Look into what Dr. Miho Ohsaki changed about the clustering subroutine in her work and how it allowed for "more meaningful pattern discovery"

CNN, I. K. (n.d.). Vaccine inequity and hesitancy made the Omicron variant more likely, scientists say. CNN. Retrieved December 23, 2021, from https://www.cnn.com/2021/11/28/world/omicron-coronavirus-variant-vaccine-inequity-intl-cmd/index.html

Gollub, R. L. (2022). Brain changes after COVID revealed by imaging. Nature. https://doi.org/10.1038/d41586-022-00503-x

ReconfigBehSci. (2021, December 17). RT @EricTopol: No evidence that Omicron is less severe, new @imperialcollege study reports https://ft.com/content/020534b3-5a54-4517-9fd1-167a5db50786 https://t.co/5YYzJ6tVtc [Tweet]. @SciBeh. https://twitter.com/SciBeh/status/1472156681098469380

Eric Topol. (2021, October 27). 'The benefit of a third [booster] dose in reducing transmission is sizeable and increases with vaccine coverage and contact rates among individuals." https://medrxiv.org/content/10.1101/2021.10.25.21265500v1 by @billygardner and @DiseaseEcology https://t.co/zAZcJgF1nJ [Tweet]. @EricTopol. https://twitter.com/EricTopol/status/1453153076165021696

Nerd, G. M.-K. H. (2022, February 25). The Jury is Still Out on Ivermectin. Medium. https://gidmk.medium.com/the-jury-is-still-out-on-ivermectin-7d0a1895549

Jørgensen, F. J., Nielsen, L. H., & Petersen, M. B. (2021). Willingness to Take the Booster Vaccine in a Nationally Representative Sample of Danes. PsyArXiv. https://doi.org/10.31234/osf.io/wurz8

I like how Dr. Pacheco-Vega outlines some of his research process here.

Sharing it on Twitter is great, and so is storing a copy on his website. I do worry that it looks like the tweets are embedded via a simple URL method and not done individually, which means that if Twitter goes down or disappears, so does all of his work. Better would be to do a full blockquote embed method, so that if Twitter disappears he's got the text at least. Images would also need to be saved separately.

The Lancet. (2021, April 16). Quantity > quality? The magnitude of #COVID19 research of questionable methodological quality reveals an urgent need to optimise clinical trial research—But how? A new @LancetGH Series discusses challenges and solutions. Read https://t.co/z4SluR3yuh 1/5 https://t.co/94RRVT0qhF [Tweet]. @TheLancet. https://twitter.com/TheLancet/status/1383027527233515520

The BMJ. (2021, April 8). “These data represent a remarkable research resource and illustrate how covid-19 has fostered open science” @jsross119 @BHFDataScience https://t.co/i3ddpBqq7j [Tweet]. @bmj_latest. https://twitter.com/bmj_latest/status/1380062868746469377

ReconfigBehSci on Twitter: ‘Now #scibeh2020: Pat Healey from QMU, Univ. Of London speaking about (online) interaction and miscommunication in our session on “Managing Online Research Discourse” https://t.co/Gsr66BRGcJ’ / Twitter. (n.d.). Retrieved 6 March 2021, from https://twitter.com/SciBeh/status/1326155809437446144

Richard. (2021, October 17). @fascinatorfun Letter to parents sent to me by a friend today … https://t.co/Ivn93WLD9t [Tweet]. @dikt54. https://twitter.com/dikt54/status/1449763622020866055

ReconfigBehSci on Twitter: ‘@alexdefig are you really going to claim that responses to the introduction of passports on uptake across 4 other countries are evidentially entirely irrelevant to whether or not passports are justified or not?’ / Twitter. (n.d.). Retrieved 31 March 2022, from https://twitter.com/SciBeh/status/1444358068280565764

Sample, I., & editor, I. S. S. (2022, March 10). UK Covid cases rising among those aged 55 and over. The Guardian. https://www.theguardian.com/world/2022/mar/10/uk-covid-cases-rising-among-those-aged-55-and-over

