some methodological reason that prevents testing subsequent memory on the PC, I think this will be very informative about the potential mechanisms underlying memory of MPE.
(8) This paper includes many interesting findings, and I am not sure how they all come together into a cohesive mechanistic understanding of MPE response and subsequent memory. I think the paper would benefit from either a conceptual mechanism figure or, in the Discussion, have a summary of a proposed mechanism integrating the findings together.
(9) Relatedly, the section "Immediate, strength-sensitive neurocognitive impacts of MPEs" does not link the arguments to specific data points, so it's hard to follow which data specifically the authors are interpreting.
(10) If I understand correctly, the authors did not find improved memory for strong compared to weak MPE. First, I think this behavioral result should be incorporated in the main paper and in the interpretation of the results. Second, given that the neural effects the authors tested either correlated with memory for strong MPE or did not show a relationship with memory, what neural/pupil response could explain memory for weak MPE?
RRID:SCR_002823
DOI: 10.1016/j.neuron.2025.12.023
Resource: FSL (RRID:SCR_002823)
Curator: @scibot
SciCrunch record: RRID:SCR_002823
RRID:SCR_008796
DOI: 10.1016/j.neuron.2025.12.023
Resource: ICBM 152 Nonlinear atlases version 2009 (RRID:SCR_008796)
Curator: @scibot
SciCrunch record: RRID:SCR_008796
RRID:SCR_002438
DOI: 10.1016/j.neuron.2025.12.023
Resource: Mindboggle (RRID:SCR_002438)
Curator: @scibot
SciCrunch record: RRID:SCR_002438
RRID:SCR_004757
DOI: 10.1016/j.neuron.2025.12.023
Resource: ANTS - Advanced Normalization ToolS (RRID:SCR_004757)
Curator: @scibot
SciCrunch record: RRID:SCR_004757
RRID:SCR_002502
DOI: 10.1016/j.neuron.2025.12.023
Resource: Nipype (RRID:SCR_002502)
Curator: @scibot
SciCrunch record: RRID:SCR_002502
RRID:SCR_001847
DOI: 10.1016/j.neuron.2025.12.023
Resource: FreeSurfer (RRID:SCR_001847)
Curator: @scibot
SciCrunch record: RRID:SCR_001847
RRID:SCR_001362
DOI: 10.1016/j.neuron.2025.12.023
Resource: NiLearn (RRID:SCR_001362)
Curator: @scibot
SciCrunch record: RRID:SCR_001362
RRID:SCR_016216
DOI: 10.1016/j.neuron.2025.12.023
Resource: FMRIPREP (RRID:SCR_016216)
Curator: @scibot
SciCrunch record: RRID:SCR_016216
SCR_016434
DOI: 10.1016/j.neuron.2025.12.021
Resource: Suite2P (RRID:SCR_016434)
Curator: @scibot
SciCrunch record: RRID:SCR_016434
RRID:SCR_002881
DOI: 10.1016/j.neuron.2025.12.021
Resource: Psychophysics Toolbox (RRID:SCR_002881)
Curator: @scibot
SciCrunch record: RRID:SCR_002881
RRID:IMSR_JAX:024742
DOI: 10.1016/j.neuron.2025.12.021
Resource: (IMSR Cat# JAX_024742,RRID:IMSR_JAX:024742)
Curator: @scibot
SciCrunch record: RRID:IMSR_JAX:024742
