- Aug 2022
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www.thelancet.com www.thelancet.com
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Karim, S. S. A., & Karim, Q. A. (2021). Omicron SARS-CoV-2 variant: A new chapter in the COVID-19 pandemic. The Lancet, 0(0). https://doi.org/10.1016/S0140-6736(21)02758-6
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www.nature.com www.nature.com
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Lucas, C., Vogels, C. B. F., Yildirim, I., Rothman, J. E., Lu, P., Monteiro, V., Gelhausen, J. R., Campbell, M., Silva, J., Tabachikova, A., Peña-Hernandez, M. A., Muenker, M. C., Breban, M. I., Fauver, J. R., Mohanty, S., Huang, J., Shaw, A. C., Ko, A. I., Omer, S. B., … Iwasaki, A. (2021). Impact of circulating SARS-CoV-2 variants on mRNA vaccine-induced immunity. Nature, 1–9. https://doi.org/10.1038/s41586-021-04085-y
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Pisani, J. (2021, July 9). Amazon to end testing for COVID-19 at warehouses this month. King5.Com. https://www.king5.com/article/news/health/coronavirus/amazon-to-stop-covid-testing/507-63caa9ee-3a30-49af-b2cd-1851637f1807
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www.medrxiv.org www.medrxiv.org
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Kustin, T., Harel, N., Finkel, U., Perchik, S., Harari, S., Tahor, M., Caspi, I., Levy, R., Leschinsky, M., Dror, S. K., Bergerzon, G., Gadban, H., Gadban, F., Eliassian, E., Shimron, O., Saleh, L., Ben-Zvi, H., Amichay, D., Ben-Dor, A., … Stern, A. (2021). Evidence for increased breakthrough rates of SARS-CoV-2 variants of concern in BNT162b2 mRNA vaccinated individuals. MedRxiv, 2021.04.06.21254882. https://doi.org/10.1101/2021.04.06.21254882
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www.huffpost.com www.huffpost.com
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Pearson, C. (2021, September 27). New Study Finds A Huge Perk Of Getting Vaccinated After Having COVID-19. HuffPost UK. https://www.huffpost.com/entry/study-covid-vaccine_l_6151dbbde4b098483a792e18
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twitter.com twitter.com
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www.theguardian.com www.theguardian.com
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Willsher, K. (2021, October 11). French study of over 22m people finds vaccines cut severe Covid risk by 90%. The Guardian. https://www.theguardian.com/world/2021/oct/11/french-study-vaccines-cut-covid-deaths
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www.nature.com www.nature.com
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Dolgin, E. (2021). Omicron is supercharging the COVID vaccine booster debate. Nature. https://doi.org/10.1038/d41586-021-03592-2
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www.theguardian.com www.theguardian.com
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Johnson, S. (2021, June 7). Spat at, abused, attacked: Healthcare staff face rising violence during Covid. The Guardian. http://www.theguardian.com/global-development/2021/jun/07/spat-at-abused-attacked-healthcare-staff-face-rising-violence-during-covid
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www.theguardian.com www.theguardian.com
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Chrisafis, A. (2021, July 12). France mandates Covid health pass for restaurants and cafés. The Guardian. http://www.theguardian.com/world/2021/jul/12/france-mandates-covid-health-pass-for-restaurants-and-cafes
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www.pbs.org www.pbs.org
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American Academy of Pediatrics urges FDA to approve COVID vaccines for children under 12. (2021, September 13). PBS NewsHour. https://www.pbs.org/newshour/show/american-academy-of-pediatrics-urges-fda-to-approve-covid-vaccines-for-children-under-12
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Monto, A. S. (2021). The Future of SARS-CoV-2 Vaccination—Lessons from Influenza. New England Journal of Medicine, 0(0), null. https://doi.org/10.1056/NEJMp2113403
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Varmus, H. (2021, August 31). Covid has revealed the need for genomic sequencing around the world. Financial Times. https://www.ft.com/content/342fd3c3-5a22-49a0-9cef-135f2ccd8700
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www.theguardian.com www.theguardian.com
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Davis, N. (2021, October 18). Valneva Covid vaccine could be as effective as Oxford jab, study suggests. The Guardian. https://www.theguardian.com/society/2021/oct/18/valneva-covid-vaccine-could-be-as-effective-as-oxford-jab-study-suggests
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www.bmj.com www.bmj.com
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Lauring, A. S., Tenforde, M. W., Chappell, J. D., Gaglani, M., Ginde, A. A., McNeal, T., Ghamande, S., Douin, D. J., Talbot, H. K., Casey, J. D., Mohr, N. M., Zepeski, A., Shapiro, N. I., Gibbs, K. W., Files, D. C., Hager, D. N., Shehu, A., Prekker, M. E., Erickson, H. L., … Self, W. H. (2022). Clinical severity of, and effectiveness of mRNA vaccines against, covid-19 from omicron, delta, and alpha SARS-CoV-2 variants in the United States: Prospective observational study. BMJ, 376, e069761. https://doi.org/10.1136/bmj-2021-069761
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www.bmj.com www.bmj.com
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Torjesen, I. (2021). Covid-19: Omicron may be more transmissible than other variants and partly resistant to existing vaccines, scientists fear. BMJ, 375, n2943. https://doi.org/10.1136/bmj.n2943
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inst-fs-iad-prod.inscloudgate.net inst-fs-iad-prod.inscloudgate.net
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Krause, P. R., Fleming, T. R., Peto, R., Longini, I. M., Figueroa, J. P., Sterne, J. A. C., Cravioto, A., Rees, H., Higgins, J. P. T., Boutron, I., Pan, H., Gruber, M. F., Arora, N., Kazi, F., Gaspar, R., Swaminathan, S., Ryan, M. J., & Henao-Restrepo, A.-M. (2021). Considerations in boosting COVID-19 vaccine immune responses. The Lancet, 4. https://doi.org/10.1016/S0140-6736(21)02046-8
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Sandra Ciesek. (2021, December 8). Unsere ersten Daten zur Neutralisation von Omicron versus Delta sind fertig: 2x Biontech, 2x Moderna, 1xAZ/1x Biontech nach 6 Monaten 0% Neutralisation bei Omicron, auch 3x Biontech 3 Monate nach Booster nur 25% NT versus 95% bei Delta. Bis zu 37fache Reduktion Delta vs. Omicron https://t.co/w0gHww26sg [Tweet]. @CiesekSandra. https://twitter.com/CiesekSandra/status/1468465347519041539
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www.nature.com www.nature.com
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Lipsitch, M., Krammer, F., Regev-Yochay, G., Lustig, Y., & Balicer, R. D. (2021). SARS-CoV-2 breakthrough infections in vaccinated individuals: Measurement, causes and impact. Nature Reviews Immunology, 1–9. https://doi.org/10.1038/s41577-021-00662-4
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www.medrxiv.org www.medrxiv.org
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Collier, A. Y., Brown, C. M., Mcmahan, K., Yu, J., Liu, J., Jacob-Dolan, C., Chandrashekar, A., Tierney, D., Ansel, J. L., Rowe, M., Sellers, D., Ahmad, K., Aguayo, R., Anioke, T., Gardner, S., Siamatu, M., Rivera, L. B., Hacker, M. R., Madoff, L. C., & Barouch, D. H. (2021). Immune Responses in Fully Vaccinated Individuals Following Breakthrough Infection with the SARS-CoV-2 Delta Variant in Provincetown, Massachusetts (p. 2021.10.18.21265113). https://doi.org/10.1101/2021.10.18.21265113
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Wise, J. (2021). Winter is coming—But will the gloomiest forecasts come to pass? BMJ, 374, n2357. https://doi.org/10.1136/bmj.n2357
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osf.io osf.io
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Smith, L., Potts, H., Amlôt, R., Fear, N. T., Michie, S., & Rubin, J. (2022). How has the emergence of the Omicron SARS-CoV-2 variant of concern influenced worry, perceived risk, and behaviour in the UK? A series of cross-sectional surveys. OSF Preprints. https://doi.org/10.31219/osf.io/rpcu2
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plus.tagesspiegel.de plus.tagesspiegel.de
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Karberg, S., & Friebe, R. (2022, January 18). Virologe Drosten im Interview: „Wie lange geht diese Quälerei noch weiter?“. https://plus.tagesspiegel.de/wissen/virologe-drosten-im-interview-wie-lange-geht-diese-qualerei-noch-weiter-361636.html
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www.nature.com www.nature.com
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Meng, B., Abdullahi, A., Ferreira, I. A. T. M., Goonawardane, N., Saito, A., Kimura, I., Yamasoba, D., Gerber, P. P., Fatihi, S., Rathore, S., Zepeda, S. K., Papa, G., Kemp, S. A., Ikeda, T., Toyoda, M., Tan, T. S., Kuramochi, J., Mitsunaga, S., Ueno, T., … Gupta, R. K. (2022). Altered TMPRSS2 usage by SARS-CoV-2 Omicron impacts tropism and fusogenicity. Nature, 1–1. https://doi.org/10.1038/s41586-022-04474-x
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www.washingtonpost.com www.washingtonpost.com
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Hamblin, J. (2021, December 9). Perspective | Omicron won’t keep us from ending the pandemic. We’re doing that ourselves. Washington Post. https://www.washingtonpost.com/outlook/2021/12/09/omicron-coronavirus-individual-threat/
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www.newscientist.com www.newscientist.com
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Page, M. L. (2021, March 17). UK variant looks set to cause a surge in global coronavirus cases. New Scientist. https://www.newscientist.com/article/mg24933263-900-uk-variant-looks-set-to-cause-a-surge-in-global-coronavirus-cases/
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assets.publishing.service.gov.uk assets.publishing.service.gov.uk
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SARS-CoV-2 variants of concern and variants under investigation. (2021). 45.
