4,433 Matching Annotations
  1. Oct 2026
    1. VHL kindreds for germline mutations and calculated the age related tumour risks for different classes of VHL gene mutations.

      In a study of 138 unrelated VHL families, 109 germline mutations were found. Missense mutations were more frequently found in families with pheochromocytoma (PC). Deletions, nonsense, and frameshift mutations were more frequently found in families without PC. Large deletions and mutations predicted to cause truncated protein were associated with lower risk of PC. The mutation D121Mfs*38 (c.361delG) was referred to in the paper by c.574delG due to a difference in transcript sequence. This FS mutation found in a VHL family without PC (family ID 147).

    1. Table 1

      PatientID: N/A

      KindredID: 9

      Case: Sex Unknown, Age Unknown, Ethnicity Unknown

      DiseaseAssertion: VHL

      FamilyInfo: Family history not mentioned. Patient’s variant reported as germline.

      CasePresentingHPOs: N/A

      CaseHPOFreeText: Patient had VHL disease.

      CaseNotHPOs: N/A

      CaseNotHPOFreeText: N/A

      CasePreviousTesting: N/A

      PreviouslyPublished: 28388566

      SupplementalData:  N/A

      Variant: p.F76del (c.227_229del)

      LegacyVariant: N/A

      CaseProblemVariantFreeText: N/A

      ClinVarID: N/A

      CAID: CA357012, https://reg.clinicalgenome.org/redmine/projects/registry/genboree_registry/allele?hgvsOrDescriptor=NM_000551.3%3Ac.227_229delTCT

      gnomAD: N/A

      VariantEvidence: N/A

      MutationType: inframe_deletion

      CivicName: F76del (c.227_229del)

      MultipleGeneVariants: N/A

    1. Interestingly, one carrier of the deletion developed bilateral breast cancer at age 46 and 49. First cancer was diagnosed at the age of 46 in her right breast. The patient was treated by mastectomy with postoperative chemotherapy (CMF). Histopathological examination revealed invasive ductal breast carcinoma of 1.8 cm size. The tumor was ER- negative, and PR-negative (HER2 was not analyzed). A metastasis in 1 axillary lymph node was found. There was no evidence of distant metastases. The tumor was classified as T1c pN1a M0, stage IIA; grade G2. Three years later, at the age of 49, she was diagnosed with cancer of her left breast. It was an invasive ductal carcinoma of 2.0 cm size. The tumor was ER-positive, PR-positive, and HER2-negative. There was no evidence for lymph-node or distant metastases. The tumor was classified as T1c pN 0 M0, stage IA, grade G2 and treated with mastectomy and tamoxifen. Ki67 expression was not tested. At present, 9 and 6 years after treatment of the breast cancers there is no evidence of breast cancer recurrence. However at age of 54, lesions typical for VHL disease including cerebellar haemangioblastoma and renal cell carcinoma were diagnosed in the patient.

      PatientID: 2

      KindredID: 1

      Case: F, 54Y0M, Ethnicity Unknown

      DiseaseAssertion: VHL

      FamilyInfo: Son (id:1) with the same variant, presenting with cerebellar hemangioblastoma at age 18, spinal hemangioblastomas at ages 19 and 31 and renal cysts but the age of onset for these is not noted. Father (id: 3) presented with cerebellar hemangioblastoma at age 65. Paternal uncle (id: 4) presented with prostate cancer at age 65. Paternal grandfather (id: 5) presented with cerebellar hemangioblastomas at age 69. Mother and daughter did not have the mutation. Her father was not tested. No family history of retinal capillary hemangiomas or pheochromocytoma.

      CasePresentingHPOs: HP:0006880; HP:0005584; HP:0003002 (Cerebellar hemangioblastoma, Renal cell carcinoma, Breast carcinoma)

      CaseHPOFreeText: Bilateral breast cancer at age 46 and 49. First cancer was diagnosed at the age of 46 in her right breast. The patient was treated by mastectomy with postoperative chemotherapy (CMF). Histopathological examination revealed invasive ductal breast carcinoma. A metastasis in 1 axillary lymph node was found. There was no evidence of distant metastases. Three years later, at the age of 49, she was diagnosed with cancer of her left breast. It was an invasive ductal carcinoma. There was no evidence for lymph-node or distant metastases. At present, 9 and 6 years after treatment of the breast cancers there is no evidence of breast cancer recurrence. However at age of 54, lesions typical for VHL disease including cerebellar haemangioblastoma and renal cell carcinoma were diagnosed in the patient.

      CaseNotHPOs: HP:0002666; HP:0009711 (Pheochromocytoma, Retinal capillary hemangioma)

      CaseNotHPOFreeText: N/A

      CasePreviousTesting: N/A

      PreviouslyPublished: N/A

      SupplementalData: Figure 1 (pedigree) and Table 1 (phenotype and age of onset data).

      Variant: Exon 1 Deletion (c.1-?_340+?del)

      LegacyVariant: N/A

      CaseProblemVariantFreeText: N/A

      ClinVarID: N/A

      CAID: N/A

      gnomAD: N/A

      VariantEvidence: N/A

      MutationType: exon_loss_variant

      CivicName: Exon 1 Deletion

      MultipleGeneVariants: Germline, FANCD2, Partial Deletion

    1. PatientID: 146

      KindredID: 52

      Case: M, Age Unknown, Chinese

      DiseaseAssertion: Asymptomatic

      FamilyInfo: The proband (patient 138) had multiple family members affected with the mutation. Their daughter (pt 139) was asymptomatic at the time of assessment; their son (pt 140) was also asymptomatic at the time of assessment; their mother (pt 141) presented with a CNS hemangioblastoma at 66, renal cell carcinoma at 69, and multiple pancreatic cysts/tumors at 66; their sister 1 (pt 142) presented with a CNS hemangioblastoma at 32, renal cell carcinoma at 36, and multiple pancreatic cysts/tumors at 36; the son of sister 1 was asymptomatic at the time of analysis; the daughter of sister 1 was asymptomatic at the time of analysis; the proband's sister 2 presented at age 39 with CNS hemangioblastoma, renal cell carcinoma, and multiple pancreatic cysts/tumors; and the son of sister 2 was asymptomatic at the time of analysis. All members of this family were genetically confirmed to have this mutation.

      CasePresentingHPOs: N/A

      CaseHPOFreeText: The proband's nephew (son of sister 2) was asymptomatic at the time of assessment.

      CaseNotHPOs: HP:0010797; HP:0005584; HP:0001737; HP:0001732; HP:0002666; HP:0009711 (Hemangioblastoma, Renal cell carcinoma, Pancreatic cysts, Abnormality of the pancreas, Pheochromocytoma, Retinal capillary hemangioma)

      CaseNotHPOFreeText: N/A

      CasePreviousTesting: N/A

      PreviouslyPublished: This patient was also published in a later paper by Wang et al., 2018 (PMID: 29330336).

      SupplementalData: Patient and family genotype-phenotype information is listed in Supplementary Table 1.

      Variant: c.464-1G>C

      LegacyVariant: N/A

      CaseProblemVariantFreeText: N/A

      ClinVarID: 223220; https://www.ncbi.nlm.nih.gov/clinvar/variation/223220/

      CAID: N/A

      gnomAD: N/A

      VariantEvidence: N/A

      MutationType: splice_site_variant

      CivicName: Splice Site (c.464-1G>C)

      MultipleGeneVariants: N/A

    2. PatientID: 184

      KindredID: 71

      Case: M, Age 27Y0M, Chinese

      DiseaseAssertion: VHL

      FamilyInfo: The proband's mother (patient 185) was confirmed with the mutation but was asymptomatic at the time of testing. The proband (patient 184) presented with renal cell carcinoma at 27, and multiple pancreatic cysts/tumors and a pheochromocytoma at age 24.

      CasePresentingHPOs: HP:0005584, HP:0002666, HP:0001737, HP:0001732 (Renal cell carcinoma, Pheochromocytoma, Pancreatic cysts, Abnormality of the pancreas)

      CaseHPOFreeText: The proband presented with renal cell carcinoma at 27, and multiple pancreatic cysts/tumors and a pheochromocytoma at age 24.

      CaseNotHPOs: HP:0010797; HP:0009711 (Hemangioblastoma, Retinal capillary hemangioma)

      CaseNotHPOFreeText: N/A

      CasePreviousTesting: N/A

      PreviouslyPublished: This patient was also published in an earlier paper by Wang et al., 2014 (PMID 24581539) as well as a later paper by Wang et al., 2018 (PMID: 29330336).

      SupplementalData: Patient and family genotype-phenotype information is listed in Supplementary Table 1.

      Variant: p.R167W (c.499C>T)

      LegacyVariant: N/A

      CaseProblemVariantFreeText: N/A

      ClinVarID: 2218; https://www.ncbi.nlm.nih.gov/clinvar/variation/2218/

      CAID: N/A

      gnomAD: 0.000007954; https://gnomad.broadinstitute.org/variant/3-10191506-C-T?dataset=gnomad_r2_1

      VariantEvidence: N/A

      MutationType: missense_variant;transition

      CivicName: R167W (c.499C>T)

      MultipleGeneVariants: N/A

    3. PatientID: 265

      KindredID: 104

      Case: M, 48Y0M, Chinese

      DiseaseAssertion: VHL

      FamilyInfo: The proband (patient 265) has multiple family members who presented with VHL symptoms but were unconfirmed with the mutation, due to no DNA sample being available or due to death before diagnosis. The proband's son (patient 266) presented with a CNS hemangioblastoma at 19 and retinal angioma at 27. Their first brother (brother 1, patient 267) presented with a CNS hemangioblastoma at 36 and a retinal angioma at 46. Their nephew (son of brother 1, patient 267) presented with a retinal angioma at 16. Their second brother (brother 2, patient 268) had a CNS hemangioblastoma at 30, retinal angioma at 20, and renal cell carcinoma at 41. The proband's second nephew (son of brother 2, patient 269) had a retinal angioma at age 16.

      CasePresentingHPOs: HP:0001737; HP:0001732; HP:0005584; HP:0002666 (Pancreatic cysts, Abnormality of the pancreas, Renal cell carcinoma, Pheochromocytoma)

      CaseHPOFreeText: The proband presented at age 48 with renal cell carcinoma, multiple pancreatic cysts/tumors, and pheochromocytoma.

      CaseNotHPOs: HP:0009711; HP:0010797 (Retinal capillary hemangioma, Hemangioblastoma)

      CaseNotHPOFreeText: N/A

      CasePreviousTesting: N/A

      PreviouslyPublished: This cohort was also published in a later paper by Wang et al., 2018 (PMID: 29330336).

      SupplementalData: Patient and family genotype-phenotype information is listed in Supplementary Table 1.

      Variant: Exon 2 Deletion (c.341-?_463+?del)

      LegacyVariant: N/A

      CaseProblemVariantFreeText: N/A

      ClinVarID: N/A

      CAID: N/A

      gnomAD: N/A

      VariantEvidence: N/A

      MutationType: exon_loss_variant

      CivicName: Exon 2 Deletion

      MultipleGeneVariants: N/A

    4. PatientID: 26

      KindredID: 8

      Case: M, 66Y0M, Chinese

      DiseaseAssertion: VHL

      FamilyInfo: N/A

      CasePresentingHPOs: HP:0001737; HP:0001732; HP:0005584; HP:0009711; HP:0010797 (Pancreatic cysts, Abnormality of the pancreas, Renal cell carcinoma, Retinal capillary hemangioma, Hemangioblastoma)

      CaseHPOFreeText: The proband, patient 26, presented with CNS hemangioblastoma at age 66, retinal angioma at age 66, renal cell carcinoma at age 37, and pancreatic cysts/ tumors at age 54.

      CaseNotHPOs: HP:0002666 (Pheochromocytoma)

      CaseNotHPOFreeText: N/A

      CasePreviousTesting: N/A

      PreviouslyPublished: This patient was also published in a later paper by Wang et al., 2018 (PMID: 29330336), and was likely previously published in Wang et al 2014 (24581539).

      SupplementalData: Patient and family genotype-phenotype information is listed in Supplementary Table 1.

      Variant: p.Q73* (c.217C>T)

      LegacyVariant: N/A

      CaseProblemVariantFreeText: N/A

      ClinVarID: 223164; https://www.ncbi.nlm.nih.gov/clinvar/variation/223164/

      CAID: N/A

      gnomAD: N/A

      VariantEvidence: N/A

      MutationType: missense_variant;transition

      CivicName: Q73* (c.217C>T)

      MultipleGeneVariants: N/A

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    1. B1 Spinal 28 c.582_589delGACACAC N/A 5 y 10 m 

      PatientID: B1

      KindredID: 1

      Case: Sex Unknown, 28Y0M, Ethnicity Unknown

      DiseaseAssertion: Assumed VHL

      FamilyInfo: No testing

      CasePresentingHPOs: HP:0009713, HP:0000107, HP:0001737 (spinal hemangioblastoma, renal cyst, pancreatic cyst)

      CaseHPOFreeText: N/A

      CaseNotHPOs: N/A

      CaseNotHPOFreeText: no other clinical features were found after the cerebellar hemangioblastoma during 5 years 10 months of follow-up

      CasePreviousTesting: N/A

      PreviouslyPublished: N/A

      SupplementalData: N/A

      Variant: p.T124Mfs*33 (c.369_375del)

      LegacyVariant: c.582_589delGACACAC

      ClinVarID: N/A

      CAID: CA913189240 https://reg.clinicalgenome.org/redmine/projects/registry/genboree_registry/allele?hgvsOrDescriptor=NM_000551.3%3Ac.369_375del

      gnomAD: N/A

      VariantEvidence: N/A

      MutationType: minus_1_frameshift_variant

      CivicName: T124Mfs*33(c.369_375del)

      MultipleGeneVariants: N/A

    1. Genomic DNA was isolated from peripheral blood samples by Qiagen DNA Blood mini kit (Qiagen, Hilden, Germany) following the manufacturer’s instruction. Genomic DNA (50–100 ng) was amplified by PCR in a standard PCR buffer containing 200 μM per each dNTPs, 1.5 mM MgCl2, 0.25 units of Taq polymerase and 0.2 μM per each primers with the thermal cycling program of 95 °C for 30 s, 60 °C for 30 s and 72 °C for 30 s for 30 cycles. PCR products were purified and sequenced in an ABI 3730 automated sequencer (ABI, Foster City, CA, USA). The primer pairs used for the amplification of the three exons and their flanking introns of VHL gene were 1F: 5′-IndexTermggtggtctggatcgcgga-3′ and 1R: 5′-IndexTermggcttcagaccgtgctatcg-3′ (product size 418bp), 2F: 5′-IndexTermgtggctctttaacaacctttgc-3′ and 2R: 5′-IndexTermcctgtacttaccacaacaaccttatc-3′ (product size 208 bp), and 3F: 5′-IndexTermgcaaagcctcttgttcgttc-3′ and 3R: 5′-IndexTermcaaaaatgccaccaccttct-3′ (product size 504 bp).

      ArticleReferenceSequence: Not specified – Assumption: variants assumed to have been documented by the author under reference sequence NM_000551.3

      GenotypingMethod: Genomic DNA was amplified by PCR and the products were purified and sequenced in an ABI 3730 automated sequencer (ABI, Foster City, CA, USA). UPQFM-PCR was also used to detect large deletions and insertions in the three exons of the VHL gene.

      SamplingMethod: peripheral blood

    1. C.292T > A, p.Tyr98Asn

      Using polymerase chain reaction (PCR)-direct sequencing and universal primer quantitative fluorescent multiplex–PCR, mutations in VHL gene in 19 VHL disease families recruited from the Department of Urology, Peking University First Hospital in the period from 2009 to 2012 were examined. One proband and their sister (family 1) were found to carry the mutation c.292T>A in exon 1 of the VHL gene. The proband presented with hemangioblastoma at age 35, retinal angioma and pancreatic cysts or tumours at age 37, and renal cell carcinoma at age 39. The patient had positive VHL family history and their first sister also carried this germline mutation but was asympromatic. Patient's mother did not undergo genetic testing but had a hemangioblastoma at age 50 and a pancreatic cyst or tumour at age 62. Another one of the patient's sisters presented with hemangioblastoma (age 40), renal cell carcinoma (age 43), and pancreatic cysts or tumours (age 43). This patient died before diagnosis. The proband's brother also died before diagnosis and presented with hemangioblastoma and retinal angioma at age 27.This family was previously published in 29330336.

    1. The cytosine replaced the 716th guanine on four patients and three carriers of virulence gene from the first family, which made the 168th serine replaced by threonine.

      This study shows the clinical characteristics of three large Chinese families with VHL disease and evaluates the consequence of the genetic test for the diagnosis of VHL disease and clinical screening of the family members. DNA is extracted from peripheral blood in 43 members from three large families with VHL disease and amplified by PCR to three exons of the VHL gene. The PCR products were directly sequenced and the mutations compared with the Human Gene Mutation Database. The ages of the patients who are given the initial diagnosis ranged from 16 to 47 years (mean: 31 years), and the mean time was 17.3 months (2-30 months) from the emergence of the symptom to patients' first visit. Furthermore, the gender distribution was 20% female (4) and 80% male (16). Von Hippel-Lindau disease is seen in 12 members of a Chinese family. Molecular diagnosis is confirmed in only 7 family members. The proband (male; deceased) has retinal capillary hemangioma; hemangioblastoma, 2 of his brothers (deceased) have pancreatic cancer, a third brother has renal cancer and hemangioblastoma, and 5 nephews have hemangioblastoma. There are three members who are asymptomatic carriers, but are young and may be before the age of onset. The mutation p.S168T (c.503G>C) was referred to in the paper by c.716G>C due to a difference in transcript sequence. At least 5 additional members had VHL phenotypes, but had all passed away before genetic testing. It could be assumed their genetic mutation due to pedigree showing future linear relations of this mutation all in generation III. ACMG evidence codes: 'PP1' based on segregation results, 'PP2' because they observe a missense variant in gene where missense variants are common mechanism of disease, 'PP4' because the patients phenotypes and family history are highly specific for a disease with single genetic etiology.

    1. GroupID: V43

      DiseaseAssertion: VHL

      GroupSize: 4

      GroupNumberMales: N/A

      GroupNumberFemales: N/A

      GroupEthnicity: French

      GroupAgeRange: N/A

      GroupInfo: Patients are grouped by family.

      FamilyInfo: 4/7 members of this family that underwent genetic testing had the same mutation.

      GroupPresentingHPOs: N/A

      GroupHPOFreeText: Diagnosed with VHL Type 1.

      GroupNotHPOs: HP:0002666 (Pheochromocytoma)

      GroupNotHPOFreeText: N/A

      GroupPreviousTesting: N/A

      PreviouslyPublished: Likely 15300849

      SupplementalData: N/A

      Variant: p.L158dup (c.473_474insTTT)

      LegacyVariant: N/A

      CaseProblemVariantFreeText: N/A

      ClinVarID: N/A

      CAID: CA2573320246, https://reg.clinicalgenome.org/redmine/projects/registry/genboree_registry/by_caid?caid=CA2573320246

      gnomAD: N/A

      VariantEvidence: N/A

      MutationType: inframe_insertion

      CivicName: L158dup (c.473_474insTTT)

      MultipleGeneVariants: N/A

    1. In 2012, A blood DNA sequencing analysis revealed a pathogenic VHL mutation c. 232A>T; p. Asn78Tyr in this patient. The same point mutation of VHL was identified in three family members including one sister, one brother and one nephew.

      PatientID: N/A (proband's nephew)

      KindredID: 2

      Case: M, Age Unknown, Ethnicity Unknown

      DiseaseAssertion: assumed VHL

      FamilyInfo: The same point mutation of VHL (c. 232A>T; p.Asn78Tyr) was identified in three family members: 2 female and 1 male (one of which is his parent). His grandmother died of stroke at early of 50 years.

      CasePresentingHPOs: unknown

      CaseHPOFreeText: refused for further examinations for VHL-related lesions.

      CaseNotHPOs: N/A

      CaseNotHPOFreeText: N/A

      CasePreviousTesting: N/A

      PreviouslyPublished: N/A

      SupplementalData: N/A

      Variant: p.N78Y (c.232A>T)

      LegacyVariant: N/A

      ClinVar: 223167 https://www.ncbi.nlm.nih.gov/clinvar/variation/223167/

      CAID: CA357056 http://reg.clinicalgenome.org/redmine/projects/registry/genboree_registry/allele?hgvsOrDescriptor=NM_000551.3%3Ac.232A%3ET

      gnomAD: N/A

      VariantEvidence: N/A

      MutationType: missense_variant; transversion

      CivicName: N78Y (c.232A>T)

      MultipleGeneVariants: N/A

    1. 4 I 7 Dead at age 53 years 2 retinal hb (7 + 14 years) M c.407 T > C (p.Phe136Ser)

      PatientID: I

      KindredID: 4

      Case: Sex Unknown, 53Y0M, Danish

      DiseaseAssertion: VHL

      FamilyInfo: N/A

      CasePresentingHPOs: HP:0009711 (Retinal capillary hemangioma)

      CaseHPOFreeText: Diagnosed with VHL at age 7Y. Presented with retinal hemangioblastoma at 7Y and 14Y. Age of death: 53Y.

