3,386 Matching Annotations
  1. Nov 2021
    1. Stephen Reicher. (2021, November 26). 55.1% of the worlds population has had one dose of Covid vaccine. 29% in South Africa 10.1% in Africa as a whole Only 6% of Africans are fully vaccinated So is it any surprise new variants are arising from Africa? What doesn’t go around (as vaccine) Comes around (as Covid). Https://t.co/0X0vZ6flmc [Tweet]. @ReicherStephen. https://twitter.com/ReicherStephen/status/1464202267196858380

    1. This tutorial uses a weather time series dataset recorded by the Max Planck Institute for Biogeochemistry.
    1. Prof. Christina Pagel. (2021, November 24). Meanwhile AY.4.2 (Delta grandchild) continues its very slow path to English dominance. Makes life a bit harder by being a bit more transmissible but luckily doesn’t seem any worse than Delta in any other respect. Https://t.co/kB0V0Z66GT [Tweet]. @chrischirp. https://twitter.com/chrischirp/status/1463508172941967365

    1. Collecting and disseminating progress

      "collecting and diseminating progress..." dapat diterjemahkan dengan menggunakan perangkat yang telah ada (misal: repositori kampus dan Repositori Ilmiah Nasional) dengan memenuhi prinsip F.A.I.R (Findable, Accessible, Interoperable, and Resuable).

    1. "The Guide to Social Science Data Preparation and Archiving is aimed at those engaged in the cycle of research, from applying for a research grant, through the data collection phase, and ultimately to preparation of the data for deposit in a public archive: " from tweet

    1. My UIs are data/store driven. The UI is just a way to visualize the data. Your data could flow through all of of the extensions and the extensions can make decisions (e.g. setting visible to false). Like middlewares in a Connect/Express/Polka app. And the UI doesn't even know about all this, it just updates with the current state and makes sure it's consistent.
    1. Personally, I prefer an event-based communication, but I don't think it's actually better. The only problem with props is that it can cause problems if badly managed, but normally, both of them are ok. In real life, I would opt for storage.
    1. $('#example').DataTable({ headerCallback: function headerCallback(thead, data, start, end, display) { $(thead) .find('th') .first() .html('Displaying ' + (end - start) + ' records'); } }); Note that the first parameter might actually be the first tr inside the thead, not necessarily the thead element itself, contrary to what is stated in the DataTables documentation. In complex scenarios with multiple header rows (trs), you might need to select like this: $('#example').DataTable({ headerCallback: function headerCallback(thead, data, start, end, display) { $(thead) .closest('thead') .find('th') .first() .html('Displaying ' + (end - start) + ' records'); } });

      Personalizzare le celle th di una DataTable

    1. COVID-19 Living Evidence. (2021, November 12). As of 12.11.2021, we have indexed 257,633 publications: 18,674 pre-prints 238,959 peer-reviewed publications Pre-prints: BioRxiv, MedRxiv Peer-reviewed: PubMed, EMBASE, PsycINFO https://t.co/ytOhLG90Pi [Tweet]. @evidencelive. https://twitter.com/evidencelive/status/1459163720450519042

    1. Jeffrey Barrett. (2021, October 19). Proportion of AY.4.2 (now on http://covid19.sanger.ac.uk) has been steadily increasing in England, which is a pattern that is quite different from other AY lineages. Several of them rose when there was still Alpha to displace, but none has had a consistent advantage vs other Delta. Https://t.co/mD5gQzKxgV [Tweet]. @jcbarret. https://twitter.com/jcbarret/status/1450408485829718039

    1. It partitions optimizer state, gradients and parameters across multiple data parallel processes via a dynamic communication schedule to minimize the communication volume.

      ZeRO-DP 的原理是什么?