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Vöhringer, H. S., Sanderson, T., Sinnott, M., De Maio, N., Nguyen, T., Goater, R., Schwach, F., Harrison, I., Hellewell, J., Ariani, C. V., Gonçalves, S., Jackson, D. K., Johnston, I., Jung, A. W., Saint, C., Sillitoe, J., Suciu, M., Goldman, N., Panovska-Griffiths, J., … Gerstung, M. (2021). Genomic reconstruction of the SARS-CoV-2 epidemic in England. Nature, 1–11. https://doi.org/10.1038/s41586-021-04069-y
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www.medrxiv.org www.medrxiv.org
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Harris, J. E. (2021). COVID-19 Incidence and Hospitalization During the Delta Surge Were Inversely Related to Vaccination Coverage Among the Most Populous U.S. Counties (p. 2021.08.17.21262195). medRxiv. https://doi.org/10.1101/2021.08.17.21262195
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www.newscientist.com www.newscientist.com
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Le Page, M. (2021, November 22). What we know so far about AY.4.2 and other new coronavirus variants. New Scientist. https://institutions.newscientist.com/article/2298363-what-we-know-so-far-about-ay-4-2-and-other-new-coronavirus-variants/?utm_campaign=echobox&utm_medium=social&utm_source=Twitter
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twitter.com twitter.com
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ReconfigBehSci. (2021, December 14). RT @thehowie: "...The vaccine provided 70 percent protection in fully vaccinated individuals against severe complications that would requir… [Tweet]. @SciBeh. https://twitter.com/SciBeh/status/1470749072160133128
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www.bbc.co.uk www.bbc.co.uk
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How are new Covid cases impacting sport? (n.d.). BBC Sport. Retrieved December 23, 2021, from https://www.bbc.com/sport/59682938
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twitter.com twitter.com
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ReconfigBehSci. (2021, December 14). RT @thehowie: BREAKING South Africa: 82% increase in cases, week over week. 34.9% positive rate. Record 7-day average. Not near platea… [Tweet]. @SciBeh. https://twitter.com/SciBeh/status/1470814593610047490
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twitter.com twitter.com
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Dr Nisreen Alwan 🌻. (2021, December 23). We’re in unchartered territory. Https://t.co/O1GGcXpMll [Tweet]. @Dr2NisreenAlwan. https://twitter.com/Dr2NisreenAlwan/status/1474051397570248716
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twitter.com twitter.com
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Kai Kupferschmidt. (2021, December 10). “the severity profile of Omicron cases must be interpreted along with an understanding of its capacity to re-infect (and infect the vaccinated)“ This is what I have been trying to explain the last few days. As usual @nataliexdean does it better (and in color)! [Tweet]. @kakape. https://twitter.com/kakape/status/1469270407995867139
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twitter.com twitter.com
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Yaniv Erlich. (2021, December 8). Updated table of Omicron neuts studies with @Pfizer results (which did the worst job in terms of reporting raw data). Strong discrepancy between studies with live vs pseudo. Https://t.co/InQuWMAm4l [Tweet]. @erlichya. https://twitter.com/erlichya/status/1468580675007795204
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twitter.com twitter.com
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ReconfigBehSci. (2021, December 12). RT @ryan_landay: > A new diverse genome has appeared within the B.1.1.529 lineage that has all of the shared mutations of B.1.1.529, some o… [Tweet]. @SciBeh. https://twitter.com/SciBeh/status/1470066521615605766
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twitter.com twitter.com
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ReconfigBehSci. (2021, December 9). RT @RachelLavin: As Omicron reality dawns, consider investing in better masks: "....Tight-fitting FFP2 masks provide 75 times better pro… [Tweet]. @SciBeh. https://twitter.com/SciBeh/status/1474030898551087113
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www.theguardian.com www.theguardian.com
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Campbell, D., Sabbagh, D., & Devlin, H. (2022, January 7). Military deployed at London hospitals due to Omicron staff shortages. The Guardian. https://www.theguardian.com/world/2022/jan/07/military-deployed-at-london-hospitals-due-to-omicron-staff-shortages
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twitter.com twitter.com
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ReconfigBehSci. (2021, November 26). RT @mvankerkhove: Following the meeting of the @WHO TAG-VE today, WHO classifies B.1.1.529 as a variant of concern named Omicron. We call… [Tweet]. @SciBeh. https://twitter.com/SciBeh/status/1464302372100976650
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twitter.com twitter.com
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ReconfigBehSci. (2021, December 12). RT @EricTopol: If you think Prior Covid protects against Omicron (B.1.1.529), think again https://medrxiv.org/content/10.1101/2021.12.08.21267491v1 and "Neutralizing antibo… [Tweet]. @SciBeh. https://twitter.com/SciBeh/status/1470434736304803845
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twitter.com twitter.com
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ReconfigBehSci. (2021, November 26). vaccine equity has been a disaster, but I do wonder whether the exclusive focus on donations does the US/EU comparison justice. The EU allowed the export of huge numbers of EU produced doses at a time when the US did not (and EU itself was struggling to meet demand). [Tweet]. @SciBeh. https://twitter.com/SciBeh/status/1464255575416520749
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twitter.com twitter.com
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ReconfigBehSci on Twitter: “RT @BNODesk: BREAKING: U.S. reports 716,714 new coronavirus cases, setting world record for cases in one day” / Twitter. (n.d.). Retrieved January 7, 2022, from https://twitter.com/SciBeh/status/1478987541332348933
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Karan, A. (2022). We cannot afford to repeat these four pandemic mistakes. BMJ, 376, o631. https://doi.org/10.1136/bmj.o631
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twitter.com twitter.com
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ReconfigBehSci. (2021, December 23). Risk of hospital stay 40% lower with Omicron than Delta, UK data suggests https://t.co/VupN8hY4qq [Tweet]. @SciBeh. https://twitter.com/SciBeh/status/1473916654421643266
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twitter.com twitter.com
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ReconfigBehSci. (2021, November 26). maybe this is a good moment to remind people that makers of mRNA vaccines have been extensively prepping for the possibility of new variants. Biontech/Pfizer have given a timeline of 100 days to the delivery of a retooled version of their vaccine [Tweet]. @SciBeh. https://twitter.com/SciBeh/status/1464225264523747359
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www.theatlantic.com www.theatlantic.com
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Kissane, E. (2021, December 23). We’re About to Lose Track of the Pandemic. The Atlantic. https://www.theatlantic.com/ideas/archive/2021/12/were-about-to-lose-track-of-the-pandemic/621097/
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twitter.com twitter.com
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ReconfigBehSci. (2021, December 11). RT @MackayIM: Booster access brought forward to slow spread of Omicron COVID-19 variant https://t.co/PukbPydylw [Tweet]. @SciBeh. https://twitter.com/SciBeh/status/1469633384511119364
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Eric Topol. (2022, January 2). As the world turns.....vertical the Omicron signature (|) @OurWorldInData https://t.co/LOBiaiBapD [Tweet]. @EricTopol. https://twitter.com/EricTopol/status/1477433315896430592
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ReconfigBehSci. (2021, December 13). RT @DrEricDing: 11) Omicron is doubling every 1.6 days in UK 🇬🇧 according to @DrWilliamKu’s figure. That’s way faster growth than in South… [Tweet]. @SciBeh. https://twitter.com/SciBeh/status/1470451594378502154
