2,501 Matching Annotations
  1. Jul 2021
    1. The easy way to manage scientific publications and bookmarks

      BibSonomy helps you to manage your publications and bookmarks, to collaborate with your colleagues and to find new interesting material for your research.

    1. In the future, we recommend that toasters be sold in six-packs to accomodate important SPT research.

      Definitely an important finding! :)

    1. Revisiting this essay to review it in the framing of digital gardens.

      In a "gardens and streams" version of this metaphor, the stream is flow and the garden is stock.

      This also fits into a knowledge capture, growth, and innovation framing. The stream are small atomic ideas flowing by which may create new atomic ideas. These then need to be collected (in a garden) where they can be nurtured and grow into new things.

      Clippings of these new growth can be placed back into the stream to move on to other gardeners. Clever gardeners will also occasionally browse through the gardens of others to see bigger picture versions of how their gardens might become.

      Proper commonplacing is about both stock and flow. The unwritten rule is that one needs to link together ideas and expand them in places either within the commonplace or external to it: essays, papers, articles, books, or other larger structures which then become stock for others.

      While some creators appear to be about all stock in the modern era, it's just not true. They're consuming streams (flow) from other (perhaps richer) sources (like articles, books, television rather than social media) and building up their own stock in more private (or at least not public) places. Then they release that article, book, film, television show which becomes content stream for others.

      While we can choose to create public streams, but spending our time in other less information dense steams is less useful. Better is to keep a reasonably curated stream to see which other gardens to go visit.

      Currently is the online media space we have structures like microblogs and blogs (and most social media in general) which are reasonably good at creating streams (flow) and blogs, static sites, and wikis which are good for creating gardens (stock).

      What we're missing is a structure with the appropriate and attendant UI that can help us create both a garden and a stream simultaneously. It would be nice to have a wiki with a steam-like feed out for the smaller attendant ideas, but still allow the evolutionary building of bigger structures, which could also be placed into the stream at occasional times.

      I can imagine something like a MediaWiki with UI for placing small note-like ideas into other streams like Twitter, but which supports Webmention so that ideas that come back from Twitter or other consumers of one's stream can be placed into one's garden. Perhaps in a Zettelkasten like way, one could collect atomic notes into their wiki and then transclude those ideas into larger paragraphs and essays within the same wiki on other pages which might then become articles, books, videos, audio, etc.

      Obsidian, Roam Research do a somewhat reasonable job on the private side and have some facility for collecting data, but have no UI for sharing out into streams.

    1. Dr. Jeff Benyacar on Twitter: “@AlexBerenson ‘Even if a link between myocarditis and the vaccine holds up, the condition is usually mild, requiring treatment only with anti-inflammatory drugs, whereas COVID-19 infection can also cause serious disease and long-term side effects, even in young people.’ https://t.co/3VQprF7bIz” / Twitter. (n.d.). Retrieved July 2, 2021, from https://twitter.com/jbenyacar/status/1399851524487106562?s=12

    1. Adam Kucharski on Twitter: “Useful data 👇– quick look suggests odds ratio for detection of B.1.617.2 relative to non-B.1.617.2 in vaccinated group compared to controls is 2.7 (95% CI: 0.7-10) after one dose and 1.2 (0.4-3.6) after two...” / Twitter. (n.d.). Retrieved July 2, 2021, from https://twitter.com/AdamJKucharski/status/1400443351908892675?s=20

    1. Setting Up Scope and Topic

      You need to establish boundaries with respect to what you want to learn, otherwise you'll keep going towards whatever catches your attention in the moment.

  2. Jun 2021
    1. Soderberg, C. K., Errington, T. M., Schiavone, S. R., Bottesini, J., Thorn, F. S., Vazire, S., Esterling, K. M., & Nosek, B. A. (2021). Initial evidence of research quality of registered reports compared with the standard publishing model. Nature Human Behaviour, 1–8. https://doi.org/10.1038/s41562-021-01142-4

    1. Borobia, A. M., Carcas, A. J., Pérez-Olmeda, M., Castaño, L., Bertran, M. J., García-Pérez, J., Campins, M., Portolés, A., González-Pérez, M., García Morales, M. T., Arana-Arri, E., Aldea, M., Díez-Fuertes, F., Fuentes, I., Ascaso, A., Lora, D., Imaz-Ayo, N., Barón-Mira, L. E., Agustí, A., … Torvisco, J. M. (2021). Immunogenicity and reactogenicity of BNT162b2 booster in ChAdOx1-S-primed participants (CombiVacS): A multicentre, open-label, randomised, controlled, phase 2 trial. The Lancet, S0140673621014203. https://doi.org/10.1016/S0140-6736(21)01420-3

  3. dash.eloquent.works dash.eloquent.works
    1. An interesting tool for taking notes from Jeremy Ho. Designed with Roam Research in mind.