    1. I find some of XDG's default dirs, especially ~/.local/share/whatever, to be very annoying. (Almost as annoying as having ~/snap polluting my home dir, but for a different reason.) I shouldn't have to type such long paths or navigate three folders deep in order to access my data files. I therefore make use of the XDG_DATA_HOME environment variable for XDG-style programs, so they will put my files somewhere convenient. However, I don't think Snap can honor that variable, because AppArmor rules require fixed paths. Given 1 & 2, I think ~/.snap/data is a sensible compromise, at least until the underlying components are flexible enough to let the user choose.
    1. If you would like to use Google's cloud to store and sync your Chrome data but you don't want Google to access the data, you can encrypt your synced Chrome data with your own sync passphrase.
    1. South-eastern Europe has followed a similar pattern. November and December 2020 were particularly lethal, with Bulgaria recording the highest weekly excess-mortality rates of any country in our tracker.

      Post summer-2021 unattributed excess deaths have started rising sharply in Greece.

    2. The table below shows that, in most places, the number of excess deaths (compared with our baseline) is greater than the number of covid-19 fatalities officially recorded by the government.

      India is not included in this super-usefull Excess Mortality table.

  2. Oct 2021
    1. Gil Feldman. (2021, October 26). @EricTopol Updated data from Israel. The booster works, without any doubt! Red (empty battery): Un-vax Light green (half battery): 2nd dose without the booster Green (full battery): With the booster https://t.co/HbZBvDMQs6 [Tweet]. @feldman_gil. https://twitter.com/feldman_gil/status/1452845319251767299

    1. Hulme, W. J., Williamson, E. J., Green, A., Bhaskaran, K., McDonald, H. I., Rentsch, C. T., Schultze, A., Tazare, J., Curtis, H. J., Walker, A. J., Tomlinson, L., Palmer, T., Horne, E., MacKenna, B., Morton, C. E., Mehrkar, A., Fisher, L., Bacon, S., Evans, D., … Goldacre, B. (2021). Comparative effectiveness of ChAdOx1 versus BNT162b2 COVID-19 vaccines in Health and Social Care workers in England: A cohort study using OpenSAFELY [Preprint]. Epidemiology. https://doi.org/10.1101/2021.10.13.21264937

    1. John Roberts on Twitter: “154k booster 💉reported today in 🏴󠁧󠁢󠁥󠁮󠁧󠁿, bringing the total to 1.58m, out of 4.56m. So that’s another 3m eligible for a jab as soon as they can be scheduled in. 1/ https://t.co/tw1JmrOiUo” / Twitter. (n.d.). Retrieved October 15, 2021, from https://twitter.com/john_actuary/status/1445785517774176262

    1. he person describing his or her “life world” dis- covers new relationships and patterns during the interview; the researcher who occasionally “summarizes” or “re- flects” what has been heard is, in fact, condensing and interpreting the flow of meaning.

      as interview progresses, the informant may create new meaning as recounting of memories...

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    1. billing data created by electric utilities

      That's really true. For example, we can use the big data of electricity to depict the resumption rate of factories after the pandemic.

    1. Coronavirus Pandemic Data Explorer. (n.d.). Our World in Data. Retrieved March 3, 2021, from https://ourworldindata.org/coronavirus-data-explorer