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Prof. Christina Pagel. (2021, December 23). UKHSA surveillance report shows reinfections rising sharply as Omicron takes hold https://t.co/UGArY4sbOA [Tweet]. @chrischirp. https://twitter.com/chrischirp/status/1474041921249189896
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www.theguardian.com www.theguardian.com
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Thomas, T., & Duncan, P. (2021, December 23). If Omicron is the dominant variant in UK, why is the number of confirmed cases so low? The Guardian. https://www.theguardian.com/world/2021/dec/23/if-omicron-is-the-dominant-variant-in-uk-why-is-the-number-of-confirmed-cases-so-low
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ReconfigBehSci. (2021, December 13). Important update on the now withdrawn @BallouxFrancois tweet identifying hopeful turning of the corner in SA omicron data [Tweet]. @SciBeh. https://twitter.com/SciBeh/status/1470311016114364420
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ReconfigBehSci. (2021, December 11). RT @DrEricDing: DOUBLING % in one day: The spike of probable #Omicron variant in Scotland🏴 has critically surged—Now at 13.3%, up fro… [Tweet]. @SciBeh. https://twitter.com/SciBeh/status/1469596523222781954
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ReconfigBehSci. (2021, December 8). RT @kallmemeg: NEW: @UKHSA Mini Omicron Update Omicron VOC-21NOV-01 (B.1.1.529) update on cases, S gene target failure and risk assessment… [Tweet]. @SciBeh. https://twitter.com/SciBeh/status/1468673329494216726
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twitter.com twitter.com
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John Burn-Murdoch. (2021, November 25). Five quick tweets on the new variant B.1.1.529 Caveat first: Data here is very preliminary, so everything could change. Nonetheless, better safe than sorry. 1) Based on the data we have, this variant is out-competing others far faster than Beta and even Delta did 🚩🚩 https://t.co/R2Ac4e4N6s [Tweet]. @jburnmurdoch. https://twitter.com/jburnmurdoch/status/1463956686075580421
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www.cnn.com www.cnn.com
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CNN, I. K. (n.d.). Vaccine inequity and hesitancy made the Omicron variant more likely, scientists say. CNN. Retrieved December 23, 2021, from https://www.cnn.com/2021/11/28/world/omicron-coronavirus-variant-vaccine-inequity-intl-cmd/index.html
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ReconfigBehSci. (2021, December 22). RT @chrischirp: Positivity rising steeply too—There are definitely many more people we aren’t catching https://t.co/4xDPwYQtrx [Tweet]. @SciBeh. https://twitter.com/SciBeh/status/1473695678610214927
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ReconfigBehSci on Twitter: “RT @chrischirp: As well as Tom’s new one (B.1.1.529), C.1.2 seems to be spreading in S Africa—C.1.2 was the one with lots of worrying mut…” / Twitter. (n.d.). Retrieved December 23, 2021, from https://twitter.com/SciBeh/status/1463597407082532864
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ReconfigBehSci. (2021, December 16). RT @MadsAlbertsen85: #Omicron update from Denmark. Omicron cases on the 12th of December adjusted up to 20.5% (+2%). Omicron is now having… [Tweet]. @SciBeh. https://twitter.com/SciBeh/status/1471516083819462670
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ReconfigBehSci. (2021, December 11). RT @thehowie: BREAKING: Hospitalizations South Africa Hospitalizations⬆️67% week over week. Gauteng Province⬆️66%. GP⬆️1.6% from yesterd… [Tweet]. @SciBeh. https://twitter.com/SciBeh/status/1469685234149072897
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ReconfigBehSci. (2021, December 9). a rather worrying development- a (local) newspaper “fact checking” the new German health minister simply by interviewing a virologist who happens to have a different view. There’s simply no established “fact” as to the severity of omicron in children at this point in time [Tweet]. @SciBeh. https://twitter.com/SciBeh/status/1469037817481334786
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Trevor Bedford. (2021, December 11). We find that logistic growth of Omicron sequence fraction looks similar between the UK, the US and Germany with roughly 1% of sequenced cases in all three countries being Omicron on Dec 1. 3/10 https://t.co/De0t2xreU9 [Tweet]. @trvrb. https://twitter.com/trvrb/status/1469784757261127685
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www.nature.com www.nature.com
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Gollub, R. L. (2022). Brain changes after COVID revealed by imaging. Nature. https://doi.org/10.1038/d41586-022-00503-x
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twitter.com twitter.com
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ReconfigBehSci. (2021, December 17). RT @EricTopol: No evidence that Omicron is less severe, new @imperialcollege study reports https://ft.com/content/020534b3-5a54-4517-9fd1-167a5db50786 https://t.co/5YYzJ6tVtc [Tweet]. @SciBeh. https://twitter.com/SciBeh/status/1472156681098469380
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ReconfigBehSci. (2021, November 26). RT @HZiauddeen: 🧵 COVID-19 & B.1.1.529: A chance for govt & others to change their mind and their approach? While we are still gathering d… [Tweet]. @SciBeh. https://twitter.com/SciBeh/status/1464200877888184324
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ReconfigBehSci. (2021, December 22). RT @chrishendel: We need increased targeted measures now to slow the spread of #Omicron by @DrSarahHal via @bmj_latest https://t.co/3Tx… [Tweet]. @SciBeh. https://twitter.com/SciBeh/status/1473987200509521925
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www.washingtonpost.com www.washingtonpost.com
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Perspective | Even the best-case scenario with omicron will still be bad. (n.d.). Washington Post. Retrieved December 23, 2021, from https://www.washingtonpost.com/outlook/2021/12/21/omicron-mild-cases-numbers/
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Covid: Dutch go into Christmas lockdown over Omicron wave. (2021, December 18). BBC News. https://www.bbc.com/news/world-europe-59713503
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twitter.com twitter.com
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Nature Portfolio. (2021, October 15). A study in @NatureMedicine indicates that the effectiveness of the Pfizer/BioNTech and Oxford-AstraZeneca vaccines against SARS-CoV-2 infections with symptoms or high viral burden is reduced with the Delta variant compared to the Alpha variant. Https://go.nature.com/3vecpoj https://t.co/XQdnMYguFz [Tweet]. @NaturePortfolio. https://twitter.com/NaturePortfolio/status/1449145321188216836
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twitter.com twitter.com
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Prof. Shane Crotty. (2021, October 19). 1/ The regular vaccines give great booster responses against Delta and other variants This was first shown by Moderna, with “original recipe” vaccine booster, compare to Beta booster. Https://nature.com/articles/s41591-021-01527-y https://t.co/g7YDwGIURP [Tweet]. @profshanecrotty. https://twitter.com/profshanecrotty/status/1450489709050744833
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twitter.com twitter.com
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ReconfigBehSci [@SciBeh]. (2021, November 26). RT @mvankerkhove: I thank researchers from 🇿🇦 and 🇧🇼 for sharing information with @WHO & the world about B.1.1.529 variant that has been re… [Tweet]. Twitter. https://twitter.com/SciBeh/status/1464196599773642779
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twitter.com twitter.com
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ReconfigBehSci. (2021, December 20). RT @thehowie: South Africa Deaths (7 day average) are near double levels of a few weeks ago. They will go up further. They are only 7.5%… [Tweet]. @SciBeh. https://twitter.com/SciBeh/status/1472991477672419334
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www.eurekalert.org www.eurekalert.org
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Yale researchers develop RNA-based therapy that clears SARS-CoV-2 from mice. (n.d.). EurekAlert! Retrieved January 9, 2022, from https://www.eurekalert.org/news-releases/934454
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- May 2022
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www.ncbi.nlm.nih.gov www.ncbi.nlm.nih.gov
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Embryonal rhabdomyosarcoma (ERMS) of the uterus has recently been shown to frequently harbor DICER1 mutations.