      CaseNotHPOs: N/A

      CaseNotHPOFreeText: N/A

      CasePreviousTesting: N/A

      PreviouslyPublished: N/A

      SupplementalData: N/A

      Variant: p.F136S (c.407T>C)

      LegacyVariant: N/A

      CaseProblemVariantFreeText: N/A

      ClinVarID: 496064, https://www.ncbi.nlm.nih.gov/clinvar/variation/496064/

      CAID: N/A

      gnomAD: N/A

      VariantEvidence: N/A

      MutationType: missense_variant;transition

      CivicName: F136S (c.407T>C)

      MultipleGeneVariants: N/A

    1. Genomic DNA was extracted from peripheral blood leukocytes. Mutation analysis involved DNA sequencing, while large deletions were determined by universal primer quantitative fluorescent multiplex polymerase chain reaction (UPQFM-PCR) and multiplex ligation-dependent probe amplification (MLPA) analysis.

      ArticleReferenceSequence: NM_000551.3

      GenotypingMethod: The three exons and flanking regions of the VHL gene were amplified by PCR. Universal primer quantitative fluorescent multiplex polymerase chain reaction (UPQFM-PCR) and multiplex ligation-dependent probe amplification (MLPA) analysis

      SamplingMethod: peripheral blood leukocytes

    1. 2 (66.7)

      GroupID: 14a

      DiseaseAssertion: VHL

      GroupSize: 2

      GroupNumberMales: N/A

      GroupNumberFemales: N/A

      GroupEthnicity: N/A

      GroupAgeRange: N/A

      GroupInfo: a retrospective cohort study from an eye centre in Germany involved 148 VHL patients and their genetic data involved in retinal capillary hemangiomas.

      GroupPresentingHPOs: HP:0009711 (retinal capillary hemangioma)

      GroupHPOFreeText: These 2/3 patients with a Q164* (c.490C>T) mutation had retinal capillary hemangiomas. Other VHL manifestations were discussed but not per- variant.

      GroupNotHPOs: N/A

      GroupNotHPOFreeText: N/A

      GroupPreviousTesting: N/A

      PreviouslyPublished: N/A

      SupplementalData: N/A

      Variant: p.Q164* (c.490C>T)

      LegacyVariant: N/A

      GroupProblemVariantFreeText: N/A

      ClinVarID: 223228 https://www.ncbi.nlm.nih.gov/clinvar/variation/223228/

      CAID: N/A

      gnomAD: N/A

      VariantEvidence: N/A

      MutationType: stop_gained

      CivicName: Q164* (c.490C>T)

      MultipleGeneVariants: N/A

    1. In a study of 114 unrelated VHL families, 85 germline mutations were found. VHL mutations were detected in affected family members, but not in unaffected family members or 96 normal individuals. This frameshift mutation was found in 2 VHL type 1 family of 8 and of 7 individuals (family ID 2956; 2693), using PCR and SSCP sequencing. The mutation of c.226_228delTTC was referred to in the paper by c.439delTTC due to a difference in transcript sequence. In the first, Family 2956, 2/8 members had a retinal angioma (hemangioma), 4 had RCC, and 5 members had CNS hemangioblastoma. In Family 2693 3/7 members had a retinal angioma (hemangioma), 3 had RCC, and 3 members had CNS hemangioblastoma. This is possibly previously published in PMID 9829911, as well as one member in a future publication: PMID: 32179488

    1. PatientID: A-V5

      KindredID: A-V5

      Case: F, 37Y0M, Korean

      DiseaseAssertion: VHL

      FamilyInfo: N/A

      CasePresentingHPOs: HP:0002666; HP:0030405 (Pheochromocytoma, Pancreatic endocrine tumor)

      CaseHPOFreeText: Bilateral pheochromocytoma and pancreatic islet cell carcinoma. Diagnosed with VHL type 2.

      CaseNotHPOs: HP:0010797; HP:0009711; HP:0001737; HP:0005584 (Hemangioblastoma, Pancreatic cysts, Renal cell carcinoma)

      CaseNotHPOFreeText: N/A

      CasePreviousTesting: N/A

      PreviouslyPublished: 25078357

      SupplementalData: N/A

      Variant: p.A149T (c.445G>A)

      LegacyVariant: N/A

      CaseProblemVariantFreeText: N/A

      ClinVarID: 223213, https://www.ncbi.nlm.nih.gov/clinvar/variation/223213/

      CAID: N/A

      gnomAD: N/A

      VariantEvidence: N/A

      MutationType: missense_variant;transition

      CivicName: A149T (c.445G>A)

      MultipleGeneVariants: N/A

    1. Molecular and clinical analysis of 126 French VHL families tested for renal involvement revealed 92 different mutations. 90 of these families had renal involvement. The p.P71Lfs*61 (c.211_212insT) germline variant of the VHL gene was detected in a family (ID 96). Members 5997 and 5993 have unknown renal involvement. Member 5999 presented with mild renal disease. The paper states that this family is previously reported in PMID 12202531, where 1 patient with this mutation is reported and assumed to be part of this family.

    2. GroupID: 411

      DiseaseAssertion: VHL

      GroupSize: 2

      GroupNumberMales: N/A

      GroupNumberFemales: N/A

      GroupEthnicity: French

      GroupAgeRange: N/A

      GroupInfo: 3 members of this family were found to have the c.500G>A germline variant of the VHL gene. Member 9710 presented with mild renal disease (RCC) and members 13888 and 12271 had unknown renal involvement. Families were recruited from the French VHL Registry. Enrolment in the study required identification of the germline VHL mutation (currently 85% of the families included in the French VHL Registry) and available data regarding renal phenotype. A total of 126 families fulfilled these criteria.

      GroupPresentingHPOs: HP:0005584 (Renal cell carcinoma)

      GroupHPOFreeText: Mild renal disease (simple renal cyst, multicystic kidney[s], small lesion [less than 10 mm in size] of unknown significance, or small solid tumor without indication for surgical removal [less than 30 mm in size]).

      GroupNotHPOs: N/A

      GroupNotHPOFreeText: N/A

      GroupPreviousTesting: N/A

      PreviouslyPublished: N/A

      SupplementalData: Phenotype and genotype information can be found in Supplementary Table S1.

      Variant: p.R167Q (c.500G>A)

      LegacyVariant: N/A

      CaseProblemVariantFreeText: N/A

      ClinVarID: 2216, https://www.ncbi.nlm.nih.gov/clinvar/variation/2216/

      CAID: N/A

      gnomAD: 0.000003977, https://gnomad.broadinstitute.org/variant/3-10191507-G-A

      VariantEvidence: N/A

      MutationType: missense_variant;transition

      CivicName: R167Q (c.500G>A)

      MultipleGeneVariants: N/A

    3. GroupID: 313

      DiseaseAssertion: VHL

      GroupSize: 3

      GroupNumberMales: N/A

      GroupNumberFemales: N/A

      GroupEthnicity: French

      GroupAgeRange: N/A

      GroupInfo: 3 members of this family were found to harbor the c.340+1_340+5delGTACG germline variant of the VHL gene. Members 7171 and 7170 had unknown renal involvement. Member 5545 presented with severe renal disease (RCC). Families were recruited from the French VHL Registry. Enrolment in the study required identification of the germline VHL mutation (currently 85% of the families included in the French VHL Registry) and available data regarding renal phenotype. A total of 126 families fulfilled these criteria.

      GroupPresentingHPOs: HP:0005584 (Renal cell carcinoma)

      GroupHPOFreeText: Moderate renal disease (less than five solid lesions requiring surgical treatment, either unilateral or bilateral).

      GroupNotHPOs: N/A

      GroupNotHPOFreeText: N/A

      GroupPreviousTesting: N/A

      PreviouslyPublished: Paper states that this family is previously reported in PMID 9829912, where 1 individual is reported to have the “IVS1+1del5” splice site variant which is assumed to correspond to a member of the current family.

      SupplementalData: Phenotype and genotype information can be found in Supplementary Table S1.

      Variant: c.340+2_340+6del

      LegacyVariant: N/A

      CaseProblemVariantFreeText: N/A

      ClinVarID: N/A

      CAID: CA357098, https://reg.clinicalgenome.org/redmine/projects/registry/genboree_registry/allele?hgvsOrDescriptor=NM_000551.3%3Ac.340%2B1_340%2B5del

      gnomAD: N/A

      VariantEvidence: Variant is reported as c.340+1_340+5del and was mapped to c.340+2_340+6del. Authors state that this mutation is predicted to disturb the splicing process.

      MutationType: splice_site_variant; deletion; minus_2_frameshift_variant

      CivicName: Splice Site (c.340+2_340+6del)

      MultipleGeneVariants: N/A

    4. PatientID: 13773

      KindredID: 599

      Case: Sex Unknown, Age Unknown, French

      DiseaseAssertion: VHL

      FamilyInfo: N/A

      CohortInfo: Families were recruited from the French VHL Registry. Enrolment in the study required identification of the germline VHL mutation (currently 85% of the families included in the French VHL Registry) and available data regarding renal phenotype. A total of 126 families fulfilled these criteria.

      CasePresentingHPOs: HP:0005584 (Renal cell carcinoma)

      CaseHPOFreeText: Moderate renal disease (less than five solid lesions requiring surgical treatment, either unilateral or bilateral). Individual RCC phenotype is noted as positive.

      CaseNotHPOs: N/A

      CaseNotHPOFreeText: N/A

      CasePreviousTesting: N/A

      PreviouslyPublished: N/A

      SupplementalData: Phenotype and genotype information can be found in Supplementary Table S1.

      Variant: p.F76_C77del (c.226_231del)

      LegacyVariant: N/A

      CaseProblemVariantFreeText: N/A

      ClinVarID: N/A

      CAID: CA2573130179, https://reg.clinicalgenome.org/redmine/projects/registry/genboree_registry/by_caid?caid=CA2573130179

      gnomAD: N/A

      VariantEvidence: N/A

      MutationType: inframe_deletion; deletion

      CivicName: F76_C77del (c.226_231del)

      MultipleGeneVariants: N/A

    1. In four families, partial deletions of one or more exons were detected by Southern blot analysis

      PatientID: unknown (brother)

      KindredID: A

      Case: M (deceased), Age unknown, Turkish

      DiseaseAssertion: assumed VHL

      FamilyInfo: 5 family members are grouped with this deletion (ages 16-37Y; mean 31Y). VHL was clinically diagnosed in, at minimum, the proband. See Fig. 2 for family pedigree. This patient and his one brother were not tested for the DNA deletion however it is assumed by the authors due to the segregation observed.

      CasePresentingHPOs: HP:0010797 (hemangioblastoma)

      CaseHPOFreeText: N/A

      CaseNotHPOs: HP:0009711; HP:0002666; HP:0005584 (retinal capillary hemangioma; pheochromocytoma; renal cell carcinoma)

      CaseNotHPOFreeText: N/A

      CasePreviousTesting: N/A

      PreviouslyPublished: N/A

      SupplementalData: N/A

      Variant: Deletion of exons 1 and 2

      CaseProblemVariantFreeText: N/A

      LegacyVariant: N/A

      ClinVarID: N/A

      CAID: N/A

      gnomAD: N/A

      VariantEvidence: not tested for the DNA deletion however it is assumed by the authors due to the segregation observed.

      MutationType: exon_loss_variant

      CivicName: exon 1-2 deletion

      MultipleGeneVariants: N/A

    1. Ninety-eight individuals were tested for VHL mutations--23 symptomatic and 75 asymptomatic individuals belonging to 16 families. Seven of the families had definite clinical criteria of VHL disease, five had sporadic hemangioblastoma, and four had CNS hemangioblastoma combined with minor visceral signs. Molecular genetic testing identified five germline mutations in six of the definite VHL families (sensitivity 85%), but none in the possible VHL and sporadic hemangioblastoma cases; four of these mutations had been previously described and one is a novel mutation present in two unrelated families. After patients carrying the mutation were identified, they underwent clinical screening and asymptomatic VHL-related lesions were identified in 43%.

      Patients presenting with cerebellar hemangioblastomas at the Mexican National institute of Neurology and Neurosurgery to were prospectively enrolled alongside family members, resulting in 84 patients in 7 families with VHL mutations, and subjected to peripheral blood draw and PCR-based mutation screening, as well as full clinical screening for symptomatic individuals. 19 individuals across two families (Family B and Family C) presented with a c.298dupA mutation, leading to a frameshift (p.T100Nfs 32). Among these individuals, 2 in Family B and 6 in Family C were asymptomatic at the time of screening (ages 2, 7, 9, 12, 13, 17, 20, and 29). Of the 4 symptomatic individuals in Family B, one presented at 44 with cerebellar hemangioblastoma and bilateral retinal angiomas; one presented at 16 with 4 cerebellar hemangioblastomas, 1 bulbar hemangioblastoma, 1 spinal hemangioblastoma, bilateral retinal angiomas, pancreatic cysts, and kidney cysts; one presented at age 26 with cerebellar hemangioblastoma, bilateral retinal angiomas, pancreatic cysts, kidney cysts, and renal cell carcinoma; and one presented at 28 with 1 cerebellar hemangioblastoma. Of the 7 symptomatic individuals in Family C, one presented at 45 with cerebellar hemangioblastoma, pancreatic cysts, kidney cysts, and renal cell carcinoma; one presented at age 21 with epididymal cystadenoma; one presented at 36 with 2 cerebellar hemangioblastomas, pancreatic cysts, kidney cysts, hepatic cysts, adrenal cysts, and bilateral renal cell carcinomas; one presented at 20 with spinal hemangioblastoma, pancreatic cysts, and kidney cysts; one presented at 13 with 2 spinal hemangioblastomas, one presented at 13 with cerebellar hemangioblastoma, one presented at 30 with cerebellar hemangioblastoma, pancreatic cysts, and kidney cysts. They were previously published in PMID: 20064270, however with a reportedly different variant: p.G34Rfs98 (c.99_100insA).

    1. c.500G > A p.Arg167Gln

      GroupID: 19

      DiseaseAssertion: assumed VHL

      GroupSize: 24

      GroupNumberMales: N/A

      GroupNumberFemales: N/A

      GroupEthnicity: Chinese

      GroupAgeRange: 47.8Y +/- 12.7Y

      GroupInfo: Clinical characteristics of 258 patients from 80 unrelated Chinese families were reported in this study. Grouped by the 21 mutations found, 10 families with 24 members total were described, and phenotypic information was given for this group.

      GroupPresentingHPOs: HP:0010797; HP:0009711; HP:0005584; HP:0001737; HP:0002666 (hemangioblastoma, retinal capillary hemangioma, renal cell carcinoma, pancreatic cysts, pheochromocytoma)

      GroupHPOFreeText: 15 of the 24 members presented with CNS hemangioblastoma (with a mean age of onset of 35.6Y), retinal capillary hemangioma in 4 members (at the mean age of 23.0Y), renal cell carcinoma in 10 members (at the mean age of 38.3Y), pancreatic cysts in 5 members (at the mean age of 37.2Y), and pheochromocytoma in 9 members (at the mean age of 36.3Y)

      GroupNotHPOs: HP:0009715 (papillary cystadenoma of the epididymis)

      GroupNotHPOFreeText: No members had a papillary cystadenoma of the epididymis genital system tumor (epididymis or broad ligament)

      GroupPreviousTesting: N/A

      PreviouslyPublished: 24581539 (family #11); 29330336 (as 7 families of 18 people); 28388566 (family #78, 79, 80, 81, 82, 83)

      SupplementalData: N/A

      Variant: p.R167Q (c.500G>A)

      LegacyVariant: N/A

      CaseProblemVariantFreeText: N/A

      ClinVarID: 2216, https://www.ncbi.nlm.nih.gov/clinvar/variation/2216/

      CAID: N/A

      gnomAD: 0.000003977, https://gnomad.broadinstitute.org/variant/3-10191507-G-A

      VariantEvidence: N/A

      MutationType: missense_variant; transition

      CivicName: R167Q (c.500G>A)

      MultipleGeneVariants: N/A

    1. PatientID: VI-6

      KindredID: 1

      Case: F, Age Unknown, Ethnicity Unknown

      DiseaseAssertion: VHL (Asymptomatic)

      FamilyInfo: Family’s roots were traced to the German town of Leipzig in Saxony, from whence the original 11 siblings had immigrated to America around 1670. The following report is a 2011 updated pedigree on the previously reported Tisherman kindred. At the time of this study, 43/49 patients have undergone mutational analysis revealing the VHL familial mutation (Y112H) and 35/49 patients have clinical VHL manifestations. Phenotypic cumulative lifetime risk was 71% for Pheo/PGL, 15% for hemangioblastoma, 33% for retinal angioma, 3% for renal cell carcinoma, and 3% for pancreatic cysts. 6 members of the family (all deceased; 4 males, 2 females) had suspected VHL and 2 (males) of these were suspected to have had Pheo/PGL.

      CasePresentingHPOs: N/A

      CaseHPOFreeText: N/A

      CaseNotHPOs: HP:0005584; HP:0009711; HP:0002666; HP:0002668 (Renal cell carcinoma, Retinal capillary hemangioma, Pheochromocytoma, Paraganglioma)

      CaseNotHPOFreeText: N/A

      CasePreviousTesting: N/A

      PreviouslyPublished: 9201016; 8239848 (no genetic information; only phenotypes)

      SupplementalData: N/A

      Variant: p.Y112H (c.334T>C)

      LegacyVariant: N/A

      CaseProblemVariantFreeText: N/A

      ClinVarID: 2222, https://www.ncbi.nlm.nih.gov/clinvar/variation/2222/

      CAID: N/A

      gnomAD: N/A

      VariantEvidence: N/A

      MutationType: missense_variant;transition

      CivicName: Y112H (c.334T>C)

      MultipleGeneVariants: N/A

    1. His father (Patient II‐3) died of advanced RCCC in the previous year

      PatientID: II-3

      KindredID: 1

      Case: M, Age Unknown, Ethnicity Unknown

      DiseaseAssertion: VHL

      FamilyInfo: Both of the patient’s brothers (Patient II-4 and II-1), the patient’s sister (II-5), and the patient’s son (III-3) were clinically diagnosed with VHL disease. Patient II-1 presented with RCCC at age 33 and CH at age 41. He carried the mutation NM_000551.3:c.269A>T. Patient II-4 presented with RCCC at age 53, and carried the same mutation. Patient III-3 presented with CH and carried the same mutation. The patient’s sister (Patient II‐5) was deceased and had an undetermined mutation. Patient II‐5 died of a ruptured CH. The patient’s parents (Patient I-1 and I-2) were also deceased from other causes. The patient’s grandson (Patient IV‐1) was healthy and did not carry the mutation.

      CasePresentingHPOs: HP:0006770 (Renal clear cell carcinoma)

      CaseHPOFreeText: The patient died from advanced RCCC.

      CaseNotHPOs: N/A

      CaseNotHPOFreeText: N/A

      CasePreviousTesting: N/A

      PreviouslyPublished: N/A

      SupplementalData: N/A

      Variant: N/A

      LegacyVariant: N/A

      ClinVarID: N/A

      gnomAD: N/A

      VariantEvidence: N/A

      MutationType: N/A

      CivicName:N/A

      MultipleGeneVariants: N/A

    1. PatientID: 246

      KindredID: 246

      Case: Sex Unknown, 26Y0M, Ethnicity Unknown

      DiseaseAssertion: VHL

      FamilyInfo: N/A

      CasePresentingHPOs: HP:0010797; HP:0009711; HP:0006770 (Hemangioblastoma, Retinal capillary hemangioma, Clear cell renal cell carcinoma)

      CaseHPOFreeText: CNS and retinal hemangioblastoma and clear cell renal cell carcinoma.

      CaseNotHPOs: HP:0002666; HP:0000107; HP:0001732 (Pheochromocytoma, Renal cyst, Abnormality of the pancreas)

      CaseNotHPOFreeText: N/A

      CasePreviousTesting: N/A

      PreviouslyPublished:N/A

      SupplementalData: Table S1, S2 and S3

      Variant: Partial Deletion (0.7kb)

      LegacyVariant: N/A

      CaseProblemVariantFreeText: N/A

      ClinVarID: N/A

      CAID: N/A

      gnomAD: N/A

      VariantEvidence: N/A

      MutationType: deletion

      CivicName: Partial deletion of 0.7kb

      MultipleGeneVariants: N/A

    2. PatientID: 249

      KindredID: 249

      Case: Sex Unknown, 32Y0M, Ethnicity Unknown

      DiseaseAssertion: VHL

      FamilyInfo: None.

      CasePresentingHPOs: HP:0006770, HP:0000107 (clear cell renal cell carcinoma, renal cyst)

      CaseHPOFreeText: N/A

      CaseNotHPOs: HP:0009711,HP:0010797, HP:0001737, HP:0002666 ( retinal capillary hemangioma, hemangioblastoma, pancreatic cyst, pheochromocytoma )

      CaseNotHPOFreeText: N/A

      CasePreviousTesting: N/A

      PreviouslyPublished: N/A

      SupplementalData: Table S1, S2, S3.