Uittenhove, K., Jeanneret, S., & Vergauwe, E. (2022). From lab-based to web-based behavioural research: Who you test is more important than how you test. PsyArXiv. https://doi.org/10.31234/osf.io/uy4kb

ReconfigBehSci. (2022, February 2). RT @AndreasShrugged: Meta-shmeta analysis. They claim they find that lockdowns reduced mortality in Europe and U.S. only by 0.2%. After bro… [Tweet]. @SciBeh. https://twitter.com/SciBeh/status/1489499513219911686

ReconfigBehSci. (2022, February 17). @thackerpd @STWorg “carping about anti-vaxxers”? You mean constant attempts to try and save lives and end pandemic by generating, curating and promoting research data on the benefits of vaccination and/or generating, curating and promoting data that undercuts the wilful disinformation on vaxx? [Tweet]. @SciBeh. https://twitter.com/SciBeh/status/1494201269724012546

Cornelius Roemer. (2022, February 12). Fantastic work by @UKHSA comparing serial intervals of BA.1, BA.2 and Delta as published in the most recent technical briefing. BA.2 seems to have even shorter serial interval than BA.1 This could help explain different relative growth rates of BA.2 vs BA.1 in different countries https://t.co/Gch94Ew8CX [Tweet]. @CorneliusRoemer. https://twitter.com/CorneliusRoemer/status/1492434232664375304

Altarawneh, H. N., Chemaitelly, H., Hasan, M. R., Ayoub, H. H., Qassim, S., AlMukdad, S., Coyle, P., Yassine, H. M., Al-Khatib, H. A., Benslimane, F. M., Al-Kanaani, Z., Al-Kuwari, E., Jeremijenko, A., Kaleeckal, A. H., Latif, A. N., Shaik, R. M., Abdul-Rahim, H. F., Nasrallah, G. K., Al-Kuwari, M. G., … Abu-Raddad, L. J. (2022). Protection against the Omicron Variant from Previous SARS-CoV-2 Infection. New England Journal of Medicine, 0(0), null. https://doi.org/10.1056/NEJMc2200133

Freja Kirsebom. (2022, January 7). Today we publish our latest analysis where we stratify by age to investigate vaccine effectiveness (VE) against Omicron in adults aged 65 years and older in England. Https://t.co/y73uto6kll 1/14 [Tweet]. @freja_kirsebom. https://twitter.com/freja_kirsebom/status/1479528228079509516

Deepti Gurdasani. (2022, January 10). Lots of people dismissing links between COVID-19 and all-cause diabetes. An association that’s been shown in multiple studies- whether this increase is due to more diabetes or SARS2 precipitating diabetic keto-acidosis allowing these to be diagnosed is not known. A brief look👇 [Tweet]. @dgurdasani1. https://twitter.com/dgurdasani1/status/1480546865812840450

APPG on Coronavirus. (2022, January 18). 🗣Dr.Claire Steves continued: “Looking in the national core studies, from cohort studies across the UK we’ve looked at 10 different longitudinal studies. Our best estimates are that about 5% of middle aged people are experiencing long term.. 27/ #APPGCoronavirus #LongCovid [Tweet]. @AppgCoronavirus. https://twitter.com/AppgCoronavirus/status/1483453895061999618

Adam Kucharski. (2022, January 18). Below analysis was two years ago (https://bbc.co.uk/news/health-51148303). As well as providing an early warning about the COVID threat, it’s a good illustration of what is often an under-appreciated point: If we want to make sense of epidemic data and dynamics in real-time, we need models… 1/ https://t.co/ZdpzOq3Bzp [Tweet]. @AdamJKucharski. https://twitter.com/AdamJKucharski/status/1483368504392880128

Mahase, E. (2022). Covid-19: What do we know about omicron sublineages? BMJ, 376, o358. https://doi.org/10.1136/bmj.o358

American Medical Association (AMA). (2021, December 6). Peter Hotez, MD, PhD, on the omicron variant and Delta winter surge | COVID-19 Update for Dec. 6, 20. https://www.youtube.com/watch?v=WnfpC1_N2Mg