RRID:SCR_015857
DOI: 10.1016/j.neuron.2025.12.021
Resource: UltraMegaSort 2000 (RRID:SCR_015857)
Curator: @scibot
SciCrunch record: RRID:SCR_015857
RRID:SCR_014307
DOI: 10.1016/j.neuron.2025.12.021
Resource: ScanImage (RRID:SCR_014307)
Curator: @scibot
SciCrunch record: RRID:SCR_014307
RRID:IMSR_JAX:031562
DOI: 10.1016/j.neuron.2025.12.021
Resource: (IMSR Cat# JAX_031562,RRID:IMSR_JAX:031562)
Curator: @scibot
SciCrunch record: RRID:IMSR_JAX:031562
RRID:IMSR_JAX:031629
DOI: 10.1016/j.neuron.2025.12.021
Resource: (IMSR Cat# JAX_031629,RRID:IMSR_JAX:031629)
Curator: @scibot
SciCrunch record: RRID:IMSR_JAX:031629
RRID:SCR_008394
DOI: 10.1016/j.neuron.2025.12.021
Resource: Python Programming Language (RRID:SCR_008394)
Curator: @scibot
SciCrunch record: RRID:SCR_008394
RRID:IMSR_JAX:007909
DOI: 10.1016/j.neuron.2025.12.021
Resource: RRID:IMSR_JAX:007909
Curator: @scibot
SciCrunch record: RRID:IMSR_JAX:007909
RRID:IMSR_JAX:010908
DOI: 10.1016/j.neuron.2025.12.021
Resource: (IMSR Cat# JAX_010908,RRID:IMSR_JAX:010908)
Curator: @scibot
SciCrunch record: RRID:IMSR_JAX:010908
RRID:IMSR_JAX:013044
DOI: 10.1016/j.neuron.2025.12.021
Resource: (IMSR Cat# JAX_013044,RRID:IMSR_JAX:013044)
Curator: @scibot
SciCrunch record: RRID:IMSR_JAX:013044
RRID:SCR_001622
DOI: 10.1016/j.neuron.2025.12.021
Resource: MATLAB (RRID:SCR_001622)
Curator: @scibot
SciCrunch record: RRID:SCR_001622
RRID:AB_2617116
DOI: 10.1016/j.neo.2026.101289
Resource: (Millipore Cat# CP06, RRID:AB_2617116)
Curator: @scibot
SciCrunch record: RRID:AB_2617116
RRID:SCR_003070
DOI: 10.1016/j.neo.2026.101289
Resource: ImageJ (RRID:SCR_003070)
Curator: @scibot
SciCrunch record: RRID:SCR_003070
RRID:AB_10694683
DOI: 10.1016/j.neo.2026.101289
Resource: (Cell Signaling Technology Cat# 5246, RRID:AB_10694683)
Curator: @scibot
SciCrunch record: RRID:AB_10694683
RRID:AB_11179073
DOI: 10.1016/j.neo.2026.101289
Resource: (Cell Signaling Technology Cat# 4351, RRID:AB_11179073)
Curator: @scibot
SciCrunch record: RRID:AB_11179073
RRID:AB_10544537
DOI: 10.1016/j.neo.2026.101289
Resource: (Cell Signaling Technology Cat# 4499, RRID:AB_10544537)
Curator: @scibot
SciCrunch record: RRID:AB_10544537
RRID:Addgene_133885
DOI: 10.1016/j.neo.2026.101289
Resource: None
Curator: @scibot
SciCrunch record: RRID:Addgene_133885
RRID:SCR_004463
DOI: 10.1016/j.neo.2026.101289
Resource: rna-star (RRID:SCR_004463)
Curator: @scibot
SciCrunch record: RRID:SCR_004463
RRID:AB_2616029
DOI: 10.1016/j.neo.2026.101289
Resource: (Cell Signaling Technology Cat# 9733, RRID:AB_2616029)
Curator: @scibot
SciCrunch record: RRID:AB_2616029
RRID:CVCL_0105
DOI: 10.1016/j.neo.2026.101289
Resource: (CLS Cat# 300168/p708_DU-145, RRID:CVCL_0105)
Curator: @scibot
SciCrunch record: RRID:CVCL_0105
RRID:AB_2877943