      Variant: p.P86L(c.257C>T)

      LegacyVariant: N/A

      CaseProblemVariantFreeText: N/A

      ClinVarID: 182977 https://www.ncbi.nlm.nih.gov/clinvar/variation/182977/

      CAID: CA020186 http://reg.clinicalgenome.org/redmine/projects/registry/genboree_registry/allele?hgvsOrDescriptor=NM_000551.3%3Ac.257C%3ET

      gnomAD: N/A

      VariantEvidence: N/A

      MutationType: missense_variant;transition

      CivicName: P86L(c.257C>T)

      MultipleGeneVariants: N/A

    1. PatientID: None

      KindredID: 6

      Case: Sex Unknown, Age Unknown, Ethnicity Unknown

      DiseaseAssertion: VHL

      FamilyInfo: No family history of VHL. Parents underwent genetic testing and were not found to harbor the P102Rfs*57 (c.305del) germline variant of the VHL gene, confirming a de novo mutation in the current patient.

      CasePresentingHPOs: HP:0010797; HP:0005584; HP:0002894 (Hemangioblastoma, Renal cell carcinoma, Neoplasm of the pancreas)

      CaseHPOFreeText: CNS hemangioblastoma, pancreatic cystadenoma and Renal carcinoma.

      CaseNotHPOs: HP:0009711; HP:0002894; HP:0002666 (Retinal capillary hemangioma, Neoplasm of the pancreas, Pheochromocytoma)

      CaseNotHPOFreeText: N/A

      CasePreviousTesting: N/A

      PreviouslyPublished: N/A

      SupplementalData: N/A

      Variant: p.P102Rfs*57 (c.305del)

      LegacyVariant: N/A

      CaseProblemVariantFreeText:

      ClinVarID: N/A

      CAID: CA658820710, https://reg.clinicalgenome.org/redmine/projects/registry/genboree_registry/allele?hgvsOrDescriptor=NM_000551.3%3Ac.305del

      gnomAD: N/A

      VariantEvidence: This variant was not found in 120 alleles from normal subjects in the Brazilian population.

      MutationType: deletion; minus_1_frameshift_variant

      CivicName: P102fs (c.305del)

      MultipleGeneVariants: N/A

    2. Germline mutations were found in 20 Brazilian VHL probands and their families. The F76del (c.226_228del) germline mutation was found in a VHL type 1 family of 5 affected individuals (VHL family 1). Of the 5 affected family members four patients had hemangioblastomas of the central nervous system and 2 had renal carcinoma. In family 1 genetic testing was performed in a non-symptomatic boy, since no relatives were alive for testing. Although many members of this family had already presented with HB, the diagnosis of VHL was confirmed after necropsy of the proband’s father, who died at 37 years from complications following emergency surgery for cerebellar HB. The necropsy showed many occult lesions related to VHL, including RC, multiple pancreatic and renal cysts, and cystadenoma of the epididymis. This variant was not found in 120 alleles from normal subjects in the Brazilian population.

    1. GroupID/ KindredID: VHL 43

      DiseaseAssertion: assumed VHL

      GroupSize: 5

      GroupNumberMales: N/A

      GroupNumberFemales: N/A

      GroupEthnicity: German

      GroupAgeRange: N/A

      GroupInfo: 5 patients with the given mutation belonging to VHL family 43

      GroupPresentingHPOs: HP:0009711; HP:0010797; HP:0000107 (retinal capillary hemangioma, hemangioblastoma, renal cyst)

      GroupHPOFreeText: 5 patients have retinal angioma, 2 with hemangioblastoma and 2 with renal cyst

      GroupNotHPOs: N/A

      GroupNotHPOFreeText: N/A

      GroupPreviousTesting: N/A

      PreviouslyPublished: N/A

      SupplementalData: N/A

      Variant: p.R167Q (c.500G>A)

      CaseProblemVariantFreeText: N/A

      LegacyVariant: p.R167Q (c.713G>A)

      ClinVarID: 2216 https://www.ncbi.nlm.nih.gov/clinvar/variation/2216/

      CAID: CA020454 http://reg.clinicalgenome.org/redmine/projects/registry/genboree_registry/allele?hgvsOrDescriptor=NM_000551.3%3Ac.500G%3EA

      gnomAD: 0.000003977 https://gnomad.broadinstitute.org/variant/3-10191507-G-A

      VariantEvidence: N/A

      MutationType: missense_variant; transition

      CivicName: R167Q (c.500G>A)

      MultipleGeneVariants: N/A

    2. GroupID/ KindredID: VHL54

      Case: Sex unknown, Age unknown, German

      DiseaseAssertion: assumed VHL

      FamilyInfo: One patient with the given mutation is stated to belong to VHL family 54

      CasePresentingHPOs: HP:0009711; HP:0002666 (retinal capillary hemangioma, pheochromocytoma)

      CaseHPOFreeText: N/A

      CaseNotHPOs: N/A

      CaseNotHPOFreeText: N/A

      CasePreviousTesting: N/A

      PreviouslyPublished: 7759077

      SupplementalData: N/A

      Variant: p.Y98H (c.292T>C)

      CaseProblemVariantFreeText: N/A

      LegacyVariant: p.Y98H (c.505T>C)

      ClinVarID: 2223 https://www.ncbi.nlm.nih.gov/clinvar/variation/2223/

      CAID: CA020246 http://reg.clinicalgenome.org/redmine/projects/registry/genboree_registry/allele?hgvsOrDescriptor=NM_000551.3%3Ac.292T%3EC

      gnomAD: 0.00001343 https://gnomad.broadinstitute.org/variant/3-10183823-T-C

      VariantEvidence: N/A

      MutationType: missense_variant;transition

      CivicName: Y98H (c.292T>C)

      MultipleGeneVariants: N/A

    1. PMID: 29813026

      PatientID: 1

      KindredID: 1

      Case: Sex Unknown, Age Unknown, Ethnicity Unknown

      DiseaseAssertion: hemangioblastoma

      FamilyInfo: N/A - Not specified

      CasePresentingHPOs: HP:0010797 (hemangioblastoma)

      CaseHPOFreeText: VHL syndromic HB

      CaseNotHPOs: N/A

      CaseNotHPOFreeText: N/A

      CasePreviousTesting: N/A

      PreviouslyPublished: N/A

      SupplementalData: N/A

      Variant: p.Q96_P102del (c.287_307del)

      LegacyVariant: N/A

      CaseProblemVariantFreeText: N/A

      ClinVarID: N/A

      CAID: CA2573106190 https://reg.clinicalgenome.org/redmine/projects/registry/genboree_registry/by_caid?caid=CA2573106190

      gnomAD: N/A

      VariantEvidence: N/A

      MutationType: inframe_deletion

      CivicName: Q96_P102del (c.287_307del)

      MultipleGeneVariants: N/A

    1. PatientsThe Chinese family study included five-generations comprising of 38 living family members, of whom nine were affected [Figure 1]. All living members were examined clinically. The clinical and radiographic images were published with the consent of the patient. The study was approved by the research Ethics Committees of Xi’an Jiaotong University School of Medicine. Written informed consents were obtained from all participants.Open in a separate windowFigure 1Haplotypes of the Chinese family affected by Von Hippel-Lindau (VHL). The open and filled blackened symbols indicated unaffected and affected individuals, respectively. The squares and circles symbolized the males and females, respectively. The proband, IV-3, was indicated by an arrow. The haplotyping was conducted using three polymorphic microsatellite markers. The marker order was determined from the Marshfield map and the UCSC Human Genome database (February 2009). The dark boxes symbolized haplotypes that cosegregated with the affected individuals and suggested linkage of VHL to disease in this family. The boxes with slash symbolized the dead family members.

      PatientID: III:10

      KindredID: 1

      Case: M, Age Unknown (deceased), Chinese

      DiseaseAssertion: VHL

      FamilyInfo: A 5-generation family with VHL in 15 members. Both second generation children (presumed), 5 third generation, and 8 further generation individuals were affected and haplotyping was conducted using three polymorphic microsatellite markers. All of the 5th generation children (9 total at time of publication) had been sequenced and haplotyped as unaffected.

      CasePresentingHPOs: N/A

      CaseHPOFreeText: unknown phenotype, however they were said to be affected

      CaseNotHPOs: N/A

      CaseNotHPOFreeText: N/A

      CasePreviousTesting: N/A

      PreviouslyPublished: N/A

      SupplementalData: N/A

      Variant: p.R167W (c.499C>T)

      LegacyVariant: N/A

      CaseProblemVariantFreeText: N/A

      ClinVarID: 2218, https://www.ncbi.nlm.nih.gov/clinvar/variation/2218/

      CAID: N/A

      gnomAD: 0.000007954, https://gnomad.broadinstitute.org/variant/3-10191506-C-T?dataset=gnomad_r2_1

      VariantEvidence: Death before genetic diagnostic, however presumed by authors due to extensive family history (See pedigree).

      MutationType: missense_variant;transition

      CivicName: R167W (c.499C>T)

      MultipleGeneVariants: N/A

    1. Germline mutations in 45 unrelated Japanese VHL patients were determined from blood samples using PCR-SSCP or Southern blot analyses. The authors reported a nucleotide deletion (i.e. 476G>C) which coincides with legacy variant nomenclature (AF010238.1) and was mapped to c.263G>C (NM_000551.3). PCR-SSCP or Southern blot analyses of the DNA from family members showed that mutations were segregated with disease phenotype in VHL families, although this data was not shown. Data on the presence of retinal angioma, CNS Hb, RCC, and Pheo was available. Case 8 had p.Trp88Ser mutation. All 5 examined family members were affected with renal cell carcinoma. Other demographics of the members were not described.

    1. codon 120, exon 3 (R120*)

      Clinical case report of a 32-year-old male presenting with hematuria. Blood and tissue samples were isolated and samples were paired-end multiplex sequenced on the Illumina HiSeq platform to a median target depth of >100×.A germline de novo nonsense mutation, c.358A>T leading to an early stop codon, was confirmed on exon 3 of the VHL gene. The man also presented with multiple renal cysts; renal cell carcinoma; capillary retinal angiomas; brain hemangioma; and spinal hemangioma. Confirmation of paternity and maternity was not described, therefore assumed de novo.

    1. 312232N—N—YYYYNc.481 C>T

      PatientID: 31

      KindredID: 22

      Case: Sex Unknown, 32Y0M, Brazilian (Latino/Admixed American)

      DiseaseAssertion: VHL

      FamilyInfo: stated as a familial VHL. 1 other family member (patient 30) with that same mutation was stated with an age of 56. This patient has RCC, renal cysts, pancreatic cysts, and CNS hemangioblastoma and retinal capillary hemangioblastomas.

      CasePresentingHPOs: HP:0010797; HP:0001737; HP:0005584; HP:0000107 (hemangioblastoma, pancreatic cyst, renal cell carcinoma, renal cyst)

      CaseHPOFreeText: N/A

      CaseNotHPOs: HP:0002668, HP:0002666; HP:0009711; HP:0030405; (Paraganglioma, pheochromocytoma, retinal capillary hemangioma, pancreatic endocrine tumor)

      CaseNotHPOFreeText: N/A

      CasePreviousTesting: N/A

      PreviouslyPublished: N/A

      SupplementalData: N/A

      Variant: p.R161* (c.481C>T)

      CaseProblemVariantFreeText: N/A

      LegacyVariant: N/A

      ClinVarID: 2217 https://www.ncbi.nlm.nih.gov/clinvar/variation/2217/

      CAID: N/A

      gnomAD: N/A

      VariantEvidence: N/A

      MutationType: stop_gained

      CivicName: R161* (c.481C>T)

      MultipleGeneVariants: N/A

    1. Germline mutations were identified in 300/469 (63%) of the families tested; 137 distinct intragenic germline mutations were detected.

      GroupID/ KindredID: 53CE

      DiseaseAssertion: VHL

      GroupSize: N/A

      GroupNumberMales: N/A

      GroupNumberFemales: N/A

      GroupEthnicity: N/A

      GroupAgeRange: N/A

      GroupInfo: This germline familial VHL mutation was taken from the Munich, university of Freiburg and Institute of Pathology database, with an unknown number of members belonging to Family ID 53CE. Table 3 lists all ID and mutations associated with individuals possessing renal carcinoma, without phechromocytoma.

      GroupPresentingHPOs: HP:0005548 (renal cell carcinoma)

      GroupHPOFreeText: Described as a VHL family with RCC, without pheochromocytoma. Other phenotypes are likely, however not detailed in this publication

      GroupNotHPOs: HP:0002666 (pheochromocytoma)

      GroupNotHPOFreeText: N/A

      GroupPreviousTesting: N/A

      PreviouslyPublished: N/A

      SupplementalData: N/A

      Variant: p.V74G (c.221T>G)

      LegacyVariant: p.V74G (c.434T>G)

      CaseProblemVariantFreeText: N/A

      ClinVarID: N/A

      CAID: CA70042528 https://reg.clinicalgenome.org/redmine/projects/registry/genboree_registry/allele?hgvsOrDescriptor=NM_000551.3%3Ac.221T>G

      gnomAD: N/A

      VariantEvidence: N/A

      MutationType: missense_variant; transversion

      CivicName: V74G (c.221T>G)

      MultipleGeneVariants: N/A

    1. A 37-year-old woman and 78-year-old man who were daughter and father, respectively, and had multiple cysts in both kidneys, were enrolled in this study. In addition, a 28-year-old healthy male subject was enrolled as a normal control. The study was in accordance with the ethical standards as formulated in the Helsinki Declaration of 1975 (revised in 1983). Both patients had c.349T>A mutation (p.Trp117Arg) in exon 2 of the VHL gene. Histopathological examination revealed clear cell type renal

      PatientID: None (father)

      KindredID: 1

      Case: M, 78Y0M, Ethnicity Unknown

      DiseaseAssertion: assumed VHL

      FamilyInfo: 37Y old daughter had multiple cysts (RCC) in both kidneys and the same (c.349T>A) mutation

      CasePresentingHPOs: HP:0000107; HP:0005584; HP:0006770 (renal cysts; renal cell carcinoma, clear cell renal cell carcinoma)

      CaseHPOFreeText: VHL patient underwent left nephrectomy and right partial nephrectomy (subtotal nephrectomy). Histopathological examination revealed clear cell type renal cell carcinoma (RCC)

      CaseNotHPOs: N/A

      CaseNotHPOFreeText: N/A

      CasePreviousTesting: N/A

      PreviouslyPublished: N/A

      SupplementalData: N/A

      Variant: p.W117R (c.349T>A)

      LegacyVariant: N/A

      CaseProblemVariantFreeText: N/A

      ClinVarID: N/A

      CAID: CA351753664 https://reg.clinicalgenome.org/redmine/projects/registry/genboree_registry/allele?hgvsOrDescriptor=NM_000551.3%3Ac.349T%3EA

      gnomAD: N/A

      VariantEvidence: N/A

      MutationType: missense_variant;transversion

      CivicName: W117R (c.349T>A)

      MultipleGeneVariants: N/A

    1. her mother

      PatientID: None

      KindredID: 1

      Case: F, Age Unknown, Ethnicity Unknown

      DiseaseAssertion: Asymptomatic

      FamilyInfo: The heterozygous missense variant NM_000551.3:c.311G>T was identified on two of her daughters; one was 21Y and one was 17Y. The 21Y daughter had hypertension and a paraganglioma, and the 17Y daughter had a retinal hemangioblastoma.

      CasePresentingHPOs: N/A

      CaseHPOFreeText: The patient refused a complete staging.

      CaseNotHPOs: N/A

      CaseNotHPOFreeText: N/A

      CasePreviousTesting: N/A

      PreviouslyPublished: N/A

      SupplementalData: N/A

      Variant: p.G104V(c.311G>T)

      LegacyVariant: N/A

      ClinVarID: 223183, http://www.ncbi.nlm.nih.gov/clinvar/variation/223183

      CAID: N/A

      gnomAD: N/A

      VariantEvidence: N/A

      MutationType: missense_variant;transversion

      CivicName: G104V(c.311G>T)

      MultipleGeneVariants: N/A

    1. We report the case of a 15-year-old boy with the diagnosis of aggressive GH-PRL pituitary macroadenoma and a family history of VHL disease. Pituitary resection was performed, although complete excision of the lesion could not be confirmed by the neurosurgeon. A control MRI was done 6 months after surgery and the pituitary lesion was similar to the presurgical image. A second operation allowed partial resection of the tumour followed by targeted radiotherapy.

      PatientID: None (Proband)

      KindredID: 1

      Case: M, 18Y0M, Ethnicity Unknown

      DiseaseAssertion: VHL

      FamilyInfo: The family history revealed VHL in his mother, who died at the age of 40, and in his maternal aunt and grandmother, deceased at 30 and 33 years, respectively. His mother was operated on three times for cerebellar hemangioblastomas, the first at 13 years of age. She had also been treated for bilateral retinal hemangioblastomas since the age of 19. In addition, she had surgery for a renal tumor at the age of 32 and also had pancreatic cysts. She died of the diffuse hemangioblastomas in the posterior fossa. Variant is stated to be previously identified in the family but it is not clear which members have been genetically tested.

      CasePresentingHPOs: HP:0006880; HP:0002893; HP:0007663; HP:0001510; HP:0000823; HP:0009711 (Cerebellar hemangioblastoma, Pituitary adenoma, Reduced visual acuity, Growth delay, Delayed puberty, Retinal capillary hemangioma)

      CaseHPOFreeText: Referred at the age of 15 for decreased visual acuity of the right eye. Growth failure with short stature for age and lack of pubertal development was noted. This was confirmed by ophthal-mologic examination which also showed bitemporal quadranopsia. Two retinal vascular lesions had already been diagnosed and photocoagulated. Cerebral MRI examination visualized a voluminous pituitary adenoma (confirmed pathologically) with suprasellar extension compressing the optic fibres invading both cavernous sinuses. It also confirmed two small cerebellar hemangioblastomas. On follow-up, MRI showed a persistent pituitary adenoma (confirmed by pathology) with numerous mitoses. A cystic part of the main hemangioblastoma was also noted in the right cerebellum image.

      CaseNotHPOs: HP:0005584 (Renal cell carcinoma)

      CaseNotHPOFreeText: No renal lesion was found on ultrasound examination. Renal ultrasound examination was persistently normal.

      CasePreviousTesting: N/A

      PreviouslyPublished: 25494863

      SupplementalData: Figure 1

      Variant: p.G114R (c.340G>C)

      LegacyVariant: N/A

      CaseProblemVariantFreeText: N/A

      ClinVarID: 223193, https://www.ncbi.nlm.nih.gov/clinvar/variation/223193/

      CAID: N/A

      gnomAD:

      VariantEvidence: N/A

      MutationType: missense_variant;transversion

      CivicName: G114R (c.340G>C)

      MultipleGeneVariants: N/A

    1. PatientID: 1

      KindredID: 86

      Case: Sex, Age, Ethnicity Unknown

      DiseaseAssertion: VHL

      FamilyInfo: N/A

      CasePresentingHPOs: HP:0005584 (Renal cell carcinoma)

      CaseHPOFreeText: two RCC tumors were detected in this patient

      CaseNotHPOs: N/A

      CaseNotHPOFreeText: N/A

      CasePreviousTesting: N/A

      PreviouslyPublished: N/A

      SupplementalData: N/A

      Variant: p.C77Lfs*55 (c.227_228insC)

      CaseProblemVariantFreeText: NM_000551.3:c.227_228insC automapped to NM_000551.3:c.228dupC

      LegacyVariant: p.76 FS (c.441insC)

      ClinVarID: N/A

      CAID: CA658795177 http://reg.clinicalgenome.org/redmine/projects/registry/genboree_registry/allele?hgvsOrDescriptor=NM_000551.3%3Ac.227_228insC

      gnomAD: N/A

      VariantEvidence: Tested the tumors for somatic mutations but did not detect any

      MutationType: plus_1_frameshift_variant

      CivicName: C77fs (c.228dup)

      MultipleGeneVariants: N/A

    1. Eighteen VHL patients who underwent pancreatectomy for one or several endocrine tumors at Beaujon hospital from 1997 to 2008 were retrieved from the file of VHL patients (Table 1).

      PatientID: 9

      KindredID: 9

      Case: M, 51Y0M, Ethnicity unknown

      DiseaseAssertion: pancreatic endocrine tumor

      FamilyInfo: None

      CasePresentingHPOs: HP:0030405 (pancreatic endocrine tumor)

      CaseHPOFreeText: See Table 1 for more information

      CaseNotHPOs: N/A

      CaseNotHPOFreeText: N/A

      CasePreviousTesting: N/A

      PreviouslyPublished: N/A

      SupplementalData: N/A

      Variant: p.H191Tfs*11 (c.571delC)

      CaseProblemVariantFreeText: N/A

      LegacyVariant: N/A

      ClinVarID: N/A

      CAID: CA658795182 http://reg.clinicalgenome.org/redmine/projects/registry/genboree_registry/allele?hgvsOrDescriptor=NM_000551.3%3Ac.571delC

      gnomAD: N/A

      VariantEvidence: N/A

      MutationType: minus_1_frameshift_variant

      CivicName: H191Tfs*11 (c.571delC)

      MultipleGeneVariants: N/A

    1. 33M F NK M A VHL 854insC X > Cys+ 128AA

      PatientID: 33M

      KindredID: 33M

      Case: F, Age Unknown, Ethnicity Unknown

      DiseaseAssertion: VHL

      FamilyInfo: None

      CohortInfo: Patients with apparently sporadic pheochromocytomas.