HGNCID:
Tags
- GeneName: DICER1
- Mutation: c.3580delA
- case mut: f 28-67
- Family Information: not identified
- Zygosity: Some Cases displayed homozygosity
- Mutation: 5428 G>C
- PMID (PubMed ID): 33846547
- Mutation: c.4267G>T
- Mutation: c5113G>A
- case wt: m&f 0.5-19
- Variant: Clinvar ID not identified
- Mutation: c.4420A>G
- Mutation: c.5125G > A
- Mutation: c.5438 A> C
- pathogenicity: only 2 of 17 patients died from disease
- Mutation: c.5428G>T
- Inheritance Pattern: Non- inheritance(DNA methylation)
- Disease Entity: Embryonal rhabdomyosarcoma (ERMS)
Annotators
URL
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- Apr 2022
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www.epi-phare.fr www.epi-phare.fr
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Covid-19: Efficacité vaccinale. (2021, October 11). EPI-PHARE. https://www.epi-phare.fr/rapports-detudes-et-publications/impact-vaccination-covid-octobre-2021/
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www.nytimes.com www.nytimes.com
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Times, T. N. Y. (2020, March 3). Coronavirus in the U.S.: Latest Map and Case Count. The New York Times. https://www.nytimes.com/interactive/2021/us/covid-cases.html
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www.covid-19-mobility.org www.covid-19-mobility.org
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Schlosser, F. (2021, November 29). Omicron—Import Risk. Covid-19 Mobility Project. https://www.covid-19-mobility.org/reports/importrisk_omicron/
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twitter.com twitter.com
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Shalin Naik [@shalinhnaik]. (2021, October 14). 📢The first episode of the @thejabgab http://thejabgab.com is LIVE!! 🎙 Join me and the fabulous comedians @nazeem_hussain and @calbo as they chat about the Delta variant, vaccines …. And cows? With experts @DrKGregorevic and @BedouiSammy! Search your fav platform or... Https://t.co/bo4HiRfqF6 [Tweet]. Twitter. https://twitter.com/shalinhnaik/status/1448510610837159939
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Shalin Naik. (2021, October 14). 📢The first episode of the @thejabgab http://thejabgab.com is LIVE!! 🎙 Join me and the fabulous comedians @nazeem_hussain and @calbo as they chat about the Delta variant, vaccines …. And cows? With experts @DrKGregorevic and @BedouiSammy! Search your fav platform or... Https://t.co/bo4HiRfqF6 [Tweet]. @shalinhnaik. https://twitter.com/shalinhnaik/status/1448510610837159939
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twitter.com twitter.com
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ReconfigBehSci [@SciBeh]. (2021, November 1). RT @HJWesteneng: Growth advantage and extrapolation of AY.4.2 based on Sanger Institute data in the UK (multilevel multinomial model). Base… [Tweet]. Twitter. https://twitter.com/SciBeh/status/1455467011509731332
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twitter.com twitter.com
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Dr Dominic Pimenta [@DrDomPimenta]. (2021, December 15). An illustration of communicating risk with “less severe” variants: [Thread] Assume Omicron is 4x more transmissible than Delta. [1] Assume Omicron leads to 1/3 less admissions than Delta. [Figure below] Assume 1 in 100 cases of Delta are admitted to hospital. Https://t.co/XtnVwoOrUo [Tweet]. Twitter. https://twitter.com/DrDomPimenta/status/1471094002808242177
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twitter.com twitter.com
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ReconfigBehSci [@SciBeh]. (2021, November 26). RT @timcolbourn: @kallmemeg so no cases of B.1.1.529 cases in UK as of Mon 22nd Nov? Do you know when the S-gene drop out PCR results for… [Tweet]. Twitter. https://twitter.com/SciBeh/status/1464320681315905542
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Pfizer and BioNTech Provide Update on Omicron Variant | Pfizer. (n.d.). Retrieved April 22, 2022, from https://www.pfizer.com/news/press-release/press-release-detail/pfizer-and-biontech-provide-update-omicron-variant
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twitter.com twitter.com
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ReconfigBehSci [@SciBeh]. ‘RT @vikkypaedia: B.1.1.529 Seems to Have Gone from 0.1% to 50% in Just a Couple of Weeks, When It Took Delta Several Months to Achieve That…’. Tweet. Twitter, 26 November 2021. https://twitter.com/SciBeh/status/1464194450406752282.
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twitter.com twitter.com
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ReconfigBehSci [@SciBeh]. (2021, November 26). RT @macroliter: 👋Hi Journalists! Are you interested in covering the new B.1.1.529 #B11529 variant🦠? Here’s a link to a TABLE with the name… [Tweet]. Twitter. https://twitter.com/SciBeh/status/1464195246175272984
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www.theguardian.com www.theguardian.com
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The Guardian. ‘We Can Prevail over Omicron. We Just Need to Use the Tools We Have’, 1 December 2021, sec. Opinion. https://www.theguardian.com/commentisfree/2021/dec/01/we-can-prevail-over-omicron-use-tools-we-have.
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www.medrxiv.org www.medrxiv.org
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Pérez-Then, E., Lucas, C., Monteiro, V. S., Miric, M., Brache, V., Cochon, L., Vogels, C. B. F., Cruz, E. D. la, Jorge, A., Santos, M. D. los, Leon, P., Breban, M. I., Billig, K., Yildirim, I., Pearson, C., Downing, R., Gagnon, E., Muyombwe, A., Razeq, J., … Iwasaki, A. (2021). Immunogenicity of heterologous BNT162b2 booster in fully vaccinated individuals with CoronaVac against SARS-CoV-2 variants Delta and Omicron: The Dominican Republic Experience (p. 2021.12.27.21268459). medRxiv. https://doi.org/10.1101/2021.12.27.21268459
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twitter.com twitter.com
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Nathan Grubaugh [@NathanGrubaugh]. (2021, September 24). Hi @Newsweek 👋. I understand that #variant news has been slow recently with the near-complete dominance of Delta, but do you really need to go and make things up? Lineage R.1 is not a concern. Let me briefly explain why. (1/4) https://t.co/OD46PsXZEu [Tweet]. Twitter. https://twitter.com/NathanGrubaugh/status/1441522760832933888
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www.nature.com www.nature.com
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Levine-Tiefenbrun, M., Yelin, I., Alapi, H., Katz, R., Herzel, E., Kuint, J., Chodick, G., Gazit, S., Patalon, T., & Kishony, R. (2021). Viral loads of Delta-variant SARS-CoV-2 breakthrough infections after vaccination and booster with BNT162b2. Nature Medicine, 1–3. https://doi.org/10.1038/s41591-021-01575-4
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www.covid-datascience.com www.covid-datascience.com
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Morris, J. (2021, August 17). Israeli data: How can efficacy vs. severe disease be strong when 60% of hospitalized are vaccinated? Covid Data Science. https://www.covid-datascience.com/post/israeli-data-how-can-efficacy-vs-severe-disease-be-strong-when-60-of-hospitalized-are-vaccinated
Tags
- COVID-19
- asymptomatic
- dose
- Pfizer
- lang:en
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- symptomatic
- is:blog
- effective
- efficacy
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- vaccine
Annotators
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www.abc.net.au www.abc.net.au
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Scott, national medical reporter S., & Thorne, the S. R. T. L. (2021, July 5). The Delta COVID variant is spreading overseas. Here’s why experts say it’s “absolutely essential” to protect children. ABC News. https://www.abc.net.au/news/2021-07-06/children-need-covid-protection-vaccines-experts-say/100269228
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Sanderson, K. (2021). COVID vaccines protect against Delta, but their effectiveness wanes. Nature. https://doi.org/10.1038/d41586-021-02261-8
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twitter.com twitter.com
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Carl T. Bergstrom. (2021, August 18). 1. There has been lots of talk about recent data from Israel that seem to suggest a decline in vaccine efficacy against severe disease due to Delta, waning protection, or both. This may have even been a motivation for Biden’s announcement that the US would be adopting boosters. [Tweet]. @CT_Bergstrom. https://twitter.com/CT_Bergstrom/status/1427767356600688646
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www.nature.com www.nature.com
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Tao, K., Tzou, P. L., Nouhin, J., Gupta, R. K., de Oliveira, T., Kosakovsky Pond, S. L., Fera, D., & Shafer, R. W. (2021). The biological and clinical significance of emerging SARS-CoV-2 variants. Nature Reviews Genetics, 1–17. https://doi.org/10.1038/s41576-021-00408-x
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twitter.com twitter.com
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Eric Topol. (2021, June 9). Despite increasing incentives, the US vaccination campaign is really struggling. Notably, the top 5 states are approaching 60% total population fully vaccinated which should provide strong protection vs the delta variant. A different story for the bottom 5 states @OurWorldInData https://t.co/boqk3Khhuc [Tweet]. @EricTopol. https://twitter.com/EricTopol/status/1402413221667954690
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twitter.com twitter.com
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Adam Kucharski. (2021, March 11). New summary report on SARS-CoV-2 variants of concern and variants of interest in the UK: https://t.co/hJFljrN22E via @fact_covid https://t.co/43EYkfYzJO [Tweet]. @AdamJKucharski. https://twitter.com/AdamJKucharski/status/1370036245557051401