      The Eloquent tool is available to install! Capture ideas in-context with:<br>• On-page highlighting<br>• Nested bullets<br>• /snippets<br>• [[braces]] and #tag syntax<br>Quick capture is a hotkey away. Bonus hotkey sends your highlights/links to @RoamResearch pic.twitter.com/vLLbPX4zwW

      — Jeremy Ho (@jeremyqho) July 21, 2020
      <script async src="https://platform.twitter.com/widgets.js" charset="utf-8"></script>

      I wish it could save data as a local text or markdown file so it would also be easier to use with Obsidian or other note taking tools. It's similar in nature to the Roam Highlighter extension.

      Details at https://www.notion.so/Eloquent-Resource-Center-72f95c2a71d34c5181e4907edf7a96e1

    1. Regev-Yochay, G., Amit, S., Bergwerk, M., Lipsitch, M., Leshem, E., Kahn, R., Lustig, Y., Cohen, C., Doolman, R., Ziv, A., Novikov, I., Rubin, C., Gimpelevich, I., Huppert, A., Rahav, G., Afek, A., & Kreiss, Y. (2021). Decreased Infectivity Following BNT162b2 Vaccination. SSRN Electronic Journal. https://doi.org/10.2139/ssrn.3815668

    1. Thompson, M. G., Burgess, J. L., Naleway, A. L., Tyner, H. L., Yoon, S. K., Meece, J., Olsho, L. E. W., Caban-Martinez, A. J., Fowlkes, A., Lutrick, K., Kuntz, J. L., Dunnigan, K., Odean, M. J., Hegmann, K. T., Stefanski, E., Edwards, L. J., Schaefer-Solle, N., Grant, L., Ellingson, K., … Gaglani, M. (2021). Interim Estimates of Vaccine Effectiveness of BNT162b2 and mRNA-1273 COVID-19 Vaccines in Preventing SARS-CoV-2 Infection Among Health Care Personnel, First Responders, and Other Essential and Frontline Workers—Eight U.S. Locations, December 2020–March 2021. MMWR. Morbidity and Mortality Weekly Report, 70(13), 495–500. https://doi.org/10.15585/mmwr.mm7013e3

    1. Parry, H. M., Tut, G., Faustini, S., Stephens, C., Saunders, P., Bentley, C., Hilyard, K., Brown, K., Amirthalingam, G., Charlton, S., Leung, S., Chiplin, E., Coombes, N. S., Bewley, K. R., Penn, E. J., Rowe, C., Otter, A., Watts, R., D’Arcangelo, S., … Moss, P. (2021). BNT162b2 Vaccination in People Over 80 Years of Age Induces Strong Humoral Immune Responses with Cross Neutralisation of P.1 Brazilian Variant. SSRN Electronic Journal. https://doi.org/10.2139/ssrn.3816840

  4. watermark.silverchair.com watermark.silverchair.com
    1. Qureshi, A. I., Baskett, W. I., Huang, W., Lobanova, I., Naqvi, S. H., & Shyu, C.-R. (2021). Re-infection with SARS-CoV-2 in Patients Undergoing Serial Laboratory Testing. Clinical Infectious Diseases, ciab345. https://doi.org/10.1093/cid/ciab345

  5. stoa.anagora.org stoa.anagora.org
    1. Some conventions may be emerging in a new batch of personal knowledge management tools, or amenable to them; for the duration of this document, we'll refer to these tools as [[personal knowledge management]] tools, [[roam like]] or (preferred as of the time of writing) [[wiki like]].

      It would be incredibly useful to have a list of these [[Roam Research like]] tools so that they can be documented as to what level of input they can/could take and remain compatible from text, to text+[[wiki links]], to the various flavors of markdown up to full HTML perhaps.