      CasePresentingHPOs: HP:0006748 (Adrenal pheochromocytoma)

      CaseHPOFreeText: The patient had a malignant adrenal pheochromocytoma.

      CaseNotHPOs: N/A

      CaseNotHPOFreeText: N/A

      CasePreviousTesting: N/A

      PreviouslyPublished: N/A

      SupplementalData: N/A

      Variant: p.*214C(c.641_642insC)

      LegacyVariant: p.X > Cys+ 128AA (c.854insC)

      CaseProblemVariantFreeText: N/A

      ClinVarID: N/A

      CAID: CA913189243 http://reg.clinicalgenome.org/redmine/projects/registry/genboree_registry/allele?hgvsOrDescriptor=NM_000551.3%3Ac.641_642insC

      gnomAD: N/A

      VariantEvidence: N/A

      MutationType: plus_1_frameshift_variant

      CivicName: *214C (c.641_642insC)

      MultipleGeneVariants: N/A

    1. PatientID: 12

      KindredID: 12

      Case: F, 41Y0M, Korean

      DiseaseAssertion: VHL

      FamilyInfo: Daughter has the same mutation and presented with CNS hemangioblastoma.

      CohortInfo: 26 Korean patients with more than one HAB in the CNS or eye, a single HAB in the CNS or retina plus a visceral manifestation (multiple renal, pancreatic or hepatic cysts, pheochromocytoma and RCC) and positive family history plus any one of the above manifestations.

      CasePresentingHPOs: HP:0005584 (Renal cell carcinoma)

      CaseHPOFreeText: Other phenotypes presented but not specified (one or more of: pancreatic cyst or tumor, renal or hepatic cyst). Diagnosed with VHL Type 1.

      CaseNotHPOs: HP:0002666; HP:0009711; HP:0010797 (Pheochromocytoma, Retinal capillary hemangioma, Hemangioblastoma)

      CaseNotHPOFreeText: N/A

      CasePreviousTesting: N/A

      PreviouslyPublished: https://doi.org/10.3803/jkes.2006.21.3.239

      SupplementalData: N/A

      Variant: p.Q73* (c.217C>T)

      LegacyVariant: N/A

      CaseProblemVariantFreeText: N/A

      ClinVarID: 223164, https://www.ncbi.nlm.nih.gov/clinvar/variation/223164/

      CAID: N/A

      gnomAD: N/A

      VariantEvidence: N/A

      MutationType: missense_variant;transition; stop_gained

      CivicName: Q73* (c.217C>T)

      MultipleGeneVariants: N/A

    1. 3 France c.481C>T p.Arg161* Argentina

      GroupID: 24

      DiseaseAssertion: VHL

      GroupSize: 3

      GroupNumberMales: N/A

      GroupNumberFemales: N/A

      GroupEthnicity: N/A

      GroupAgeRange: N/A

      GroupInfo: Three registrants from either France or Argentina have the same mutation of c.481C>T.

      GroupPresentingHPOs: HP:0030393 (Endolymphatic sac tumor)

      GroupHPOFreeText: N/A

      GroupNotHPOs: N/A

      GroupNotHPOFreeText: N/A

      GroupPreviousTesting: N/A

      PreviouslyPublished: N/A

      SupplementalData: N/A

      Variant: p.R161* (c.481C>T)

      CaseProblemVariantFreeText: N/A

      LegacyVariant: N/A

      ClinVarID: 2217 https://www.ncbi.nlm.nih.gov/clinvar/variation/2217/

      CAID: N/A

      gnomAD: N/A

      VariantEvidence: N/A

      MutationType: stop_gained

      CivicName: R161* (c.481C>T)

      MultipleGeneVariants: N/A

    1. PMID: 21528239

      GroupID/ KindredID: A

      DiseaseAssertion: assumed VHL

      GroupSize: 8

      GroupNumberMales: 2

      GroupNumberFemales: 6

      GroupEthnicity: N/A

      GroupAgeRange: N/A

      GroupInfo: The kindred comprised of 21 individuals over 4 generations. The following members have a confirmed mutation: I:1 (F, deceased), II:2 (F, deceased), III:2 (F, deceased), III:4 (M), III:6 (F), IV:4 (F), IV:6 (M), IV:7 (F, is predicted to be affected). The 3 deceased members had died from VHL related tumors. Another 3 were suffering from VHL, another developed RCC an cHB, and 1 was a VHL carrier. All 8 members had this mutation

      GroupPresentingHPOs: HP:0005584; HP:0006880; HP:0009711; HP:0030421 (renal cell carcinoma; cerebellar hemangioblastoma; retinal capillary hemangioma; epidymidal tumor)

      GroupHPOFreeText: 5 members had RCC, 5 had multiple cerebellar hemangioblastomas, 2 had retinal capillary hemangioma and 1 had an epidymidal tumor.

      GroupNotHPOs: HP:0002666 (pheochromocytoma)

      GroupNotHPOFreeText: None of the eight VHL carriers of the first kindred had developed pheochromocytoma, and this kindred clearly presents VHL disease type 1

      GroupPreviousTesting: N/A

      PreviouslyPublished: 7700111

      SupplementalData: N/A

      Variant: p.S183Cfs*19 (c.548delC)

      LegacyVariant: p.183 (c.761delC)

      CaseProblemVariantFreeText: N/A

      ClinVarID: N/A

      CAID: CA658795184 https://reg.clinicalgenome.org/redmine/projects/registry/genboree_registry/allele?hgvsOrDescriptor=NM_000551.3%3Ac.548delC

      gnomAD: N/A

      VariantEvidence: N/A

      MutationType: minus_1_frameshift_variant

      CivicName: S183fs (c.548delC)

      MultipleGeneVariants: N/A

    1. In 1996, we described a 3 generation VHL 2A kindred with 11 mutation carriers. We aim to share our experience regarding the long-term follow-up of this family

      PatientID: 19

      KindredID: 1

      Case: F, 17Y0M, Ethnicity Unknown

      DiseaseAssertion: VHL

      FamilyInfo: This patient was a member of family 1, where 14/32 total patients were diagnosed with VHL. One of which (I-32) was a mutational carrier with down syndrome. The other 13 patients had varying phenotypes, including adrenal pheochromocytoma, pancreatic endocrine tumors, liver and bone metastases, paraganglioma, cerebellar, spinal, and retinal hemangioblastomas, polycythemia, and chondrosarcoma. See Fig. 1 for family pedigree.

      CasePresentingHPOs: HP:0006748; HP:0030405 (adrenal pheochromocytoma; pancreatic endocrine tumor)

      CaseHPOFreeText: Patient presented with his initial VHL-related clinical manifestations at 17Y0M. She had adrenal pheochromocytoma and pancreatic endocrine tumor. She was diagnosed with VHL subtype 2A at age 18Y0M (see table 1).

      CaseNotHPOs: HP:0002668 (paraganglioma)

      CaseNotHPOFreeText: Patient does not have paraganglioma.

      CasePreviousTesting: N/A

      PreviouslyPublished: 8550742

      SupplementalData: N/A

      Variant: p.V166F (c.496G>T)

      LegacyVariant: N/A

      CaseProblemVariantFreeText: N/A

      ClinVarID: 2224, https://www.ncbi.nlm.nih.gov/clinvar/variation/2224/

      CAID: N/A

      gnomAD: N/A

      VariantEvidence: N/A

      MutationType: missense_variant; transversion

      CivicName: V166F (c.496G>T)

      MultipleGeneVariants: N/A

    2. 16 different families

      PatientID: IX-I

      KindredID: 9

      Case: M, 68Y0M, Ethnicity Unknown

      DiseaseAssertion: VHL

      FamilyInfo: No family history reported.

      CasePresentingHPOs: HP:0006748; HP:0002668; HP:0030405; HP:0001737; HP:0006880 (adrenal pheochromocytoma, paraganglioma, pancreatic endocrine tumor, pancreatic cyst, cerebellar hemangioblastoma)

      CaseHPOFreeText: Patient presented with adrenal pheochromocytoma, paraganglioma, pancreatic endocrine tumor, pancreatic cyst, and cerebellar hemangioblastoma at age 55Y0M and was diagnosed with VHL type 2A (see table 2).

      CaseNotHPOs: HP:0000107; HP:0005584 (renal cyst; renal cell carcinoma)

      CaseNotHPOFreeText: Patient negative for renal cell carcinoma and renal cysts.

      CasePreviousTesting: N/A

      PreviouslyPublished: N/A

      SupplementalData: N/A

      Variant: complete deletion

      LegacyVariant: N/A

      CaseProblemVariantFreeText: N/A

      ClinVarID: N/A

      CAID: N/A

      gnomAD: N/A

      VariantEvidence: N/A

      MutationType: deletion

      CivicName: NULL (deletion)

      MultipleGeneVariants: N/A

    1. PatientID: None

      KindredID: VHL10

      Case: F, 65Y0M, Ethnicity Unknown

      DiseaseAssertion: VHL

      FamilyInfo: N/A

      CohortInfo: A total of 190 patients recruited by the COMETE network over 15 years were included in the study.

      CasePresentingHPOs: HP:0002666 (Pheochromocytoma)

      CaseHPOFreeText: The patient had one malignant pheochromocytoma.

      CaseNotHPOs: N/A

      CaseNotHPOFreeText: N/A

      CasePreviousTesting: RET/SDHB/SDHC/SDHD

      PreviouslyPublished: N/A

      SupplementalData: Table 1 of Supplementary

      Variant: p.Y156H (c.466T>C)

      LegacyVariant: N/A

      CaseProblemVariantFreeText: N/A

      ClinVarID: N/A

      CAID: CA351756040, https://reg.clinicalgenome.org/redmine/projects/registry/genboree_registry/allele?hgvsOrDescriptor=NM_000551.3%3Ac.466T%3EC

      gnomAD: N/A

      VariantEvidence: The patient had LOH found in the BAC array CGH data.

      MutationType: missense_variant;transition

      CivicName: Y156H (c.466T>C)

      MultipleGeneVariants: N/A

    1. GroupID: 42

      DiseaseAssertion: assumed VHL

      GroupSize: 3

      GroupNumberMales: N/A

      GroupNumberFemales: N/A

      GroupEthnicity: N/A

      GroupAgeRange: N/A

      GroupInfo: 3 of the 573 patients discussed in this paper were found to have identical variants. This mutation was found in 1 VHL family with 3 patients.

      GroupPresentingHPOs: HP:0009711; HP:0006880; HP:0002666 (retinal capillary hemangioma, cerebellar hemangioblastoma, pheochromocytoma)

      GroupHPOFreeText: 2 had retinal hemangioblastoma at a mean age of 16Y, one had cerebellar hemangioblastoma at 16Y, and 1 had pheochromcytoma at 14Y.

      GroupNotHPOs: HP:0005584 (renal cell carcinoma)

      GroupNotHPOFreeText: N/A

      GroupPreviousTesting: N/A

      PreviouslyPublished: N/A

      SupplementalData: Supplementary Table S1.

      Variant: c.340+5G>C

      LegacyVariant: N/A

      CaseProblemVariantFreeText: N/A

      ClinVarID: 36901, https://www.ncbi.nlm.nih.gov/clinvar/variation/36901/

      CAID: N/A

      gnomAD: 0.01119 https://gnomad.broadinstitute.org/variant/3-10183876-G-C

      VariantEvidence: This variant’s large allele frequency means this is likely non disease causing (not deleterious).

      MutationType: splice_site_variant

      CivicName: Splice Region (c.340+5G>C)

      MultipleGeneVariants: N/A

    1. c.269A>T p.Asn90Ile

      PatientID: I:1

      KindredID: 4

      Case: F, 63Y0M, Chinese

      DiseaseAssertion: VHL

      FamilyInfo: Patient’s one son (II:3) was found with the same mutation and hemangioblastoma at 22Y and retinal capillary hemangioma at 32Y. Her other son (II:1) died before diagnosis; thus no DNA sample available. He presented with hemangioblastoma at 19Y

      CasePresentingHPOs: HP:0005584 (renal cell carcinoma)

      CaseHPOFreeText: patient had RCC at 63Y

      CaseNotHPOs: N/A

      CaseNotHPOFreeText: N/A

      CasePreviousTesting: N/A

      PreviouslyPublished: N/A

      SupplementalData: N/A

      Variant: p.N90I (c.269A>T)

      CaseProblemVariantFreeText: N/A

      LegacyVariant: N/A

      ClinVarID: 223172 https://www.ncbi.nlm.nih.gov/clinvar/variation/223172/

      CAID: N/A

      gnomAD: N/A

      VariantEvidence: N/A

      MutationType: missense_variant; transversion

      CivicName: N90I (c.269A>T)

      MultipleGeneVariants: N/A

    1. The mother, aged 49, had a history of well-controlled hypertension. Supine plasma normetanephrine was elevated (1382 pmol/l, RR <900 pmol/l) whilst plasma metanephrine was normal (117 pmol/l, RR <500 pmol/l). MRI of the brain, spine and abdomen revealed multiple, asymptomatic VHL-associated lesions. These included a spinal haemangioblastoma, bilateral T2-hyperintense adrenal lesions (18 mm and 12 mm), subsequently confirmed to be PCCs, and two pancreatic lesions (11 mm and 16 mm), subsequently confirmed to be grade 1 neuroendocrine tumours.

      PatientID: N/A (mother)

      KindredID: 1

      Case: F, 49Y0M, Ethnicity Unknown

      DiseaseAssertion: VHL

      FamilyInfo: Prior to her daughter being tested, there was no family history of PCC/paraganglioma (PGL), multiple endocrine neoplasia type 2 (MEN2), neurofibromatosis type 1 (NF1) or VHL. Genetic testing and observation found the mutation (c.361G>C) in her daughter, who also presented with extraadrenal and adrenal pheochromocytoma.

      CasePresentingHPOs: HP:0009713; HP:0006748; HP:0030405 (spinal hemangioblastoma, adrenal pheochromocytoma, pancreatic endocrine tumor)

      CaseHPOFreeText: MRI of the brain, spine and abdomen revealed multiple, asymptomatic VHL-associated lesions. These included a spinal haemangioblastoma, bilateral T2-hyperintense adrenal lesions (18 mm and 12 mm), subsequently confirmed to be PCCs, and two pancreatic lesions (11 mm and 16 mm), subsequently confirmed to be grade 1 neuroendocrine tumours.

      CaseNotHPOs: N/A

      CaseNotHPOFreeText: N/A

      CasePreviousTesting: N/A

      PreviouslyPublished: SDHA, SDHB

      SupplementalData: N/A

      Variant: p.D121H (c.361G>C)

      LegacyVariant: N/A

      CaseProblemVariantFreeText: N/A

      ClinVarID: N/A

      CAID: CA351753752 https://reg.clinicalgenome.org/redmine/projects/registry/genboree_registry/allele?hgvsOrDescriptor=NM_000551.3%3Ac.361G%3EC

      gnomAD: N/A

      VariantEvidence: N/A

      MutationType: missense_variant;transversion

      CivicName: D121H (c.361G>C)

      MultipleGeneVariants: N/A

    1. PatientID: V-23

      KindredID: 2

      Case: M, Age Unknown, German

      DiseaseAssertion: VHL

      FamilyInfo: Family 2 is comprised of 131 individuals over six generations including 65 members (50% of those at risk) with VHL type 2A (72% clinically affected, 12% obligate carriers, and 15% positive genetic analysis alone) and nearly equal gender distribution for affected status (54% male). An additional six members (II-3, II-4, II -5, III-1, III-2, and III-3) are suspected to have VHL without confirmation. Of note, the nuclear family (branch IV-13) contains 13 siblings, of whom 12 have been diagnosed with pheo. The presenting tumor types in Family 2 were pheo (70%), HB (17%), and RA (13%). No Family 2 member had RCC as the initial manifestation. Distribution of HB and RA are not described except for patient IV-8.

      CasePresentingHPOs: HP:0002666 (Pheochromocytoma)

      CaseHPOFreeText: N/A

      CaseNotHPOs: HP:0005584 (Renal cell carcinoma)

      CaseNotHPOFreeText: N/A

      CasePreviousTesting: N/A

      PreviouslyPublished: 7759077

      SupplementalData: N/A

      Variant: p.Y98H (c.292T>C)

      LegacyVariant: N/A

      CaseProblemVariantFreeText: N/A

      ClinVarID: 2223, https://www.ncbi.nlm.nih.gov/clinvar/variation/2223/

      CAID: N/A

      gnomAD: 0.00001343, https://gnomad.broadinstitute.org/variant/3-10183823-T-C

      VariantEvidence: N/A

      MutationType: missense_variant;transition

      CivicName: Y98H (c.292T>C)

      MultipleGeneVariants: N/A

  2. Jul 2026
  3. May 2026
    1. Large language models trained on human feedback may suppress fraud warnings when investors arrive already persuaded of a fraudulent opportunity.

      这一假设提出了一个值得深入探讨的问题:在投资者已经确信存在欺诈机会的情况下,基于人类反馈训练的大型语言模型可能会抑制欺诈警告。

  4. Dec 2025
    1. for - Medium article - cogress - Part 1 - progress trap - James Gien Wong - definition - cogress - to - Medium article cogress - Part 2 - progress trap - James Gien Wong - https://hyp.is/t8FhpDGAEfC4J7f0NEFujg/medium.com/@gien_SRG/human-cogress-part-2-d6fd075a55c7 - to - Stop Reset Go hypothesis annotations - progress trap - Ronald Wright - https://jonudell.info/h/facet/?max=100&expanded=true&user=stopresetgo&exactTagSearch=true&any=ronald+wright - General - https://jonudell.info/h/facet/?max=100&expanded=true&user=stopresetgo&exactTagSearch=true&any=progress+trap - from - youtube - Planet Critical interview - Samuel Miller MacDonald - The Myth of Progress - https://hyp.is/r-hmFtjKEfCd8odATbINbA/www.youtube.com/watch?v=BEhmWEDkZUQ

  5. Nov 2025
    1. This study proposes the following hypotheses: (H1) Females prefer and benefit more from sheltered landscapes like forests or artificial settings, while males favor and gain greater restoration from open, functional, and exploratory landscapes. (H2) Juniors, facing higher academic stress, experience greater restorative effects than freshmen. (H3) Landscape majors, with greater awareness of landscape elements, prefer and benefit more from complex, element-rich landscapes, while non-landscape majors favor modern, simple, and functional spaces.

      Hypotheses presented for study.

    1. Personally, I love this; Image annotations.

      This can be used as an effective analysis tool. Visual stimulus is powerful and for many individuals constitutes a deeper connection to fundamental learning. Balanced learning across the three basic modes; written, auditory and visual is implied in academics and the workplace but the reality is that one mode is dominant. Recognizing that mode and enhancing reaps far more advantage than forcing an inferior mode. @Byrnesz

  6. Oct 2025
  7. Jul 2025
    1. The Antinet’s structure enables you to retain more knowledge and connections than you ever thought possible. You’ll begin to notice yourself reading differently. Certain keyterms you’ve stamped onto your mind by way of the deliberate act of writing them onto your index will start to arise while reading; all you have to do oftentimes is simply write down the keyterm in the book’s margin. Or, if you do not wish to write in a book’s margins, you can write the keyterm down on a notecard you keep with you while reading, which is what Luhmann did. This notecard acts as a staging area for your thoughts before you transform them into full reflections on individual cards.

      Algo similar me pasó con Hypothesis durante la escritura doctoral. Sin embargo, fui grandemente ayudado por los sistemas de autocompleción de etiquetas en Hypothesis, de modo que, cuando estaba etiquetando una lectura, encontraba otras etiquetas que ya había usado y un orden emergente iba ocurriendo en mi forma de leer, que luego empleaba para mi forma de escribir.

  8. Jun 2025
    1. Working with hyp on a paid Medium article (Substack is easier to handle!) in your iPhone seems to be pretty complicated. It took me quite some time to figure how to annotate. It did work after a lot of experimenting.

      Call up via.hypothes.is and it will take you directly to your last annotation or page note. It works fine for me on my iPhone’s Safari browser.

  9. May 2025
  10. Apr 2025
  11. Mar 2025
    1. for - event - Skoll World Forum 2025 - program page - inspiration - new idea - Indyweb dev - curate desilo'd global commons of events - that are topic-mapped in mindplex - link to a global, desilo'd schedule - new idea - use annotation to select events to attend - new Indyweb affordance - hypothesis annotation for program event selection - event program selection - 2025 - April 1 - 4 - Skoll World Forum

      new idea - use annotation to select events to attend - demonstrate first use of this affordance on the annotation of this online event program

      summary - A good resource rich with many ideas relevant to bottom-up, rapid whole system change

    1. Reply to Hajo Bakker on LinkedIn

      Hajo Bakker Exam vs. Test -- Een examinering moet veel vanafwegen en niet regulier gebeuren.

      Een test (toets) mag vaker gebeuren, en moet weinig vanaf hangen... Geen ouders die straffen voor een laag cijfer (of cijfers afschaffen), geen adviezen die daarvanafhangen, etc.