DOI: 10.1016/j.neo.2026.101289
Resource: None
Curator: @scibot
SciCrunch record: RRID:AB_2877943
RRID:AB_1030983
DOI: 10.1016/j.neo.2026.101289
Resource: (Cell Signaling Technology Cat# 2901, RRID:AB_1030983)
Curator: @scibot
SciCrunch record: RRID:AB_1030983
RRID:Addgene_48138
DOI: 10.1016/j.neo.2026.101289
Resource: RRID:Addgene_48138
Curator: @scibot
SciCrunch record: RRID:Addgene_48138
RRID:SCR_018361
DOI: 10.1016/j.neo.2026.101289
Resource: Biorender (RRID:SCR_018361)
Curator: @scibot
SciCrunch record: RRID:SCR_018361
RRID:SCR_003199
DOI: 10.1016/j.neo.2026.101289
Resource: Gene Set Enrichment Analysis (RRID:SCR_003199)
Curator: @scibot
SciCrunch record: RRID:SCR_003199
RRID:SCR_017757
DOI: 10.1016/j.neo.2026.101289
Resource: Wisconsin-Madison University Biotechnology Center Gene Expression Center Core Facility (RRID:SCR_017757)
Curator: @scibot
SciCrunch record: RRID:SCR_017757
RRID:SCR_012802
DOI: 10.1016/j.neo.2026.101289
Resource: edgeR (RRID:SCR_012802)
Curator: @scibot
SciCrunch record: RRID:SCR_012802
RRID:SCR_025085
DOI: 10.1016/j.neo.2026.101289
Resource: None
Curator: @scibot
SciCrunch record: RRID:SCR_025085
RRID:SCR_000262
DOI: 10.1016/j.neo.2026.101289
Resource: RSEM (RRID:SCR_000262)
Curator: @scibot
SciCrunch record: RRID:SCR_000262
RRID:SCR_002798
DOI: 10.1016/j.neo.2026.101289
Resource: GraphPad Prism (RRID:SCR_002798)
Curator: @scibot
SciCrunch record: RRID:SCR_002798
RRID:SCR_017799
DOI: 10.1016/j.neo.2026.101289
Resource: Wisconsin-Madison University Biotechnology Center Bioinformatics Resource Center Core Facility (RRID:SCR_017799)
Curator: @scibot
SciCrunch record: RRID:SCR_017799
RRID:CVCL_UE09
DOI: 10.1016/j.neo.2026.101288
Resource: (RRID:CVCL_UE09)
Curator: @scibot
SciCrunch record: RRID:CVCL_UE09
RRID:CVCL_0022
DOI: 10.1016/j.neo.2026.101288
Resource: (NIH-ARP Cat# 2188-324, RRID:CVCL_0022)
Curator: @scibot
SciCrunch record: RRID:CVCL_0022
RRID:AB_2631173
DOI: 10.1016/j.nbd.2026.107321
Resource: (Swant Cat# PV27, RRID:AB_2631173)
Curator: @scibot
SciCrunch record: RRID:AB_2631173
RRID:AB_2620171
DOI: 10.1016/j.nbd.2026.107321
Resource: (Sigma-Aldrich Cat# L-1516, RRID:AB_2620171)
Curator: @scibot
SciCrunch record: RRID:AB_2620171
Plasmid_111594
DOI: 10.1016/j.molcel.2026.01.025
Resource: None
Curator: @scibot
SciCrunch record: RRID:Addgene_111594
Plasmid_111593
DOI: 10.1016/j.molcel.2026.01.025
Resource: None
Curator: @scibot
SciCrunch record: RRID:Addgene_111593
RRID:AB_10697505
DOI: 10.1016/j.molcel.2026.01.025
Resource: (Cell Signaling Technology Cat# 5151, RRID:AB_10697505)
Curator: @scibot
SciCrunch record: RRID:AB_10697505
Plasmid_111595
DOI: 10.1016/j.molcel.2026.01.025
Resource: RRID:Addgene_111595
Curator: @scibot
SciCrunch record: RRID:Addgene_111595
RRID:AB_561053