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Carlos del Rio. (2021, April 7). U.K. variant now dominant form of COVID in US @CDCDirector As predicted B.1.1.7 is now the predominant SARS-CoV-2 strain in the US. Let’s remember it is much more transmissible and likely also more severe. Vaccines do cover it. @ajc https://t.co/Wc4oaYkxqR [Tweet]. @CarlosdelRio7. https://twitter.com/CarlosdelRio7/status/1379816377356333057
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Hilda Bastian, PhD. (2021, February 6). Unofficial unnamed AstraZeneca insider says they are doing the interim analysis for the US trial of the Oxford vaccine. AstraZeneca spokesperson says 4-6 weeks till data release. Https://t.co/VUHgbHN02d One is wrong? Or they’ll release only when have FDA minimum follow-up? Https://t.co/LgjfX8AIti [Tweet]. @hildabast. https://twitter.com/hildabast/status/1357862227106095105
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twitter.com twitter.com
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Alessandro Vespignani. (2021, April 14). “Genomics and epidemiology of the P.1 SARS-CoV-2 lineage in Manaus, Brazil”—P.1 may be 1.7–2.4-fold more transmissible—Previous (non-P.1) infection provides 54–79% of the protection against infection with P.1 that it provides against non-P.1 lineages https://t.co/aUpL4YOFYo https://t.co/YniaLb9YiF [Tweet]. @alexvespi. https://twitter.com/alexvespi/status/1382370044374511621
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Joshua Weitz. (2021, April 7). The same approaches that work against SARS-CoV-2 work against variants like B.1.1.7: Mask Avoid indoor gatherings Socialize outdoors And, reinforces the need to continue to scale-up vaccine administration to all 16+. [Tweet]. @joshuasweitz. https://twitter.com/joshuasweitz/status/1379820197696180233
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twitter.com twitter.com
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nature. (2021, April 16). Coronavirus variants: Where do they come from? How do we spot them? What do they mean for COVID vaccines, and future of the pandemic? Https://t.co/NRbORu2hoF [Tweet]. @Nature. https://twitter.com/Nature/status/1383093697374474240
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Prof. Christina Pagel. (2021, December 29). Omicron was dominant everywhere in England by Christmas https://t.co/x58pJi7VcD [Tweet]. @chrischirp. https://twitter.com/chrischirp/status/1476161382852796419
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Pan-Hammarström lab. (2022, January 7). Our new study: Heterogeneous vaccination strategy with inactivated vaccine + mRNA booster elicits strong B and T cell response against the WT and VOC including Omicron @VirusesImmunity https://t.co/aBiN9anMBL [Tweet]. @panhammarstrom. https://twitter.com/panhammarstrom/status/1479449892410044419
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twitter.com twitter.com
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(20) Prof. Christina Pagel on Twitter: “THREAD (a bit delayed) on UK & covid: TLDR: flattish cases overall are masking differences between nations, regions & age groups. And we’re still out of whack with Europe. 1/20” / Twitter. (n.d.). Retrieved October 4, 2021, from https://twitter.com/chrischirp/status/1443261013911085056
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Anthony J Leonardi, PhD, MS. (2022, January 23). Calling all GBD fans, your continued reinfection loyalty card. Nice one, @PeteUK7 https://t.co/AEMpdI5sr9 [Tweet]. @fitterhappierAJ. https://twitter.com/fitterhappierAJ/status/1485260239557509128
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twitter.com twitter.com
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ReconfigBehSci. (2021, March 8). RT @rozeggo: New study on mortality of B.1.1.7 using health records from England. We found the variant of concern (VOC) was 1.67x more like… [Tweet]. @SciBeh. https://twitter.com/SciBeh/status/1369567353722310657
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ReconfigBehSci. (2021, May 7). RT @kallmemeg: The @PHE_uk Variant Technical Briefing 10 now published Confirms B.1.617.2 upgraded to a VOC due to transmissibility conce… [Tweet]. @SciBeh. https://twitter.com/SciBeh/status/1391209724285050883
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ReconfigBehSci. (2021, February 9). RT @ChristoPhraser: Our paper on evaluating the first three months of the NHS COVID-19 app is out now as a pre-print. A 🧵 1/n https://t.co/… [Tweet]. @SciBeh. https://twitter.com/SciBeh/status/1359132102927798275
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twitter.com twitter.com
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ReconfigBehSci on Twitter: ‘RT @AJWhisky: Missed this yesterday, but excellent once again from John. Largely reassuring on B.1.617.2 as things stand https://t.co/GtgJ…’ / Twitter. (n.d.). Retrieved 21 May 2021, from https://twitter.com/SciBeh/status/1391201750758031362
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Prof. Christina Pagel. (2021, May 3). THREAD: Update on B.1.617 (‘India’) variant in England using latest data from the Sanger institute. This data excludes sequenced cases from travellers & surge testing so ‘should be an approximately random sample of positive tests in the community’ TLDR: warning signs! 1/10 https://t.co/0UzhM8GNIA [Tweet]. @chrischirp. https://twitter.com/chrischirp/status/1389273187586875396
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ReconfigBehSci on Twitter: ‘RT @dgurdasani1: The bigger picture is sadly that we’re seeing rapid spread of B.1.617.2 among school age children in many parts of England…’ / Twitter. (n.d.). Retrieved 16 August 2021, from https://twitter.com/SciBeh/status/1396887312059944962
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(1) ReconfigBehSci on Twitter: ‘RT @ScottGottliebMD: The U.K. is experiencing a growing surge of COVID infections with a new variant that appears more pathogenic, and that…’ / Twitter. (n.d.). Retrieved 21 June 2021, from https://twitter.com/SciBeh/status/1402048528189300737
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BU Epi COVID Response Corps. (2021, February 17). We’ve seen so many vaccine questions, we did two videos! Here’s part 1 of our vaccine FAQ: https://t.co/gYASlhiwmm [Tweet]. @EpiCOVIDCorps. https://twitter.com/EpiCOVIDCorps/status/1362099096102854657
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Denise Dewald, MD 🗽. (2021, August 12). Here are some modeling predictions for the delta variant from COVSIM (group at North Carolina State): PLEASE CHECK THIS OUT - RESOURCES TO SHARE WITH YOUR SCHOOL DISTRICT School-level COVID-19 Modeling Results for North Carolina for #DeltaVariant https://t.co/zU5hB9bKlY [Tweet]. @denise_dewald. https://twitter.com/denise_dewald/status/1425626289399009288
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Prof. Shane Crotty. (2021, October 15). And here https://t.co/aDPrQ17AUD [Tweet]. @profshanecrotty. https://twitter.com/profshanecrotty/status/1449030846711681025
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Prof. Christina Pagel. (2021, May 23). LONG THREAD on B.1.617.2 & latest PHE data covering: 1) latest tech report on B.1.617.2 (aka ‘India’ variant) 2) vaccine efficacy against B.1.617.2 3) consequences for roadmap 4) avoidability... Or not. [Tweet]. @chrischirp. https://twitter.com/chrischirp/status/1396574267349872644
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Marc Lipsitch. (2021, July 20). At the risk of boiling down too much and certainly losing some detail, one way to summarize this wonderful thread is that when we think about vaccine effectiveness, we should think of 4 key variables: 1 which vaccine, 2 age of the person, 3 how long after vax, 4 vs what outcome. [Tweet]. @mlipsitch. https://twitter.com/mlipsitch/status/1417595538632060931
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Prof. Christina Pagel 🇺🇦. (2021, November 25). THREAD on the new variant B.1.1.529 summarising what is known from the excellent South African Ministry of Health meeting earlier today TLDR: So much uncertain but what is known is extremely worrying & (in my opinion) we should revise red list immediately. This is why: 1/16 [Tweet]. @chrischirp. https://twitter.com/chrischirp/status/1463885539619311616
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BNO/Medriva Newsroom [@medriva]. (2021, November 26). South Africa’s health minister says, based on a small sample of Omicron cases, the majority of hospital patients are unvaccinated: ‘It indicates that the vaccines are providing protection’ [Tweet]. Twitter. https://twitter.com/medriva/status/1464327805836083201
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3 big questions about the Biden administration’s COVID response in 2022. (2021, December 30). PBS NewsHour. https://www.pbs.org/newshour/health/3-big-questions-about-the-biden-administrations-covid-response-in-2022
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www.medrxiv.org www.medrxiv.org
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Abu-Raddad, L. J., Chemaitelly, H., Ayoub, H. H., AlMukdad, S., Tang, P., Hasan, M. R., Coyle, P., Yassine, H. M., Al-Khatib, H. A., Smatti, M. K., Al-Kanaani, Z., Al-Kuwari, E., Jeremijenko, A., Kaleeckal, A. H., Latif, A. N., Shaik, R. M., Abdul-Rahim, H. F., Nasrallah, G. K., Al-Kuwari, M. G., … Bertollini, R. (2022). Effectiveness of BNT162b2 and mRNA-1273 COVID-19 boosters against SARS-CoV-2 Omicron (B.1.1.529) infection in Qatar (p. 2022.01.18.22269452). medRxiv. https://doi.org/10.1101/2022.01.18.22269452
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Prof. Shane Crotty. (2021, December 8). 3 studies today on antibodies & Omicron. 🔵 There may be a large drop in neutralization of Omicron 🔵 Antibodies stop Omicron well in hybrid immunity (infected+vax) 🔵 Sotrovimab is active versus Omicron Take home: Get vaccinated. Get boosted. Immune system is clever. 🧵 1/n [Tweet]. @profshanecrotty. https://twitter.com/profshanecrotty/status/1468390479280574472
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www.theguardian.com www.theguardian.com