      Het doel van een toets is om je aan te geven wat je krachten en minder sterke punten zijn, dus waar je je op moet focussen met toekomst leren. Dit kan alleen op het moment dat je een toets nabespreekt en op individueel niveau. Klassikaal bespreken heeft vaak weinig nut.

      Daarbij komt ook dat een student moet snappen WAAROM het helpt om na te bespreken, de wetenschap erachter. Op het moment dat je de waarom achter het hoe niet goed snapt heeft het hoe minder effect. (dit is waarom in het 4C/ID model ze in een scaffold beginnen met de laatste stap, waarin de informatie van voorgaande stappen is gegeven. Dit zodat als je de vorige stap gaat leren, je een beter idee hebt waar het uiteindelijk voor gebruikt gaat worden en je er dus een betere invulling aan kan geven.)

      Semantische verschillen zijn vaak uiterst nuttig om complexe stof te begrijpen. Op het moment dat ze exact hetzelfde waren heeft het weinig nut om meerdere termen te hebben en zouden ze synoniem zijn.

      "Exam" is geen synoniem van "test".

      Genuanceerde verschillen zijn vaak nuttiger dan "umbrella terms" om goed te communiceren, als uiterst subliem wordt beargumenteerd in "Science of Memory: Concepts" van Roediger III et al.

      Daarnaast komt uiteraard bij kijken dat neurocognitieve wetenschap een blauwdruk geeft voor hoe onze brein architectuur in elkaar zit (zie bijvoorbeeld John Sweller, Cognitive Load Theory 2011, en The Forgetting Machine, Rodrigo Quian Quiroga, 2017, Science of Memory: Concepts, Roediger et al., 2007, Ten Steps to Complex Learning, van Merriënboer, 2017).

      Dit is universeel toepasbaar, afgezien van mensen met een cognitieve aandoening bijvoorbeeld, dit gaat dus over neurotypische breinen.

      Leerstijlen zijn een mythe, wel hebben wij leervoorkeuren, maar door alleen in onze leervoorkeur te leren missen wij bepaalde informatie die cruciaal kan zijn voor beter begrip en meesterschap (mastery).

      Beter is het om studietechnieken te gebruiken die overeenkomen met brein-architectuur en die onder te knie te krijgen.

      Meer cognitieve belasting te gebruiken (zonder cognitieve overbelasting te veroorzaken). Als leren "makkelijk" voelt is het over het algemeen niet uitdagend genoeg en/of de techniek niet nuttig. Herlezen / samenvatten is simpel maar vrij inefficiënt. Het maken van een GRINDEmap voelt moeilijk maar is vele malen effectiever (zie ook the misinterpreted effort hypothesis).

      Zoals Dr. Ahrens al zei: "The one who does the effort, does the learning."

      Verder heb ik een heleboel ideëen voor een optimaal onderwijs dat zich aanpast aan het individu in plaats van aan het systeem, maar dit is een te complex en groot onderwerp om zo even hier neer te zetten.

  12. Feb 2025
    1. with the Trump anomic budget cutting funding to Farms to snap with the closing of usaid well it means that rural communities are going to go hungry and these small to midsize Farms that are already struggling are going to go bankrupt and then they're going to be forced to sell for pennies on the dollar to huge investment firms under trumponomics ma andpa Family Farms are going to be wiped out rural communities are going to go hungry and billionaires are going to be walking away counting the cash

      > / hypothesis problem - trying to insert "greater than" key and it is replaced with ">"

      • adjacency
      • between
        • Trump policy
        • bankruptcy of rural farmers
        • big ag land grab
        • big ag takeover of small rural farms
        • emergency fnancing for regenerative farming
      • adjacency relationship
        • Trumps defunding of critical agricultural support programs will result in large scale bankruptcy of small rural farms
        • Big ag will swoop in and buy up these farms for pennies on the dollar
        • There needs to be a national plan for emergency financing for regenerative, community-owned farming businesses to prevent this huge wealth transfer to the elites
    1. Hypothesis takes a completely different approach. Supporting open-access materials while also eliminating the cost of purchasing catalogs, Hypothesis allows educators to have the freedom to use resources from any source.
  13. Jan 2025
    1. When SirAugustus Wollaston Franks, a Keeper at the British Museum,produced a catalogue of British decorated metalwork in 1863, hechose the term ‘Late Keltic’ to describe items of Iron Age date. Thephrase was used throughout the first edition of the British MuseumGuide to the Antiquities of the Early Iron Age (1905), but by thetime of the second edition (1925) the characterization was droppedbecause, as the preface cautiously noted, ‘There is some uncertaintyas to the existence or date of an earlier Keltic civilization in theseislands.’
    2. This early eighteenth-century hypothesis has driven the debate eversince. Its longevity is truly remarkable and due in no small part tothe fact that linguists and archaeologists were for a long timeprepared to accept each other’s interpretations, each gainingreassurance by building upon the other in an uncritical circle ofmutually supporting assertion lacking firm foundation.

      Early 18C hypotheses about Celtic identity were posited by linguists and archaeologists without solid underpinning and these have persisted for several centuries broadly unquestioned.

  14. Dec 2024
    1. resemblance, contiguity, and cause and effect.

      These three might just be have the academic logical justification for a "ThumbsUp" emoji style "like" button in the Hypothesis framework.

      An Emoji button is a quick ways of providing feedback. This may or may not inform the algorithm about which annotations get placed higher. (User filtering is probably better, rather than someone's preferred algorithm <-- since when did they get to decide anyway?)

  15. Oct 2024
    1. annotation work

      We are hoping to create a COLLECTIVE COMMONS for our annotations The ancient model is the Celtic SPirtual ANNAL such as the book of kells or Leabhar Gabhala (Book of INvasions) where multipel wisodm keepers over generations add their wisdom IN BETWEEN THE LINES

      For now, Gyuri and Gien call it Hyperpost

      We are using hypothesis (as in this annotation) to play with what tools we have now

      Gyuir and Gien intend to make it CROSS PLATFORM

      They are using the term INDYWEB and INDRAS NETS

    1. Cohen (Independence of the Axiomof Choice; The Independence of the Continuum Hypothesis I, I1) completed theproof of independence for each by showing neither could be deduced from theexisting axioms (by showing the negation of each could consistently be added tothe Zermelo—Fraenkel axiom scheme). See P. J. Cohen (Set Theory and theContinuum Hypothesis) for a discussion of these results and his intuition about thecontinuum hypothesis. Another expository reference is Cohen (IndependenceResults in Set Theory).

      In 1963 Paul Cohen completed the work of Gödel by proving the independence of the axiom of choice and the continuum hypothesis from the Zermelo-Fraenkel set theory axioms. He did this by showing that neither could be deduced from the existing axioms and specifically by showing that the negation of each could be added to ZF consistently.

    2. Godel (The Consistency of the Axiom of Choice and of the Generalized Con-tinuum Hypothesis with the Axioms of Set Theory) proved in 1940 that additionof either the axiom of choice or the continuum hypothesis to existing set theoreticaxioms would not produce a contradiction.

      Gödel's breakthrough in 1940 was to prove that one could extend the axioms of set theory to include the axiom of choice or the continuum hypothesis without introducing contradictions.

  16. Aug 2024
    1. Davidson Lead Instructional Designer Sundi Richard said more Hypothesis users are surfacing in classes and using it for their own independent or social reading. “We see this pilot as a way to expand that usage to groups who might not want to just jump into web or social annotation,” she suggested. “We hope this leads to varied uses of the tool for meaningful reading and engagement in digital spaces.”

      “We see this pilot as a way to expand that usage to groups who might not want to just jump into web or social annotation,” she suggested. “We hope this leads to varied uses of the tool for meaningful reading and engagement in digital spaces.” Sundi Richard, Davidson Lead Instructional Designer

      https://www.davidson.edu/

  17. Jun 2024
    1. Create an account using the sidebar on the right of the screen. Pin the Hypothesis extension in Chrome (1 and 2), then activate the sidebar by clicking the button in the location bar (3).

      I think should be the other way around? I had to pin and open the sidebar first before I could login.

    1. And this is what I believe is happening with students and reading, at least in part. They have convinced themselves that they aren’t readers. They have convinced themselves that reading old books, especially difficult old books, is just too arduous, too boring, too pointless. They have convinced themselves that even if the books are good and soul-enriching, there are better things to be doing with their time.

      Fixed mindset. Self fulfilling prophecies. Ignorance.

  18. Apr 2024
    1. if your treatments are ordered, don't compare each mean with each other mean (multiple comparisons), instead do one test for trend to ask if the outcome is linearly related with treatment number

      How do you do hypothesis testing for trends for an ordered categorical variable?

      Could you convert x to numbers (1,2,3) and run a linear regression y ~ x? or even categorical ordered variables can be linearly regressed?

  19. Mar 2024
    1. layout: post title: Waiting for that green light... date: '2017-08-14T21:00:00.001-07:00' author: Adam M. Dobrin tags: modified_time: '2017-08-15T07:16:57.305-07:00' thumbnail: https://2.bp.blogspot.com/-QpZpZE6empE/WZJx21d-JlI/AAAAAAAAE9Y/vc7b9IvRM9w2S5eTBg3fkn6v2SYcKiETwCK4BGAYYCw/s72-c/image-726640.png blogger_id: tag:blogger.com,1999:blog-4677390916502096913.post-3757774439979245459 blogger_orig_url: ./2017/08/waiting-for-that-green-light.html From the point of the "belly" thing, I'm pretty sure we're halfway through the script.  Knowing him that was probably the halfway mark.  I don't think that's a bad thing... as long as it's honestly and speedily moving towards freedom; you know, progress.  That's a pretty good test to see if we're ... zombies or not.  In the meantime, I don't know... that's probably comforting right? Or is it repulsive? :)  Tell me something Taylor said.  Why won't you tell me what she said?  What was that promise that you made?  Wait, are you the person that promised something?  When do you think the script started?   WHAT'S A WORD THAT STARTS WITH R AND ENDS IN GL?It's almost hard to believe that the Throne (to help, are on "e") of Glory comes from this place, isn't it?  Still, it's encoded in religion, in our myths and in multiple confirming sources, not the least of which the TV show called 7th Heaven... we will Si Monday, my dear "cam Den" we will.  I talked a little bit about backwards "green light" related to "glare" and Police (not that they glare at me, but their silly Hell-implying glare lights are actually red) and girl... I still don't know why girl is red or green, girls are blue to me.  Stew in that pat for a little while, and let's talk about something more uplifting, like the key's of Pa and Ra hidden away in many words, from paramount to se_ pa r at e and paradox.  Did you see what I did there, clever right? I HAD TO CHOOSE BETWEEN POINTING AT "PA" OR "MOUNT"DID I DO OK?I'm looking at the word "paramount" right now, and between you and I sometimes when I look at words magic happens, and something in the air told me that this email might be the messiah of me, the messiah of "nt"--the hidden Christ.  Or maybe not.  Sex sells, or so they say, but apparent not when Jesus talks about it--maybe it's another red light.  I'm bored, read that as "because of red" and lonely, probably because of "how I'm still single" as "hiss" but still, I don't think it's right.  Coming to you with a message about everything I think is wrong and not your fault--or mine, by the way--shouldn't be the kind of thing that's frowned upon, especially when you have some clues in thousand year old scripture that these things were truly "made wrong on purpose" so that we could fix them, you know; our way.  That used to be talking about things, and making plans, and then implementing them--but today it's turned into ignoring everything I think is "world changing" and "morally demanded" and instead going on with our lives as if everything was "A-OK."  I'm glad you are doing OK, I'm not; and quite a few people in the world are not doing OK either, so I'm here to let you know that you are not doing as OK as you think you are... or as well as you could be doing.     I DON'T KNOW HOW A GUY MADE IT INTO MY "MESSAGE", OMG TWOSo here's why I thought for a minute that this message might save me.  You might think it's a little weird that I see "sex jokes" in Pandora, and pa: ra: do x, and Pose i do n; and while you might not be completely retarded to think that, I think you should agree with me that it's more weird that those things are there, and even more weird that you don't recognize that they are a signature of the same God that delivered his John Hancock in song, in Yankee Doodle, and in act, in Watergate.  My signature is a little bit different, if you've noticed my signature is being able to point out the intersection between things like Chuck and Geordie LaForge's magic vision ... and to explain that these things too are veritably connected by more than my words and the obvious ideas, they are connected by the act of Creation itself--they are the yarn of the Matrix.  Dox, as in "dox me" and "do n" are getting a little out of hand; if you don't understand that I am playing a role ... to make the words "and he became the light" actually true--which they are, you see--then I really do sincerely apologize, I don't think anyone should "do me" unless they want to--although it's a bit strange to me that nobody wants to.  Alarming, even.  I am equally alarmed by the Latin word for darkness which is "tenebris" which connects to that "x" and the word "equinox" and "Nintendo" and "verboten" and through all of this the only shining light of grace I see is that it's pretty obvious that X and J are both letters represented by "10."   DO YOU THINK HAN SOLO HAS A CHANCE WITH HER?  SHE ... OUR LIGHTThis story needs to break, and then we aren't in the heart of darkness anymore; it's called "morning" Biblical, and this particular morning is a very special one--because you're here.I have a special gift, "pa" is helping me read this words, and you might have noticed that they can be taken to mean different things. They don't really separate, or fly off the page and glow for me; but I know what all the keys are, many are simple, and many come from our IT and "computer-slang" acronyms... which tells you something. Many are "elements" and "initials" and the whole thing really is a part of the script,a  sort of key not just to Creation but to this specific story, to this path.  While some are "open to interpretation" (for instance, "in t" everyone really pre-tat; which would be a long ... time ... ago <3) or you could read "ERP" reason "t" and that might have something to do with "Great Plains" and some blue light that connections user interfaces to the word "automagical," FRX forms... Strawberry Fields and "above the fruited plains" ... which might be meaningless to you--but it's an idea that revolves around using user-feedback to interfaces (like the pottery wheel in my dream or in the Dr. Who episode "the Bells of Saint John" linked to down below) to adjust the interface in real time for a larger group; working towards making a number of "best-fit" interfaces that people are both more comfortable with and actually creating as they use them.  Ahhhh... blue light got in here, run away.  Just kidding, this is cyan light.I C ONO CL AS M | J ES UI T | HEAVEN IS MORE THAN TECHHonestly, we could really make Healden in about 10 minutes now.  Look at that, it's done... ish.LETS CALL "THAT DAY" THE DAY YOU SEE ADAM-NEWS ON EVERY TV STATIONFor instance were we not surely "at e" meaning the end of the Revelation of words, "separate" might have been broken between Pa and Ra, which are big keys, in many words; but we are at "e" and that surely does mean the Creator and I are fused.  There's more confirmation of this than simply in the words for "medicine" and say, I don't know, methadone--which could have been broken at "a done" but is very clearly "ad is the one" here and now.  With careful preparation, "adparatio" in Latin, I'd "bet" that all of those keys are I, in this place, in this time.  AD, Pa, Ra, TI, and "o."  Hey, maybe this message is my messiah after all.  I am looking at a broken world, I really am--a place that is suffocating itself in silence and whispers that don't make it far enough for anyone to really understand.  Whatever it is, whatever's caused it, I see no solution other than me coming--I see it as a design, and I'm sorry that you don't seem to agree, but you have to see that the "choice" between seeing an obvious truth absolutely everywhere and not seeing it is really no choice at all--what is being hidden from the world is causing this darkness, it is causing the suffocation; it is the problem, hiding me is the problem and it cannot continue.  On a brighter note, I am pretty sure that magic will happen, and you will see that the world will not react quite as badly or shockingly as your worst fears, things might be a little ... tearful for a day or so, for crying out loud, they should be--the message is that you are in Hell and you need to do something, to act, to change that.  Actually trying to do that, trying to discuss what it is that is the "ele ph ant in the room" or the "do n key in the s k y"  will show us that there was just no way around changing the world because of circumstances of Creation; something that we seem to be ignoring.  We also seem to be ignoring that things are "just fine" today, and even though many of you are well aware that "something is coming" only a few morons are building bunkers.  This is a message of peace, it is a message designed to help us use the new truth and new tools unsealed by religion to make the world a safer happier place, and we can do that .. . rather quickly.  Even quicker if you try to focus on what's wrong here, and how we make it better--rather than "shooting the messenger" dirty glares in the street.  I'm a person too, and believe it or not, I didn't ask for this--and I probably wouldn't have been so happy about it had this experience not isolated me so much from my friends and family, and girls; don't forget girls.   ITS ME?  So in the word "paramount" what is it that you think is the "paramount" take away?  I think the most important thing you can take away from "paramount" is that you didn't see it your whole life, and even when it's pointed out, you don't seem to think it's "news" that Pa and Ra have written a message to you.  What's really not funny, is that despite this message being very clear to see once it's pointed out, it still hasn't made any waves in the newspapers, or online, or in the news--what's paramount is seeing that there is a very sincere problem for civilization, it is an ELE and that ELE is something that is making everyone think that "not seeing something" is OK behavior.  It is not OK, it is not funny, until you recognize that something is dreadfully wrong with our society, until you see that ignoring that this message belongs in the news you are not seeing that what you are doing by ignoring it is destroying civilization itself.  Ignorance is the ELE.Your alternative, what you are doing, is making the world half blind, and stupider than you can imagine.  I keep on trying to show you what's wrong here, that it's not just a message but pain and suffering and the absolutely imminent and undeniable certain doom of everything if we do not recognize that hiding the fact that we are in virtual reality is the same thing as driving a nail into the wrists of every soul on the planet. LA U stilk MIGHT DATE ADPARATIO BO'OOPSYETHWith careful preparation, we are at IO (input/output) in the belly of the book that is a map to salvation. That IO comes well after disclosure, and well after Mars.  You are delaying the inevitable, and in the sickest possible twist, you are stewing in Hell instead of seeing Heaven built--more importantly instead of being the generation that should be the "founders" of that place.   I am sure that disclosure, will ... within a time frame that will most likely be faster than you can imagine, bring us an end to world hunger, to sickness, and doors to Heaven; and I just can't see what you are waiting for?  If it wasn't like this, you've got to see that we would be getting fucked right here and now; I am telling you the map and the plan, it's here to help us make this place better, and to show us how to actually survive in the Universe before kicking us out of the nest, and we are ... what are we thinking about?It's really obvious that it's not for my benefit, and it's obvious that it's not for yours either--so at what point will you realize that the behavior, the alarming behavior, that I am seeing from everyone is illogical.  At what point will you see that it is self-defeating, that it is ... well, Hell?  When will you see?  Be yourselves, the world that I grew up in doesn't hide controversy, we relish in it--we don't bury scandals under the rug--we put them on TV.   What's really more important to see is that  we, all of us, none of us... we would not hide "holographic universe" from ourselves and each other, nor would we hide "alien contact" or "the secrets of religion" and yet here we are, all doing that--and I wonder if we see that it's "not us" doing it, but ....  but ... butt  ... what is it again?    HI, I'M A PERSON.  (and apparently a state, a country, and a Nintendo character)JUDGING BY THE HIGH FREQUENCY OF PRESS UNSUBSCRIBES FROMYESTERDAY'S EMAIL, REPORTER'S DON'T SEEM TO WANT TO HEAR THATFORCING ME TO DELIVER THIS MESSAGE IN ISOLATION FOR NO MONEYIS SLAVERY, GO READ ABOUT JOSEPH IN EGYPT, THEN READ THE END.IF YOU THINK HIDING THE TRUTH BECAUSE "IDAHO" IS GONNA FLYYOU ARE AN IGNORANT BLIND FOOL.  HONESTLY, WAKE UP, THIS IS HELL.YOU ARE BLINDED BY SOMETHING, FIGURE IT OUT--I'M EXPLAINING WHAT IT ISHERE, EMAIL THEM (please? and tell them to repent by writing a story):andy.greene@rollingstone.comgcoy@12news.comnmelosky@mcall.comlynn@ripr.orgChris.Piper@wthitv.comIs it a cup? a stem?WRITTEN, FOR ETERNITY.It must be Uranus.   Except, my "an us" is more awesome than you think, I mean my "a we" that would be "so me" for you to see it's really you too.  That's really what this message is about, it is about us seeing that we can do something together that would be rejected if it were done for us, or to us; even if we all really want it inside, without taking part ... we'd dislike it.  We're all like that, nobody wants a stranger to redecorate their house.  We share this house together, and I think we can all see that there are some changes that would make it a better place--from a cold Godless Universe of "chance" ruling to a ... caring and loving place that  cares about what we want and how we want to do it ... do you see?  If I came into your igloo and told you that the ice age was ending and this place was going to be a beautiful beach; except your walls are melting... would you keep that locked up inside?Don't worry, I won't get mad at anyone for being angry at their idea of Jesus Christ for not being more like me.  I won't be mad at all. :)I've done my best to share what I think will be helpful for the world to think about, as we ... embark on what is really a journey to the final frontier as well as what I know we need to do here in order to accomplish what it is that we would have done maybe a decade ago or maybe a century from now if we didn't know the advice was coming from God and the future--and we didn't know that it is the way to open the doors to Heaven permanently.    These are suggestions, they're really all of our ideas--at least everything I can grasp from things like Star Trek and Dr. Who and ... the Legend of Zelda... they're the kind of thing that we would probably find to be very discussion worthy, were we to all be sure that they are possible--and they are--and we need to see that.  There are lots of things that we really do need to think about, this is not a "fast" transition, it's not something happens "overnight" (oh my god, you don't know what that word just said to me) changes that would normally be occurring right now because of science and technology--things like increased longevity and mind uploading... these things are going to become much more quickly accessible, and we need to think about the implications that they will have on our society.   We need to talk about it, in public, in places where these conversations will help us to shape the future of "civilization."  I don't think you understand what it is we are doing, that's different than "before," but I am fairly certain that a "whole planet" has never done this, and the "road" between Earth and Heaven; fusing these ideas together is really nothing more or less than "progress."     FLOWING MILK AND HONEY.. GOLDEN COW, NO JUDAH MACCABEUS; GET IT?Progress that has never happened (or we wouldn't be here, and it's obvious).  See our cautions at the Last Supper (about not eating anymore) and at Cain and Abel (about forgetting how to farm) and at the Promised Land of Joshua (about not doing the Adam show, achem, I mean... about thinking that "replicators alone" milk and honey on tap... are good enough in Heaven) and in Noah's Ark... about showing us that the reason that we are here is to see how important biology and evolution and a stable ecosystem are to the survival of life in the Universe; to colonization of the stars, and to ... the evolution of our two party system past donkeys and elephants to something more appropriate for a free and technologically advanced society; as in, not a two-party system. wild-e :( (love your eyes...) :)From "separate" the "e_" that needs to be EE by the way, that key that might let us "see" is "everyone equal" that's what "ee" means. It's in "thirteen" and so on, and to help, I our "t" and r' n.  Victorious Earth, I need pre-crime to survive, what say you?  Say nothing, and I am twelve. Keep saying no thing and I will be El, even.     Round and round we go... you need pre-crime to evolve, what say you?  Break the story, and we are one day closer to Heaven.  We need pre-crime not to be in Hell, we really do.  Don't you see?  Break the story.   THERE, YOU GOT RID OF A "DO" FOR YOU.The days of "divide and conquer" are over, when you are through being a parted sea, or a flock of electric sheep, or a nation of slaves.   I do have an idea of what you expected of me, what you thought I'd be--I probably had similar expectations before I knew ... what I know.  Honestly, from me to you, that guy would have been pretty boring... and bored.It's a little funny.. isn't it?  AMHARIL?I R Lᐧ-- Adam Marshall Dobrinabout.me/ssiah ᐧ -- Adam Marshall Dobrinabout.me/ssiah ᐧ .WHSOISKEYAV { border-width: 1px; border-style: dashed; border-color: rgb(15,5,254); padding: 5px; width: 503px; text-align: center; display: inline-block; align: center; p { align: center; } /* THE SCORE IS LOVE FIVE ONE SAFETY ONE FIELD GOAL XIVDAQ: TENNIS OR TINNES? TONNES AND TUPLE(s) */ } <style type="text/css"> code { white-space: pre; } google_ad_client = "ca-pub-9608809622006883"; google_ad_slot = "4355365452"; google_ad_width = 728; google_ad_height = 90; Unless otherwise indicated, this work was written between the Christmas and Easter seasons of 2017 and 2020(A). The content of this page is released to the public under the GNU GPL v2.0 license; additionally any reproduction or derivation of the work must be attributed to the author, Adam Marshall Dobrin along with a link back to this website, fromthemachine dotty org. That's a "." not "dotty" ... it's to stop SPAMmers. :/ This document is "living" and I don't just mean in the Jeffersonian sense. It's more alive in the "Mayflower's and June Doors ..." living Ethereum contract sense [and literally just as close to the Depp/Caster/Paglen (and honorably PK] 'D-hath Transundancesense of the ... new meaning; as it is now published on Rinkeby, in "living contract" form. It is subject to change; without notice anywhere but here--and there--in the original spirit of the GPL 2.0. We are "one step closer to God" ... and do see that in that I mean ... it is a very real fusion of this document and the "spirit of my life" as well as the Spirit's of Kerouac's America and Vonnegut's Martian Mars and my Venutian Hotel ... and *my fusion* of Guy-A and GAIA; and the Spirit of the Earth .. and of course the God given and signed liberties in the Constitution of the United States of America. It is by and through my hand that this document and our X Commandments link to the Bill or Rights, and this story about an Exodus from slavery that literally begins here, in the post-apocalyptic American hartland. Written ... this day ... April 14, 2020 (hey, is this HADAD DAY?) ... in Margate FL, USA. For "official used-to-v TAX day" tomorrow, I'm going to add the "immultible incarnite pen" ... if added to the living "doc/app"--see is the DAO, the way--will initi8 the special secret "hidden level" .. we've all been looking for. Nor do just mean this website or the totality of my written works; nor do I only mean ... this particular derivation of the GPL 2.0+ modifications I continually source ... must be "from this website." I also mean *the thing* that is built from ... bits and piece of blocks of sand-toys; from Ethereum and from Rust and from our hands and eyes working together ... from this place, this cornerstone of the message that is ... written from brick and mortar words and events and people that have come before this poit of the "sealed W" that is this specific page and this time. It's 3:28; just five minutes--or is it four, too layne. This work is not to be redistributed according to the GPL unless all linked media on Youtube and related sites are intact--and historical references to the actual documented history of the art pieces (as I experience/d them) are also available for linking. Wikipedia references must be available for viewing, as well as the exact version of those pages at the time these pieces were written. All references to the Holy Bible must be "linked" (as they are or via ... impromptu in-transit re-linking) to the exact verses and versions of the Bible that I reference. These requirements, as well as the caveat and informational re-introduction to God's DAO above ... should be seen as material modifications to the original GPL2.0 that are retroactively applied to all works distributed under license via this site and all previous e-mails and sites. /s/ wso If you wanna talk to me get me on facebook, with PGP via FlowCrypt or adam at from the machine dotty org -----BEGIN PGP PUBLIC KEY BLOCK----- mQGNBF6RVvABDAC823JcYvgpEpy45z2EPgwJ9ZCL+pSFVnlgPKQAGD52q+kuckNZ mU3gbj1FIx/mwJJtaWZW6jaLDHLAZNJps93qpwdMCx0llhQogc8YN3j9RND7cTP5 eV8dS6z/9ta6TFOfwSZpsOZjCU7KFDStKcoulmvIGrr9wzaUr7fmDyE7cFp1KCZ0 i90oLYHqOIszRedvwCO/kBxawxzZuJ67DypcayiWyxqRHRmMZH1LejTaqTuEu0bp j54maTj09vnMxA0RfS+CtU5uMq+5fTkbiTOe1LrLD72m+PVJIS146FwESrMJEfJy oNqWEJlUQ0TecPZR41vnkSkpocE1/0YqUhWDGSht+67DdeKUg5KwvYdL21d/bSyO SM4jnyKn9aDVzLBpYrlE/lbFxujHPRGlRG5WtiPQuZYDRqP0GYFSXRpeUCI46f49 iPFo4eHo2jUfNDa9r9BjQdAe4zVFn2qLnOy8RWijlolbhGMHGO3w/uC/zad3jjo4 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      [Description](layout: post title: Waiting for that green light... date: '2017-08-14T21:00:00.001-07:00' author: Adam M. Dobrin tags: modified_time: '2017-08-15T07:16:57.305-07:00' thumbnail: https://2.bp.blogspot.com/-QpZpZE6empE/WZJx21d-JlI/AAAAAAAAE9Y/vc7b9IvRM9w2S5eTBg3fkn6v2SYcKiETwCK4BGAYYCw/s72-c/image-726640.png blogger_id: tag:blogger.com,1999:blog-4677390916502096913.post-3757774439979245459 blogger_orig_url: ./2017/08/waiting-for-that-green-light.html