DOI: 10.1016/j.molcel.2026.01.025
Resource: (Cell Signaling Technology Cat# 2118, RRID:AB_561053)
Curator: @scibot
SciCrunch record: RRID:AB_561053
RRID:SCR_015872
DOI: 10.1016/j.molcel.2026.01.022
Resource: UCSF ChimeraX (RRID:SCR_015872)
Curator: @scibot
SciCrunch record: RRID:SCR_015872
RRID:SCR_014224
DOI: 10.1016/j.molcel.2026.01.022
Resource: Phenix (RRID:SCR_014224)
Curator: @scibot
SciCrunch record: RRID:SCR_014224
RRID:SCR_014222
DOI: 10.1016/j.molcel.2026.01.022
Resource: Coot (RRID:SCR_014222)
Curator: @scibot
SciCrunch record: RRID:SCR_014222
RRID:SCR_016501
DOI: 10.1016/j.molcel.2026.01.022
Resource: cryoSPARC (RRID:SCR_016501)
Curator: @scibot
SciCrunch record: RRID:SCR_016501
RRID:SCR_003032
DOI: 10.1016/j.molcel.2026.01.018
Resource: Cytoscape (RRID:SCR_003032)
Curator: @scibot
SciCrunch record: RRID:SCR_003032
RRID:SCR_015687
DOI: 10.1016/j.molcel.2026.01.018
Resource: DESeq2 (RRID:SCR_015687)
Curator: @scibot
SciCrunch record: RRID:SCR_015687
RRID:SCR_016368
DOI: 10.1016/j.molcel.2026.01.018
Resource: Bowtie (RRID:SCR_005476)
Curator: @scibot
SciCrunch record: RRID:SCR_016368
RRID:SCR_017216
DOI: 10.1016/j.molcel.2026.01.018
Resource: RNAstructure (RRID:SCR_017216)
Curator: @scibot
SciCrunch record: RRID:SCR_017216
RRID:SCR_010910
DOI: 10.1016/j.molcel.2026.01.018
Resource: BWA (RRID:SCR_010910)
Curator: @scibot
SciCrunch record: RRID:SCR_010910
RRID:SCR_006646
DOI: 10.1016/j.molcel.2026.01.018
Resource: BEDTools (RRID:SCR_006646)
Curator: @scibot
SciCrunch record: RRID:SCR_006646
RRID:SCR_004463
DOI: 10.1016/j.molcel.2026.01.018
Resource: rna-star (RRID:SCR_004463)
Curator: @scibot
SciCrunch record: RRID:SCR_004463
RRID:SCR_021661
DOI: 10.1016/j.molcel.2026.01.018
Resource: None
Curator: @scibot
SciCrunch record: RRID:SCR_021661
RRID:SCR_012919
DOI: 10.1016/j.molcel.2026.01.018
Resource: featureCounts (RRID:SCR_012919)
Curator: @scibot
SciCrunch record: RRID:SCR_012919
RRID:SCR_016323
DOI: 10.1016/j.molcel.2026.01.018
Resource: StringTie (RRID:SCR_016323)
Curator: @scibot
SciCrunch record: RRID:SCR_016323
RRID:SCR_011848
DOI: 10.1016/j.molcel.2026.01.018
Resource: Trimmomatic (RRID:SCR_011848)
Curator: @scibot
SciCrunch record: RRID:SCR_011848
RRID:AB_2827592
DOI: 10.1016/j.molcel.2026.01.018
Resource: (ChromoTek Cat# gtd-10, RRID:AB_2827592)
Curator: @scibot
SciCrunch record: RRID:AB_2827592
RRID:SCR_003070
DOI: 10.1016/j.molcel.2026.01.018
Resource: ImageJ (RRID:SCR_003070)
Curator: @scibot
SciCrunch record: RRID:SCR_003070
RRID:AB_228341
DOI: 10.1016/j.molcel.2026.01.018
Resource: (Thermo Fisher Scientific Cat# 31460, RRID:AB_228341)
Curator: @scibot
SciCrunch record: RRID:AB_228341
RRID:CVCL_0030
DOI: 10.1016/j.molcel.2026.01.018
Resource: (ICLC Cat# HTL95023, RRID:CVCL_0030)
Curator: @scibot