      is:webpage lang:en COVID-19 graph case death Germany Sweden UK Afghanistan Africa Albania Algeria Andorra Angola Anguilla Antigua Barbuda Argentina Armenia Asia Australia Austria Azerbaijan Bahamas Bahrain Bangladesh Barbados Belarus Belgium Belize Benin Bermuda Bhutan Bolivia Bosnia Herzegovina Botswana Brazil Bulgaria Burkina Faso Burundi Cambodia Cameroon Canada Cape Verde Cayman Islands Central African Republic Chad Chile China Colombia Comoros Congo Costa Rica Cote d'ivoire Croatia Cuba Cyprus Czechia Democratic Republic of Congo Denmark Djobouti Dominica Dominician Republic Ecuador Egypt El Salvador Equatorial Guinea Eritrea Estonia Eswatini Ethiopia Europe Europian Union Faeroe Islands Falkland Islands Fiji Finland France Gabon Gambia Georgia Ghana Gibraltar Greece Greenland Grenada Guatemala Guernsey Guinea Guinea-Bissau Guyana Haiti Honduras Hong Kong Hungary Iceland India Indonesia Iran Iraq Ireland Isle of Man Israel Italy Jamaica Japan Jersey Jordan Kazakhstan Kenya Kosovo Kuwait Kyrgyzstan Laos Latvia Lebanon Lesotho Liberia Libya Liechtenstein Lithuania Luxembourg Macao Madagascar Malawi Malaysia Maldives Mali Malta Mashall Islands Mauritania Mauritius Mexico Micronesia Moldova Monaco Mongolia Montenegro Morocco Mozambique Myanmar Namibia Nepal Netherlands New Zealand Nicaragua Niger Nigeria North America North Macedonia Northern Cyprus Norway Oceania Oman Pakistan Palestine Panama Papua New Guinea Paraguay Peru Philipines Poland Portugal Qatar Romania Russia Rwanda Saint Helena Saint Kitts and Nevis Saint Lucia Saint Vincent Grenadines Samoa San Marino Sao Tome and Principe Saudi Arabia Senegal Serbia Seychelles Sierra Leone Singapore Slovakia Slovenia Solomon Islands Somalia South Africa South America South Korea South Sudan Spain Sri Lanka Sudan Suriname Switzerland Syria Taiwan Tajikistan Tanzania Thailand Timor Togo Trinidad Tobago Tunisia Turkey Turks and Caicos Islands Uganda Ukraine United Arab Emirates USA Uruguay Uzbekistan Vanuatu Vatican Venezuela Vietnam World Yemen Zambia Zimbabwe test vaccine chart map table data case fatality rate mortality

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    URL

    1. Clift, A. K., von Ende, A., Tan, P. S., Sallis, H. M., Lindson, N., Coupland, C. A. C., Munafò, M. R., Aveyard, P., Hippisley-Cox, J., & Hopewell, J. C. (2021). Smoking and COVID-19 outcomes: An observational and Mendelian randomisation study using the UK Biobank cohort. Thorax, thoraxjnl-2021-217080. https://doi.org/10.1136/thoraxjnl-2021-217080

  3. Sep 2021
    1. Ashish K. Jha, MD, MPH. (2021, September 23). The world has administered 6 billion doses of COVID vaccines to 3.4 Billion people For people waiting for more data before getting the shot The data is in We’ve vaccinated nearly half of all humanity The vaccines are safe [Tweet]. @ashishkjha. https://twitter.com/ashishkjha/status/1440880130331746307

    1. Sam Wang on Twitter: “These are risk levels that you pose to other people. They’re compared with you as—A nonsmoker—A sober driver—A vaccinated person. Unvaccinated? 5x as likely to get sick, for 3x as long. Total risk to others? 15x a vaccinated person Details:https://t.co/ckTWaivK8n https://t.co/PhpLvX2dsm” / Twitter. (n.d.). Retrieved September 19, 2021, from https://twitter.com/SamWangPhD/status/1438361144759132167

    1. Data Sabbath

      Surfing around on other topics and came across the suggestion of a "data Sabbath" which suggests taking a day off of screens, social media, etc. What a nice little framing.

    1. In 2020, 35% of respondents said they used Docker. In 2021, 48.85% said they used Docker. If you look at estimates for the total number of developers, they range from 10 to 25 million. That's 1.4 to 3 million new users this year.

      Rapidly growing popularity of Docker (2020 - 2021)

    1. in the middle of their sixth, seventh, and eighth grade school years. Peer nominations were used to assess two types of social status (peer acceptance and popularity) and three behavioral reputations (academic, prosocial, and physical aggression).