      I know a handful are documented at indieweb.org/commonplace_book

    1. V Shah, A. S., Gribben, C., Bishop, J., Hanlon, P., Caldwell, D., Wood, R., Reid, M., McMenamin, J., Goldberg, D., Stockton, D., Hutchinson, S., Robertson, C., McKeigue, P. M., Colhoun, H. M., & McAllister, D. A. (2021). Effect of vaccination on transmission of COVID-19: An observational study in healthcare workers and their households [Preprint]. Public and Global Health. https://doi.org/10.1101/2021.03.11.21253275

    1. Woolf, K., McManus, I. C., Martin, C. A., Nellums, L. B., Guyatt, A. L., Melbourne, C., Bryant, L., Gogoi, M., Wobi, F., Al-Oraibi, A., Hassan, O., Gupta, A., John, C., Tobin, M. D., Carr, S., Simpson, S., Gregary, B., Aujayeb, A., Zingwe, S., … Pareek, M. (2021). Ethnic differences in SARS-CoV-2 vaccine hesitancy in United Kingdom healthcare workers: Results from the UK-REACH prospective nationwide cohort study [Preprint]. Public and Global Health. https://doi.org/10.1101/2021.04.26.21255788

    1. Professor, interested in plagues, and politics. Re-locking my twitter acct when is 70% fully vaccinated.

      Example of a professor/research who has apparently made his Tweets public, but intends to re-lock them majority of threat is over.

    1. Osmanov, I. M., Spiridonova, E., Bobkova, P., Gamirova, A., Shikhaleva, A., Andreeva, M., Blyuss, O., El-Taravi, Y., DunnGalvin, A., Comberiati, P., Peroni, D. G., Apfelbacher, C., Genuneit, J., Mazankova, L., Miroshina, A., Chistyakova, E., Samitova, E., Borzakova, S., Bondarenko, E., … Sechenov StopCOVID Research Team. (2021). Risk factors for long covid in previously hospitalised children using the ISARIC Global follow-up protocol: A prospective cohort study [Preprint]. Pediatrics. https://doi.org/10.1101/2021.04.26.21256110

    1. Wall, E. C., Wu, M., Harvey, R., Kelly, G., Warchal, S., Sawyer, C., Daniels, R., Hobson, P., Hatipoglu, E., Ngai, Y., Hussain, S., Nicod, J., Goldstone, R., Ambrose, K., Hindmarsh, S., Beale, R., Riddell, A., Gamblin, S., Howell, M., … Bauer, D. L. (2021). Neutralising antibody activity against SARS-CoV-2 VOCs B.1.617.2 and B.1.351 by BNT162b2 vaccination. The Lancet, 0(0). https://doi.org/10.1016/S0140-6736(21)01290-3

    1. For bibliographic information on this strange memory image, see Bouchot (13).

      Other than filling some space and giving a bit of quirky context, did the text even mention this image? There should have been something.

      There was one later reference to parts of animals, but not specific to this image which could have been tied in better.

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  6. May 2021
    1. For users with Google Chrome, this can be paired with FelisCatus SwitchyOmega for great results.
    1. dataview plugin - check in on this for queries and MOC

      citations plugin - zotfile

      • cat's walkthrough shows all this stuff

      A somewhat useful overview, but skips some of the detailed specifics which we'll need to pull up elsewhere.

    1. A Zotero plugin to export item metadata and notes as markdown files

      Could be of potential use with respect to Obsidian.

  7. ota.bodleian.ox.ac.uk ota.bodleian.ox.ac.uk
    1. Oxford Text Archive A repository of full-text literary and linguistic resources. Thousands of texts in more than 25 languages.
    1. The limitations associated with the analysis of class-evaluation surveys in Study 2 largely result from the difficulty of extracting precise information from large groups of subjective ratings.

      Such a study might be more profitably done first at the undergraduate level in a pre-med course and then followed up 1-3 years later at the graduate medicine level. In particular, there are many universities that are pre-admitting undergraduates to their graduate programs where these studies, though still possibly small, could be done with reasonable controls and better retention to cover the time differential cases. This is especially the case since many of these biological processes like the TCA cycle, etc are repeated at both levels of education.

    2. the utility of either the Western "memory palace" technique or the Australian Aboriginal narrative method likely requires sustained practice and repeated exposure to the target material for long-term retention (i.e. weeks to months)

      This also shouldn't have been in question. There's a reasonably large body of practical experience of the effects of spaced repetition from indigenous cultures, not to mention psychology research from Hermann Ebbinghaus onwards.

    3. here was a noticeable decrease in recall performance among the students trained in the Australian Aboriginal method after 6 weeks, with the participants in that group indistinguishable from the untrained recall group. However, this observation should be treated with caution, as the sample was too small for accurate quantification of performance.