SciCrunch record: RRID:CVCL_0030
RRID:AB_228307
DOI: 10.1016/j.molcel.2026.01.018
Resource: (Thermo Fisher Scientific Cat# 31430, RRID:AB_228307)
Curator: @scibot
SciCrunch record: RRID:AB_228307
RRID:SCR_015530
DOI: 10.1016/j.molcel.2026.01.018
Resource: HISAT2 (RRID:SCR_015530)
Curator: @scibot
SciCrunch record: RRID:SCR_015530
RRID:SCR_011841
DOI: 10.1016/j.molcel.2026.01.018
Resource: cutadapt (RRID:SCR_011841)
Curator: @scibot
SciCrunch record: RRID:SCR_011841
RRID:AB_2535789
DOI: 10.1016/j.molcel.2026.01.018
Resource: (Thermo Fisher Scientific Cat# A-21203, RRID:AB_2535789)
Curator: @scibot
SciCrunch record: RRID:AB_2535789
RRID:AB_94856
DOI: 10.1016/j.molcel.2026.01.018
Resource: (Millipore Cat# MAB3418, RRID:AB_94856)
Curator: @scibot
SciCrunch record: RRID:AB_94856
RRID:AB_3099527
DOI: 10.1016/j.molcel.2026.01.018
Resource: (Santa Cruz Biotechnology Cat# sc-398552, RRID:AB_3099527)
Curator: @scibot
SciCrunch record: RRID:AB_3099527
RRID:AB_1570640
DOI: 10.1016/j.molcel.2026.01.018
Resource: (MBL International Cat# RN007P, RRID:AB_1570640)
Curator: @scibot
SciCrunch record: RRID:AB_1570640
RRID:AB_627741
DOI: 10.1016/j.molcel.2026.01.018
Resource: (Santa Cruz Biotechnology Cat# sc-32315, RRID:AB_627741)
Curator: @scibot
SciCrunch record: RRID:AB_627741
RRID:AB_2564645
DOI: 10.1016/j.molcel.2026.01.018
Resource: (BioLegend Cat# 802001, RRID:AB_2564645)
Curator: @scibot
SciCrunch record: RRID:AB_2564645
RRID:AB_2535792
DOI: 10.1016/j.molcel.2026.01.018
Resource: (Thermo Fisher Scientific Cat# A-21206, RRID:AB_2535792)
Curator: @scibot
SciCrunch record: RRID:AB_2535792
RRID:AB_732777
DOI: 10.1016/j.molcel.2026.01.018
Resource: (Abcam Cat# ab32117, RRID:AB_732777)
Curator: @scibot
SciCrunch record: RRID:AB_732777
RRID:AB_2713978
DOI: 10.1016/j.molcel.2026.01.018
Resource: (Abcam Cat# ab186733, RRID:AB_2713978)
Curator: @scibot
SciCrunch record: RRID:AB_2713978
RRID:AB_2889877
DOI: 10.1016/j.molcel.2026.01.018
Resource: (Abcam Cat# ab68153, RRID:AB_2889877)
Curator: @scibot
SciCrunch record: RRID:AB_2889877
RRID:AB_2881629
DOI: 10.1016/j.molcel.2026.01.018
Resource: (Proteintech Cat# 66240-1-Ig, RRID:AB_2881629)
Curator: @scibot
SciCrunch record: RRID:AB_2881629
RRID:AB_2881926
DOI: 10.1016/j.molcel.2026.01.018
Resource: None
Curator: @scibot
SciCrunch record: RRID:AB_2881926
RRID:AB_2139794
DOI: 10.1016/j.molcel.2026.01.018
Resource: None
Curator: @scibot
SciCrunch record: RRID:AB_2139794
RRID:AB_2768234
DOI: 10.1016/j.molcel.2026.01.018
Resource: (ABclonal Cat# AC026, RRID:AB_2768234)
Curator: @scibot
SciCrunch record: RRID:AB_2768234
RRID:AB_3086012
DOI: 10.1016/j.molcel.2026.01.018
Resource: None
Curator: @scibot
SciCrunch record: RRID:AB_3086012
AB_11042881
DOI: 10.1016/j.molcel.2026.01.012
Resource: (Proteintech Cat# 50430-2-AP, RRID:AB_11042881)