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Sample, I., & Walker, P. (2021, December 7). Scientists find ‘stealth’ version of Omicron that may be harder to track. The Guardian. https://www.theguardian.com/world/2021/dec/07/scientists-find-stealth-version-of-omicron-not-identifiable-with-pcr-test-covid-variant
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www.ons.gov.uk www.ons.gov.uk
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Coronavirus (COVID-19) Infection Survey, UK: 29 October 2021, Office for National Statistics
Tags
- positive
- COVID-19
- analysis
- lang:en
- is:webpage
- trend
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- Office for National Statistics
- report
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- graph
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- variant
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Annotators
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Callaway, E. (2021). Heavily mutated Omicron variant puts scientists on alert. Nature, 600(7887), 21–21. https://doi.org/10.1038/d41586-021-03552-w
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Trevor Bedford on Twitter. (n.d.). Twitter. Retrieved 1 April 2022, from https://twitter.com/trvrb/status/1447566558973231104
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- Mar 2022
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ReconfigBehSci. (2022, February 27). RT @theosanderson: BA.1 and BA.2 prevalence by region from ONS Community Infection survey https://t.co/BkBFpP9O48 [Tweet]. @SciBeh. https://twitter.com/SciBeh/status/1498205787948294145
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Mia Malan. (2021, November 25). [Thread] What is the potential impact of the new B.1.1.529 #COVID19 variant? @rjlessells: 1. It’s relatively simple to detect some B.1.1.529 cases, as it’s possible to use PCR tests to do this in some cases 2. B.1.1.529 = has many mutations across different parts of the virus https://t.co/ytktqLzJUi [Tweet]. @miamalan. https://twitter.com/miamalan/status/1463846528578109444
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www.bbc.co.uk www.bbc.co.uk
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Coronavirus variant fear sparks Africa travel curbs. (2021, November 26). BBC News. https://www.bbc.com/news/uk-59424269
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ReconfigBehSci. (2022, January 1). RT @wanderer_jasnah: Quick glance at B.1.640.2 before anyone asks me about it: It’s basically B.1.1.7 w/a large Spike NTD deletion. I see… [Tweet]. @SciBeh. https://twitter.com/SciBeh/status/1478289563776962563
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ReconfigBehSci on Twitter: ‘it seems just yesterday that Twitter was ablaze with “nobody has died of omicron”’ / Twitter. (n.d.). Retrieved 29 March 2022, from https://twitter.com/SciBeh/status/1478483795863089154
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ReconfigBehSci. (2022, January 5). RT @thehowie: "...Rapid antigen tests may not be as fit-for-purpose in routine workplace screening to prevent asymptomatic spread of Omicro… [Tweet]. @SciBeh. https://twitter.com/SciBeh/status/1478796550004486151
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www.timesofisrael.com www.timesofisrael.com
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Israel said delaying rollout of 4th COVID shots amid signs Omicron less severe | The Times of Israel. (n.d.). Retrieved 29 March 2022, from https://www.timesofisrael.com/israel-said-to-delay-rollout-of-4th-covid-shots-amid-signs-omicron-less-severe/amp/
Tags
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Annotators
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twitter.com twitter.com
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Jens von Bergmann. (2021, December 14). Every time a new variant with a selective advantage is making the rounds, but especially this time. Https://t.co/fDEq54nHCl [Tweet]. @vb_jens. https://twitter.com/vb_jens/status/1470604121640030214
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ReconfigBehSci. (2021, December 5). RT @AnnaAlbecka: I guess Omicron is not going anywhere with already >5% of sequences in Belgium and Netherlands #Omicron https://t.co/b2Xs7… [Tweet]. @SciBeh. https://twitter.com/SciBeh/status/1467821013941510145
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name. (n.d.). På trods af historisk høje smittetal følger indlæggelserne ikke med. Retrieved 28 March 2022, from https://www.ssi.dk/aktuelt/nyheder/2022/paa-trods-af-hoeje-smittetal-foelger-indlaeggelserne-ikke-med
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hackmd.io hackmd.io
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Myths about COVID-19 vaccination. (n.d.). HackMD. Retrieved March 23, 2022, from https://hackmd.io/@scibehC19vax/misinfo_myths
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Altmann, D. M., & Boyton, R. J. (2022). COVID-19 vaccination: The road ahead. Science, 375(6585), 1127–1132. https://doi.org/10.1126/science.abn1755
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ReconfigBehSci on Twitter: ‘RT @amymaxmen: Link to the meeting: Https://t.co/3UH1R8fblN’ / Twitter. (n.d.). Retrieved 22 March 2022, from https://twitter.com/SciBeh/status/1486268859741052930
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Corbevax: All About India’s First Protein Sub-Unit Covid Vaccine to be Given to 12-14 Age Group From Today. (2022, March 16). News18. https://www.news18.com/news/india/corbevax-all-about-indias-first-protein-sub-unit-covid-vaccine-to-be-given-to-12-14-age-group-from-today-4874345.html
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newrepublic.com newrepublic.com
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Bacharach, J., Schreiber, M., Schreiber, M., Schreiber, M., Schreiber, M., Adler-Bell, S., Adler-Bell, S., Beacock, I., Beacock, I., Rosenfeld, S., Rosenfeld, S., Subramanian, S., & Subramanian, S. (2022, March 15). Why Is David Leonhardt So Happy? The New Republic. https://newrepublic.com/article/165729/david-leonhardt-happy-review-new-york-times-morning-newsletter
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Mar 03, M. V. B. | N. W. | C. N. | & 2022. (n.d.). Third vaccine dose boosts Omicron protection, with some waning. CIDRAP. Retrieved 7 March 2022, from https://www.cidrap.umn.edu/news-perspective/2022/03/third-vaccine-dose-boosts-omicron-protection-some-waning
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- Feb 2022
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twitter.com twitter.com
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Marc Stegger. (2022, February 22). New preprint on #COVID19 is out: “Occurrence and significance of Omicron BA.1 infection followed by BA.2 reinfection”. Using the national surveillance system in Denmark, we show that reinfections with #SARSCoV2 VOC #Omicron BA.2 can occur after recent BA.1 infection #SSI_dk https://t.co/Cm0n8vga4P [Tweet]. @MarcStegger. https://twitter.com/MarcStegger/status/1496099303143653379
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pubmed.ncbi.nlm.nih.gov pubmed.ncbi.nlm.nih.gov
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Kok, K.-H., Wong, S.-C., Chan, W.-M., Lei, W., Chu, A. W.-H., Ip, J. D., Lee, L.-K., Wong, I. T.-F., Lo, H. W.-H., Cheng, V. C.-C., Ho, A. Y.-M., Lam, B. H.-S., Tse, H., Lung, D., Ng, K. H.-L., Au, A. K.-W., Siu, G. K.-H., & Yuen, K.-Y. (2022). Cocirculation of two SARS-CoV-2 variant strains within imported pet hamsters in Hong Kong. Emerging Microbes & Infections, 1–39. https://doi.org/10.1080/22221751.2022.2040922
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www.medrxiv.org www.medrxiv.org
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Stegger, M., Edslev, S. M., Sieber, R. N., Ingham, A. C., Ng, K. L., Tang, M.-H. E., Alexandersen, S., Fonager, J., Legarth, R., Utko, M., Wilkowski, B., Gunalan, V., Bennedbæk, M., Byberg-Grauholm, J., Møller, C. H., Christiansen, L. E., Svarrer, C. W., Ellegaard, K., Baig, S., … Rasmussen, M. (2022). Occurrence and significance of Omicron BA.1 infection followed by BA.2 reinfection (p. 2022.02.19.22271112). medRxiv. https://doi.org/10.1101/2022.02.19.22271112
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www.nature.com www.nature.com
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Tseng, H. F., Ackerson, B. K., Luo, Y., Sy, L. S., Talarico, C. A., Tian, Y., Bruxvoort, K. J., Tubert, J. E., Florea, A., Ku, J. H., Lee, G. S., Choi, S. K., Takhar, H. S., Aragones, M., & Qian, L. (2022). Effectiveness of mRNA-1273 against SARS-CoV-2 Omicron and Delta variants. Nature Medicine, 1–1. https://doi.org/10.1038/s41591-022-01753-y
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twitter.com twitter.com
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Cornelius Roemer. (2022, February 12). Fantastic work by @UKHSA comparing serial intervals of BA.1, BA.2 and Delta as published in the most recent technical briefing. BA.2 seems to have even shorter serial interval than BA.1 This could help explain different relative growth rates of BA.2 vs BA.1 in different countries https://t.co/Gch94Ew8CX [Tweet]. @CorneliusRoemer. https://twitter.com/CorneliusRoemer/status/1492434232664375304
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www.nejm.org www.nejm.org
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Altarawneh, H. N., Chemaitelly, H., Hasan, M. R., Ayoub, H. H., Qassim, S., AlMukdad, S., Coyle, P., Yassine, H. M., Al-Khatib, H. A., Benslimane, F. M., Al-Kanaani, Z., Al-Kuwari, E., Jeremijenko, A., Kaleeckal, A. H., Latif, A. N., Shaik, R. M., Abdul-Rahim, H. F., Nasrallah, G. K., Al-Kuwari, M. G., … Abu-Raddad, L. J. (2022). Protection against the Omicron Variant from Previous SARS-CoV-2 Infection. New England Journal of Medicine, 0(0), null. https://doi.org/10.1056/NEJMc2200133
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Dr. Peter Hotez: Omicron is like a fast-moving freight train. (n.d.). MSN. Retrieved February 20, 2022, from https://www.msn.com/en-us/news/us/dr-peter-hotez-omicron-is-like-a-fast-moving-freight-train/vi-AARPfVG