      This is a bit surprising, though the (N=3) numbers were so small.

      It also makes me wonder if the Aboriginal method training included a spaced repetition component of any sort as traditionally it likely would, though it's highly likely that novices memorizing a random list of butterflies wouldn't have reviewed over their performance a week, a month, or other intervals later.

    4. Participation in the six week follow-up was markedly reduced, with a total of 8 participants (N = 3 memory palace; 3 Australian Aboriginal method; 2 untrained recall).

      Why was the number on the follow up so markedly small? Did they do it during mid-terms or finals? A small, contained group like this should have been easy to reach.

    5. It is worth noting that no instructions were provided to the participants with respect to sequence, yet this measure exhibited the largest effect size of any of the parameters measured

      They should have mentioned this before. Not knowing what the function does, I'm curious to see how abysmal the sequence numbers were for the control group.

    6. Both methods of loci improved upon the already high level of recall among medical students relative to those who received no memory training.

      I'm saddened to see the erasure of the Australian Aboriginal approach (possibly better termed Songlines or Dreaming for specificity) here only to have it lumped into the Western method. This is worse when their general results show the Australian approach to be significantly better.

      This may be due to over-familiarity with the techniques which are broadly similar, but for rigor and respect they should remain separate in this paper.

    7. Thematic analysis was used to explore the qualitative data captured in the online survey. [22,23] describe thematic analysis as a method that seeks to find patterns, or categories, that emerge from the data, enabling the researcher to organise and provide detailed description.

      This seems like an interesting area to look into further.

      Two cited sources here:

    8. All statistical comparisons were therefore performed using non-parametric methods, to avoid introducing errors based on assumptions of normality in the data. Repeated measures comparisons were performed using the Friedman test, except where specified, with post-hoc pairwise comparisons made using the Friedman-Nemenyi test. Although no direct measure of effect size for the Friedman test is generally recognized, an indirect measure of effect size was obtained using the Kendall’s W-statistic (KW), computed from the Friedman Q value [19,20]. Effect sizes were interpreted as follows: weak: KW< 0.19; moderate 0.20< KW< 0.39; strong 0.4< KW.

      Delve into these techniques.

    9. The numbers of correctly recalled items were not normally distributed, due to a ceiling effect. This was likely attributable to the fact that the incoming medical student population were pre-selected as high academic achievers, and many may have already had personal systems for memorising information.

      Nice that they note this potential effect and skewing of the data.

    10. Participants were instructed to associate items to be remembered with specific objects and locations in the imagined space, with as much detail as possible (e.g. a red lamp with an adjustable shade and a power switch in the center of the lamp base sitting on a desk to the left hand side of the entrance to the room. As items were added to the memory list, each new item was associated with an object and position in the imagined room. To recall items, participants were instructed to imagine themselves walking into the room, approaching each object and location which had a list item associated with it, and to attempt to recall the list item in conjunction with the imagined object.

      No instruction about the five senses, exaggeration, hyperbole, etc?

      Given how much I see missing here in the Western method which I'm more versed, I wonder what I'm missing with the Australian method which I'm well aware of, but not as versed?

    11. Following the 20-minute rest, a final recall test was performed, this time without the opportunity for students to review the list prior to recall testing.

      It would be highly useful to do another test at a larger interval, say a week or a month later as well, both with and without the suggestion of spaced repetition with all three groups.

    12. After 10 minutes, the word lists were collected and students were asked to write down as many of the list items as they could recall within five minutes.

      Were students asked or told if they'd be tested with this on long-term memory?

      Personally, I'd have used a simple major system method to memorize such a list for short term memory, but would have used other techniques for long term memory.

    13. They were also instructed not to mark or write on the word list, and not to use their mobile phones or any other electronic devices or aids to assist in the activity.

      Doing this specifically prevents the non-mnemotechniques group from adding their own visual loci in the form of annotations, drolleries, etc.

    14. Group 1 participants received particular instruction in Western memory techniques. Group 2 students received instruction in the Australian Aboriginal technique.

      What was the instruction? How long did it last? Was it reviewed at a later interval?

    15. Each student was assigned randomly to one of three study groups and assigned an individual study ID number.

      Were students queried as to their knowledge or experience with any of the techniques prior to the study?

    1. As someone who knows both methods and has likely practiced them in reasonable depth, I'm curious what Dr. @LynneKelly thinks. I'd love to see this same study done to include song, dance, painting, etc. to expand the potential effects.