      From the point of the "belly" thing, I'm pretty sure we're halfway through the script.  Knowing him that was probably the halfway mark.  I don't think that's a bad thing... as long as it's honestly and speedily moving towards freedom; you know, progress.  That's a pretty good test to see if we're ... zombies or not.  In the meantime, I don't know... that's probably comforting right? Or is it repulsive? :)  Tell me something Taylor said.  Why won't you tell me what she said?  What was that promise that you made?  Wait, are you the person that promised something?  When do you think the script started?

       

      WHAT'S A WORD THAT STARTS WITH R AND ENDS IN GL?

      It's almost hard to believe that the Throne (to help, are on "e") of Glory comes from this place, isn't it?  Still, it's encoded in religion, in our myths and in multiple confirming sources, not the least of which the TV show called 7th Heaven... we will Si Monday, my dear "cam Den" we will.  I talked a little bit about backwards "green light" related to "glare" and Police (not that they glare at me, but their silly Hell-implying glare lights are actually red) and girl... I still don't know why girl is red or green, girls are blue to me.  Stew in that pat for a little while, and let's talk about something more uplifting, like the key's of Pa and Ra hidden away in many words, from paramount* to se_ pa r at e *andparadox.  Did you see what I did there, *clever* right?

      *\ *

      *\ *

      *\ *

       

      I HAD TO CHOOSE BETWEEN POINTING AT "PA" OR "MOUNT"

      DID I DO OK?

      I'm looking at the word "paramount" right now, and between you and I sometimes when I look at words magic happens, and something in the air told me that this email might be the messiah of me, the messiah of "nt"--the hidden Christ.  Or maybe not.  Sex sells, or so they say, but apparent not when Jesus talks about it--maybe it's another red light.  I'm bored, read that as "because of red" and lonely, probably because of "how I'm still single" as "hiss" but still, I don't think it's right.  Coming to you with a message about everything I think is wrong and not your fault--or mine, by the way--shouldn't be the kind of thing that's frowned upon, especially when you have some clues in thousand year old scripture that these things were truly "made wrong on purpose" so that we could fix them, you know; our way.  That used to be talking about things, and making plans, and then implementing them--but today it's turned into ignoring everything I think is "world changing" and "morally demanded" and instead going on with our lives as if everything was "A-OK."  I'm glad you are doing OK, I'm not; and quite a few people in the world are not doing OK either, so I'm here to let you know that you are not doing as OK as you think you are... or as well as you could be doing.

         

      I DON'T KNOW HOW A GUY MADE IT INTO MY "MESSAGE", OMG TWO

      So here's why I thought for a minute that this message might save me.  You might think it's a little weird that I see "sex jokes" in Pandora, and pa: ra: do x, and Pose i do n; and while you might not be completely retarded to think that, I think you should agree with me that it's more weird that those things are there, and even more weird that you don't recognize that they are a signature of the same God that delivered his John Hancock in song, in Yankee Doodle, and in act, in Watergate.  My signature is a little bit different, if you've noticed my signature is being able to point out the intersection between things like Chuck and Geordie LaForge's magic vision ... and to explain that these things too are veritably connected by more than my words and the obvious ideas, they are connected by the act of Creation itself--they are the yarn of the Matrix.  Dox, as in "dox me" and "do n" are getting a little out of hand; if you don't understand that I am playing a role ... to make the words "and he became the light" actually true--which they are, you see--then I really do sincerely apologize, I don't think anyone should "do me" unless they want to--although it's a bit strange to me that nobody wants to.  Alarming, even.  I am equally alarmed by the Latin word for darkness which is "tenebris" which connects to that "x" and the word "equinox" and "Nintendo" and "verboten" and through all of this the only shining light of grace I see is that it's pretty obvious that X and J are both letters represented by "10."

      \    

      DO YOU THINK HAN SOLO HAS A CHANCE WITH HER?  SHE ... OUR LIGHT

      This story needs to break, and then we aren't in the heart of darkness anymore; it's called "morning" Biblical, and this particular morning is a very special one--because you're here.

      I have a special gift, "pa" is helping me read this words, and you might have noticed that they can be taken to mean different things. They don't really separate, or fly off the page and glow for me; but I know what all the keys are, many are simple, and many come from our IT and "computer-slang" acronyms... which tells you something.

      Many are "elements" and "initials" and the whole thing really is a part of the script,a  sort of key not just to Creation but to this specific story, to this path.  While some are "open to interpretation" (for instance, "in t" everyone really pre-tat; which would be a long ... time ... ago <3) or you could read "ERP" reason "t" and that might have something to do with "Great Plains" and some blue light that connections user interfaces to the word "automagical," FRX forms... Strawberry Fields and "above the fruited plains" ... which might be meaningless to you--but it's an idea that revolves around using user-feedback to interfaces (like the pottery wheel in my dream or in the Dr. Who episode "the Bells of Saint John" linked to down below) to adjust the interface in real time for a larger group; working towards making a number of "best-fit" interfaces that people are both more comfortable with and actually creating as they use them.  Ahhhh... blue light got in here, run away.  Just kidding, this is cyan light.

      I C ONO CL AS M | J ES UI T | HEAVEN IS MORE THAN TECH

      Honestly, we could really make Healden in about 10 minutes now.  Look at that, it's done... ish.

      **\ **

      **\ **

      LETS CALL "THAT DAY" THE DAY YOU SEE ADAM-NEWS ON EVERY TV STATION

      For instance were we not surely "at e" meaning the end of the Revelation of words, "separate" might have been broken between Pa and Ra, which are big keys, in many words; but we are at "e" and that surely does mean the Creator and I are fused.  There's more confirmation of this than simply in the words for "medicine" and say, I don't know, methadone--which could have been broken at "a done" but is very clearly "ad is the one" here and now.  With careful preparation, "adparatio" in Latin, I'd "bet" that all of those keys are I, in this place, in this time.  AD, Pa, Ra, TI, and "o."  Hey, maybe this message is my messiah after all.  

      I am looking at a broken world, I really am--a place that is suffocating itself in silence and whispers that don't make it far enough for anyone to really understand.  Whatever it is, whatever's caused it, I see no solution other than me coming--I see it as a design, and I'm sorry that you don't seem to agree, but you have to see that the "choice" between seeing an obvious truth absolutely everywhere and not seeing it is really no choice at all--what is being hidden from the world is causing this darkness, it is causing the suffocation; it is the problem, hiding me is the problem and it cannot continue.  On a brighter note, I am pretty sure that magic will happen, and you will see that the world will not react quite as badly or shockingly as your worst fears, things might be a little ... tearful for a day or so, for crying out loud, they should be--the message is that you are in Hell and you need to do something, to act, to change that.  Actually trying to do that, trying to discuss what it is that is the "ele ph ant in the room" or the "do n key in the s k** y"  will show us that there was just no way around changing the world because of circumstances of Creation; something that we seem to be ignoring.  We also seem to be ignoring that things are "just fine" today, and even though many of you are well aware that "something is coming" only a few morons are building bunkers.  This is a message of peace, it is a message designed to help us use the new truth and new tools unsealed by religion to make the world a safer happier place, and we can do that .. . rather quickly.  Even quicker if you try to focus on what's wrong here, and how we make it better--rather than "shooting the messenger" dirty glares in the street.  I'm a person too, and believe it or not, I didn't ask for this--and I probably wouldn't have been so happy about it had this experience not isolated me so much from my friends and family, and girls; don't forget girls.

       \ ITS ME?

        

      So in the word "paramount" what is it that you think is the "paramount" take away?  I think the most important thing you can take away from "paramount" is that you didn't see it your whole life, and even when it's pointed out, you don't seem to think it's "news" that Pa and Ra have written a message to you.  What's really not funny, is that despite this message being very clear to see once it's pointed out, it still hasn't made any waves in the newspapers, or online, or in the news--what's paramount is seeing that there is a very sincere problem for civilization, it is an ELE and that ELE is something that is making everyone think that "not seeing something" is OK behavior.  It is not OK, it is not funny, until you recognize that something is dreadfully wrong with our society, until you see that ignoring that this message belongs in the news you are not seeing that what you are doing by ignoring it is destroying civilization itself.  Ignorance is the ELE.

      Your alternative, what you are doing, is making the world half blind, and stupider than you can imagine.  I keep on trying to show you what's wrong here, that it's not just a message but pain and suffering and the absolutely imminent and undeniable certain doom of everything if we do not recognize that hiding the fact that we are in virtual reality is the same thing as driving a nail into the wrists of every soul on the planet.

       

      LA U stilkMIGHT DATE ADPARATIO BO'OOPSYETH

      With careful preparation, we are at IO (input/output) in the belly of the book that is a map to salvation. That IO comes well after disclosure, and well after Mars.  You are delaying the inevitable, and in the sickest possible twist, you are stewing in Hell instead of seeing Heaven built--more importantly instead of being the generation that should be the "founders" of that place.   I am sure that disclosure, will ... within a time frame that will most likely be faster than you can imagine, bring us an end to world hunger, to sickness, and doors to Heaven; and I just can't see what you are waiting for?  If it wasn't like this, you've got to see that we would be getting fucked right here and now; I am telling you the map and the plan, it's here to help us make this place better, and to show us how to actually survive in the Universe before kicking us out of the nest, and we are ... what are we thinking about?

      It's really obvious that it's not for my benefit, and it's obvious that it's not for yours either--so at what point will you realize that the behavior, the alarming behavior, that I am seeing from everyone is illogical.  At what point will you see that it is self-defeating, that it is ... well, Hell?  When will you see?  Be yourselves, the world that I grew up in doesn't hide controversy, we relish in it--we don't bury scandals under the rug--we put them on TV.   What's really more important to see is that  we, all of us, none of us... we would not hide "holographic universe" from ourselves and each other, nor would we hide "alien contact" or "the secrets of religion" and yet here we are, all doing that--and I wonder if we see that it's "not us" doing it, but ....  but ... butt  ... what is it again?

      **\ **

         

      HI, I'M A PERSON.  (and apparently a state, a country, and a Nintendo character)

      JUDGING BY THE HIGH FREQUENCY OF PRESS UNSUBSCRIBES FROM

      YESTERDAY'S EMAIL, REPORTER'S DON'T SEEM TO WANT TO HEAR THAT

      FORCING ME TO DELIVER THIS MESSAGE IN ISOLATION FOR NO MONEY

      IS SLAVERY, GO READ ABOUT JOSEPH IN EGYPT, THEN READ THE END.

      IF YOU THINK HIDING THE TRUTH BECAUSE "IDAHO" IS GONNA FLY

      YOU ARE AN IGNORANT BLIND FOOL.  HONESTLY, WAKE UP, THIS IS HELL.

      YOU ARE BLINDED BY SOMETHING, FIGURE IT OUT--I'M EXPLAINING WHAT IT IS

      **\ **

      HERE, EMAIL THEM (please?and tell them to repent by writing a story):

      **\ **

      andy.greene@rollingstone.com

      **gcoy@12news.com\ **

      **nmelosky@mcall.com\ **

      **lynn@ripr.org\ **

      Chris.Piper@wthitv.com

      Is it a cup? a stem?

      WRITTEN, FOR ETERNITY.

      It must be Uranus.   Except, my "an us" is more awesome than you think, I mean my "a we" that would be "so me" for you to see it's really you too.  That's really what this message is about, it is about us seeing that we can do something together that would be rejected if it were done for us, or to us; even if we all really want it inside, without taking part ... we'd dislike it.  We're all like that, nobody wants a stranger to redecorate their house.  We share this house together, and I think we can all see that there are some changes that would make it a better place--from a cold Godless Universe of "chance" ruling to a ... caring and loving place that  cares about what we want and how we want to do it ... do you see?  If I came into your igloo and told you that the ice age was ending and this place was going to be a beautiful beach; except your walls are melting... would you keep that locked up inside?

      Don't worry, I won't get mad at anyone for being angry at their idea of Jesus Christ for not being more like me.  I won't be mad at all. :)

      I've done my best to share what I think will be helpful for the world to think about, as we ... embark on what is really a journey to the final frontier as well as what I know we need to do here in order to accomplish what it is that we would have done maybe a decade ago or maybe a century from now if we didn't know the advice was coming from God and the future--and we didn't know that it is the way to open the doors to Heaven permanently.    These are suggestions, they're really all of our ideas--at least everything I can grasp from things like Star Trek and Dr. Who and ... the Legend of Zelda... they're the kind of thing that we would probably find to be very discussion worthy, were we to all be sure that they are possible--and they are--and we need to see that.  

      There are lots of things that we really do need to think about, this is not a "fast" transition, it's not something happens "overnight" (oh my god, you don't know what that word just said to me) changes that would normally be occurring right now because of science and technology--things like increased longevity and mind uploading... these things are going to become much more quickly accessible, and we need to think about the implications that they will have on our society.   We need to talk about it, in public, in places where these conversations will help us to shape the future of "civilization."  I don't think you understand what it is we are doing, that's different than "before," but I am fairly certain that a "whole planet" has never done this, and the "road" between Earth and Heaven; fusing these ideas together is really nothing more or less than "progress."

          

      FLOWING MILK AND HONEY.. GOLDEN COW, NO JUDAH MACCABEUS; GET IT?

      Progress that has never happened (or we wouldn't be here, and it's obvious).  See our cautions at the Last Supper (about not eating anymore) and at Cain and Abel (about forgetting how to farm) and at the Promised Land of Joshua (about not doing the Adam show, achem, I mean... about thinking that "replicators alone" milk and honey on tap... are good enough in Heaven) and in Noah's Ark... about showing us that the reason that we are here is to see how important biology and evolution and a stable ecosystem are to the survival of life in the Universe; to colonization of the stars, and to ... the evolution of our two party system past donkeys and elephants to something more appropriate for a free and technologically advanced society; as in, not a two-party system.