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www.nationalgeographic.com www.nationalgeographic.com
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Mckeever, A. (n.d.). COVID-19 variants will keep coming until everyone can access vaccines. Retrieved February 20, 2022, from https://www.nationalgeographic.com/science/article/covid-19-variants-will-keep-coming-until-everyone-can-access-vaccines
Tags
- COVID-19
- low-income country
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Annotators
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twitter.com twitter.com
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Eric Feigl-Ding. (2022, January 13). WATCH📺—Despite 97.5% of all adults in England🏴 with antibodies to #COVID19 (via vax/infection)–hospitalizations still surging. Why? Because variants like #Omicron are adapting. Need multivalent vax, plus ➡️N95 & ventilation are agnostic to variants—Key! Https://t.co/gDNRJIWojX [Tweet]. @DrEricDing. https://twitter.com/DrEricDing/status/1481732793482813443
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twitter.com twitter.com
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Ali Ellebedy. (2021, December 30). We need those who are adept at #SciComm to explain that “Omicron” is sufficiently different from the original strain that was used to make the vaccine. Therefore, the definition of “fully vaccinated” will have to be updated, but that does not mean that the vaccines have failed. [Tweet]. @TheBcellArtist. https://twitter.com/TheBcellArtist/status/1476649138691444740
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www.mercurynews.com www.mercurynews.com
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Living with COVID-19: How the virus could turn into the common cold, or something far worse. (2022, January 9). The Mercury News. https://www.mercurynews.com/2022/01/09/living-with-covid-19-how-the-virus-could-turn-into-the-common-cold-or-something-far-worse
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assets.publishing.service.gov.uk assets.publishing.service.gov.uk
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Academics: Viral Evolution Scenarios, 10 February 2022. (n.d.). GOV.UK. Retrieved February 14, 2022, from https://www.gov.uk/government/publications/academics-viral-evolution-scenarios-10-february-2022
Tags
- COVID-19
- is:report
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- scenario
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Annotators
URL
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twitter.com twitter.com
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Fionna O’Leary, 🕯🇪🇺. (2022, January 18). All that herd immunity …. Covid 3 times. Balloux https://t.co/OfwRvgakK9 [Tweet]. @fascinatorfun. https://twitter.com/fascinatorfun/status/1483260151620644864
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twitter.com twitter.com
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ReconfigBehSci on Twitter: ‘RT @HelenBranswell: The latest “Nowcast” from @CDCgov suggests Omicron has pretty much swept the table. Https://t.co/BAwPhsyPwW https://t.…’ / Twitter. (n.d.). Retrieved 13 February 2022, from https://twitter.com/SciBeh/status/1483495777376903175
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twitter.com twitter.com
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ReconfigBehSci on Twitter: ‘surprising how the logic of argument around C19 has not updated to the fact that reinfection is a big thing, as are new variants. Delay = a round of infection you never got...’ / Twitter. (n.d.). Retrieved 13 February 2022, from https://twitter.com/SciBeh/status/1483716840316706824
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twitter.com twitter.com
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Anthony J Leonardi, PhD, MS. (2022, January 22). Wow. This is concerning. H/t @ForesightWisdom it is learning to become more chronic. Https://t.co/XwFR4D0kiy [Tweet]. @fitterhappierAJ. https://twitter.com/fitterhappierAJ/status/1484996537889476610
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twitter.com twitter.com
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World Health Organization (WHO) on Twitter. (n.d.). Twitter. Retrieved 13 February 2022, from https://twitter.com/WHO/status/1485554889900142599
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Grubaugh, N. D., Hodcroft, E. B., Fauver, J. R., Phelan, A. L., & Cevik, M. (2021). Public health actions to control new SARS-CoV-2 variants. Cell, 184(5), 1127–1132. https://doi.org/10.1016/j.cell.2021.01.044
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www.youtube.com www.youtube.com
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American Medical Association (AMA). (2021, December 6). Peter Hotez, MD, PhD, on the omicron variant and Delta winter surge | COVID-19 Update for Dec. 6, 20. https://www.youtube.com/watch?v=WnfpC1_N2Mg
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blogs.bmj.com blogs.bmj.com
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Pak, C. (2022, February 8). Endemic Fatalism and Why It Won’t Resolve COVID-19. Medical Humanities. https://blogs.bmj.com/medical-humanities/?p=3280
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twitter.com twitter.com
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Tulio de Oliveira. (2022, February 9). As expected, Omicron BA.2 takes over in South Africa, close to 100% of the new genomes. What does it mean? Https://t.co/SAb9mGYSjN [Tweet]. @Tuliodna. https://twitter.com/Tuliodna/status/1491483399265075202
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www.thelancet.com www.thelancet.com
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Wong, S.-C., Au, A. K.-W., Chen, H., Yuen, L. L.-H., Li, X., Lung, D. C., Chu, A. W.-H., Ip, J. D., Chan, W.-M., Tsoi, H.-W., To, K. K.-W., Yuen, K.-Y., & Cheng, V. C.-C. (2022). Transmission of Omicron (B.1.1.529) - SARS-CoV-2 Variant of Concern in a designated quarantine hotel for travelers: A challenge of elimination strategy of COVID-19. The Lancet Regional Health – Western Pacific, 18. https://doi.org/10.1016/j.lanwpc.2021.100360
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twitter.com twitter.com
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PaedsHaemDoc. (2022, January 9). Had the misfortune (via @fatemperor) to come across Dr Paul Alexander -apparently credentialed yet in single blog post demonstrates perfectly either a disconnect from rational thought or deliberate misinformation spreading of the #masspsychosis of the anti-Vax crew let’s examine https://t.co/Ctd49cb1qK [Tweet]. @dr_barrett. https://twitter.com/dr_barrett/status/1479986071832248322
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Jorge A. Caballero, MD (jorgecaballero.eth). (2022, January 10). 🧵/ I just spoke with two journalists about data that shows how the U.S. healthcare system is collapsing before our eyes. The million dollar question during both interviews was, “What else could we be doing right now?” The answer: Flatten the hospitalization curve. Now. [Tweet]. @DataDrivenMD. https://twitter.com/DataDrivenMD/status/1480607009867132928
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twitter.com twitter.com
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Yaneer Bar-Yam on Twitter. (n.d.). Twitter. Retrieved February 7, 2022, from https://twitter.com/yaneerbaryam/status/1474091037861761026
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twitter.com twitter.com
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Ulrich Elling. (2022, January 12). While #Omicron BA.1 leads the race, the little sister BA.2 is catching up in numbers. They are rather different with likely functional implications. BA.2 might be more immune evasive in RBD, less in NTD. And due to reduced mutation load in NTD maybe different fusion properties? Https://t.co/kEACjzQDs3 [Tweet]. @EllingUlrich. https://twitter.com/EllingUlrich/status/1481214901997682692
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twitter.com twitter.com
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Mike Honey 💉💉💉. (2022, January 27). Here’s the latest variant picture for Australia. BA.1 (Omicron) is still very dominant. The new sub-lineage BA.1.1 (with the Spike R346K mutation) is significant, but not growing rapidly. Https://t.co/LsOCkUQhai [Tweet]. @Mike_Honey_. https://twitter.com/Mike_Honey_/status/1486654152939765766
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Barnes, O., & Alabi, L. O. (2022, January 27). UK coronavirus cases tick up 10%, symptom tracker app shows. Financial Times. https://www.ft.com/content/f9833324-7986-48c4-a96c-153049ed9b5a
Tags
- COVID-19
- England
- mask wearing
- loosening restrictions
- Denmark
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Annotators
URL
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twitter.com twitter.com
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Jonathan Li on Twitter: “There’s a lineage of Omicron that’s gained the R346K mutation (BA.1.1). This one could spell some trouble for the AZ mAb (tixagevimab/cilgavimab, Evusheld) that’s being used for pre-exposure prophylaxis. If you want to learn about tix/cil vs Omicron, read on 1/7” / Twitter. (n.d.). Retrieved February 6, 2022, from https://twitter.com/DrJLi/status/1487479972293853188
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twitter.com twitter.com
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Prof. Christina Pagel. (2022, January 31). Update on growth of Omicron subvariant BA.2 in England from Wellcome Sanger data. Growing in all regions. The main Omicron variant we’ve had so far is BA.1. There is then its child BA.1.1 with an extra mutation and its brother BA.2 which is pretty different to BA.1. 1/2 https://t.co/iVxrf01P4o [Tweet]. @chrischirp. https://twitter.com/chrischirp/status/1488127760291799041
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www.nature.com www.nature.com
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Mallapaty, Smriti. ‘Where Did Omicron Come from? Three Key Theories’. Nature 602, no. 7895 (28 January 2022): 26–28. https://doi.org/10.1038/d41586-022-00215-2.