COVID-19 takes serious toll on heart health—A full year after recovery. (n.d.). Retrieved February 11, 2022, from https://www.science.org/content/article/covid-19-takes-serious-toll-heart-health-full-year-after-recovery

PaedsHaemDoc. (2022, January 9). Had the misfortune (via @fatemperor) to come across Dr Paul Alexander -apparently credentialed yet in single blog post demonstrates perfectly either a disconnect from rational thought or deliberate misinformation spreading of the #masspsychosis of the anti-Vax crew let’s examine https://t.co/Ctd49cb1qK [Tweet]. @dr_barrett. https://twitter.com/dr_barrett/status/1479986071832248322

Yaneer Bar-Yam on Twitter. (n.d.). Twitter. Retrieved February 7, 2022, from https://twitter.com/yaneerbaryam/status/1474091037861761026

Barnes, O., & Alabi, L. O. (2022, January 27). UK coronavirus cases tick up 10%, symptom tracker app shows. Financial Times. https://www.ft.com/content/f9833324-7986-48c4-a96c-153049ed9b5a

Torjesen, I. (2022). Covid-19: Peak of viral shedding is later with omicron variant, Japanese data suggest. BMJ, 376, o89. https://doi.org/10.1136/bmj.o89

Male, V. (2022). Menstruation and covid-19 vaccination. BMJ, 376, o142. https://doi.org/10.1136/bmj.o142

Zimmerman, M. I., Porter, J. R., Ward, M. D., Singh, S., Vithani, N., Meller, A., Mallimadugula, U. L., Kuhn, C. E., Borowsky, J. H., Wiewiora, R. P., Hurley, M. F. D., Harbison, A. M., Fogarty, C. A., Coffland, J. E., Fadda, E., Voelz, V. A., Chodera, J. D., & Bowman, G. R. (2021). SARS-CoV-2 simulations go exascale to predict dramatic spike opening and cryptic pockets across the proteome. Nature Chemistry, 13(7), 651–659. https://doi.org/10.1038/s41557-021-00707-0

Coronavirus: Inside a long COVID clinic as patient who was “fit and healthy” can now “barely do anything.” (n.d.). Sky News. Retrieved January 25, 2022, from https://news.sky.com/story/coronavirus-inside-a-long-covid-clinic-as-patient-who-was-fit-and-healthy-can-now-barely-do-anything-12522619

Crane, M., & University, T. O. S. (n.d.). Vaccine hesitance dropped faster among Blacks, study finds. Retrieved January 24, 2022, from https://medicalxpress.com/news/2022-01-vaccine-hesitance-faster-blacks.html

Patone, M., Mei, X. W., Handunnetthi, L., Dixon, S., Zaccardi, F., Shankar-Hari, M., Watkinson, P., Khunti, K., Harnden, A., Coupland, C. A., Channon, K. M., Mills, N. L., Sheikh, A., & Hippisley-Cox, J. (2021). Risk of myocarditis following sequential COVID-19 vaccinations by age and sex (p. 2021.12.23.21268276). medRxiv. https://doi.org/10.1101/2021.12.23.21268276

Kamrath, C., Rosenbauer, J., Eckert, A. J., Siedler, K., Bartelt, H., Klose, D., Sindichakis, M., Herrlinger, S., Lahn, V., & Holl, R. W. (2022). Incidence of Type 1 Diabetes in Children and Adolescents During the COVID-19 Pandemic in Germany: Results From the DPV Registry. Diabetes Care, dc210969. https://doi.org/10.2337/dc21-0969

Bristol, U. of. (n.d.). June: COVID-19 mask-wearing | News and features | University of Bristol. University of Bristol. Retrieved January 20, 2022, from https://www.bristol.ac.uk/news/2021/june/covid19-maskwearing.html

Scientists try to pinpoint why rapid Covid tests are missing some cases. (2022, January 6). STAT. https://www.statnews.com/2022/01/06/scientists-try-to-pinpoint-why-rapid-covid-tests-are-missing-cases/