Curator: @scibot
SciCrunch record: RRID:AB_11042881
Plasmid_123285
DOI: 10.1016/j.molcel.2026.01.012
Resource: RRID:Addgene_123285
Curator: @scibot
SciCrunch record: RRID:Addgene_123285
Plasmid_52961
DOI: 10.1016/j.molcel.2026.01.012
Resource: RRID:Addgene_52961
Curator: @scibot
SciCrunch record: RRID:Addgene_52961
Plasmid_8454
DOI: 10.1016/j.molcel.2026.01.012
Resource: RRID:Addgene_8454
Curator: @scibot
SciCrunch record: RRID:Addgene_8454
RRID:Addgene_71236
DOI: 10.1016/j.molcel.2026.01.012
Resource: RRID:Addgene_71236
Curator: @scibot
SciCrunch record: RRID:Addgene_71236
RRID:AB_2128522
DOI: 10.1016/j.molcel.2026.01.012
Resource: (Cell Signaling Technology Cat# 3230, RRID:AB_2128522)
Curator: @scibot
SciCrunch record: RRID:AB_2128522
RRID:AB_2756818
DOI: 10.1016/j.molcel.2026.01.012
Resource: (Abcam Cat# ab110411, RRID:AB_2756818)
Curator: @scibot
SciCrunch record: RRID:AB_2756818
RRID:AB_2622225
DOI: 10.1016/j.molcel.2026.01.012
Resource: (Cell Signaling Technology Cat# 14179, RRID:AB_2622225)
Curator: @scibot
SciCrunch record: RRID:AB_2622225
RRID:AB_2572291
DOI: 10.1016/j.molcel.2026.01.012
Resource: (Cell Signaling Technology Cat# 14793, RRID:AB_2572291)
Curator: @scibot
SciCrunch record: RRID:AB_2572291
RRID:AB_2137707
DOI: 10.1016/j.molcel.2026.01.012
Resource: (Cell Signaling Technology Cat# 3868, RRID:AB_2137707)
Curator: @scibot
SciCrunch record: RRID:AB_2137707
RRID:Addgene_58425
DOI: 10.1016/j.molcel.2026.01.012
Resource: RRID:Addgene_58425
Curator: @scibot
SciCrunch record: RRID:Addgene_58425
RRID:Addgene_177984
DOI: 10.1016/j.molcel.2026.01.012
Resource: RRID:Addgene_177984
Curator: @scibot
SciCrunch record: RRID:Addgene_177984
RRID:AB_2799696
DOI: 10.1016/j.molcel.2026.01.012
Resource: (Cell Signaling Technology Cat# 65880, RRID:AB_2799696)
Curator: @scibot
SciCrunch record: RRID:AB_2799696
RRID:AB_2935809
DOI: 10.1016/j.molcel.2026.01.012
Resource: (Cell Signaling Technology Cat# 80158, RRID:AB_2935809)
Curator: @scibot
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DOI: 10.1016/j.molcel.2026.01.012
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DOI: 10.1016/j.molcel.2026.01.012
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SciCrunch record: RRID:AB_10697667
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DOI: 10.1016/j.molcel.2026.01.012
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Curator: @scibot
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Curator: @scibot
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DOI: 10.1016/j.molcel.2026.01.012
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DOI: 10.1016/j.molcel.2026.01.012
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Curator: @scibot
SciCrunch record: RRID:AB_2085352