      If nothing else, it's good to see some positive research on the methods which will hopefully draw more attention to the pedagogy and classroom use.

      Dr. Reser said the Monash School of Rural Health is considering incorporating these memory tools into the medical curriculum once teaching returns to a post-COVID normal. “This year we hope to offer this to students as a way to not only facilitate their learning but to reduce the stress associated with a course that requires a lot of rote learning,” he said. —https://scitechdaily.com/ancient-australian-aboriginal-memory-tool-superior-to-memory-palace-learning-technique/

    1. Jonathan Rothberg 🦋. (2021, March 2). Testing works. I test daily. Insist on HOME testing. @michaelmina_lab @JoeBiden Research suggests B.1.526 needs to be closely watched “for its ability to evade both monoclonal antibody and, to a certain extent, the vaccine-induced antibody,” said Fauci [Tweet]. @JMRothberg. https://twitter.com/JMRothberg/status/1366755339912306688

    1. Dron, L., Taljaard, M., Cheung, Y. B., Grais, R., Ford, N., Thorlund, K., Jahan, F., Nakimuli-Mpungu, E., Xavier, D., Bhutta, Z. A., Park, J. J. H., & Mills, E. J. (2021). The role and challenges of cluster randomised trials for global health. The Lancet Global Health, 9(5), e701–e710. https://doi.org/10.1016/S2214-109X(20)30541-6

    1. Park, J. J. H., Grais, R. F., Taljaard, M., Nakimuli-Mpungu, E., Jehan, F., Nachega, J. B., Ford, N., Xavier, D., Kengne, A. P., Ashorn, P., Socias, M. E., Bhutta, Z. A., & Mills, E. J. (2021). Urgently seeking efficiency and sustainability of clinical trials in global health. The Lancet Global Health, 9(5), e681–e690. https://doi.org/10.1016/S2214-109X(20)30539-8

  8. Apr 2021
    1. As I was gearing up to start my PhD last fall, I received a piece of advice that made a lot of sense at the time, and continues to do so. My colleague, Inba told me to 'write while I read', meaning that I should take notes and summarize research while I read it, and not just read and underline article after article. That way, not only do I not lose my thoughts while I'm reading an article, but I am actively thinking through the arguments in the paper while I am reading it and my writing is thoroughly grounded in the literature.

      This is generally fantastic advice! It's also the general underpinning behind the idea of Luhmann's zettelkasten method.

      I'll also mention that it's not too dissimilar to Benjamin Franklin's writing advice about taking what others have written and working with that yourself, though there he doesn't take it as far as others have since.

    1. An interesting outline of how Colin Madland uses Notion for his Ph.D. research work.

      He's got a good list of some pros and cons at the bottom. The export sounds a bit hairy on one front, but at least gives you some sort of back up in case the worst were to happen.

      Not sure it's the thing for me and I'm happier with my workflow using Obsidian at the moment, though some of the ideas about process here could be helpful.

      It looks like he's got some of the same issues in using Grav for his knowledge work as I do in WordPress, though the taxonomy and Webmention portions do tend to help me a bit.

      Colin brought this to my attention at the OERxDomains21 conference.

    1. 1). The core principle, or underlying premise, is that students at all levels of the curriculum can benefit in multiple ways by engaging actively in research and enquiry.
    1. Experts in Business to Business Market Research

      B2B research agency, FOTP Research is known for Business to Business bespoke market research with expertise in gathering feedback from key stakeholder groups, and in particular Customers, Employees and Suppliers.

    1. Future studies should be conducted to test if the decreased cortical brain activity after nimodipine is associated with improved working memory performance in patients with schizophrenia, particularly those who carry the risk-associated genotype.

      Interesting hypothesis.

    1. Dr Ellie Murray [@EpiEllie] (2020) I saw a tweet about how there isn’t enough discussion of what experts got wrong on COVID, so here’s a thread of things I got wrong. Tweet. Retrieved from: https://twitter.com/epiellie/status/1378016842174898185

    1. Robson, S. G., Baum, M. A., Beaudry, J. L., Beitner, J., Brohmer, H., Chin, J., Jasko, K., Kouros, C., Laukkonen, R., Moreau, D., Searston, R. A., Slagter, H. A., Steffens, N. K., & Tangen, J. M. (2021). Nudging Open Science. PsyArXiv. https://doi.org/10.31234/osf.io/zn7vt

  9. Mar 2021