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Olson, S. M., Newhams, M. M., Halasa, N. B., Price, A. M., Boom, J. A., Sahni, L. C., Pannaraj, P. S., Irby, K., Walker, T. C., Schwartz, S. P., Maddux, A. B., Mack, E. H., Bradford, T. T., Schuster, J. E., Nofziger, R. A., Cameron, M. A., Chiotos, K., Cullimore, M. L., Gertz, S. J., … Randolph, A. G. (2022). Effectiveness of BNT162b2 Vaccine against Critical Covid-19 in Adolescents. New England Journal of Medicine, 0(0), null. https://doi.org/10.1056/NEJMoa2117995

Banerjee, A. (2022, January 12). I’m leading a long Covid trial – it’s clear Britain has underestimated its impact. The Guardian. https://www.theguardian.com/commentisfree/2022/jan/12/long-covid-trial-britain-short-term-virus

Iacobucci, G. (2022). Covid-19: Fourth vaccine doses—who needs them and why? BMJ, 376, o30. https://doi.org/10.1136/bmj.o30

Happi, C. T., & Nkengasong, J. N. (2022). Two years of COVID-19 in Africa: Lessons for the world. Nature, 601(7891), 22–25. https://doi.org/10.1038/d41586-021-03821-8

A Marm Kilpatrick. (2021, November 24). How do we get broad immunity to SARS-CoV-2 that will protect against future variants? 2 studies (are there more?) suggest that vaccination followed by infection gives broader protection than infection followed by vaccination. @florian_krammer @profshanecrotty @GuptaR_lab https://t.co/rqdf6rE9ej [Tweet]. @DiseaseEcology. https://twitter.com/DiseaseEcology/status/1463391782742335491

Omicron largely evades immunity from past infection or two vaccine doses | Imperial News | Imperial College London. (n.d.). Imperial News. Retrieved December 21, 2021, from https://www.imperial.ac.uk/news/232698/modelling-suggests-rapid-spread-omicron-england/

Reuters. (2021, December 20). Moderna says booster produces strong antibody response to Omicron. The Guardian. https://www.theguardian.com/world/2021/dec/20/moderna-booster-strong-antibody-response-omicron-covid-vaccine-variant

Simon, M. A., Luginbuhl, R. D., & Parker, R. (2021). Reduced Incidence of Long-COVID Symptoms Related to Administration of COVID-19 Vaccines Both Before COVID-19 Diagnosis and Up to 12 Weeks After (p. 2021.11.17.21263608). https://doi.org/10.1101/2021.11.17.21263608

New Study Finds Vaccine Dose Timing Reduces Risk of Long-COVID in Unvaccinated Patients. (2021, December 15). Arcadia.Io. https://arcadia.io/press-release-vaccine-dose-timing-reduces-long-covid-risk/

Altmann, D. M., & Boyton, R. J. (2021). SARS-Cov-2 immune waning and reinfection in care-home settings. The Lancet. Healthy Longevity, 2(12), e776–e777. https://doi.org/10.1016/S2666-7568(21)00276-2

Replicating scientific results is tough—But essential. (2021). Nature, 600(7889), 359–360. https://doi.org/10.1038/d41586-021-03736-4

Mahase, E. (2021). Covid-19: Do vaccines work against omicron—and other questions answered. BMJ, 375, n3062. https://doi.org/10.1136/bmj.n3062

Omicron cases may be far higher than currently confirmed, variant marker analysis reveals. (2021, December 8). Inews.Co.Uk. https://inews.co.uk/news/health/omicron-covid-cases-may-be-seven-times-higher-than-confirmed-1341156

THL recommends coronavirus vaccinations for at-risk children aged 5 to 11 years, for the entire age group require more information on safety—Press release—THL. (n.d.). Finnish Institute for Health and Welfare (THL), Finland. Retrieved December 6, 2021, from https://thl.fi/en/web/thlfi-en/-/thl-recommends-coronavirus-vaccinations-for-at-risk-children-aged-5-to-11-years-for-the-entire-age-group-require-more-information-on-safety?redirect=%2Fen%2Fweb%2Fthlfi-en%2Fwhats-new

COVID-19 vaccine surveillance report—Week 47. (n.d.). 46.