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www.theguardian.com www.theguardian.com
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Berger, Eric. ‘As Omicron Peaks, the US Healthcare System Is Left “Broken beyond Repair”’. The Guardian, 4 February 2022, sec. Society. https://www.theguardian.com/society/2022/feb/03/us-coronavirus-healthcare-system-providers.
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www.statnews.com www.statnews.com
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Omicron’s sister variant spreads faster. So why did the one we call Omicron hit first? (2022, February 2). STAT. https://www.statnews.com/2022/02/02/omicron-sister-variant-ba2-spreads-faster/
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www.nature.com www.nature.com
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Hall, V. G., Ferreira, V. H., Wood, H., Ierullo, M., Majchrzak-Kita, B., Manguiat, K., Robinson, A., Kulasingam, V., Humar, A., & Kumar, D. (2022). Delayed-interval BNT162b2 mRNA COVID-19 vaccination enhances humoral immunity and induces robust T cell responses. Nature Immunology, 1–6. https://doi.org/10.1038/s41590-021-01126-6
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news.sky.com news.sky.com
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COVID: Reinfection risk from Omicron 16 times higher than Delta, ONS data indicates. (n.d.). Sky News. Retrieved February 4, 2022, from https://news.sky.com/story/reinfection-risk-from-omicron-16-times-higher-than-delta-ons-data-indicates-12519881
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twitter.com twitter.com
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Ashish K. Jha, MD, MPH on Twitter. (n.d.). Twitter. Retrieved February 2, 2022, from https://twitter.com/ashishkjha/status/1487868684412628996
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twitter.com twitter.com
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Prof. Christina Pagel. (2022, January 26). here is BA.2 growth in Denmark. Https://t.co/stake8vHvq [Tweet]. @chrischirp. https://twitter.com/chrischirp/status/1486300603735330816
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www.nature.com www.nature.com
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Adam, D. (2022). Will Omicron end the pandemic? Here’s what experts say. Nature, 602(7895), 20–21. https://doi.org/10.1038/d41586-022-00210-7
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Tayag, Y. (2022, January 31). What causes long Covid? Scientists are zeroing in on the answer. Vox. https://www.vox.com/22906853/omicron-long-covid-vaccinated-symptoms-cause
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- Jan 2022
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www.deseret.com www.deseret.com
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Scribner, H. (2022, January 29). A new COVID-19 variant surge ‘will happen again,’ experts say. Deseret News. https://www.deseret.com/coronavirus/2022/1/29/22904290/new-covid-19-variant-surge-next-major-coronavirus-mutation
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twitter.com twitter.com
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Tom Wenseleers. (2022, January 30). Seems that the second Omicron subvariant BA.2 may soon be about to cause cases to start rising again in South Africa... Or at least to stop the decline in new infections. Shows how fast immunity wanes & evolution can catch up. Https://t.co/3y4xqPgZ0L [Tweet]. @TWenseleers. https://twitter.com/TWenseleers/status/1487919837670219781
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www.nejm.org www.nejm.org
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Pajon, R., Doria-Rose, N. A., Shen, X., Schmidt, S. D., O’Dell, S., McDanal, C., Feng, W., Tong, J., Eaton, A., Maglinao, M., Tang, H., Manning, K. E., Edara, V.-V., Lai, L., Ellis, M., Moore, K. M., Floyd, K., Foster, S. L., Posavad, C. M., … Montefiori, D. C. (2022). SARS-CoV-2 Omicron Variant Neutralization after mRNA-1273 Booster Vaccination. New England Journal of Medicine, 0(0), null. https://doi.org/10.1056/NEJMc2119912
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www.statnews.com www.statnews.com
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Early data indicate vaccines still protect against Omicron’s sister variant, BA.2. (2022, January 28). STAT. https://www.statnews.com/2022/01/28/early-data-indicate-vaccines-still-protect-against-omicrons-sister-variant-ba-2/
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spiral.imperial.ac.uk spiral.imperial.ac.uk
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Elliott, P., Eales, O., Bodinier, B., Tang, D., Wang, H., Jonnerby, J., Haw, D., Elliott, J., Whitaker, M., Walters, C., Atchison, C., Diggle, P., Page, A., Trotter, A., Ashby, D., Barclay, W., Taylor, G., Ward, H., Darzi, A., … Donnelly, C. (2022). Post-peak dynamics of a national Omicron SARS-CoV-2 epidemic during January 2022 [Working Paper]. http://spiral.imperial.ac.uk/handle/10044/1/93887
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Kozlov, M. (2022). How does Omicron spread so fast? A high viral load isn’t the answer. Nature. https://doi.org/10.1038/d41586-022-00129-z
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“Endemic” Covid? The pandemic will only be over when the world is jabbed. (2022, January 15). Inews.Co.Uk. https://inews.co.uk/news/politics/endemic-covid-the-pandemic-will-only-be-over-when-the-world-is-jabbed-1402691
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healthpolicy-watch.news healthpolicy-watch.news
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Backed By Science: Here’s How We Can Eliminate COVID-19 - Health Policy Watch. (2022, January 23). https://healthpolicy-watch.news/93258-2/
Tags
- pandemic management
- natural infection
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Annotators
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twitter.com twitter.com
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Mrigank Shail, MD. (2022, January 11). Update on Omicron by Dr @mvankerkhove from @WHO’s Q&A https://t.co/NqCOvs59Tl [Tweet]. @mrigankshail. https://twitter.com/mrigankshail/status/1481006646826577925
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www.theguardian.com www.theguardian.com
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Davis, N., & correspondent, N. D. S. (2022, January 21). Covid reinfection: How likely are you to catch virus multiple times? The Guardian. https://www.theguardian.com/world/2022/jan/21/covid-reinfection-how-likely-are-you-to-catch-virus-multiple-times
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twitter.com twitter.com
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Tom Peacock. (2022, January 19). As its been getting increasing attention recently, I’m going to write a short thread on what we currently know about BA.2. -What is BA.2? -What is BA.2 doing currently? -Should we be concerned about it? [Tweet]. @PeacockFlu. https://twitter.com/PeacockFlu/status/1483768659420094464
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www.nbcnews.com www.nbcnews.com
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Edwards, E. (n.d.). Nearly 1 million pediatric Covid cases reported last week. Retrieved January 21, 2022, from https://www.nbcnews.com/health/health-news/nearly-1-million-pediatric-covid-cases-reported-last-week-rcna12631
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www.lifehacker.com.au www.lifehacker.com.au
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How Long Are You Actually Immune for After Recovering From COVID-19? (2022, January 19). Lifehacker Australia. https://www.lifehacker.com.au/2022/01/covid-19-immunity-explained/
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www.theguardian.com www.theguardian.com
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Halliday, J., & correspondent, J. H. N. of E. (2022, January 17). ‘Christmas was awful’: On the Omicron frontline at the Royal Preston hospital. The Guardian. https://www.theguardian.com/world/2022/jan/17/christmas-was-awful-on-the-omicron-frontline-at-the-royal-preston-hospital
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www.statnews.com www.statnews.com
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Scientists try to pinpoint why rapid Covid tests are missing some cases. (2022, January 6). STAT. https://www.statnews.com/2022/01/06/scientists-try-to-pinpoint-why-rapid-covid-tests-are-missing-cases/
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Kirby, J. (2021, December 23). Omicron collides with a struggling global vaccination campaign. Vox. https://www.vox.com/22846774/omicron-global-vaccines-covronavirus-covid-19
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www.med.hku.hk www.med.hku.hk
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HKUMed finds Omicron SARS-CoV-2 can infect faster and better than Delta in human bronchus but with less severe infection in lung. (n.d.). Retrieved January 16, 2022, from https://www.med.hku.hk/en/news/press/20211215-omicron-sars-cov-2-infection?utm_medium=social&utm_source=twitter&utm_campaign=press_release
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thedenmarkpost.com thedenmarkpost.com
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TheDenmarkPost. (2022, January 1). Corona In Denmark: Where Omikron’s Wall Is Already There | News Headlines Denmark | The Denmark Post. https://thedenmarkpost.com/corona-in-denmark-where-omikrons-wall-is-already-there-news-headlines-denmark/
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