      These are the grades that the data was collected from.

    1. Kraemer, M. U. G., Hill, V., Ruis, C., Dellicour, S., Bajaj, S., McCrone, J. T., Baele, G., Parag, K. V., Battle, A. L., Gutierrez, B., Jackson, B., Colquhoun, R., O’Toole, Á., Klein, B., Vespignani, A., COVID-19 Genomics UK (COG-UK) Consortium‡, Volz, E., Faria, N. R., Aanensen, D. M., … Pybus, O. G. (2021). Spatiotemporal invasion dynamics of SARS-CoV-2 lineage B.1.1.7 emergence. Science, 373(6557), 889–895. https://doi.org/10.1126/science.abj0113

    1. David Dowdy on Twitter: “@NEJM joining the waning immunity debate. I’m going to push back a bit. Data from @UCSDHealth of vax effectiveness in health workers: 94% in June, 65% in July. Interpreted as ‘likely to be due to...delta and waning immunity over time, compounded by end of masking requirements.’ https://t.co/flDOfBbTs7” / Twitter. (n.d.). Retrieved September 2, 2021, from https://twitter.com/davidwdowdy/status/1433254675915157504?s=20

  4. Aug 2021
    1. Sentinel Common Data ModelExternal Link Disclaimer OHDSI Observational Medical Outcomes Partnership (OMOP) Common Data ModelExternal Link Disclaimer Informatics for Integrating Biology and the Bedside (i2b2)External Link Disclaimer / Accrual to Clinical Trials (ACT) Common Data ModelExternal Link Disclaimer Patient-Centered Outcomes Research Network (PCORnet) Common Data ModelExternal Link Disclaimer United States Core Data for Interoperability (USCDI) Health Level Seven (HL7) Fast Healthcare Interoperability Resources (FHIR)External Link Disclaimer Clinical Data Interchange Standards Consortium (CDISC) Study Data Tabulation Model (SDTM)External Link Disclaimer CDISC SDTM COVID-19 companion guideExternal Link Disclaimer U.S. Department of Veterans Affairs Electronic Health Record (EHR) System National Cancer Institute (NCI) Cancer Data Standards Registry and Repository (caDSR)

      All the clinical data standard links

    1. 4The solution, using the Adapter AnalogySentineli2b2/ACTOMOPPCORNET▪Different countries use different “outlets”.▪There is a need for travel adapters.The Solution: ▪Use a converter between various adapters.▪Allow researchers to ask a question once and receive results from many different sources using a common agreed-upon standard structure, or a Common Data Model.

      Types of various data harmonization formats

    2. Sentinel, PCORnet versions 3.1 and 4.0, OMOP and i2b2/ACT

      Data Harmonization Formats

    3. RWD leveraging Clinical Data Interchange Standards Consortium (CDISC) Study Data Tabulation Model (SDTM) via the FDA Gateway
    1. Rogers, J. P., Watson, C. J., Badenoch, J., Cross, B., Butler, M., Song, J., Hafeez, D., Morrin, H., Rengasamy, E. R., Thomas, L., Ralovska, S., Smakowski, A., Sundaram, R. D., Hunt, C. K., Lim, M. F., Aniwattanapong, D., Singh, V., Hussain, Z., Chakraborty, S., … Rooney, A. G. (2021). Neurology and neuropsychiatry of COVID-19: A systematic review and meta-analysis of the early literature reveals frequent CNS manifestations and key emerging narratives. Journal of Neurology, Neurosurgery & Psychiatry, jnnp-2021-326405. https://doi.org/10.1136/jnnp-2021-326405

    1. Prof. Christina Pagel on Twitter: “THREAD latest on B.1.617.2 variant in England: B.1.617.2 (1st discovered in India) is now dominant in England. Here is a thread summarising latest PHE report and Sanger local data. TLDR: it is NOT good news. 1/7” / Twitter. (n.d.). Retrieved August 24, 2021, from https://twitter.com/chrischirp/status/1399333330286415876