COVID-19 Living Evidence. (2021, November 12). As of 12.11.2021, we have indexed 257,633 publications: 18,674 pre-prints 238,959 peer-reviewed publications Pre-prints: BioRxiv, MedRxiv Peer-reviewed: PubMed, EMBASE, PsycINFO https://t.co/ytOhLG90Pi [Tweet]. @evidencelive. https://twitter.com/evidencelive/status/1459163720450519042

Smith, C., Odd, D., Harwood, R., Ward, J., Linney, M., Clark, M., Hargreaves, D., Ladhani, S. N., Draper, E., Davis, P. J., Kenny, S. E., Whittaker, E., Luyt, K., Viner, R., & Fraser, L. K. (2021). Deaths in children and young people in England after SARS-CoV-2 infection during the first pandemic year. Nature Medicine, 1–8. https://doi.org/10.1038/s41591-021-01578-1

Kovacs, M., Hoekstra, R., & Aczel, B. (2021). The Role of Human Fallibility in Psychological Research: A Survey of Mistakes in Data Management. Advances in Methods and Practices in Psychological Science, 4(4), 25152459211045930. https://doi.org/10.1177/25152459211045930

Hulme, W. J., Williamson, E. J., Green, A., Bhaskaran, K., McDonald, H. I., Rentsch, C. T., Schultze, A., Tazare, J., Curtis, H. J., Walker, A. J., Tomlinson, L., Palmer, T., Horne, E., MacKenna, B., Morton, C. E., Mehrkar, A., Fisher, L., Bacon, S., Evans, D., … Goldacre, B. (2021). Comparative effectiveness of ChAdOx1 versus BNT162b2 COVID-19 vaccines in Health and Social Care workers in England: A cohort study using OpenSAFELY [Preprint]. Epidemiology. https://doi.org/10.1101/2021.10.13.21264937

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Clift, A. K., von Ende, A., Tan, P. S., Sallis, H. M., Lindson, N., Coupland, C. A. C., Munafò, M. R., Aveyard, P., Hippisley-Cox, J., & Hopewell, J. C. (2021). Smoking and COVID-19 outcomes: An observational and Mendelian randomisation study using the UK Biobank cohort. Thorax, thoraxjnl-2021-217080. https://doi.org/10.1136/thoraxjnl-2021-217080

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Taylor, L. (2021). The Venezuelan health-care workers secretly collecting COVID stats. Nature, 597(7874), 20–21. https://doi.org/10.1038/d41586-021-02276-1

David Dowdy on Twitter: “@NEJM joining the waning immunity debate. I’m going to push back a bit. Data from @UCSDHealth of vax effectiveness in health workers: 94% in June, 65% in July. Interpreted as ‘likely to be due to...delta and waning immunity over time, compounded by end of masking requirements.’ https://t.co/flDOfBbTs7” / Twitter. (n.d.). Retrieved September 2, 2021, from https://twitter.com/davidwdowdy/status/1433254675915157504?s=20

Zuckerman, E. (2021). Demand five precepts to aid social-media watchdogs. Nature, 597(7874), 9–9. https://doi.org/10.1038/d41586-021-02341-9

Rogers, J. P., Watson, C. J., Badenoch, J., Cross, B., Butler, M., Song, J., Hafeez, D., Morrin, H., Rengasamy, E. R., Thomas, L., Ralovska, S., Smakowski, A., Sundaram, R. D., Hunt, C. K., Lim, M. F., Aniwattanapong, D., Singh, V., Hussain, Z., Chakraborty, S., … Rooney, A. G. (2021). Neurology and neuropsychiatry of COVID-19: A systematic review and meta-analysis of the early literature reveals frequent CNS manifestations and key emerging narratives. Journal of Neurology, Neurosurgery & Psychiatry, jnnp-2021-326405. https://doi.org/10.1136/jnnp-2021-326405

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