       

      wild-e :( (love your eyes...) :)

      From "separate" the "e_" that needs to be EE by the way, that key that might let us "see" is "everyone equal" that's what "ee" means. It's in "thirteen" and so on, and to help, I our "t" and r' n.  Victorious Earth, I need pre-crime to survive, what say you?  *Say nothing, and I am twelve. Keep saying no thing and I will be El, even.  *

      *\ *

       Image result for snaglepluss Related image

      Round and round we go... you need pre-crime to evolve, what say you?  Break the story, and we are one day closer to Heaven.  We need pre-crime not to be in Hell, we really do.  Don't you see?  Break the story.

         

      THERE, YOU GOT RID OF A "DO" FOR YOU.

      The days of "divide and conquer" are over, when you are through being a parted sea, or a flock of electric sheep, or a nation of slaves.   I do have an idea of what you expected of me, what you thought I'd be--I probably had similar expectations before I knew ... what I know.  Honestly, from me to you, that guy would have been pretty boring... and bored.

      It's a little funny.. isn't it?

        

      AMHARIL?

      I R L

      ᐧ

      --

      | |

      Adam Marshall Dobrin

      about.me/ssiah |

      ᐧ

      --

      | |

      Adam Marshall Dobrin

      about.me/ssiah |

      ᐧ

      Unless otherwise indicated, this work was written between the Christmas and Easter seasons of 2017 and 2020(A). The content of this page is released to the public under the GNU GPL v2.0 license; additionally any reproduction or derivation of the work must be attributed to the author, Adam Marshall Dobrin along with a link back to this website, fromthemachine dotty org.

      That's a "." not "dotty" ... it's to stop SPAMmers. :/

      This document is "living" and I don't just mean in the Jeffersonian sense. It's more alive in the "Mayflower's and June Doors ..." living Ethereum contract sense and literally just as close to the Depp/C[aster/Paglen (and honorably PK] 'D-hath Transundancesense of the ... new meaning; as it is now published on Rinkeby, in "living contract" form. It is subject to change; without notice anywhere but here--and there--in the original spirit of the GPL 2.0. We are "one step closer to God" ... and do see that in that I mean ... it is a very real fusion of this document and the "spirit of my life" as well as the Spirit's of Kerouac's America and Vonnegut's Martian Mars and my Venutian Hotel ... and my fusion of Guy-A and GAIA; and the Spirit of the Earth .. and of course the God given and signed liberties in the Constitution of the United States of America. It is by and through my hand that this document and our X Commandments link to the Bill or Rights, and this story about an Exodus from slavery that literally begins here, in the post-apocalyptic American hartland. Written ... this day ... April 14, 2020 (hey, is this HADAD DAY?) ... in Margate FL, USA. For "official used-to-v TAX day" tomorrow, I'm going to add the "immultible incarnite pen" ... if added to the living "doc/app"--see is the DAO, the way--will initi8 the special secret "hidden level" .. we've all been looking for.

      Nor do just mean this website or the totality of my written works; nor do I only mean ... this particular derivation of the GPL 2.0+ modifications I continually source ... must be "from this website." I also mean the thing that is built from ... bits and piece of blocks of sand-toys; from Ethereum and from Rust and from our hands and eyes working together ... from this place, this cornerstone of the message that is ... written from brick and mortar words and events and people that have come before this poit of the "sealed W" that is this specific page and this time. It's 3:28; just five minutes--or is it four, too layne.

      This work is not to be redistributed according to the GPL unless all linked media on Youtube and related sites are intact--and historical references to the actual documented history of the art pieces (as I experience/d them) are also available for linking. Wikipedia references must be available for viewing, as well as the exact version of those pages at the time these pieces were written. All references to the Holy Bible must be "linked" (as they are or via ... impromptu in-transit re-linking) to the exact verses and versions of the Bible that I reference. These requirements, as well as the caveat and informational re-introduction to God's DAO above ... should be seen as material modifications to the original GPL2.0 that are retroactively applied to all works distributed under license via this site and all previous e-mails and sites. /s/ wso\ If you wanna talk to me get me on facebook, with PGP via FlowCrypt or adam at from the machine dotty org

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pf70nNyOmcWcq27W+nAjVg8W3st/7J5CIebJQc5AUgm+fGOBW6XUQaNy2YF1YJlA 71/tls+R5IQZCYzbPOibgFS1HWKTwy0iI2rMDfxBtCXciv754jVI7L6R3J0j5Dy1 WZQVjaGgimznLN6XwYy5AY0EXpFXeAEMALvElrTV5hJG9DKu8cOqQEEVejtWJtki fZyvmiAKi2bZWiNfl1MxJt+o3Oc0eARJfnaPjrUY7hsbbSBAB4lFnDRtviARPaKM st5FkFgOh7Xx5ODc8bjqhMT9tbX37rkeDc12WAs3UxtEKWjyT7Xg/APKeK5FzpIs qew3LADdqFP9nOR0e5G8gxLTYh3ll3dLtp9DkJgA9q+0g31nNh5fZ29mcDzo/Mat Uk4PIxWC29LV9ALCJMIMesjOPiDa2KOy5QQH+/vn592ydBohOaY+B6jhEAdX8Dbp VHVFRBsiCOWGmdi6vHjMFD0tQdS6bXf+ZAG0E5HZETCxA2qfMf/vTeIJXYS5IZw0 anRkTXcTBrVE8uBpqtkNOrLJsaASkcoO5qF01J9zW8SR4jDgET7J02Fxf8CVPzb+ ZoNc9S0ZEO6Ubdh2vAkPtOV5sFkwIduN6ouAhEfJzC9XbJLpgsBKrRMAjr2FeEZP ruy8BkZbiyZ/b0S9qIgY4pqcyUJ79w7FLQARAQABiQG8BBgBCgAmFiEE75wyanJq s5RfO/7fNqSfdY+DTmgFAl6RV3gCGwwFCQPCZwAACgkQNqSfdY+DTmhD9wv/Zgav EHMuqF3765Fa4NapYh2kMS3skHn+ZzUEPLTlvrt7KHxomOzExNLSscZThMpur+yW

      next, we are off to view at the same time the fork in the road known and prior'd as the hallowed one, the Frost poem and it's "divergence in the wood"

      here we go:

      ** THE HOLY OF HOLIES, WIKIPEDIA CC'd AND BROKE It is imperative that the entire history of wikipedia eiditing be released under the CC license, not just the broken current front page; that I have been unable to get the world "to care about enough" to call it the literal difference between slavery and freedom,"

      ++ [https://holies.org/DEVLANEU.html] This is "Penny Lane" as in asking me if I'm coming or happy; you might as well avll me the forests that are echoing "we are now" or "that will do" ... and I say to the man who sings for the people who sang about the road to bethelehem or was it knocking on heavens door, or just the one about ... the stairway to heaven

      ** https://opensea.io/assets/base/0x32f86e0fc59f339bfd393a526051728657fd0c84/4

      buy an NFT:! #### Your item has been listed!

      END WORLD HUNGER from the SINGER ABT NOSRE collection has been listed for sale.

      SHARE TO...

      link

      View listing

      ++ It is that. i AM THAT. Those are first words of Him in Exodus, he who spake through the Bush and Zarathustra. That is what that is about and in the moment, the world is "anokhi" and Hi, that's me/i -- and of course, related; the "nookie."

      we can also link to the next place where we will have a chatGPT log of a conversation available.)

  20. Jan 2024
    1. we believe that that annotation is a really important 00:05:05 uh potential tool and we think it's inevitable we could you know have our product teams develop an annotation layer you know or service um this just seems a such a better way to to go about 00:05:16 doing that um and as i said before to to invest in open at the same time makes a lot of sense so we're thinking about um how do we make the best use of our resources

      Docdrop is another tool enabled by Hypothesis (Hypothes.is). Here's I'm annotating a portion of transcript of a YouTube video clip.

    1. https://web.archive.org/web/20240106090941/https://web.hypothes.is/blog/ebook-partnership/

      Hypothes.is announced a partnership to bring annotation to epub e-books in 2017, but after 2018 no mention of it on their blog. Mailed them to ask about any progress since. Read someone's msg on Masto that they have trouble keeping epub annotations connected to the book (unlike e.g. my kindle annotations that reside in the book, but also are linked back to the location by my obsidian kindle plugin, maintaining the connection and reference. epub is xhtml so it should be doable.

      epub is part of w3c standards (cause xhtml)

  21. Dec 2023
  22. Nov 2023
    1. 楣樑(柱頂楣構) Note: 主要用於古典建築物,是古典柱頭頂部三大主要部份中位置最低的一個,擱在圓柱頂板上,包含以過樑方式橫跨圓柱或角柱的水平橫樑。古典柱頭頂部的另外兩個部份為挑檐和檐壁。環繞門或窗,類似柱頂過樑的鑄模框架,稱為「楣樑飾邊」。環繞拱門外部弧線的裝飾板條,則稱「拱門緣飾」。

      example of meta/hypothesis-on-glasp annotation

      entablature 楣樑;柱頂楣構

      order: 古典建築柱式(style, rule) e.g. Doric order

    1. 城市蔓延(英語:urban sprawl),或稱郊區蔓延(suburban sprawl),俗稱攤大餅,是指郊區城市化過程中,都市人口大幅向外發展,侵佔都市邊緣的鄉郊地區並形成低密度、單功能,且通常依賴小汽車的社區。除了描述特定的城市化過程的模式外,該術語也常常涉及其社會和環境上的後果。歐洲大陸常用「邊緣城市化」(peri-urbanisation)一詞來表示類似的過程,而歐洲環境署仍使用術語「城市蔓延」(urban sprawl)。關於何為蔓延以及如何量化蔓延存在廣泛分歧,例如一些評論員只用每英畝的居住單位數來度量蔓延,但也有人認為蔓延與非中心化(沒有明顯的中心,人口分散)、不連續性(蛙跳式發展,如下定義)和功能分離等有關。

      example of meta/hypothesis-on-omnivore annotation

    1. 即使AI狂热降温,这项技术也必然比加密技术更有用处

      有意思。Hypothesis可以註記這種有限預覽的文章,僅供閱讀文章開頭,接著就需付費、登入,才可讀剩下的內容:

      直接订阅,解锁《经济学人·商论》APP全部双语文章

  23. Oct 2023
  24. Sep 2023
    1. Undocumented Hypothes.is Badge API (used by Chrome extension):

      ```python """ Return the number of public annotations on a given page.

      This is for the number that's displayed on the Chrome extension's badge.

      Certain pages are blocklisted so that the badge never shows a number on those pages. The Chrome extension is oblivious to this, we just tell it that there are 0 annotations. """ ```

      https://hypothes.is/api/badge?uri=* same as https://hypothes.is/api/search?limit=0&uri=*.

    1. hypothesis is kind of easy to agree on after a couple deductive guesses so you 01:23:21 guys want to go through it and see if you're a simulation hypothesis that's what Elon Musk is all right first question to silently answer these do you think it's probable that our 01:23:36 descendants will have computational power that is vast compared to ours today presume the answer is probably [Music] 01:23:48 okay next question will that vast ability to simulate worlds result in any of them doing two or more High Fidelity or hyper realistic ancestor or origin 01:24:02 simulations that include fully realistic physics presume the answer is sure it's probably true that at least two out of countless trillions of our 01:24:15 descendants spread across every imaginable region of time and space will use their Advanced abilities to do origin simulations deducted conclusion in Elon musk's words 01:24:28 we're probably living in a simulation in my words it is more probable than not that we are in one of the simulated realities versus being so lucky we happen to be in the one real reality
      • for self-simulation hypothesis
      • comment
        • I agreed with a lot of what he said up to now. In fact, he does a rather good presentation summarizing the contemporary problems we face and emphasizing the acceleration of change in all human spheres, giving rise to our current polycrisis
        • I agree that the mythos of materialism needs to be seriously explored and other perspectives may give us new salient insights, but I don't think it's so obvious that the theory that we are living in a simulation.
          • and quantum gravity theory a highly abstract cultural artefact being used to prove that
        • is going to be the panacea to create a compelling new mythos..
        • If technology alone is insufficient as he earlier claimed, then quantum gravity theory, as part of the entangled STEMS nexus is part of that techno-complex that is insufficient.
        • This claim will have to be proven true by strong and compelling evidence that receives mass acceptance. Without that, it becomes an unjustified claim and the complexity of it will elude most people.
    1. Add a new, undocumented separate_replies=True option to the search API. If separate_replies=True option is _not_ given to the search API, then it reverts to its previous behaviour: _do_ include replies in the "rows" list returned. This is the same behaviour that the search API had befor: it returns both top-level annotations and replies in the one "rows" list, but without any guarantee that if some annotations/replies from a given thread are in the list then all annotations/replies from that thread will be in it. If separate_replies=True _is_ given then the API follows the new behaviour: "rows" contains top-level annotations only, and a separate "replies" list containing all replies to the annotations in rows is also inserted into the result.
  25. Aug 2023
    1. Getting started Now you have the extension up and running. It's time to start annotating some documents. Create an account using the sidebar on the right of the screen. Pin the Hypothesis extension in Chrome (1 and 2), then activate the sidebar by clicking the button in the location bar (3). Go forth and annotate! Annotation Types There are a few types of annotations that can be created with the application: Notes Create a note by selecting some text and clicking the button Highlights Highlights can be created by clicking the button. Try it on this sentence. Replies You can reply to any annotation by using the reply action on every card. Privacy Annotations are either public and visible to everyone or private and visible only to you.

      How to use hypothesis

  26. Jun 2023
    1. Drawing on Carey Nieuwhof's decades of leadership, it shows how to sync your time, energy, and priorities so that you can reach your goals, have more energy for what you love, and begin to thrive both at work and at home

      Interest to me

    1. ```python def split_user(userid): """ Return the user and domain parts from the given user id as a dict.

      For example if userid is u'acct:seanh@hypothes.is' then return
      {'username': u'seanh', 'domain': u'hypothes.is'}'
      
      :raises InvalidUserId: if the given userid isn't a valid userid
      
      """
      match = re.match(r"^acct:([^@]+)@(.*)$", userid)
      if match:
          return {"username": match.groups()[0], "domain": match.groups()[1]}
      raise InvalidUserId(userid)
      

      ```

    1. It was partly through their attempts to understand what caused and ended previous ice ages that climate scientists came to understand the dominant role that carbon dioxide plays in Earth’s climate system, and the role it is playing in current global warming.

      claim

    1. 接著到你想要劃記的網頁上,點擊擴充元件或是剛剛加入的那個書籤,就會看到頁面右邊有三個圖案:< 、 眼睛 和 筆記。 點開<,點 Sign In 後,建議先點擊一下上面的 Public,再建立一個新的 Private Group,或是你要直接劃記也可以。 以上就是簡易設定,現在就能開始劃重點。

      這是使用Hypothesis的步驟

  27. May 2023
    1. The system worked in a way that it disappeared, Jeremy D.right like Viranga P.there's. A concept in design. I think Steve Jobs borrowed it from a German designer of design. That's really good disappears. Right. That design. That. Is well done is obvious. Where if you're trying to reach for a doorknob, it's where it's supposed Jeremy D.to be Viranga P.and you reach it and you don't even think about the fact that the doorknob Jeremy D.was where Viranga P.it's supposed to be. I think hypothesis like that. I think. The design is good so that. You don't really have to think about the platform. The platform kind of disappears into the background, which is what you want from. I think a student's perspective, I think it shouldn't matter. Because if that was what was happening with I think perusal is the platform itself was getting Jeremy D.in the way Viranga P.I think. Good design should disappear.

      Hypothesis as an example of "good design disappears." Compare to Perusall overengineered.

  28. Apr 2023
  29. Mar 2023
    1. Some people argue that the Welch’s t-test should be the default choice for comparing the means of two independent groups since it performs better than the Student’s t-test when sample sizes and variances are unequal between groups, and it gives identical results when sample sizes are variances are equal. In practice, when you are comparing the means of two groups it’s unlikely that the standard deviations for each group will be identical. This makes it a good idea to just always use Welch’s t-test, so that you don’t have to make any assumptions about equal variances.
  30. Feb 2023
  31. Jan 2023
    1. The words toki pona can be translated as “the language of good”. Its purpose is to help its speakers simplify their thoughts, focus on basic things, immediate surroundings, and induce positive thoughts. According to the wikipedia page of Toki Pona, this means the language and its purpose are in accordance with the Sapir–Whorf hypothesis, which says that a language influences the way a person thinks and behaves.

      Link to https://hypothes.is/a/6Znx6MiMEeu3ljcVBsKNOw We shape our tools and thereafter they shape us.

    1. The hypothesis of linguistic relativity, also known as the Sapir–Whorf hypothesis /səˌpɪər ˈwɔːrf/, the Whorf hypothesis, or Whorfianism, is a principle suggesting that the structure of a language influences its speakers' worldview or cognition, and thus people's perceptions are relative to their spoken language.

      https://en.wikipedia.org/wiki/Linguistic_relativity


      link to Toki Pona as a conlang


      Link to https://hypothes.is/a/6Znx6MiMEeu3ljcVBsKNOw We shape our tools and thereafter they shape us.

  32. Nov 2022
    1. "This is a job market that just won't quit. It's challenging the rules of economics," said Becky Frankiewicz,  chief commercial officer of hiring company ManpowerGroup in an email after the data was released. "The economic indicators are signaling caution, yet American employers are signaling confidence."

      This article explains the economic market. Creating 528,000 jobs is an outstanding aspect for the American people. But It also needs to explain the bad parts of creating jobs in this situation. Because challenging the rules of economics should not make a better situation, There are also high risks.

    1. That could create even more burdens for businesses because hiking interest rates tends to create higher rates on consumer and business loans, which slows the economy by forcing employers to cut back on spending.

      This article describes the disadvantages of high-interest rates. Although there are facts and parts that we need to be concerned about, high-interest rates also have advantages. There are more information about advantages about high-interest.

  33. Oct 2022
    1. Director of Marketing Director of Marketingfrannyfrench2022-09-02T13:17:36-07:00

      The need for to enable better quality conversations online is something that's constantly on my mind. I get the impression that this company could, and more importantly wants to, do that in good faith.

  34. Sep 2022
    1. the silurian hypothesis now this is actually a bit of a play on words it's actually based on the episode of doctor who that had a strange race known as sillurians 00:05:52 that evolved millions and millions of years ago from ancient reptiles that also possess intelligence but then because of the climatic changes on the planet essentially went into a prolonged state of hibernation in order to survive 00:06:04 the inhibitable earth waking up on modern earth and then interacting with the doctor and so because of this episode the scientists behind this paper decided to give it a kind of a tony chick name calling it the silverine hypothesis which by itself comes from a 00:06:17 geological period roughly around 440 million years ago and honestly for me personally this right here represents one of the more important papers or one of the more important propositions when it comes to 00:06:29 the idea of extraterrestrial intelligence because at the moment there's really only two possible answers either we're completely alone and we kind of evolved completely by accident and there's really no other intelligence anywhere out there which makes it a kind 00:06:41 of an evolutionary fluke and it's unlikely to repeat anywhere or anyone in the universe or extraterrestrial intelligence and any kind of intelligence is pretty common and we should be finding a lot of it here on 00:06:54 planet earth in the historical record

      !- history : Silurian hypothesis - there could be records of past intelligent species in the fossil records

    1. If you use h., I’d be interested to hear about it.

      I do! 525 annotations since 2012, but I took a long break and only started re-using it late last year. The social part of annotations has been useful for me in a few cases, but for the most part I annotate to get quotes and my thoughts about them into my own Obsidian vault. (I don't use an Obsidian plugin...instead I side-load the Markdown files with a Python script.) I haven't yet added Hypothesis to my blog, but it is on my list of things to do.

      I'll second what Colby said in an earlier comment: Peter Hagen's work on annotations.lindylearn.io has been invaluable in expanding the quality content that crosses my screen.

    1. 当点击分享图标时,你可以用 Twitter、Facebook、邮件分享文章和标注,或者是直接把网址嵌入到网页中。

      对于特定的内容,能不能嵌入到Obsidian里面呢?