    1. Since it was founded by longtime charity executive Pierre Barnoti as the international offshoot of a Montreal animal welfare charity, SPCAI has spent little more than 20 percent of its total revenue on actual programs and services that help animals.
    1. Youyang Gu on Twitter: “People were worried cases would spike further when the UK lifted almost all remaining restrictions in July. The opposite happened. We must acknowledge that restrictions aren’t all that effective in Western countries. (Except Australia, who just entered their 6th lockdown) https://t.co/l7tygXQqn7” / Twitter. (n.d.). Retrieved August 13, 2021, from https://twitter.com/youyanggu/status/1423415277765734402

    1. Ireland Vaccine Progress. “Dose 1 of 2 Progress ▓▓▓▓▓▓▓▓▓▓░░░░░ 68.5% Fully Vaccinated Progress ▓▓▓▓▓▓▓▓▓░░░░░░ 57.1% As of Wednesday, 14 Jul 2021. Note: Percentages of 16+ Population Only. Data Sources in Bio. #CovidVaccine #COVID19 #COVID19Ireland Https://T.Co/QeiFYM4LcD.” Tweet. @IrelandVaccine (blog), July 15, 2021. https://twitter.com/IrelandVaccine/status/1415688619575103492.

    1. One thing I'd like forward-looking hypertext toolmakers to keep in mind is the ability for the tools to help people answer questions like "What led to legalanthology.ch hosting a copy of this document? Given a URL from one organization, is it possible to look at the graph of internal backlinks (let me focus narrowly on incoming edges originating from the same host)?"

    1. Rafael Irizarry. (2021, August 8). Vaccines work in a gif update: COVID19 cases versus vaccination rates in US states through time. The Delta variant effect can be seen clearly starting in July. States with lower vaccination rates are affected much worse. Https://t.co/e0SQpa8Qg0 [Tweet]. @rafalab. https://twitter.com/rafalab/status/1424440520361787392

  5. Jul 2021
    1. If we had truly robust standards for electronic data interchange and less anxiety about privacy, these kinds of data could be moved around more freely in a structured format. Of course, there are regional exchanges where they do. The data could also be created in structured format to begin with.

      This does exist. Fast Healthcare Interoperability Resources (FHIR; pronounced 'fire') is an open standard that describes data formats and elements (the 'resources' in the name), as well as an application programming interface (API) for exchanging electronic health records.

      See more here: https://hl7.org/fhir/

    1. Alan McNally 💙. (2021, February 5). Our latest lab data for B.1.1.7 prevalence in Pillar 2 samples, as determined by SGTF. Clearly now plateauing at 80-90%. Which to me suggests there are other lineages as transmissible as B.1.1.7......... Https://t.co/toA0GyVsZz [Tweet]. @alanmcn1. https://twitter.com/alanmcn1/status/1357701944027004929

    1. NIHR HPRU in Behavioural Science and Eval Bristol. (2021, May 27). Event: The CONQUEST study has collected data on the contacts, behaviour & symptoms of staff & students @BristolUni during #COVID19 to inform policy & math modelling. Join us for this webinar on 8 June for an update on the study, its impact & future plans. Https://t.co/DHrmferP0L https://t.co/25cOASdyKJ [Tweet]. @HPRU_BSE. https://twitter.com/HPRU_BSE/status/1397906695775473671

    1. Nick Holliman. (2021, May 30). @anthonybmasters @d_spiegel A quick visual summary of data on this week’s article by @anthonybmasters & @d_spiegel The outlook is uncertain, although we have survived a variant once already (B.1.1.7). The data on the effect of variants is analysed as fast as it (reliably) arrives. Https://t.co/vOKmCxYMGT https://t.co/3ZeJJTdRs3 [Tweet]. @binocularity. https://twitter.com/binocularity/status/1398957348492918784