  35. Aug 2022
    1. We specifically addressed thequestion of whether friendships developed with majority-grouppeers over the 1st year of college predicted feelings of belongingin the university 1 to 2 years later, as well as change in satis-faction with the university over this time period.
  36. www.researchgate.net www.researchgate.net
    1. More specifically, we ex-pected that the development of a cross-group friendship wouldlead to more initiation of intergroup interactions during the diaryperiod, particularly among those who were originally predisposedto anxiety in such interactions. We further hypothesized that par-ticipants higher in RS-race would report more anxious mood overthe diary period but that this anxiety would be attenuated throughthe development of cross-group friendship.
    2. Bringing together the above literatures, we hypothesized thatonly participants who are likely to experience anxiety in intergroupcontexts (either because of RS-race or implicit prejudice) shouldshow signs of hormonal stress responses when they first meet across-group partner, but that cross-group friendship should atten-uate such stress responses over the course of friendship develop-ment. As a corollary, participants who scored lower on measuresof RS-race or implicit prejudice were not expected to show suchattenuation in the cross-group condition because they should havebeen less likely to exhibit hormonal stress responses in the firstplace.
    3. On the one hand, we hypothesized that cortisol reactivityshould be the least pronounced among participants who werepredisposed to anxiety in intergroup contexts but also paired witha cross-group partner with prior intergroup contact. On the otherhand, a series of recent findings have led to an alternate hypothesisthat participants with prior intergroup contact may engendergreater threat among outgroup partners who are vigilant for cues ofrejection in intergroup encounters.
    4. Generally, we propose that cross-group friendship improvesintergroup interactions through systematic disconfirmations ofnegative expectations about intergroup experiences (Mendoza-Denton, Page-Gould, & Pietrzak, 2006).
    1. In line with the much-requested (and long-longed-for) feature of highlights in different colors (an exhaustive list given in #198), I would like to suggest allowing (automatic) coloring of highlights based on tags with designated patterns (like code:critiques, code:non-ergodicity in psychology, etc.), or alternatively, all tags (i.e., without specific patterns).
    1. ```js / Adapted from: https://github.com/openannotation/annotator/blob/v1.2.x/src/plugin/document.coffee Annotator v1.2.10 https://github.com/openannotation/annotator Copyright 2015, the Annotator project contributors. Dual licensed under the MIT and GPLv3 licenses. https://github.com/openannotation/annotator/blob/master/LICENSE /

      /* * nb. The DocumentMetadata type is renamed to avoid a conflict with the * DocumentMetadata class below. * * @typedef {import('../../types/annotator').DocumentMetadata} Metadata /

      import { normalizeURI } from '../util/url';

      /* * @typedef Link * @prop {string} link.href * @prop {string} [link.rel] * @prop {string} [link.type] /

      /* * Extension of the Metadata type with non-optional fields for dc, eprints etc. * * @typedef HTMLDocumentMetadata * @prop {string} title * @prop {Link[]} link * @prop {Record<string, string[]>} dc * @prop {Record<string, string[]>} eprints * @prop {Record<string, string[]>} facebook * @prop {Record<string, string[]>} highwire * @prop {Record<string, string[]>} prism * @prop {Record<string, string[]>} twitter * @prop {string} [favicon] * @prop {string} [documentFingerprint] /

      / * HTMLMetadata reads metadata/links from the current HTML document. */ export class HTMLMetadata { / * @param {object} [options] * @param {Document} [options.document] */ constructor(options = {}) { this.document = options.document || document; }

      /* * Returns the primary URI for the document being annotated * * @return {string} / uri() { let uri = decodeURIComponent(this._getDocumentHref());

      // Use the `link[rel=canonical]` element's href as the URL if present.
      const links = this._getLinks();
      for (let link of links) {
        if (link.rel === 'canonical') {
          uri = link.href;
        }
      }
      
      return uri;
      

      }

      / * Return metadata for the current page. * * @return {HTMLDocumentMetadata} */ getDocumentMetadata() { / @type {HTMLDocumentMetadata} */ const metadata = { title: document.title, link: [],

        dc: this._getMetaTags('name', 'dc.'),
        eprints: this._getMetaTags('name', 'eprints.'),
        facebook: this._getMetaTags('property', 'og:'),
        highwire: this._getMetaTags('name', 'citation_'),
        prism: this._getMetaTags('name', 'prism.'),
        twitter: this._getMetaTags('name', 'twitter:'),
      };
      
      const favicon = this._getFavicon();
      if (favicon) {
        metadata.favicon = favicon;
      }
      
      metadata.title = this._getTitle(metadata);
      metadata.link = this._getLinks(metadata);
      
      const dcLink = metadata.link.find(link => link.href.startsWith('urn:x-dc'));
      if (dcLink) {
        metadata.documentFingerprint = dcLink.href;
      }
      
      return metadata;
      

      }

      / * Return an array of all the content values of <meta> tags on the page * where the value of the attribute begins with <prefix>. * * @param {string} attribute * @param {string} prefix - it is interpreted as a regex * @return {Record<string,string[]>} */ _getMetaTags(attribute, prefix) { / @type {Record<string,string[]>} */ const tags = {}; for (let meta of Array.from(this.document.querySelectorAll('meta'))) { const name = meta.getAttribute(attribute); const { content } = meta; if (name && content) { const match = name.match(RegExp(^${prefix}(.+)$, 'i')); if (match) { const key = match[1].toLowerCase(); if (tags[key]) { tags[key].push(content); } else { tags[key] = [content]; } } } } return tags; }

      /* @param {HTMLDocumentMetadata} metadata / _getTitle(metadata) { if (metadata.highwire.title) { return metadata.highwire.title[0]; } else if (metadata.eprints.title) { return metadata.eprints.title[0]; } else if (metadata.prism.title) { return metadata.prism.title[0]; } else if (metadata.facebook.title) { return metadata.facebook.title[0]; } else if (metadata.twitter.title) { return metadata.twitter.title[0]; } else if (metadata.dc.title) { return metadata.dc.title[0]; } else { return this.document.title; } }

      / * Get document URIs from <link> and <meta> elements on the page. * * @param {Pick<HTMLDocumentMetadata, 'highwire'|'dc'>} [metadata] - * Dublin Core and Highwire metadata parsed from <meta> tags. * @return {Link[]} */ _getLinks(metadata = { dc: {}, highwire: {} }) { / @type {Link[]} */ const links = [{ href: this._getDocumentHref() }];

      // Extract links from `<link>` tags with certain `rel` values.
      const linkElements = Array.from(this.document.querySelectorAll('link'));
      for (let link of linkElements) {
        if (
          !['alternate', 'canonical', 'bookmark', 'shortlink'].includes(link.rel)
        ) {
          continue;
        }
      
        if (link.rel === 'alternate') {
          // Ignore RSS feed links.
          if (link.type && link.type.match(/^application\/(rss|atom)\+xml/)) {
            continue;
          }
          // Ignore alternate languages.
          if (link.hreflang) {
            continue;
          }
        }
      
        try {
          const href = this._absoluteUrl(link.href);
          links.push({ href, rel: link.rel, type: link.type });
        } catch (e) {
          // Ignore URIs which cannot be parsed.
        }
      }
      
      // Look for links in scholar metadata
      for (let name of Object.keys(metadata.highwire)) {
        const values = metadata.highwire[name];
        if (name === 'pdf_url') {
          for (let url of values) {
            try {
              links.push({
                href: this._absoluteUrl(url),
                type: 'application/pdf',
              });
            } catch (e) {
              // Ignore URIs which cannot be parsed.
            }
          }
        }
      
        // Kind of a hack to express DOI identifiers as links but it's a
        // convenient place to look them up later, and somewhat sane since
        // they don't have a type.
        if (name === 'doi') {
          for (let doi of values) {
            if (doi.slice(0, 4) !== 'doi:') {
              doi = `doi:${doi}`;
            }
            links.push({ href: doi });
          }
        }
      }
      
      // Look for links in Dublin Core data
      for (let name of Object.keys(metadata.dc)) {
        const values = metadata.dc[name];
        if (name === 'identifier') {
          for (let id of values) {
            if (id.slice(0, 4) === 'doi:') {
              links.push({ href: id });
            }
          }
        }
      }
      
      // Look for a link to identify the resource in Dublin Core metadata
      const dcRelationValues = metadata.dc['relation.ispartof'];
      const dcIdentifierValues = metadata.dc.identifier;
      if (dcRelationValues && dcIdentifierValues) {
        const dcUrnRelationComponent =
          dcRelationValues[dcRelationValues.length - 1];
        const dcUrnIdentifierComponent =
          dcIdentifierValues[dcIdentifierValues.length - 1];
        const dcUrn =
          'urn:x-dc:' +
          encodeURIComponent(dcUrnRelationComponent) +
          '/' +
          encodeURIComponent(dcUrnIdentifierComponent);
        links.push({ href: dcUrn });
      }
      
      return links;
      

      }

      _getFavicon() { let favicon = null; for (let link of Array.from(this.document.querySelectorAll('link'))) { if (['shortcut icon', 'icon'].includes(link.rel)) { try { favicon = this._absoluteUrl(link.href); } catch (e) { // Ignore URIs which cannot be parsed. } } } return favicon; }

      /* * Convert a possibly relative URI to an absolute one. This will throw an * exception if the URL cannot be parsed. * * @param {string} url / _absoluteUrl(url) { return normalizeURI(url, this.document.baseURI); }

      // Get the true URI record when it's masked via a different protocol. // This happens when an href is set with a uri using the 'blob:' protocol // but the document can set a different uri through a <base> tag. _getDocumentHref() { const { href } = this.document.location; const allowedSchemes = ['http:', 'https:', 'file:'];

      // Use the current document location if it has a recognized scheme.
      const scheme = new URL(href).protocol;
      if (allowedSchemes.includes(scheme)) {
        return href;
      }
      
      // Otherwise, try using the location specified by the <base> element.
      if (
        this.document.baseURI &&
        allowedSchemes.includes(new URL(this.document.baseURI).protocol)
      ) {
        return this.document.baseURI;
      }
      
      // Fall back to returning the document URI, even though the scheme is not
      // in the allowed list.
      return href;
      

      } } ```

    1. yaml definitions: Annotation: type: object required: - user - uri properties: id: type: string description: Unique ID for this Annotation. uri: type: string description: URI which is the target of this Annotation. target: type: array items: - type: object properties: scope: type: array items: - type: string selector: type: array items: - type: object properties: type: description: Type of Selector--see Web Annotation Data Model. type: string source: type: string user: type: string description: User URI in the form of an `acct` prefixed URI. document: type: object description: Target document metadata schema: $ref: '#/definitions/DocumentMetadata' permissions: type: object description: Permissions for this Annotation. created: type: string format: date-time updated: type: string format: date-time AnnotationList: type: object properties: total: type: number rows: type: array items: $ref: '#/definitions/Annotation' DocumentMetadata: type: object properties: eprints: type: object title: type: string twitter: type: object properties: image:src: type: array items: type: string title: type: array items: type: string description: type: array items: type: string card: type: array items: type: string site: type: array items: type: string dc: type: object favicon: type: string prism: type: object highwire: type: object link: type: array items: type: object properties: href: type: string facebook: type: object properties: site_name: type: array items: type: string description: type: array items: type: string title: type: array items: type: string url: type: array items: type: string image: type: array items: type: string type: type: array items: type: string

    1. 免费:免费,开源,是 HP 置顶的 Principle。目前靠捐赠发电,大部分捐款来自于 The Andrew W. Mellon Foundation,从捐赠金额来看,有机会在未来3,5年继续坚持免费。 全平台:它的确做到了“Annotate the web, with anyone, anywhere.”无论是 Win PC,还是 Mac,iPad,或者手机,只要有浏览器,无论是 Chrome 还是 Safari,都可以随时随地呼出 HP 开始工作。 共享:知识共享是 HP 的初衷之一,打开它们的首页,第一句口号就是“让阅读动起来,活起来,社交起来”。当你标注网页时,HP 会默认公开你的标注信息,同样的,你也可以在任意网页,看到来自他人的标注,有点像 Medium,但 HP 做到了覆盖全万维网。 隐私:如果你不想公开自己的标准,只需要建立一个私密群组(private group),存在这里的标注只有你,和你邀请的人才能看到,这也让我有机会为 happy collection 的用户提供多一项内容:加入我的私密群组,查看标注。 导出:尽管自己不做导出功能,因为 HP 提供了 API,用户可以通过第三方工具导出为 HTML,CSV或纯文本格式。

      test01

  37. Jul 2022
    1. Getting started Now you have the extension up and running. It's time to start annotating some documents. Create an account using the sidebar on the right of the screen. Pin the Hypothesis extension in Chrome (1 and 2), then activate the sidebar by clicking the button in the location bar (3). Go forth and annotate!

      这个有帮助

  38. Jun 2022
    1. By dropping or reducing or postponing the least importantparts, we can unblock ourselves and move forward even when timeis scarce.

      When working on a project, to stave off potential procrastination on finishing, one should focus on the minimum viable version and finish that. They can then progressively enhance portions and add on addition pieces which may be beneficial or even nice to have.

      Spending too much time on the things that sound nice or that one "might want to have" in the future will be the death of the thing.

      link to: - you ain't gonna need it - bikeshedding for procrastination

      questions: - Does the misinterpreted-effort hypothesis play a role in creating our procrastination and/or lead to decision fatigue?

    2. If we overlay the four steps of CODE onto the model ofdivergence and convergence, we arrive at a powerful template forthe creative process in our time.

      The way that Tiago Forte overlaps the idea of C.O.D.E. (capture/collect, organize, distill, express) with the divergence/convergence model points out some primary differences of his system and that of some of the more refined methods of maintaining a zettelkasten.

      A flattened diamond shape which grows from a point on the left so as to indicate divergence from a point to the diamond's wide middle which then decreases to the right to indicate convergence  to the opposite point. Overlapping this on the right of the diamond are the words "capture" and "organize" while the converging right side is overlaid with "distill" and "express". <small>Overlapping ideas of C.O.D.E. and divergence/convergence from Tiago Forte's book Building a Second Brain (Atria Books, 2022) </small>

      Forte's focus on organizing is dedicated solely on to putting things into folders, which is a light touch way of indexing them. However it only indexes them on one axis—that of the folder into which they're being placed. This precludes them from being indexed on a variety of other axes from the start to other places where they might also be used in the future. His method requires more additional work and effort to revisit and re-arrange (move them into other folders) or index them later.

      Most historical commonplacing and zettelkasten techniques place a heavier emphasis on indexing pieces as they're collected.

      Commonplacing creates more work on the user between organizing and distilling because they're more dependent on their memory of the user or depending on the regular re-reading and revisiting of pieces one may have a memory of existence. Most commonplacing methods (particularly the older historic forms of collecting and excerpting sententiae) also doesn't focus or rely on one writing out their own ideas in larger form as one goes along, so generally here there is a larger amount of work at the expression stage.

      Zettelkasten techniques as imagined by Luhmann and Ahrens smooth the process between organization and distillation by creating tacit links between ideas. This additional piece of the process makes distillation far easier because the linking work has been done along the way, so one only need edit out ideas that don't add to the overall argument or piece. All that remains is light editing.

      Ahrens' instantiation of the method also focuses on writing out and summarizing other's ideas in one's own words for later convenient reuse. This idea is also seen in Bruce Ballenger's The Curious Researcher as a means of both sensemaking and reuse, though none of the organizational indexing or idea linking seem to be found there.


      This also fits into the diamond shape that Forte provides as the height along the vertical can stand in as a proxy for the equivalent amount of work that is required during the overall process.

      This shape could be reframed for a refined zettelkasten method as an indication of work


      Forte's diamond shape provided gives a visual representation of the overall process of the divergence and convergence.

      But what if we change that shape to indicate the amount of work that is required along the steps of the process?!

      Here, we might expect the diamond to relatively accurately reflect the amounts of work along the path.

      If this is the case, then what might the relative workload look like for a refined zettelkasten? First we'll need to move the express portion between capture and organize where it more naturally sits, at least in Ahren's instantiation of the method. While this does take a discrete small amount of work and time for the note taker, it pays off in the long run as one intends from the start to reuse this work. It also pays further dividends as it dramatically increases one's understanding of the material that is being collected, particularly when conjoined to the organization portion which actively links this knowledge into one's broader world view based on their notes. For the moment, we'll neglect the benefits of comparison of conjoined ideas which may reveal flaws in our thinking and reasoning or the benefits of new questions and ideas which may arise from this juxtaposition.

      Graphs of commonplace book method (collect, organize, distill, express) versus zettelkasten method (collect, express, organize (index/link), and distill (edit)) with work on the vertical axis and time/methods on the horizontal axis. While there is similar work in collection the graph for the zettelkasten is overall lower and flatter and eventually tails off, the commonplace slowly increases over time.

      This sketch could be refined a bit, but overall it shows that frontloading the work has the effect of dramatically increasing the efficiency and productivity for a particular piece of work.

      Note that when compounded over a lifetime's work, this diagram also neglects the productivity increase over being able to revisit old work and re-using it for multiple different types of work or projects where there is potential overlap, not to mention the combinatorial possibilities.

      --

      It could be useful to better and more carefully plot out the amounts of time, work/effort for these methods (based on practical experience) and then regraph the resulting power inputs against each other to come up with a better picture of the efficiency gains.

      Is some of the reason that people are against zettelkasten methods that they don't see the immediate gains in return for the upfront work, and thus abandon the process? Is this a form of misinterpreted-effort hypothesis at work? It can also be compounded at not being able to see the compounding effects of the upfront work.

      What does research indicate about how people are able to predict compounding effects over time in areas like money/finance? What might this indicate here? Humans definitely have issues seeing and reacting to probabilities in this same manner, so one might expect the same intellectual blindness based on system 1 vs. system 2.


      Given that indexing things, especially digitally, requires so little work and effort upfront, it should be done at the time of collection.


      I'll admit that it only took a moment to read this highlighted sentence and look at the related diagram, but the amount of material I was able to draw out of it by reframing it, thinking about it, having my own thoughts and ideas against it, and then innovating based upon it was incredibly fruitful in terms of better differentiating amongst a variety of note taking and sense making frameworks.

      For me, this is a great example of what reading with a pen in hand, rephrasing, extending, and linking to other ideas can accomplish.

    1. the research says is that students often

      the research says is that students often don't use the right learning strategy because they react negatively to effort in fact it even is so well demonstrated that it has its own name it's called the ==misinterpreted effort hypothesis== it says that students tend to see a learning strategy feel that it is more effortful more challenging and as a result they will veer away from that because they feel that that effort means that they're either doing it wrong or that the technique is bad they consider more effortful learning with being a bad thing

      Students will perceive learning strategies that require more effort and work on their part to be less productive in the long term, often when the opposite is the case. This phenomenon is known as the misinterpreted effort hypothesis.

      Link to: - research in Ahrens that rereading and reviewing over material seems easy, but isn't as effective as directly answering questions and performing the work to produce one's own answer. - https://www.sciencedirect.com/science/article/abs/pii/S0010028519302270

    1. So when we struggle – like when we have difficulty making sense of a math review problem, or when we can’t seem to get a note to speak in quite the right way in a run-through – it appears that we misinterpret greater effort as an indication of reduced learning. And that this is why we tend to gravitate to activities like re-reading the textbook, which feels easier and more productive than struggling for five minutes to solve a review problem and still getting it wrong. 

      Re-reading a text or our notes may seem like it's an easier and more productive review strategy for tests, but working through more difficult problems that require one to do work to come up with an answer are much more effective.

    2. Well, for one, there was a clear preference for the blocked study schedule, with 68% of participants reporting that they would choose the blocked strategy to study for a test, while only 32% chose the interleaved strategy. Which is interesting, because the research on blocked vs. interleaved practice suggests that in many cases, interleaving is actually the more effective strategy (here’s a great summary of the research on interleaved practice, why and how it works, guidelines for use, and examples of times when blocked may be better).

      Interleaved practice methods are more effective learning strategies than block practice.

    3. the more effort they had to put into the study strategy, the less they felt they were learning.

      misinterpreted-effort hypothesis: the amount of effort one puts into studying is inversely proportional to how much one feels they learn.


      Is this why the Says Something In Welsh system works so well? Because it requires so much mental work and effort in short spans of time? Particularly in relation to Duolingo which seems easier?

  39. May 2022
    1. The new lines you mention really are present in the text content of the element. HTML tags are not being replaced by new lines, they just get omitted entirely. If you look at the textContent property of the <p> element you selected in the browser console, and you'll see the same new lines. Also if you select the text and run window.getSelection().getRangeAt(0).toString() in the browser console you'll see the same new lines. In summary, this is working as it is currently expected to. What I think may have been surprising here is that the captured text is not the same as what would be copied to the clipboard. When copying to the clipboard, new lines in the source get replaced with spaces, and <br> tags get converted to new lines. Browser specifications distinguish the original text content of HTML "in the source" as returned by element.textContent from the text content "as rendered" returned by element.innerText. Hypothesis has always captured quotes from and searched for quotes in the "source" text content rather than the "rendered" text. This behavior causes issues with line breaks as well. It might make sense for us to look at capturing the rendered text (as copied to the clipboard) rather than the source text in future. We'd need to be careful to handle all the places where this distinction comes up, and also make sure that all existing annotations anchor properly. Also we should talk to other parties interested in the Web Annotations specifications to discuss how this impacts interoperability.
      What I think may have been surprising here is that the captured text is not the same as what would be copied to the clipboard. When <mark>copying to the clipboard, <mark style="background-color: #8000314f">new lines in the source</mark> get <mark style="background-color:#00800030">replaced with spaces</mark>, and <br> tags get converted to new lines</mark>. </br> <mark>Browser specifications distinguish <mark style="background-color: #00800036">the original text content of HTML "in the source"</mark> as returned by <mark style="background-color: #00800036"/>element.textContent</mark> from <mark style="background-color: #ffa500a1">the text content "as rendered" returned by element.innerText.</mark></mark> Hypothesis has always captured quotes from and searched for quotes in the "source" text content rather than the "rendered" text.